AlfalfaGEDB | MS.gene55778

M. sativa cultivar XinJiangDaYe / MS.gene55778

KEGG: -
GO: GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0008092
PFAM: PF07765.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55778.t1	RHN43443.1	90.6	1354	127	0	1	1354	1	1354	5.20E-165	592.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55778.t1	F4JZY1	40.0	95	52	1	1	95	1	90	1.9e-14	83.6
MS.gene55778.t1	F4JZY1	66.7	42	12	1	1313	1352	1539	1580	1.0e-07	61.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55778.t1	A0A396GSE1	90.6	1354	127	0	1	1354	1	1354	3.8e-165	592.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene55778	0.821201	4.58E-53	-1.69E-46
MS.gene049159	MS.gene55778	0.841373	4.94E-58	-1.69E-46
MS.gene049254	MS.gene55778	0.824089	9.75E-54	-1.69E-46
MS.gene049272	MS.gene55778	0.832455	9.36E-56	-1.69E-46
MS.gene049404	MS.gene55778	0.804542	2.05E-49	-1.69E-46
MS.gene049435	MS.gene55778	0.851257	9.98E-61	-1.69E-46
MS.gene049452	MS.gene55778	0.8481	7.60E-60	-1.69E-46
MS.gene049501	MS.gene55778	0.81982	9.50E-53	-1.69E-46
MS.gene049647	MS.gene55778	0.816416	5.59E-52	-1.69E-46
MS.gene049669	MS.gene55778	0.800394	1.47E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55778.t1	MTR_8g099275	72.285	1151	252	6	207	1354	137	1223	0.0	1471
MS.gene55778.t1	MTR_8g099275	68.474	1088	260	14	1	1061	1	1032	0.0	1234
MS.gene55778.t1	MTR_8g099290	65.527	702	163	7	687	1354	3	659	0.0	796
MS.gene55778.t1	MTR_8g099290	33.333	687	315	21	423	1024	1	629	3.27e-49	187
MS.gene55778.t1	MTR_8g099280	60.000	430	121	3	925	1354	168	546	1.20e-138	435
MS.gene55778.t1	MTR_8g099280	59.375	64	24	1	24	87	55	116	7.36e-14	76.6
MS.gene55778.t1	MTR_8g099265	28.309	816	446	17	551	1348	103	797	9.11e-60	221
MS.gene55778.t1	MTR_8g099265	30.328	366	229	7	340	683	119	480	1.09e-19	95.9
MS.gene55778.t1	MTR_8g099265	26.286	525	300	17	1	477	1	486	1.48e-15	82.8
MS.gene55778.t1	MTR_5g075490	23.711	582	361	18	7	544	18	560	3.04e-13	74.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55778.t1	AT5G41790	28.694	1279	623	33	137	1352	528	1580	1.45e-75	277
MS.gene55778.t1	AT5G41790	31.299	770	456	12	1	746	1	721	5.17e-60	228
MS.gene55778.t1	AT5G41790	28.694	1279	623	33	137	1352	528	1580	1.45e-75	277
MS.gene55778.t1	AT5G41790	31.299	770	456	12	1	746	1	721	5.17e-60	228
MS.gene55778.t1	AT1G64330	42.017	238	117	4	1	238	1	217	1.45e-38	153
MS.gene55778.t1	AT5G41780	28.571	308	159	8	1039	1345	284	531	9.30e-15	79.3
MS.gene55778.t1	AT5G41780	28.571	308	159	8	1039	1345	284	531	9.30e-15	79.3
MS.gene55778.t1	AT5G41780	28.571	308	159	8	1039	1345	284	531	9.30e-15	79.3
MS.gene55778.t1	AT5G41780	28.571	308	159	8	1039	1345	284	531	9.30e-15	79.3
MS.gene55778.t1	AT1G64320	32.609	184	121	1	359	539	105	288	3.07e-14	78.2

