AlfalfaGEDB | MS.gene062836

M. sativa cultivar XinJiangDaYe / MS.gene062836

KEGG: K11517
GO: GO:0003674 GO:0003824 GO:0016491
PFAM: PF01070.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062836.t1	RXH86438.1	67	224	27	3	1	178	336	558	1.20E-69	272.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062836.t1	Q9LRR9	41.1	365	26	3	3	178	2	366	1.1e-55	217.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062836.t1	A0A498ISM6	67.0	224	27	3	1	178	336	558	8.9e-70	272.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049222	MS.gene062836	0.810899	9.16E-51	-1.69E-46
MS.gene049320	MS.gene062836	0.809393	1.93E-50	-1.69E-46
MS.gene049369	MS.gene062836	0.800197	1.61E-48	-1.69E-46
MS.gene050747	MS.gene062836	0.84354	1.32E-58	-1.69E-46
MS.gene050772	MS.gene062836	0.829159	6.02E-55	-1.69E-46
MS.gene050950	MS.gene062836	0.832159	1.11E-55	-1.69E-46
MS.gene05100	MS.gene062836	0.819458	1.15E-52	-1.69E-46
MS.gene05105	MS.gene062836	0.811254	7.67E-51	-1.69E-46
MS.gene052421	MS.gene062836	0.817961	2.51E-52	-1.69E-46
MS.gene053213	MS.gene062836	0.827515	1.50E-54	-1.69E-46
MS.gene053286	MS.gene062836	0.818913	1.53E-52	-1.69E-46
MS.gene053436	MS.gene062836	0.821544	3.82E-53	-1.69E-46
MS.gene053574	MS.gene062836	0.829777	4.26E-55	-1.69E-46
MS.gene053626	MS.gene062836	0.825115	5.59E-54	-1.69E-46
MS.gene053632	MS.gene062836	0.813391	2.62E-51	-1.69E-46
MS.gene053916	MS.gene062836	0.825932	3.58E-54	-1.69E-46
MS.gene054408	MS.gene062836	0.859882	3.04E-63	-1.69E-46
MS.gene05505	MS.gene062836	0.844187	8.83E-59	-1.69E-46
MS.gene055212	MS.gene062836	0.804632	1.97E-49	-1.69E-46
MS.gene055224	MS.gene062836	0.800183	1.62E-48	-1.69E-46
MS.gene055750	MS.gene062836	0.800623	1.32E-48	-1.69E-46
MS.gene056446	MS.gene062836	0.812065	5.11E-51	-1.69E-46
MS.gene056449	MS.gene062836	0.811295	7.52E-51	-1.69E-46
MS.gene056657	MS.gene062836	0.815141	1.08E-51	-1.69E-46
MS.gene057416	MS.gene062836	0.804891	1.74E-49	-1.69E-46
MS.gene05787	MS.gene062836	0.818872	1.56E-52	-1.69E-46
MS.gene058130	MS.gene062836	0.84639	2.24E-59	-1.69E-46
MS.gene059367	MS.gene062836	0.806859	6.70E-50	-1.69E-46
MS.gene059368	MS.gene062836	0.806621	7.53E-50	-1.69E-46
MS.gene059667	MS.gene062836	0.818262	2.15E-52	-1.69E-46
MS.gene059711	MS.gene062836	0.812828	3.48E-51	-1.69E-46
MS.gene06092	MS.gene062836	0.815855	7.47E-52	-1.69E-46
MS.gene06097	MS.gene062836	0.814824	1.27E-51	-1.69E-46
MS.gene061041	MS.gene062836	0.805018	1.63E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062836.t1	MTR_2g070420	94.898	98	3	2	88	183	275	372	2.61e-57	184
MS.gene062836.t1	MTR_2g070420	90.909	88	8	0	1	88	1	88	2.65e-52	171
MS.gene062836.t1	MTR_1g072440	58.333	84	33	1	10	93	4	85	3.49e-28	101

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062836.t1	AT4G18360	85.057	87	13	0	3	89	2	88	4.19e-49	160
