Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90231.t1 | XP_003608406.2 | 97.2 | 141 | 4 | 0 | 1 | 141 | 1 | 141 | 5.40E-65 | 256.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90231.t1 | G7JV55 | 97.2 | 141 | 4 | 0 | 1 | 141 | 1 | 141 | 3.9e-65 | 256.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene90231 | -0.800183 | 1.62E-48 | -1.69E-46 |
| MS.gene050826 | MS.gene90231 | -0.808574 | 2.90E-50 | -1.69E-46 |
| MS.gene051190 | MS.gene90231 | -0.808347 | 3.24E-50 | -1.69E-46 |
| MS.gene051924 | MS.gene90231 | 0.809158 | 2.17E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene90231 | -0.803913 | 2.78E-49 | -1.69E-46 |
| MS.gene052673 | MS.gene90231 | 0.855615 | 5.60E-62 | -1.69E-46 |
| MS.gene052674 | MS.gene90231 | -0.807586 | 4.70E-50 | -1.69E-46 |
| MS.gene052675 | MS.gene90231 | -0.815593 | 8.54E-52 | -1.69E-46 |
| MS.gene052677 | MS.gene90231 | -0.814529 | 1.47E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene90231 | -0.803695 | 3.08E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene90231 | 0.802522 | 5.39E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene90231 | -0.826646 | 2.42E-54 | -1.69E-46 |
| MS.gene054468 | MS.gene90231 | -0.81306 | 3.10E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene90231 | -0.808419 | 3.13E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene90231 | -0.802241 | 6.16E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene90231 | -0.818373 | 2.03E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene90231 | -0.821197 | 4.59E-53 | -1.69E-46 |
| MS.gene057156 | MS.gene90231 | 0.807105 | 5.95E-50 | -1.69E-46 |
| MS.gene057598 | MS.gene90231 | -0.803429 | 3.50E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene90231 | -0.817886 | 2.61E-52 | -1.69E-46 |
| MS.gene059439 | MS.gene90231 | -0.834805 | 2.42E-56 | -1.69E-46 |
| MS.gene060122 | MS.gene90231 | 0.835949 | 1.25E-56 | -1.69E-46 |
| MS.gene060125 | MS.gene90231 | 0.815039 | 1.13E-51 | -1.69E-46 |
| MS.gene060137 | MS.gene90231 | 0.832983 | 6.92E-56 | -1.69E-46 |
| MS.gene06052 | MS.gene90231 | -0.852463 | 4.54E-61 | -1.69E-46 |
| MS.gene060932 | MS.gene90231 | -0.804205 | 2.42E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90231.t1 | MTR_4g093770 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 2.87e-100 | 283 |
| MS.gene90231.t1 | MTR_4g093770 | 99.083 | 109 | 1 | 0 | 1 | 109 | 1 | 109 | 5.39e-72 | 211 |
| MS.gene90231.t1 | MTR_2g009710 | 54.167 | 120 | 45 | 3 | 25 | 137 | 47 | 163 | 3.90e-30 | 107 |
| MS.gene90231.t1 | MTR_2g009700 | 51.724 | 87 | 34 | 1 | 50 | 128 | 2 | 88 | 2.69e-19 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90231.t1 | AT5G09570 | 56.944 | 144 | 50 | 3 | 1 | 139 | 1 | 137 | 7.08e-52 | 161 |