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Find 224 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGACCTGGAGGAGAA+AGG	0.542883	4.3:-4821559	MS.gene55778:CDS
AAAATAGATCATTCGGAGAG+AGG	0.578565	4.3:-4822030	MS.gene55778:CDS
AAACATCTCCCATGAGCTTC+AGG	0.394831	4.3:-4821215	MS.gene55778:CDS
AAACCTAGTTGATCAATTGA+AGG	0.498028	4.3:-4824110	MS.gene55778:CDS
AAAGCAAATAAGTGCTAACC+GGG	0.615043	4.3:-4822097	MS.gene55778:CDS
AAAGGAAGATAGCTTTAGAA+AGG	0.556622	4.3:-4821437	MS.gene55778:CDS
AAATCAATTGGTATTGATTG+TGG	0.500035	4.3:+4824668	None:intergenic
AAATCATATCGAAGACACGC+AGG	0.576181	4.3:-4820856	MS.gene55778:CDS
AAATTGAAGACAAAGTTAAA+AGG	0.385979	4.3:-4824786	MS.gene55778:CDS
AACAACAATAAGCCACAATC+TGG	0.428884	4.3:-4823996	MS.gene55778:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCTAGTTGATCAATTGA+AGG	-	chr4.3:4821754-4821773	MS.gene55778:CDS	30.0%
AAACGAGAAAAAAGATATGG+AGG	-	chr4.3:4822144-4822163	MS.gene55778:CDS	30.0%
AAGACAGAGAAAATTTAACC+AGG	-	chr4.3:4823418-4823437	MS.gene55778:CDS	30.0%
AGAACAATTGCTAAGTGAAA+AGG	-	chr4.3:4824409-4824428	MS.gene55778:CDS	30.0%
AGCAGACAAAATAGATCATT+CGG	-	chr4.3:4823827-4823846	MS.gene55778:CDS	30.0%
ATCTCAGATAGACAATTTGT+TGG	-	chr4.3:4822738-4822757	MS.gene55778:CDS	30.0%
ATGAAAAGCTTCATTGTTAG+CGG	+	chr4.3:4824522-4824541	None:intergenic	30.0%
ATTAAAGCAAGAACTTGAAG+TGG	-	chr4.3:4821391-4821410	MS.gene55778:CDS	30.0%
CTGAATTTGAATTGAACACT+CGG	+	chr4.3:4823346-4823365	None:intergenic	30.0%
GAAGAAACTCAAAGATAATG+GGG	-	chr4.3:4822291-4822310	MS.gene55778:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	4820838	4825048	4820838	ID=MS.gene55778
chr4.3	mRNA	4820838	4825048	4820838	ID=MS.gene55778.t1;Parent=MS.gene55778
chr4.3	exon	4824955	4825048	4824955	ID=MS.gene55778.t1.exon1;Parent=MS.gene55778.t1
chr4.3	CDS	4824955	4825048	4824955	ID=cds.MS.gene55778.t1;Parent=MS.gene55778.t1
chr4.3	exon	4820838	4824808	4820838	ID=MS.gene55778.t1.exon2;Parent=MS.gene55778.t1
chr4.3	CDS	4820838	4824808	4820838	ID=cds.MS.gene55778.t1;Parent=MS.gene55778.t1