MS.gene062836.t1	AT4G18360	86.047	86	12	0	3	88	2	87	8.07e-49	160
MS.gene062836.t1	AT3G14420	83.908	87	14	0	3	89	2	88	1.07e-48	162
MS.gene062836.t1	AT3G14420	82.796	93	14	2	88	178	274	366	2.56e-45	153
MS.gene062836.t1	AT3G14420	83.908	87	14	0	3	89	2	88	1.07e-48	162
MS.gene062836.t1	AT3G14420	82.796	93	14	2	88	178	274	366	2.56e-45	153
MS.gene062836.t1	AT3G14420	83.908	87	14	0	3	89	2	88	1.11e-48	162
MS.gene062836.t1	AT3G14420	82.796	93	14	2	88	178	274	366	2.51e-45	153
MS.gene062836.t1	AT4G18360	85.057	87	13	0	3	89	2	88	3.34e-48	160
MS.gene062836.t1	AT4G18360	80.488	82	15	1	94	174	281	362	1.65e-40	140
MS.gene062836.t1	AT4G18360	85.057	87	13	0	3	89	2	88	3.34e-48	160
MS.gene062836.t1	AT4G18360	80.488	82	15	1	94	174	281	362	1.65e-40	140
MS.gene062836.t1	AT3G14415	80.460	87	17	0	3	89	2	88	2.53e-46	155
MS.gene062836.t1	AT3G14415	82.796	93	14	2	88	178	274	366	1.84e-45	153
MS.gene062836.t1	AT3G14415	80.460	87	17	0	3	89	2	88	2.53e-46	155
MS.gene062836.t1	AT3G14415	82.796	93	14	2	88	178	274	366	1.84e-45	153
MS.gene062836.t1	AT3G14415	80.460	87	17	0	3	89	2	88	3.11e-46	155
MS.gene062836.t1	AT3G14415	82.796	93	14	2	88	178	280	372	1.99e-45	154
MS.gene062836.t1	AT3G14420	82.796	93	14	2	88	178	255	347	1.93e-45	153
MS.gene062836.t1	AT3G14420	85.507	69	10	0	21	89	1	69	3.46e-37	131
MS.gene062836.t1	AT3G14420	82.796	93	14	2	88	178	267	359	2.84e-45	153
MS.gene062836.t1	AT3G14420	85.714	42	6	0	48	89	40	81	7.89e-18	80.1
MS.gene062836.t1	AT3G14420	82.796	93	14	2	88	178	273	365	4.28e-45	152
MS.gene062836.t1	AT3G14420	85.714	42	6	0	48	89	46	87	9.06e-18	80.1
MS.gene062836.t1	AT3G14130	62.921	89	33	0	1	89	1	89	5.74e-36	129
MS.gene062836.t1	AT3G14130	61.111	90	31	3	79	166	265	352	1.31e-29	112
MS.gene062836.t1	AT3G14130	62.921	89	33	0	1	89	1	89	5.74e-36	129
MS.gene062836.t1	AT3G14130	61.111	90	31	3	79	166	265	352	1.31e-29	112
MS.gene062836.t1	AT3G14150	62.921	89	33	0	1	89	1	89	1.58e-35	127
MS.gene062836.t1	AT3G14150	68.919	74	22	1	94	166	279	352	5.29e-29	110
MS.gene062836.t1	AT3G14150	62.921	89	33	0	1	89	1	89	1.58e-35	127
MS.gene062836.t1	AT3G14150	68.919	74	22	1	94	166	279	352	5.29e-29	110
MS.gene062836.t1	AT3G14130	61.111	90	31	3	79	166	157	244	2.43e-30	111
MS.gene062836.t1	AT3G14130	61.111	90	31	3	79	166	221	308	7.66e-30	112
MS.gene062836.t1	AT3G14130	71.429	42	12	0	48	89	4	45	2.13e-13	67.4
MS.gene062836.t1	AT3G14150	68.919	74	22	1	94	166	171	244	1.24e-29	109
MS.gene062836.t1	AT3G14150	68.919	74	22	1	94	166	171	244	1.24e-29	109
MS.gene062836.t1	AT3G14150	68.919	74	22	1	94	166	193	266	2.07e-29	109
MS.gene062836.t1	AT3G14150	68.919	74	22	1	94	166	193	266	2.07e-29	109
MS.gene062836.t1	AT3G14150	68.919	74	22	1	94	166	193	266	2.07e-29	109

Find 44 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATGAAATCTTACAAAATTC+TGG	0.214691	2.4:+25030984	None:intergenic