| MS.gene90231.t1 | AT5G64400 | 72.043 | 93 | 24 | 1 | 47 | 139 | 52 | 142 | 4.31e-38 | 126 |
| MS.gene90231.t1 | AT5G64400 | 71.429 | 70 | 18 | 1 | 40 | 109 | 1 | 68 | 7.11e-22 | 84.7 |
| MS.gene90231.t1 | AT5G64400 | 71.429 | 63 | 16 | 1 | 47 | 109 | 52 | 112 | 2.20e-17 | 74.3 |
Find 40 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATGGCAGGTATGGCTTT+TGG | 0.258248 | 4.2:+19955941 | MS.gene90231:intron |
| GCACCGACTTCAAGCTCTTT+TGG | 0.290138 | 4.2:+19956064 | MS.gene90231:CDS |
| GGCGGTATTCTTAGTGGCAT+TGG | 0.395537 | 4.2:+19955815 | MS.gene90231:CDS |
| CTAGCATATCCATGTAAAAC+TGG | 0.399015 | 4.2:-19957018 | None:intergenic |
| CAGGGCCGTGGATGCTGTTG+TGG | 0.451033 | 4.2:+19955985 | MS.gene90231:CDS |
| ACCATGGCACGCCGTAGCTC+CGG | 0.466038 | 4.2:+19954832 | None:intergenic |
| CCACCACTCTGAGGATTAGC+TGG | 0.472443 | 4.2:-19955791 | None:intergenic |
| AACTACTGCTTCATGTTGAA+TGG | 0.473377 | 4.2:-19956017 | None:intergenic |
| TGCAATGGCACACAGGGCCG+TGG | 0.474780 | 4.2:+19955973 | MS.gene90231:CDS |
| CGTGGTGCAGCACGTGGAGC+TGG | 0.485293 | 4.2:-19955594 | None:intergenic |
| GGTGGCGGCGGTATTCTTAG+TGG | 0.495349 | 4.2:+19955809 | MS.gene90231:CDS |
| GCTGCACCACGTCCTGCTCC+AGG | 0.519152 | 4.2:+19955606 | MS.gene90231:CDS |
| TCCGGAGCTACGGCGTGCCA+TGG | 0.527864 | 4.2:-19954833 | None:intergenic |
| AAAGAGCTTGAAGTCGGTGC+AGG | 0.533911 | 4.2:-19956061 | None:intergenic |
| CTCTGAGGATTAGCTGGAGG+AGG | 0.538286 | 4.2:-19955785 | None:intergenic |
| AGGACCCACAACAGCATCCA+CGG | 0.556091 | 4.2:-19955990 | None:intergenic |
| GCTAATCCTCAGAGTGGTGG+CGG | 0.558257 | 4.2:+19955794 | MS.gene90231:CDS |
| GCAGGACGTGGTGCAGCACG+TGG | 0.561238 | 4.2:-19955600 | None:intergenic |
| TGCATGCAATATTCATTCAA+AGG | 0.562704 | 4.2:+19956093 | MS.gene90231:CDS |
| AGGGCCGTGGATGCTGTTGT+GGG | 0.564421 | 4.2:+19955986 | MS.gene90231:CDS |
| TGGAAGTGCAATGGCACACA+GGG | 0.567260 | 4.2:+19955967 | MS.gene90231:CDS |
| GAACGTTACCTCCGGAGCTA+CGG | 0.573066 | 4.2:-19954843 | None:intergenic |
| CATTAATATATACCTGGAGC+AGG | 0.580772 | 4.2:-19955618 | None:intergenic |
| ACATGAAGCAGTAGTTAATG+AGG | 0.581873 | 4.2:+19956024 | MS.gene90231:CDS |
| AATCCTCAGAGTGGTGGCGG+CGG | 0.582840 | 4.2:+19955797 | MS.gene90231:CDS |
| TATATACCTGGAGCAGGACG+TGG | 0.583895 | 4.2:-19955612 | None:intergenic |
| ATTGGTTCAACCATTGCTCA+AGG | 0.588907 | 4.2:+19955833 | MS.gene90231:CDS |
| CTGGAAGTGCAATGGCACAC+AGG | 0.589957 | 4.2:+19955966 | MS.gene90231:CDS |
| GCTTGACATACCTTGAGCAA+TGG | 0.600932 | 4.2:-19955843 | None:intergenic |
| ATGGCACGCCGTAGCTCCGG+AGG | 0.604368 | 4.2:+19954835 | MS.gene90231:CDS |
