Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063691.t1 | XP_003630883.1 | 94.1 | 185 | 9 | 2 | 1 | 185 | 87 | 269 | 1.30E-90 | 342.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063691.t1 | Q9FF31 | 27.4 | 164 | 111 | 5 | 1 | 159 | 89 | 249 | 4.0e-08 | 59.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063691.t1 | G7L9S6 | 94.1 | 185 | 9 | 2 | 1 | 185 | 87 | 269 | 9.3e-91 | 342.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049413 | MS.gene063691 | 0.830458 | 2.90E-55 | -1.69E-46 |
| MS.gene050238 | MS.gene063691 | 0.812808 | 3.52E-51 | -1.69E-46 |
| MS.gene050669 | MS.gene063691 | 0.800744 | 1.25E-48 | -1.69E-46 |
| MS.gene050961 | MS.gene063691 | 0.826243 | 3.02E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene063691 | 0.836132 | 1.12E-56 | -1.69E-46 |
| MS.gene051832 | MS.gene063691 | 0.805255 | 1.46E-49 | -1.69E-46 |
| MS.gene051959 | MS.gene063691 | 0.815376 | 9.54E-52 | -1.69E-46 |
| MS.gene051960 | MS.gene063691 | 0.813632 | 2.32E-51 | -1.69E-46 |
| MS.gene052016 | MS.gene063691 | 0.849754 | 2.64E-60 | -1.69E-46 |
| MS.gene052037 | MS.gene063691 | 0.813587 | 2.37E-51 | -1.69E-46 |
| MS.gene052493 | MS.gene063691 | 0.81261 | 3.89E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene063691 | 0.803967 | 2.71E-49 | -1.69E-46 |
| MS.gene052570 | MS.gene063691 | 0.82555 | 4.41E-54 | -1.69E-46 |
| MS.gene052679 | MS.gene063691 | 0.810067 | 1.39E-50 | -1.69E-46 |
| MS.gene052680 | MS.gene063691 | 0.800805 | 1.21E-48 | -1.69E-46 |
| MS.gene053601 | MS.gene063691 | 0.811475 | 6.87E-51 | -1.69E-46 |
| MS.gene053620 | MS.gene063691 | 0.829176 | 5.96E-55 | -1.69E-46 |
| MS.gene054178 | MS.gene063691 | 0.806848 | 6.74E-50 | -1.69E-46 |
| MS.gene05454 | MS.gene063691 | 0.803597 | 3.23E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene063691 | 0.81573 | 7.96E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene063691 | 0.848058 | 7.81E-60 | -1.69E-46 |
| MS.gene054893 | MS.gene063691 | 0.841532 | 4.49E-58 | -1.69E-46 |
| MS.gene055229 | MS.gene063691 | 0.820622 | 6.22E-53 | -1.69E-46 |
| MS.gene05539 | MS.gene063691 | 0.821095 | 4.84E-53 | -1.69E-46 |
| MS.gene056444 | MS.gene063691 | 0.809353 | 1.97E-50 | -1.69E-46 |
| MS.gene056467 | MS.gene063691 | 0.803921 | 2.77E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene063691 | 0.857812 | 1.26E-62 | -1.69E-46 |
| MS.gene057459 | MS.gene063691 | 0.800942 | 1.14E-48 | -1.69E-46 |
| MS.gene058289 | MS.gene063691 | 0.800562 | 1.36E-48 | -1.69E-46 |
| MS.gene059634 | MS.gene063691 | 0.822584 | 2.19E-53 | -1.69E-46 |
| MS.gene059774 | MS.gene063691 | 0.834486 | 2.92E-56 | -1.69E-46 |
| MS.gene060413 | MS.gene063691 | 0.80248 | 5.50E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene063691 | 0.801089 | 1.06E-48 | -1.69E-46 |
| MS.gene060697 | MS.gene063691 | 0.829701 | 4.44E-55 | -1.69E-46 |