TCCAACTGCTATGCAGAAAA+TGG	0.302540	2.4:-25030711	MS.gene062836:CDS
TTCCTCATACTCACTGATAT+TGG	0.304687	2.4:+25031101	None:intergenic
GTCTTCAAGGCTTTGGCACT+TGG	0.341823	2.4:-25030008	MS.gene062836:CDS
AACCGATGTCTTCAAGGCTT+TGG	0.389473	2.4:-25030015	MS.gene062836:CDS
GCTTTGGCACTTGGAGCCTC+TGG	0.390736	2.4:-25029999	MS.gene062836:CDS
TAGTAGTCAAACACCATCTT+TGG	0.408015	2.4:+25031060	None:intergenic
TGATCACATTGTTGCTGATT+GGG	0.416794	2.4:-25028913	MS.gene062836:CDS
CCGCGGAACCGATGTCTTCA+AGG	0.425005	2.4:-25030021	MS.gene062836:CDS
ACTCATCACATAACATTTGA+AGG	0.437099	2.4:+25028988	None:intergenic
ACGCCCTGTGGTTTACTCCT+TGG	0.445382	2.4:-25029042	MS.gene062836:CDS
ATCTTACAAAATTCTGGAAA+AGG	0.450415	2.4:+25030990	None:intergenic
GTGATCACATTGTTGCTGAT+TGG	0.453243	2.4:-25028914	MS.gene062836:CDS
AACCAATATCAGTGAGTATG+AGG	0.469087	2.4:-25031103	MS.gene062836:CDS
GCAGTTGGAGCAATCATGAT+TGG	0.475878	2.4:+25030725	None:intergenic
GAGTTAACAATGGCTTTAAG+TGG	0.494236	2.4:-25028963	MS.gene062836:CDS
AACTTCTCCTTCAGCAGCCA+AGG	0.501952	2.4:+25029025	None:intergenic
GTTTACTCCTTGGCTGCTGA+AGG	0.504748	2.4:-25029032	MS.gene062836:CDS
GACATGTCAACTACTGTCCT+TGG	0.511523	2.4:-25030764	MS.gene062836:CDS
AGACCACTGGTCCTCAGCAC+CGG	0.513114	2.4:+25031032	None:intergenic
CATAATCTTGGTATGGCACG+TGG	0.518427	2.4:+25028873	None:intergenic
TTGGCTGCTGAAGGAGAAGT+TGG	0.522862	2.4:-25029023	MS.gene062836:CDS
GTGTTTGACTACTATGCATC+CGG	0.541451	2.4:-25031051	MS.gene062836:CDS
GCAGCCAAGGAGTAAACCAC+AGG	0.547828	2.4:+25029038	None:intergenic
AAGTGGATGCCGCTCGCTCA+AGG	0.552735	2.4:-25028946	MS.gene062836:CDS
AGGAGAAGTTGGTGTAAGAA+AGG	0.558181	2.4:-25029012	MS.gene062836:CDS
AAAGCAGAAATTGCCAAAGA+TGG	0.563585	2.4:-25031073	MS.gene062836:CDS
CAGAAAATGGCTCATCCCGA+GGG	0.577158	2.4:-25030698	MS.gene062836:intron
TGGAGCAATCATGATTGGCA+TGG	0.601089	2.4:+25030730	None:intergenic
TAGGTTGTGAAAGCTGCTCA+AGG	0.605864	2.4:-25030074	MS.gene062836:intron
CCTTGAAGACATCGGTTCCG+CGG	0.610628	2.4:+25030021	None:intergenic
CTACTATGCATCCGGTGCTG+AGG	0.615803	2.4:-25031043	MS.gene062836:CDS
CATCCGGTGCTGAGGACCAG+TGG	0.616576	2.4:-25031035	MS.gene062836:CDS
GCAGAAAATGGCTCATCCCG+AGG	0.619668	2.4:-25030699	MS.gene062836:CDS
GAGTGATTTCCTTGAGCGAG+CGG	0.625311	2.4:+25028937	None:intergenic
TGGCACGTGGATTAACGCGA+GGG	0.635630	2.4:+25028886	None:intergenic
TGTCTAGATTGGACGCCCTG+TGG	0.636000	2.4:-25029054	MS.gene062836:intron
ATGGCACGTGGATTAACGCG+AGG	0.646281	2.4:+25028885	None:intergenic
TGCCAAAGCCTTGAAGACAT+CGG	0.666124	2.4:+25030013	None:intergenic
TGATGAGTTTGAGTTAACAA+TGG	0.667490	2.4:-25028973	MS.gene062836:CDS
CAGCCAAGGAGTAAACCACA+GGG	0.690151	2.4:+25029039	None:intergenic
GGCACGTGGATTAACGCGAG+GGG	0.697617	2.4:+25028887	None:intergenic
TTGGATGGAGGTGTACGCCG+CGG	0.727565	2.4:-25030038	MS.gene062836:CDS