| TGCTGATCTCAGTTCCGTAG+TGG | 0.607249 | 4.2:-19956991 | None:intergenic |
| CCAGCTAATCCTCAGAGTGG+TGG | 0.634085 | 4.2:+19955791 | MS.gene90231:CDS |
| CTGCCAAAAGAGCTTGAAGT+CGG | 0.641855 | 4.2:-19956067 | None:intergenic |
| TTGCAGTGCATCAACCACTA+CGG | 0.648457 | 4.2:+19956977 | MS.gene90231:intron |
| GAGCAGTTACATACTCATTG+TGG | 0.664410 | 4.2:-19957065 | None:intergenic |
| CCACTCTGAGGATTAGCTGG+AGG | 0.669248 | 4.2:-19955788 | None:intergenic |
| GATTAGCTGGAGGAGGAGCG+TGG | 0.675718 | 4.2:-19955778 | None:intergenic |
| CCTCCAGCTAATCCTCAGAG+TGG | 0.682091 | 4.2:+19955788 | MS.gene90231:CDS |
| ATACCGCCGCCACCACTCTG+AGG | 0.688047 | 4.2:-19955800 | None:intergenic |
| GCTTCATGTTGAATGGTGCG+AGG | 0.729803 | 4.2:-19956010 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATTGTAACGATAAT+AGG | - | chr4.2:19954906-19954925 | None:intergenic | 15.0% |
| !! | AAATCTTAAATAGTAGTTAT+TGG | + | chr4.2:19956175-19956194 | MS.gene90231:intron | 15.0% |
| !! | AATTATGTTTGTATTCATAT+TGG | + | chr4.2:19956716-19956735 | MS.gene90231:intron | 15.0% |
| !! | ATTCAATCTAAGTATAAATT+AGG | - | chr4.2:19955235-19955254 | None:intergenic | 15.0% |
| !! | TTCAATCTAAGTATAAATTA+GGG | - | chr4.2:19955234-19955253 | None:intergenic | 15.0% |
| !!! | TTATTTTAAATTGCTGTATT+GGG | + | chr4.2:19955175-19955194 | MS.gene90231:intron | 15.0% |
| !!! | TTTATTTTAAATTGCTGTAT+TGG | + | chr4.2:19955174-19955193 | MS.gene90231:intron | 15.0% |
| !!! | TTTTGAAAAATTGTGTATTT+TGG | + | chr4.2:19955001-19955020 | MS.gene90231:intron | 15.0% |
| !! | AAATACAACATAAAACTGAA+AGG | - | chr4.2:19954930-19954949 | None:intergenic | 20.0% |
| !! | AATAAAAGTAAACCATTCAT+CGG | - | chr4.2:19955502-19955521 | None:intergenic | 20.0% |
| !! | AATAAAATAACAGATATCCA+AGG | - | chr4.2:19955160-19955179 | None:intergenic | 20.0% |
| !! | AATACAACATAAAACTGAAA+GGG | - | chr4.2:19954929-19954948 | None:intergenic | 20.0% |
| !! | ATAATTAAGATCATAGTTGT+TGG | - | chr4.2:19956677-19956696 | None:intergenic | 20.0% |
| !! | ATACTACATTAATATATACC+TGG | - | chr4.2:19955627-19955646 | None:intergenic | 20.0% |
| !! | TGGTACTAAATTTCAATTTA+TGG | + | chr4.2:19955925-19955944 | MS.gene90231:intron | 20.0% |
| !! | TTGTCTAAATAAGATATTGT+GGG | + | chr4.2:19955707-19955726 | MS.gene90231:intron | 20.0% |
| !!! | AGTTGAAAACAAATCTTTTA+AGG | - | chr4.2:19956260-19956279 | None:intergenic | 20.0% |
| !!! | TATTTAAGATTTAAACCAAC+AGG | - | chr4.2:19956167-19956186 | None:intergenic | 20.0% |
| !!! | TGAATGAAATTTTCATTTTC+TGG | + | chr4.2:19955900-19955919 | MS.gene90231:intron | 20.0% |
| ! | AAAATTTCTCAATGACAACA+AGG | - | chr4.2:19956912-19956931 | None:intergenic | 25.0% |