Gene Sequence

>MS.gene55778

ATGGTGAAACATCACTTGAGAAAGTCTATAAAATCGCTGTTTGAAAGTCACATTGACCCTGATAAAGAAGAGCAGCTCCAGGGAGCTAAAACAGGTACGATCTCTATCCACAATTACACTCTGCCCCATGACAGCTGAAATGATATCATGGAAGATCACTAGGAAAGTTATACTATGTTATCTGTATATCACCTTATGTTGATCAACAATTGATTTCGACTTTTTCTAATTTTGCTACAGAAATTGAAGACAAAGTTAAAAGGATATTGAAACTTATTAAAGATGACAACCTTGAAGAGGATGGTACCTCAGCAGAAATTTTGAAGAGGGAACCGCTTGCTGAATTGATTGAGGATATCCACAATCAATACCAATTGATTTACACACAGCATGATCATCTGACAGGTGAGTTAAAGAAAAGGATCAAAGGCAAGCGAGAAAAAGGAAGTTCTTCATCCAGCTCTGATTCAGATTCGGATTCGGATTATTCTTCAAAGGACAGAGGCAGCAAAAATGGTCAACTGCAAAATGAGTTTCAAAAGATAATTGATGGATTAAAGCAAGAACTTGAAGTGGCGCATAAGGAAGTCGCTGACTTAAATCAGAAGTTGACAGTTACACATGAAGAGAAGGAGAACATAAGTTCAAAACACCTTGCAGCATTGACCAAGATACAAGAAGCAGACAAGGTTAGTATGAATTTGAAAACTGATGCTGAGGCATTTGAGATACAAATATCAAAACTTTTGGCTGAGAATACTGAACTAAATAAGCAACTGGACATTGCTGGTAGAGTAGAAGCTGAACTGAGTCAAAAATTGGAGGATATGAAGACAGAAAACAATAGCTTGGCCATGGAGAAAGAGACAGCTCTCCAACAGATTGGTGAGGAAAGGAAGATTACAGATGACCTGAGAAACCTAGTTGATCAATTGAAGGATGATAAGTCAGTGATTGCAAAGGAATTACAAGCAGCAACAGATGAACTTTCTATTCTGAAGCAGCAATTGAAACATGCAGAACAACAAATAACAACAATAAGCCACAATCTGGAGGTTACAGAGGAAGAAAATAAATCATTAAAAGCAGAAATTTCACAAGCTTCAAATGAGATTCAGCTGTCTCAGAACAGAATACAGGAATTTGCATCTGAATTAAGTCAGTTAAAGGAGAAACATGATGAGAAAGACAGGGAAGTGTCAACCCTCACTCAGATCCACGAAGGGCATAAGAATGAGTCCTCAAATCTTATCAGGGAACTAGAGACACAAATCACAAATCTGGGGATGGAATTAGCATCACTGCAAAACGAGAAAAAAGATATGGAGGATCAACTTAAGAGCAGCACCACTGAAAAAAGAGAACTGGAAGAGCGCAATTTAGGCTTGCTAAACCAAATTTCAGAACTTGAAATGAAGTCCAAAGAAAGAGAAGAGGAACTATCTGCTATCATGAAGAAACTCAAAGATAATGGGGATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGACAATTTGCTCGCTGATTTAAGCTCATTACATGCTCAGAAAACTGAACTGGAAGAGCAAATAATTTTTAAAAGTAATGAAGCCTCAACTCGAGTTGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACAACACCAGAAATCTGACTTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCCGAGTGTTCAATTCAAATTCAAAGTCTGAAAGAGGAGGTTGACAGAAAATCCCTGGAACAAGAGAGACTTATAGAAGACAGAGAACATTTTACAAAAGAAAGAGAAGAGGAACTATCTGATATCATGAAGAAACTCCAAGATAATGAGAATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGACAATTTGTTGGCTGATATTAGCTCATTACATGCTCAGAAAAATGAACTGGAAGAGCAAATAATTTTTAAAAGTAATGAAGCCTCAAATCAAGTCGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACAACACCAGAAATCTGACTTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCAGAGTGTTCAATTCAAATTCAAAGTCTGAAAGAGGAGGTTGGCAGAAAATCCCTGGAACAAGAGAGACTTATGGAAGACAGAGAAAATTTTACAAAAGAAAGAGAAGCGGAACTATCTGATATCATGAAGAAACTCAAAGATAATGAGAATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGAAAATTTGTTGGCTGATATTAGCTCATTACATGCTCAGAAAAATGAACTGGAAGAGCAAATTATTTTTAAAAGTAATGAAGCCTCAACTCGAGTCGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACGACACCAGAAATCTGACCTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCCGAGTGTTCAATTCAAATTCAGAGTCTGAAAGAGGAGGTTGACAGAAAATCCCTGGAACAAGAGAGACTTATGGAAGACAGAGAAAATTTAACCAGGCAGATAAAGAATCTGGAACTGGAGATAAGCTCCATCAAGAGCAAAAATAGCAAAGATGAAGAGCAAATAAGGACCAACGTCCAAGTGATCAATCATCTCCAGGATAAAATTCATATGGCAGAGATAGAAGGTTCAACCCAAATAGTTGCCTTTGGTGAGCAAATTAAGAATCTTCAACTTAATTTGGCACAGGAACTAGCGCAGCAGCGCAAAAAAATGGAGTTGGAGCTGGATTCCATACGCAGCCAGAAGAGTGAAGTTGAAGAGCAGTTAAGAGCCAAAGACCGCGAGTTGAACACTTTAGAGCAAAAAGAAAGTGAATACGCAAAGCAAATAAGTGCTAACCGGGATGAGATCAGTAAACTGGCACAGGAAAATTTGGAGCTAGCAGACAAAATAGATCATTCGGAGAGAGGATTAGCAACAAGAGAATTTGAGTTCTCTGCGCTTCAGGATAAACTTTATAAGGCAGAGGAAGAGGCTTCAGGAAAAACAATTGCCTTCACAGCTCAAGTTGACAATCTGAAAAAGGACTTGCTTTCCTTGCAGAAAACAAAAGAAGAATTGGAGCTCTGCTGTGAAAATATCAAAGAAGAACACACAGAAGTCCTCAGAATGGTTGACAATGAAAAGAATGAATTAGCCAACAAAAACATGGATCTTCAGAGAACATTGGAAGAACGAGAAGATGCATATCAGAAGTTGAATGAAGAATATAAACAAATTGATAATTGGTTTAATGAATACAAGGTCAAACTTGAAGTTGCTGAGAGGAAAATGGAAGAAATGGCAGAAGAGTTTCGTGAAGGCATTGGGTCAAAAGATCAGATGGTAACTGATTTGGAACAGCAAGTTGAAGACCTGAAAAGAGACCTGGAGGAGAAAGGAGATGAAGTCAGCACTTTGTTTGAGAATGTCAGGAATCTTGAGGTAAAGCTTCGCCTGTCAAACCAAAAGCTCCGGGTTACAGAACAATTGCTAAGTGAAAAGGAAGATAGCTTTAGAAAGGCGGAACAAGAGTTTCAGCAAGTTCAGAGAGAACTTGAAGACAGGATTGCTACTCTGGTAGCTACAATCACCGCTAACAATGAAGCTTTTCATGAAACTATCACAAGTGTTAAAGTGTGTGTCAACAGTGTGATATCTGGGATAGATACTGTGAGCAGGAAATTTTCCGACGAAAGCAAAAATCATGAGAACTACATCTCAAACATCTCCCATGAGCTTCAGGTTGCAAAAGAATCTGTCAGCGAGATGAATAGGGTGAAGGGGCAGTTACAGAGAGATAAAGATCGTTTGTTGGAGGAACTGCAGGGTAAAAAGGAAGAGGAATTAACTCTGAGGGAAAAGGTTGAGAAGCTAGAGGCGAAGGCAAGAAAGGAGGAATCAGAGAAGATGAATGTGACATCAACTGTTGTTGAACTTAAGAAGACGGTTGAGGCGCTAGAGAAGTTGATGAAAGAGAAAGAGGAAGGCATGTTGGACTTGGGAGAGGAAAAGAGGGAGGCCATCAGGCAGCTCTGTTTGTGGATTGATTATCACCGCGAGTGTAGTGACTATCTCAAGGAAATCATATCGAAGACACGCAGGGGCCAGAGAGCAGCATAA