AATACTCTTAACGATGCCAG+AGG	0.738860	2.4:+25029983	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATATATATATATATATATA+TGG	-	chr2.4:25030322-25030341	MS.gene062836:intron	0.0%
!!	ATAGGAACATAAAAATAATT+GGG	-	chr2.4:25030394-25030413	MS.gene062836:intron	15.0%
!!	TATAGGAACATAAAAATAAT+TGG	-	chr2.4:25030393-25030412	MS.gene062836:intron	15.0%
!!!	AAAGTAAAATTTGTTAACAA+TGG	+	chr2.4:25030913-25030932	None:intergenic	15.0%
!!!	CAAATTTTACTATTGTATTT+TGG	-	chr2.4:25030744-25030763	MS.gene062836:CDS	15.0%
!!!	TATAAGTTTGTTTTTAAAGT+TGG	+	chr2.4:25030200-25030219	None:intergenic	15.0%
!!	ACAACTTATGATATGTTTAT+AGG	-	chr2.4:25029628-25029647	MS.gene062836:intron	20.0%
!!	AGTAAAATTTGTGGTATATA+AGG	+	chr2.4:25030867-25030886	None:intergenic	20.0%
!!	CAATTATTCTATATCCAAAA+GGG	+	chr2.4:25029467-25029486	None:intergenic	20.0%
!!	CATAATAAAGTAACATAGTT+TGG	+	chr2.4:25029081-25029100	None:intergenic	20.0%
!!	GGTCAAATTTCATATTATTA+GGG	-	chr2.4:25030616-25030635	MS.gene062836:intron	20.0%
!!	TATAGTAAAGTAACATAGTT+TGG	+	chr2.4:25029055-25029074	None:intergenic	20.0%
!!	TATATATATATGGACACTAT+AGG	-	chr2.4:25030376-25030395	MS.gene062836:intron	20.0%
!!	TATGAAATCTTACAAAATTC+TGG	+	chr2.4:25029005-25029024	None:intergenic	20.0%
!!	TCAATTATTCTATATCCAAA+AGG	+	chr2.4:25029468-25029487	None:intergenic	20.0%
!!	TCTTAATTATACGTATACAA+TGG	-	chr2.4:25030717-25030736	MS.gene062836:CDS	20.0%
!!	TGGTCAAATTTCATATTATT+AGG	-	chr2.4:25030615-25030634	MS.gene062836:intron	20.0%
!!	TTGAATTGCAATTAACAATT+TGG	-	chr2.4:25030147-25030166	MS.gene062836:intron	20.0%
!!	TTTAGCAAGAAAACAAATTA+GGG	+	chr2.4:25030565-25030584	None:intergenic	20.0%
!!!	AAACATATCATAAGTTGTTT+TGG	+	chr2.4:25029626-25029645	None:intergenic	20.0%
!!!	AAATTTTACTTTGTCTAGAT+TGG	-	chr2.4:25030921-25030940	MS.gene062836:intron	20.0%
!!!	AATTCAAGTTAAGAAATATG+TGG	+	chr2.4:25030134-25030153	None:intergenic	20.0%
!!!	TTACTATTGTATTTTGGTAA+CGG	-	chr2.4:25030750-25030769	MS.gene062836:CDS	20.0%
!!!	TTTTAGCAAGAAAACAAATT+AGG	+	chr2.4:25030566-25030585	None:intergenic	20.0%
!!!	TTTTGTTGTTGAAATTACTT+AGG	-	chr2.4:25029893-25029912	MS.gene062836:intron	20.0%
!	AAATTTGTGGTATATAAGGT+TGG	+	chr2.4:25030863-25030882	None:intergenic	25.0%
!	ACTATACTTTACTTACATTC+TGG	-	chr2.4:25030595-25030614	MS.gene062836:intron	25.0%
!	AGACAACAAAGTAAAATTTG+TGG	+	chr2.4:25030876-25030895	None:intergenic	25.0%
!	CCAAGTGAATTTAAAGAAAA+AGG	+	chr2.4:25029321-25029340	None:intergenic	25.0%
!	TAAACATTTGTGTGACTATT+TGG	-	chr2.4:25029528-25029547	MS.gene062836:intron	25.0%
!	TGTTAATGTGCTGAAAAATA+TGG	-	chr2.4:25029146-25029165	MS.gene062836:intron	25.0%
!	TTGTTAATCAAATTCAGTCA+AGG	-	chr2.4:25030520-25030539	MS.gene062836:intron	25.0%
!!	ATCTTACAAAATTCTGGAAA+AGG	+	chr2.4:25028999-25029018	None:intergenic	25.0%