| ! | ACACAAAGAAAGAAAACAAT+AGG | - | chr4.2:19955558-19955577 | None:intergenic | 25.0% |
| ! | ACTAAATTTCAATTTATGGC+AGG | + | chr4.2:19955929-19955948 | MS.gene90231:intron | 25.0% |
| ! | CACAAAGAAAGAAAACAATA+GGG | - | chr4.2:19955557-19955576 | None:intergenic | 25.0% |
| ! | GCAAAGCAAAAAATATCTAA+AGG | - | chr4.2:19955134-19955153 | None:intergenic | 25.0% |
| ! | GCTAAAATAACTACGAAAAA+TGG | - | chr4.2:19955060-19955079 | None:intergenic | 25.0% |
| ! | GTTATAGTTTAGTAGGTTAT+TGG | + | chr4.2:19955353-19955372 | MS.gene90231:intron | 25.0% |
| ! | GTTGTCTAAATAAGATATTG+TGG | + | chr4.2:19955706-19955725 | MS.gene90231:intron | 25.0% |
| ! | TAATGTTATGATAATAGCTC+TGG | + | chr4.2:19955329-19955348 | MS.gene90231:intron | 25.0% |
| ! | TACTGTAAAATCTTTCAAAG+TGG | - | chr4.2:19956563-19956582 | None:intergenic | 25.0% |
| ! | TGTCTAAATAAGATATTGTG+GGG | + | chr4.2:19955708-19955727 | MS.gene90231:intron | 25.0% |
| ! | TGTGTATTCAATACTTGATA+TGG | + | chr4.2:19955282-19955301 | MS.gene90231:intron | 25.0% |
| !! | ATTGTTTTCTTTCTTTGTGT+AGG | + | chr4.2:19955558-19955577 | MS.gene90231:intron | 25.0% |
| !! | CAATATCTTATTTAGACAAC+AGG | - | chr4.2:19955706-19955725 | None:intergenic | 25.0% |
| !!! | CAAAGTGAAATTTTGATTGT+TGG | + | chr4.2:19955417-19955436 | MS.gene90231:intron | 25.0% |
| !!! | CTGTTTCTTTTCTTTTTGTA+AGG | + | chr4.2:19956648-19956667 | MS.gene90231:intron | 25.0% |
| !!! | GAAATTTTCATTTTCTGGTT+TGG | + | chr4.2:19955905-19955924 | MS.gene90231:intron | 25.0% |
| !!! | GATTTGTTTTCAACTTTGAA+AGG | + | chr4.2:19956265-19956284 | MS.gene90231:intron | 25.0% |
| !!! | TCTTCTAATGTTTTGAAAAC+CGG | + | chr4.2:19956305-19956324 | MS.gene90231:intron | 25.0% |
| AAACCTGCAAATACTATAAC+AGG | + | chr4.2:19956465-19956484 | MS.gene90231:intron | 30.0% | |
| ATTTCAATTTATGGCAGGTA+TGG | + | chr4.2:19955934-19955953 | MS.gene90231:intron | 30.0% | |
| GATTCATAACTTCCCATAAT+CGG | - | chr4.2:19955095-19955114 | None:intergenic | 30.0% | |
| TACTGTAAAGTCTTTCAAAC+TGG | - | chr4.2:19956422-19956441 | None:intergenic | 30.0% | |
| TAGGAAAACAACATACATCT+TGG | - | chr4.2:19956123-19956142 | None:intergenic | 30.0% | |
| TGCATGCAATATTCATTCAA+AGG | + | chr4.2:19956093-19956112 | MS.gene90231:CDS | 30.0% | |
| TTATTGCTTGAAATTCCTGT+TGG | + | chr4.2:19956149-19956168 | MS.gene90231:intron | 30.0% | |
| ! | TCATTTAAGATCATTGCTGT+TGG | - | chr4.2:19956532-19956551 | None:intergenic | 30.0% |
| ! | TTCGCATACTATCTTTTCTA+GGG | + | chr4.2:19954949-19954968 | MS.gene90231:intron | 30.0% |
| ! | TTTCGCATACTATCTTTTCT+AGG | + | chr4.2:19954948-19954967 | MS.gene90231:intron | 30.0% |
| !! | ATAACAATAAAAGAAGCACC+AGG | - | chr4.2:19955530-19955549 | None:intergenic | 30.0% |