Protein sequence

>MS.gene55778.t1

MVKHHLRKSIKSLFESHIDPDKEEQLQGAKTEIEDKVKRILKLIKDDNLEEDGTSAEILKREPLAELIEDIHNQYQLIYTQHDHLTGELKKRIKGKREKGSSSSSSDSDSDSDYSSKDRGSKNGQLQNEFQKIIDGLKQELEVAHKEVADLNQKLTVTHEEKENISSKHLAALTKIQEADKVSMNLKTDAEAFEIQISKLLAENTELNKQLDIAGRVEAELSQKLEDMKTENNSLAMEKETALQQIGEERKITDDLRNLVDQLKDDKSVIAKELQAATDELSILKQQLKHAEQQITTISHNLEVTEEENKSLKAEISQASNEIQLSQNRIQEFASELSQLKEKHDEKDREVSTLTQIHEGHKNESSNLIRELETQITNLGMELASLQNEKKDMEDQLKSSTTEKRELEERNLGLLNQISELEMKSKEREEELSAIMKKLKDNGDESSSKISDLTSQIDNLLADLSSLHAQKTELEEQIIFKSNEASTRVESITNELNVLQQEVESLQHQKSDLEVQLVEKSQENSECSIQIQSLKEEVDRKSLEQERLIEDREHFTKEREEELSDIMKKLQDNENESSSKISDLTSQIDNLLADISSLHAQKNELEEQIIFKSNEASNQVESITNELNVLQQEVESLQHQKSDLEVQLVEKSQENSECSIQIQSLKEEVGRKSLEQERLMEDRENFTKEREAELSDIMKKLKDNENESSSKISDLTSQIENLLADISSLHAQKNELEEQIIFKSNEASTRVESITNELNVLQQEVESLRHQKSDLEVQLVEKSQENSECSIQIQSLKEEVDRKSLEQERLMEDRENLTRQIKNLELEISSIKSKNSKDEEQIRTNVQVINHLQDKIHMAEIEGSTQIVAFGEQIKNLQLNLAQELAQQRKKMELELDSIRSQKSEVEEQLRAKDRELNTLEQKESEYAKQISANRDEISKLAQENLELADKIDHSERGLATREFEFSALQDKLYKAEEEASGKTIAFTAQVDNLKKDLLSLQKTKEELELCCENIKEEHTEVLRMVDNEKNELANKNMDLQRTLEEREDAYQKLNEEYKQIDNWFNEYKVKLEVAERKMEEMAEEFREGIGSKDQMVTDLEQQVEDLKRDLEEKGDEVSTLFENVRNLEVKLRLSNQKLRVTEQLLSEKEDSFRKAEQEFQQVQRELEDRIATLVATITANNEAFHETITSVKVCVNSVISGIDTVSRKFSDESKNHENYISNISHELQVAKESVSEMNRVKGQLQRDKDRLLEELQGKKEEELTLREKVEKLEAKARKEESEKMNVTSTVVELKKTVEALEKLMKEKEEGMLDLGEEKREAIRQLCLWIDYHRECSDYLKEIISKTRRGQRAA