!!	CCTTTTTCTTTAAATTCACT+TGG	-	chr2.4:25029318-25029337	MS.gene062836:intron	25.0%
!!	GTAACATAGTTTGGTAATAT+AGG	+	chr2.4:25029046-25029065	None:intergenic	25.0%
!!	TTAAGCTTATAATACCCTTT+TGG	-	chr2.4:25029450-25029469	MS.gene062836:intron	25.0%
!!!	AGTTTGTTTTTAAAGTTGGT+TGG	+	chr2.4:25030196-25030215	None:intergenic	25.0%
!!!	TACTATTGTATTTTGGTAAC+GGG	-	chr2.4:25030751-25030770	MS.gene062836:CDS	25.0%
!!!	TTTGTATTTCGTTGATAGTA+TGG	-	chr2.4:25030780-25030799	MS.gene062836:CDS	25.0%
	AAGCTATATTTGAGAGCTTA+TGG	+	chr2.4:25029671-25029690	None:intergenic	30.0%
	ACTCATCACATAACATTTGA+AGG	+	chr2.4:25031001-25031020	None:intergenic	30.0%
	ATATGGTTGACAAACATTAC+AGG	-	chr2.4:25029163-25029182	MS.gene062836:intron	30.0%
	GTATGAATTTGTATCCATTG+AGG	+	chr2.4:25030274-25030293	None:intergenic	30.0%
	TATTGTAGCAAAGTTCTACT+GGG	+	chr2.4:25030046-25030065	None:intergenic	30.0%
	TCAAGGATGAATAATTTGAG+TGG	-	chr2.4:25030537-25030556	MS.gene062836:intron	30.0%
	TTATTGTAGCAAAGTTCTAC+TGG	+	chr2.4:25030047-25030066	None:intergenic	30.0%
	TTGACAAACATTACAGGTTT+AGG	-	chr2.4:25029169-25029188	MS.gene062836:intron	30.0%
!	ATTCACTTGGATTTCTGAAA+TGG	-	chr2.4:25029331-25029350	MS.gene062836:intron	30.0%
!	ATTTTGTTCAATTCGATAGC+AGG	-	chr2.4:25029382-25029401	MS.gene062836:intron	30.0%
!	TCCATTGAGGTCATAATTTT+CGG	+	chr2.4:25030261-25030280	None:intergenic	30.0%
!	TGATGAGTTTGAGTTAACAA+TGG	-	chr2.4:25031013-25031032	MS.gene062836:CDS	30.0%
!	TTTTAACCCTCCGATTAATA+GGG	+	chr2.4:25030649-25030668	None:intergenic	30.0%
!!	ATTTTAACCCTCCGATTAAT+AGG	+	chr2.4:25030650-25030669	None:intergenic	30.0%
!!	TTCTAAAAGTACCTCTTCTA+AGG	+	chr2.4:25029803-25029822	None:intergenic	30.0%
	AAAGCAGAAATTGCCAAAGA+TGG	-	chr2.4:25028913-25028932	MS.gene062836:CDS	35.0%
	AACCAATATCAGTGAGTATG+AGG	-	chr2.4:25028883-25028902	MS.gene062836:CDS	35.0%
	ACACCTGAAAAAGTTTGAGA+AGG	-	chr2.4:25030439-25030458	MS.gene062836:intron	35.0%
	ACATTTCCCTATTAATCGGA+GGG	-	chr2.4:25030640-25030659	MS.gene062836:intron	35.0%
	AGAAAAAGGAATGATACCCT+CGG	+	chr2.4:25029307-25029326	None:intergenic	35.0%
	GATAACAACAGAACTAGTTG+TGG	+	chr2.4:25030699-25030718	None:intergenic	35.0%
	GTAGGTGTACAAAACATCAA+AGG	+	chr2.4:25029106-25029125	None:intergenic	35.0%
	GTTCTTGTTCTTAGAATCGT+AGG	+	chr2.4:25029124-25029143	None:intergenic	35.0%
	TAGTAGTCAAACACCATCTT+TGG	+	chr2.4:25028929-25028948	None:intergenic	35.0%
	TCATGCATGACATGAAATTG+TGG	-	chr2.4:25029422-25029441	MS.gene062836:intron	35.0%
	TTCCTCATACTCACTGATAT+TGG	+	chr2.4:25028888-25028907	None:intergenic	35.0%
!	CCATTGAGGTCATAATTTTC+GGG	+	chr2.4:25030260-25030279	None:intergenic	35.0%
!	TGATCACATTGTTGCTGATT+GGG	-	chr2.4:25031073-25031092	MS.gene062836:CDS	35.0%
!!	GAGTTAACAATGGCTTTAAG+TGG	-	chr2.4:25031023-25031042	MS.gene062836:CDS	35.0%
!!!	TGTATTTTGGTAACGGGAAA+TGG	-	chr2.4:25030757-25030776	MS.gene062836:CDS	35.0%