| !! | GTTTTCGTGTTTTTTAGCAA+AGG | - | chr4.2:19955665-19955684 | None:intergenic | 30.0% |
| !!! | ATTTTTTGCTTTGCATTCCT+TGG | + | chr4.2:19955140-19955159 | MS.gene90231:intron | 30.0% |
| !!! | CTTTTCTAGGGTTTTCTTTT+CGG | + | chr4.2:19954961-19954980 | MS.gene90231:intron | 30.0% |
| !!! | GTGAAATTTTGATTGTTGGT+TGG | + | chr4.2:19955421-19955440 | MS.gene90231:intron | 30.0% |
| !!! | TAAATGTTGCTTTTGCGTAT+TGG | + | chr4.2:19955870-19955889 | MS.gene90231:intron | 30.0% |
| !!! | TGTATGTTGTTTTCCTAGTT+CGG | + | chr4.2:19956126-19956145 | MS.gene90231:intron | 30.0% |
| AACTACTGCTTCATGTTGAA+TGG | - | chr4.2:19956020-19956039 | None:intergenic | 35.0% | |
| ACATGAAGCAGTAGTTAATG+AGG | + | chr4.2:19956024-19956043 | MS.gene90231:CDS | 35.0% | |
| CATTAATATATACCTGGAGC+AGG | - | chr4.2:19955621-19955640 | None:intergenic | 35.0% | |
| CTAGCATATCCATGTAAAAC+TGG | - | chr4.2:19957021-19957040 | None:intergenic | 35.0% | |
| GTTAACAGTCCCAATAACAA+AGG | - | chr4.2:19956788-19956807 | None:intergenic | 35.0% | |
| TGATTCTCTTCTCCGATTAT+GGG | + | chr4.2:19955080-19955099 | MS.gene90231:intron | 35.0% | |
| TTTCAAGCAATAACCGAACT+AGG | - | chr4.2:19956142-19956161 | None:intergenic | 35.0% | |
| ! | TATGACCTTGCCTTTGTTAT+TGG | + | chr4.2:19956775-19956794 | MS.gene90231:intron | 35.0% |
| ! | TTTGAGATCATCATAGCTGT+TGG | - | chr4.2:19956388-19956407 | None:intergenic | 35.0% |
| !! | ATGACCTTGCCTTTGTTATT+GGG | + | chr4.2:19956776-19956795 | MS.gene90231:intron | 35.0% |
| !! | CTCTGGAGTTATAGTTTAGT+AGG | + | chr4.2:19955346-19955365 | MS.gene90231:intron | 35.0% |
| !! | GATTTGTTGATGCATGTGTT+TGG | + | chr4.2:19955304-19955323 | MS.gene90231:intron | 35.0% |
| !! | GTTGGTTGGTTTGATCAATA+TGG | + | chr4.2:19955435-19955454 | MS.gene90231:intron | 35.0% |
| !! | GTTTACTTTTATTCTCTGCC+TGG | + | chr4.2:19955509-19955528 | MS.gene90231:intron | 35.0% |
| !! | TGTATTGGGTTGTTTTGTTG+TGG | + | chr4.2:19955189-19955208 | MS.gene90231:intron | 35.0% |
| AAACCAACAGACGCTATAAC+AGG | + | chr4.2:19956606-19956625 | MS.gene90231:intron | 40.0% | |
| AAACCGGCAAACACTATAAC+AGG | + | chr4.2:19956321-19956340 | MS.gene90231:intron | 40.0% | |
| ACAGGCTGCTAACATTGATA+TGG | + | chr4.2:19956483-19956502 | MS.gene90231:intron | 40.0% | |
| ATCTCAAGTGAACCGATGAA+TGG | + | chr4.2:19955487-19955506 | MS.gene90231:intron | 40.0% | |
| CAGCCTGTTATAGTATTTGC+AGG | - | chr4.2:19956471-19956490 | None:intergenic | 40.0% | |
| CTGATTCTCTTCTCCGATTA+TGG | + | chr4.2:19955079-19955098 | MS.gene90231:intron | 40.0% | |
| ! | ATTGGTTCAACCATTGCTCA+AGG | + | chr4.2:19955833-19955852 | MS.gene90231:CDS | 40.0% |
| ! | GCTGTTGGTTGTCTTTCAAA+AGG | - | chr4.2:19956373-19956392 | None:intergenic | 40.0% |