| MS.gene061188 | MS.gene063691 | 0.811758 | 5.97E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063691.t1 | MTR_8g104520 | 94.054 | 185 | 9 | 2 | 1 | 185 | 87 | 269 | 1.14e-119 | 353 |
| MS.gene063691.t1 | MTR_7g082533 | 28.571 | 168 | 103 | 5 | 8 | 163 | 96 | 258 | 5.86e-14 | 68.6 |
| MS.gene063691.t1 | MTR_6g082870 | 29.557 | 203 | 111 | 8 | 1 | 185 | 105 | 293 | 1.17e-13 | 68.6 |
| MS.gene063691.t1 | MTR_7g082390 | 28.662 | 157 | 96 | 6 | 7 | 159 | 94 | 238 | 5.96e-12 | 62.8 |
| MS.gene063691.t1 | MTR_7g082540 | 28.662 | 157 | 96 | 6 | 7 | 159 | 91 | 235 | 6.17e-12 | 62.8 |
| MS.gene063691.t1 | MTR_6g083010 | 31.250 | 192 | 99 | 10 | 1 | 172 | 103 | 281 | 8.37e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAAATATTTATCATAT+AGG | - | 57340:11861-11880 | None:intergenic | 10.0% |
| !! | TGTCATAAAAAAAAAATTAA+CGG | + | 57340:12106-12125 | MS.gene063691:intron | 10.0% |
| !!! | ATAAATCATATTTTATTATC+AGG | - | 57340:14520-14539 | None:intergenic | 10.0% |
| !!! | TAAATCATATTTTATTATCA+GGG | - | 57340:14519-14538 | None:intergenic | 10.0% |
| !! | AAAAATAGTTGAAATCAATT+GGG | - | 57340:12920-12939 | None:intergenic | 15.0% |
| !! | ATAGAAACAATTAAATTATC+AGG | - | 57340:13043-13062 | None:intergenic | 15.0% |
| !! | ATGTTAAAAAAATCAAATAG+TGG | - | 57340:12540-12559 | None:intergenic | 15.0% |
| !! | TACTATTTATCTTCTTTAAA+AGG | + | 57340:12611-12630 | MS.gene063691:intron | 15.0% |
| !!! | AAAATCATTTTTTAAGAAAG+AGG | + | 57340:13229-13248 | MS.gene063691:intron | 15.0% |
| !!! | AGTTCTTTTTTTTTTTTTGA+AGG | - | 57340:14057-14076 | None:intergenic | 15.0% |
| !!! | ATTCTATAATTTTACTAAGT+GGG | + | 57340:11587-11606 | MS.gene063691:intron | 15.0% |
| !!! | TATATGACTTTTTTTTTTGA+GGG | + | 57340:11825-11844 | MS.gene063691:intron | 15.0% |
| !!! | TGATTTTTAATTTTATCTTC+TGG | - | 57340:13216-13235 | None:intergenic | 15.0% |
| !!! | TTTTTTTTGTGTTATATTGA+AGG | + | 57340:13374-13393 | MS.gene063691:intron | 15.0% |
| !! | AAAAACAAGTCATGTAAAAT+TGG | + | 57340:12746-12765 | MS.gene063691:intron | 20.0% |
| !! | AAAACAAGTCATGTAAAATT+GGG | + | 57340:12747-12766 | MS.gene063691:intron | 20.0% |
| !! | AAAAGTAACATCACTATATT+GGG | + | 57340:11973-11992 | MS.gene063691:intron | 20.0% |
| !! | AAAGAAGATAAATAGTAGAA+GGG | - | 57340:12608-12627 | None:intergenic | 20.0% |
| !! | AATAATTGAACTACTTTCAA+TGG | - | 57340:11096-11115 | None:intergenic | 20.0% |
| !! | AGTATGTATGTTAATAGATA+AGG | - | 57340:11647-11666 | None:intergenic | 20.0% |
| !! | ATAATTGAACTACTTTCAAT+GGG | - | 57340:11095-11114 | None:intergenic | 20.0% |
| !! | ATGATGTGTCATAATTTAAT+TGG | - | 57340:12517-12536 | None:intergenic | 20.0% |
| !! | ATGTATGTATATATGCAAAT+TGG | + | 57340:14474-14493 | MS.gene063691:intron | 20.0% |
| !! | ATTGAAAGTAGTTCAATTAT+TGG | + | 57340:11095-11114 | MS.gene063691:CDS | 20.0% |