	AAAGGAGTTGGGTGATAAAG+AGG	+	chr2.4:25030818-25030837	None:intergenic	40.0%
	AATACTCTTAACGATGCCAG+AGG	+	chr2.4:25030006-25030025	None:intergenic	40.0%
	ACACCTCCATCCAAAAATAC+AGG	+	chr2.4:25029942-25029961	None:intergenic	40.0%
	CACATTTCCCTATTAATCGG+AGG	-	chr2.4:25030639-25030658	MS.gene062836:intron	40.0%
	CCCGAAAATTATGACCTCAA+TGG	-	chr2.4:25030257-25030276	MS.gene062836:intron	40.0%
	CCTGAAAAAGTTTGAGAAGG+AGG	-	chr2.4:25030442-25030461	MS.gene062836:intron	40.0%
	GAAAAAGGAATGATACCCTC+GGG	+	chr2.4:25029306-25029325	None:intergenic	40.0%
	GGGCACATTTCCCTATTAAT+CGG	-	chr2.4:25030636-25030655	MS.gene062836:intron	40.0%
	GGGTGGAAAATAAAGGAGTT+GGG	+	chr2.4:25030829-25030848	None:intergenic	40.0%
	GTCAGTAGCTAAGCTCAAAT+AGG	+	chr2.4:25029507-25029526	None:intergenic	40.0%
	GTGATCACATTGTTGCTGAT+TGG	-	chr2.4:25031072-25031091	MS.gene062836:CDS	40.0%
	GTGTTTGACTACTATGCATC+CGG	-	chr2.4:25028935-25028954	MS.gene062836:CDS	40.0%
	TCCAACTGCTATGCAGAAAA+TGG	-	chr2.4:25029275-25029294	MS.gene062836:intron	40.0%
!	GTCTATGCTTTAAGCGCTTA+TGG	+	chr2.4:25029745-25029764	None:intergenic	40.0%
!	TGTTTTCTTGAAGAGACCAC+TGG	+	chr2.4:25028970-25028989	None:intergenic	40.0%
!!	AGGAGAAGTTGGTGTAAGAA+AGG	-	chr2.4:25030974-25030993	MS.gene062836:intron	40.0%
!!	CCTCCTTCTCAAACTTTTTC+AGG	+	chr2.4:25030445-25030464	None:intergenic	40.0%
!!	TACCTCTTCTAAGGCACTTA+TGG	+	chr2.4:25029794-25029813	None:intergenic	40.0%
!!	TCAAGGTGCTCCTGTATTTT+TGG	-	chr2.4:25029929-25029948	MS.gene062836:intron	40.0%
!!!	GCATGGAAATTTTGAAGCCA+AGG	+	chr2.4:25029242-25029261	None:intergenic	40.0%
!!!	GGTCATAATTTTCGGGTAGT+TGG	+	chr2.4:25030253-25030272	None:intergenic	40.0%
!!!	TAATTTTCGGGTAGTTGGAG+AGG	+	chr2.4:25030248-25030267	None:intergenic	40.0%
	AACCGATGTCTTCAAGGCTT+TGG	-	chr2.4:25029971-25029990	MS.gene062836:intron	45.0%
	CACCATAAGTGCCTTAGAAG+AGG	-	chr2.4:25029789-25029808	MS.gene062836:intron	45.0%
	CATAATCTTGGTATGGCACG+TGG	+	chr2.4:25031116-25031135	None:intergenic	45.0%
	CGGGTGGAAAATAAAGGAGT+TGG	+	chr2.4:25030830-25030849	None:intergenic	45.0%
	GACATGTCAACTACTGTCCT+TGG	-	chr2.4:25029222-25029241	MS.gene062836:intron	45.0%
	GCAGTTGGAGCAATCATGAT+TGG	+	chr2.4:25029264-25029283	None:intergenic	45.0%
	TAGCAAAGTTCTACTGGGAG+AGG	+	chr2.4:25030041-25030060	None:intergenic	45.0%
	TAGGTTGTGAAAGCTGCTCA+AGG	-	chr2.4:25029912-25029931	MS.gene062836:intron	45.0%
	TGCCAAAGCCTTGAAGACAT+CGG	+	chr2.4:25029976-25029995	None:intergenic	45.0%
	TGGAGCAATCATGATTGGCA+TGG	+	chr2.4:25029259-25029278	None:intergenic	45.0%
!!	CTCTTCTAAGGCACTTATGG+TGG	+	chr2.4:25029791-25029810	None:intergenic	45.0%
!!	GCCATTTTCTGCATAGCAGT+TGG	+	chr2.4:25029279-25029298	None:intergenic	45.0%
!!	GGTATATAAGGTTGGTCTCG+TGG	+	chr2.4:25030855-25030874	None:intergenic	45.0%
!!!	GCTCCTGTATTTTTGGATGG+AGG	-	chr2.4:25029936-25029955	MS.gene062836:intron	45.0%