| ! | TCCAGAGTTCTTTTTGCACT+CGG | - | chr4.2:19957044-19957063 | None:intergenic | 40.0% |
| ! | TTATGGCAGGTATGGCTTTT+GGG | + | chr4.2:19955942-19955961 | MS.gene90231:intron | 40.0% |
| ! | TTTATGGCAGGTATGGCTTT+TGG | + | chr4.2:19955941-19955960 | MS.gene90231:intron | 40.0% |
| !! | ATTGGGTTGTTTTGTTGTGG+AGG | + | chr4.2:19955192-19955211 | MS.gene90231:intron | 40.0% |
| !! | TTCATCGGTTCACTTGAGAT+CGG | - | chr4.2:19955487-19955506 | None:intergenic | 40.0% |
| ACAGGCTGCTAACATTGCTA+TGG | + | chr4.2:19956339-19956358 | MS.gene90231:intron | 45.0% | |
| CAGCCTGTTATAGTGTTTGC+CGG | - | chr4.2:19956327-19956346 | None:intergenic | 45.0% | |
| CAGTCCCAATAACAAAGGCA+AGG | - | chr4.2:19956783-19956802 | None:intergenic | 45.0% | |
| CTGCCAAAAGAGCTTGAAGT+CGG | - | chr4.2:19956070-19956089 | None:intergenic | 45.0% | |
| GCTTGACATACCTTGAGCAA+TGG | - | chr4.2:19955846-19955865 | None:intergenic | 45.0% | |
| TGAGATGAGAACGTTACCTC+CGG | - | chr4.2:19954854-19954873 | None:intergenic | 45.0% | |
| TTGCAGTGCATCAACCACTA+CGG | + | chr4.2:19956977-19956996 | MS.gene90231:intron | 45.0% | |
| ! | CAGCAAGTGCCAGTTTTACA+TGG | + | chr4.2:19957009-19957028 | MS.gene90231:CDS | 45.0% |
| ! | GCTGTTGGTTGCATTTCAGA+AGG | - | chr4.2:19956517-19956536 | None:intergenic | 45.0% |
| !!! | TTTTGGGACTGGAAGTGCAA+TGG | + | chr4.2:19955958-19955977 | MS.gene90231:CDS | 45.0% |
| AAAGAGCTTGAAGTCGGTGC+AGG | - | chr4.2:19956064-19956083 | None:intergenic | 50.0% | |
| CAGCCTGTTATAGCGTCTGT+TGG | - | chr4.2:19956612-19956631 | None:intergenic | 50.0% | |
| GCCGAGTGCAAAAAGAACTC+TGG | + | chr4.2:19957040-19957059 | MS.gene90231:CDS | 50.0% | |
| GCTTCATGTTGAATGGTGCG+AGG | - | chr4.2:19956013-19956032 | None:intergenic | 50.0% | |
| GGCGGTATTCTTAGTGGCAT+TGG | + | chr4.2:19955815-19955834 | MS.gene90231:CDS | 50.0% | |
| TATATACCTGGAGCAGGACG+TGG | - | chr4.2:19955615-19955634 | None:intergenic | 50.0% | |
| TGCTGATCTCAGTTCCGTAG+TGG | - | chr4.2:19956994-19957013 | None:intergenic | 50.0% | |
| ! | TGGAAGTGCAATGGCACACA+GGG | + | chr4.2:19955967-19955986 | MS.gene90231:CDS | 50.0% |
| !!! | GCACCGACTTCAAGCTCTTT+TGG | + | chr4.2:19956064-19956083 | MS.gene90231:CDS | 50.0% |
| AGGACCCACAACAGCATCCA+CGG | - | chr4.2:19955993-19956012 | None:intergenic | 55.0% | |
| CCAGCTAATCCTCAGAGTGG+TGG | + | chr4.2:19955791-19955810 | MS.gene90231:CDS | 55.0% | |
| CCTCCAGCTAATCCTCAGAG+TGG | + | chr4.2:19955788-19955807 | MS.gene90231:CDS | 55.0% | |
| GAACGTTACCTCCGGAGCTA+CGG | - | chr4.2:19954846-19954865 | None:intergenic | 55.0% | |
| GCTAATCCTCAGAGTGGTGG+CGG | + | chr4.2:19955794-19955813 | MS.gene90231:CDS | 55.0% | |