!!!	GGTGCTCCTGTATTTTTGGA+TGG	-	chr2.4:25029933-25029952	MS.gene062836:intron	45.0%
	AACTTCTCCTTCAGCAGCCA+AGG	+	chr2.4:25030964-25030983	None:intergenic	50.0%
	CAGAAAATGGCTCATCCCGA+GGG	-	chr2.4:25029288-25029307	MS.gene062836:intron	50.0%
	CAGCCAAGGAGTAAACCACA+GGG	+	chr2.4:25030950-25030969	None:intergenic	50.0%
	GAGTGATTTCCTTGAGCGAG+CGG	+	chr2.4:25031052-25031071	None:intergenic	50.0%
	GTTTACTCCTTGGCTGCTGA+AGG	-	chr2.4:25030954-25030973	MS.gene062836:intron	50.0%
	TTGGCTGCTGAAGGAGAAGT+TGG	-	chr2.4:25030963-25030982	MS.gene062836:intron	50.0%
!	GTCTTCAAGGCTTTGGCACT+TGG	-	chr2.4:25029978-25029997	MS.gene062836:intron	50.0%
!	GTGGCTCGGGTGGAAAATAA+AGG	+	chr2.4:25030836-25030855	None:intergenic	50.0%
!!	ATAAGGTTGGTCTCGTGGCT+CGG	+	chr2.4:25030850-25030869	None:intergenic	50.0%
	ACGCCCTGTGGTTTACTCCT+TGG	-	chr2.4:25030944-25030963	MS.gene062836:intron	55.0%
	GCAGAAAATGGCTCATCCCG+AGG	-	chr2.4:25029287-25029306	MS.gene062836:intron	55.0%
	GCAGCCAAGGAGTAAACCAC+AGG	+	chr2.4:25030951-25030970	None:intergenic	55.0%
	TGTCTAGATTGGACGCCCTG+TGG	-	chr2.4:25030932-25030951	MS.gene062836:intron	55.0%
!	ATGGCACGTGGATTAACGCG+AGG	+	chr2.4:25031104-25031123	None:intergenic	55.0%
!	CTACTATGCATCCGGTGCTG+AGG	-	chr2.4:25028943-25028962	MS.gene062836:CDS	55.0%
!	TGGCACGTGGATTAACGCGA+GGG	+	chr2.4:25031103-25031122	None:intergenic	55.0%
!!	CCTTGAAGACATCGGTTCCG+CGG	+	chr2.4:25029968-25029987	None:intergenic	55.0%
!!	TAAGGTTGGTCTCGTGGCTC+GGG	+	chr2.4:25030849-25030868	None:intergenic	55.0%
	AAGTGGATGCCGCTCGCTCA+AGG	-	chr2.4:25031040-25031059	MS.gene062836:CDS	60.0%
	AGACCACTGGTCCTCAGCAC+CGG	+	chr2.4:25028957-25028976	None:intergenic	60.0%
	CCGCGGAACCGATGTCTTCA+AGG	-	chr2.4:25029965-25029984	MS.gene062836:intron	60.0%
	GCTTTGGCACTTGGAGCCTC+TGG	-	chr2.4:25029987-25030006	MS.gene062836:intron	60.0%
!	GGCACGTGGATTAACGCGAG+GGG	+	chr2.4:25031102-25031121	None:intergenic	60.0%
!	TTGGATGGAGGTGTACGCCG+CGG	-	chr2.4:25029948-25029967	MS.gene062836:intron	60.0%
!	CATCCGGTGCTGAGGACCAG+TGG	-	chr2.4:25028951-25028970	MS.gene062836:CDS	65.0%
!!	GGTTGGTCTCGTGGCTCGGG+TGG	+	chr2.4:25030846-25030865	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	25028872	25031136	25028872	ID=MS.gene062836
chr2.4	mRNA	25028872	25031136	25028872	ID=MS.gene062836.t1;Parent=MS.gene062836
chr2.4	exon	25030997	25031136	25030997	ID=MS.gene062836.t1.exon1;Parent=MS.gene062836.t1
chr2.4	CDS	25030997	25031136	25030997	ID=cds.MS.gene062836.t1;Parent=MS.gene062836.t1
chr2.4	exon	25030699	25030823	25030699	ID=MS.gene062836.t1.exon2;Parent=MS.gene062836.t1
chr2.4	CDS	25030699	25030823	25030699	ID=cds.MS.gene062836.t1;Parent=MS.gene062836.t1
chr2.4	exon	25029995	25030083	25029995	ID=MS.gene062836.t1.exon3;Parent=MS.gene062836.t1
chr2.4	CDS	25029995	25030083	25029995	ID=cds.MS.gene062836.t1;Parent=MS.gene062836.t1
chr2.4	exon	25028872	25029069	25028872	ID=MS.gene062836.t1.exon4;Parent=MS.gene062836.t1
chr2.4	CDS	25028872	25029069	25028872	ID=cds.MS.gene062836.t1;Parent=MS.gene062836.t1

Gene Sequence

>MS.gene062836

ATGGGAGAGATAACCAATATCAGTGAGTATGAGGAAATTGCAAAGCAGAAATTGCCAAAGATGGTGTTTGACTACTATGCATCCGGTGCTGAGGACCAGTGGTCTCTTCAAGAAAACATAAATGCCTTTTCCAGAATTTTGTAAGATTTCATATAATTTATTTTTACAGCACCTATATTACCAAACTATGTTACTTTACTATATTACCAAACTATGTTACTTTATTATGCTCCTTTGATGTTTTGTACACCTACGATTCTAAGAACAAGAACAATGTTAATGTGCTGAAAAATATGGTTGACAAACATTACAGGTTTAGGCTGCGAATTCTTGTCGATGTGAGCAAGATAGACATGTCAACTACTGTCCTTGGCTTCAAAATTTCCATGCCAATCATGATTGCTCCAACTGCTATGCAGAAAATGGCTCATCCCGAGGGTATCATTCCTTTTTCTTTAAATTCACTTGGATTTCTGAAATGGAAAATGAAGTTGTTTAATTTTGTGCAATATTTTGTTCAATTCGATAGCAGGAAAACATTAATGAAAAATCATGCATGACATGAAATTGTGGAGAGTTTAAGCTTATAATACCCTTTTGGATATAGAATAATTGAGACAAAGATCATTAAGCCTATTTGAGCTTAGCTACTGACGTAAACATTTGTGTGACTATTTGGAAACAACTTATCTACTTGAATTATGTACAAAACAATAGTTGAGACAGAGATCATTAAGCTTATTAGTGCTTACCAAAACAACTTATGATATGTTTATAGGTTGCTTTTAGCTTATTTCCATAAGCTCTCAAATATAGCTTATGAAAACAGCTGCTCAAGTTATTTCCATAAGCTCTCAAATATAGCTTATACCATAAGCGCTTAAAGCATAGACACTTCTTGTATAAGTGCTTGTGTCCACCATAAGTGCCTTAGAAGAGGTACTTTTAGAATGTCAAGTTATTATATATCAGAATCAAATTGTATAAATCATTCTACATAATAAGATTGTTTGTATCATAATTTTGTTGTTGAAATTACTTAGGTTGTGAAAGCTGCTCAAGGTGCTCCTGTATTTTTGGATGGAGGTGTACGCCGCGGAACCGATGTCTTCAAGGCTTTGGCACTTGGAGCCTCTGGCATCGTTAAGAGTATTCTCATAACATAACCTCTCCCAGTAGAACTTTGCTACAATAATAGATACTCAAAATAAATTCTACAGCAGAAATTTCTTAACTTGAATTGCATTCACTCACGATTTCCACATATTTCTTAACTTGAATTGCAATTAACAATTTGGAGCTGCTGAGACTCTGATCTTAACCAACCAACTTTAAAAACAAACTTATAAGAATCATCTGATCTTGATTGAATACCTCTCCAACTACCCGAAAATTATGACCTCAATGGATACAAATTCATACTTTATCGATTGACTATAGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGGACACTATAGGAACATAAAAATAATTGGGAAGTTAAAGTTGTTAAGCTAGAACACCTGAAAAAGTTTGAGAAGGAGGTTCACGTCTCAAACTCTAGTGCTACTAACATAACATATTTACAACTATCAAAATATTGTTAATCAAATTCAGTCAAGGATGAATAATTTGAGTGGTACCCTAATTTGTTTTCTTGCTAAAACAGTTCTTGACTATACTTTACTTACATTCTGGTCAAATTTCATATTATTAGGGCACATTTCCCTATTAATCGGAGGGTTAAAATGAAAAAACAATAAATGATCACTATAACCACAACTAGTTCTGTTGTTATCTTAATTATACGTATACAATGGTTAACAAATTTTACTATTGTATTTTGGTAACGGGAAATGGTTTGTATTTCGTTGATAGTATGGATCGAACTCTCACCTCTTTATCACCCAACTCCTTTATTTTCCACCCGAGCCACGAGACCAACCTTATATACCACAAATTTTACTTTGTTGTCTTAATTTGATGTAAACCATTGTTAACAAATTTTACTTTGTCTAGATTGGACGCCCTGTGGTTTACTCCTTGGCTGCTGAAGGAGAAGTTGGTGTAAGAAAGGTCCTTCAAATGTTATGTGATGAGTTTGAGTTAACAATGGCTTTAAGTGGATGCCGCTCGCTCAAGGAAATCACTCGTGATCACATTGTTGCTGATTGGGACACCCCTCGCGTTAATCCACGTGCCATACCAAGATTATGA

Protein sequence

>MS.gene062836.t1

MGEITNISEYEEIAKQKLPKMVFDYYASGAEDQWSLQENINAFSRILFRLRILVDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEAAQGAPVFLDGGVRRGTDVFKALALGASGIIGRPVVYSLAAEGEVGVRKVLQMLCDEFELTMALSGCRSLKEITRDHIVADWDTPRVNPRAIPRL