| ! | CCACCACTCTGAGGATTAGC+TGG | - | chr4.2:19955794-19955813 | None:intergenic | 55.0% |
| ! | CTGGAAGTGCAATGGCACAC+AGG | + | chr4.2:19955966-19955985 | MS.gene90231:CDS | 55.0% |
| !! | CCACTCTGAGGATTAGCTGG+AGG | - | chr4.2:19955791-19955810 | None:intergenic | 55.0% |
| !! | CTCTGAGGATTAGCTGGAGG+AGG | - | chr4.2:19955788-19955807 | None:intergenic | 55.0% |
| !!! | GCAGGTATGGCTTTTGGGAC+TGG | + | chr4.2:19955947-19955966 | MS.gene90231:intron | 55.0% |
| AGGGCCGTGGATGCTGTTGT+GGG | + | chr4.2:19955986-19956005 | MS.gene90231:CDS | 60.0% | |
| ! | GATTAGCTGGAGGAGGAGCG+TGG | - | chr4.2:19955781-19955800 | None:intergenic | 60.0% |
| ! | GGTGGCGGCGGTATTCTTAG+TGG | + | chr4.2:19955809-19955828 | MS.gene90231:CDS | 60.0% |
| !! | AATCCTCAGAGTGGTGGCGG+CGG | + | chr4.2:19955797-19955816 | MS.gene90231:CDS | 60.0% |
| ATACCGCCGCCACCACTCTG+AGG | - | chr4.2:19955803-19955822 | None:intergenic | 65.0% | |
| CAGGGCCGTGGATGCTGTTG+TGG | + | chr4.2:19955985-19956004 | MS.gene90231:CDS | 65.0% | |
| TGCAATGGCACACAGGGCCG+TGG | + | chr4.2:19955973-19955992 | MS.gene90231:CDS | 65.0% | |
| ATGGCACGCCGTAGCTCCGG+AGG | + | chr4.2:19954835-19954854 | MS.gene90231:CDS | 70.0% | |
| CGTGGTGCAGCACGTGGAGC+TGG | - | chr4.2:19955597-19955616 | None:intergenic | 70.0% | |
| GCAGGACGTGGTGCAGCACG+TGG | - | chr4.2:19955603-19955622 | None:intergenic | 70.0% | |
| GCTGCACCACGTCCTGCTCC+AGG | + | chr4.2:19955606-19955625 | MS.gene90231:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 19954835 | 19957081 | 19954835 | ID=MS.gene90231 |
| chr4.2 | mRNA | 19954835 | 19957081 | 19954835 | ID=MS.gene90231.t1;Parent=MS.gene90231 |
| chr4.2 | exon | 19954835 | 19954856 | 19954835 | ID=MS.gene90231.t1.exon1;Parent=MS.gene90231.t1 |
| chr4.2 | CDS | 19954835 | 19954856 | 19954835 | ID=cds.MS.gene90231.t1;Parent=MS.gene90231.t1 |
| chr4.2 | exon | 19955580 | 19955627 | 19955580 | ID=MS.gene90231.t1.exon2;Parent=MS.gene90231.t1 |
| chr4.2 | CDS | 19955580 | 19955627 | 19955580 | ID=cds.MS.gene90231.t1;Parent=MS.gene90231.t1 |
| chr4.2 | exon | 19955774 | 19955854 | 19955774 | ID=MS.gene90231.t1.exon3;Parent=MS.gene90231.t1 |
| chr4.2 | CDS | 19955774 | 19955854 | 19955774 | ID=cds.MS.gene90231.t1;Parent=MS.gene90231.t1 |
| chr4.2 | exon | 19955951 | 19956126 | 19955951 | ID=MS.gene90231.t1.exon4;Parent=MS.gene90231.t1 |
| chr4.2 | CDS | 19955951 | 19956126 | 19955951 | ID=cds.MS.gene90231.t1;Parent=MS.gene90231.t1 |
| chr4.2 | exon | 19956983 | 19957081 | 19956983 | ID=MS.gene90231.t1.exon5;Parent=MS.gene90231.t1 |
| chr4.2 | CDS | 19956983 | 19957081 | 19956983 | ID=cds.MS.gene90231.t1;Parent=MS.gene90231.t1 |
| Gene Sequence |
| Protein sequence |