| !! | CAAAAATAGTTGAAATCAAT+TGG | - | 57340:12921-12940 | None:intergenic | 20.0% |
| !! | CTCAAAAAAAAAAGTCATAT+AGG | - | 57340:11826-11845 | None:intergenic | 20.0% |
| !! | GTAATTATTATTCCTGATAT+TGG | - | 57340:12682-12701 | None:intergenic | 20.0% |
| !! | TAAAGAAGATAAATAGTAGA+AGG | - | 57340:12609-12628 | None:intergenic | 20.0% |
| !! | TAATAACTAATAAGTCAACA+TGG | - | 57340:14196-14215 | None:intergenic | 20.0% |
| !! | TAGAAATTGAACATAACATA+CGG | + | 57340:14257-14276 | MS.gene063691:intron | 20.0% |
| !! | TCAAAATGAATATAAACCAT+TGG | + | 57340:12843-12862 | MS.gene063691:intron | 20.0% |
| !! | TTAAGATTGAATATGAGTTA+TGG | - | 57340:13573-13592 | None:intergenic | 20.0% |
| !! | TTTAACATCATATGTTAACT+TGG | + | 57340:12552-12571 | MS.gene063691:intron | 20.0% |
| !!! | ACAATTAAATTATCAGGTTT+TGG | - | 57340:13037-13056 | None:intergenic | 20.0% |
| !!! | ATTTGTTCTAACAATTTTCA+TGG | - | 57340:10967-10986 | None:intergenic | 20.0% |
| !!! | CATTCTATAATTTTACTAAG+TGG | + | 57340:11586-11605 | MS.gene063691:intron | 20.0% |
| !!! | CTATATGACTTTTTTTTTTG+AGG | + | 57340:11824-11843 | MS.gene063691:intron | 20.0% |
| !!! | TTGATTTTTAGTTGCTTATT+GGG | + | 57340:13882-13901 | MS.gene063691:intron | 20.0% |
| !!! | TTTGATTTTTAGTTGCTTAT+TGG | + | 57340:13881-13900 | MS.gene063691:intron | 20.0% |
| ! | AAAAAAAAGAACTTTGCCTA+TGG | + | 57340:14064-14083 | MS.gene063691:intron | 25.0% |
| ! | AAACAAGTCATGTAAAATTG+GGG | + | 57340:12748-12767 | MS.gene063691:intron | 25.0% |
| ! | CAAAAGTAACATCACTATAT+TGG | + | 57340:11972-11991 | MS.gene063691:intron | 25.0% |
| ! | GAAATAAATTAATGCACCAT+GGG | + | 57340:12437-12456 | MS.gene063691:intron | 25.0% |
| ! | GAGTTTACACAAATTACTTA+TGG | + | 57340:11684-11703 | MS.gene063691:intron | 25.0% |
| ! | TAATAAGTCAACATGGAAAA+AGG | - | 57340:14189-14208 | None:intergenic | 25.0% |
| ! | TAATGGTATGATGTCATTAA+TGG | - | 57340:14339-14358 | None:intergenic | 25.0% |
| ! | TGCATATATACATACATACA+TGG | - | 57340:14471-14490 | None:intergenic | 25.0% |
| ! | TTAAAAGAAAAACAACCCAA+AGG | + | 57340:13594-13613 | MS.gene063691:intron | 25.0% |
| ! | TTTGAAAGGTTAACACTATT+AGG | - | 57340:13318-13337 | None:intergenic | 25.0% |
| !! | GTGTTTAAAAAAAGTATGAG+AGG | + | 57340:12170-12189 | MS.gene063691:intron | 25.0% |
| !! | TAATAAACATGTTTTCTACG+TGG | + | 57340:11157-11176 | MS.gene063691:CDS | 25.0% |
| !! | TCATTTATTGATGGATATTG+AGG | - | 57340:14024-14043 | None:intergenic | 25.0% |
| !!! | AAACATTTTGATCCAAATGT+TGG | - | 57340:12880-12899 | None:intergenic | 25.0% |
| !!! | GTTGCATAAACTTGTTTTAT+TGG | + | 57340:11543-11562 | MS.gene063691:intron | 25.0% |
| !!! | TAATTGTTTCTATGCAAAAC+TGG | + | 57340:13050-13069 | MS.gene063691:intron | 25.0% |
| AAAAAAAACCAAGTCTCCTA+CGG | - | 57340:12810-12829 | None:intergenic | 30.0% | |
| AACAACCTGCATCTTAAAAA+GGG | - | 57340:13412-13431 | None:intergenic | 30.0% | |
| AACGTTTGGAAGAAAAGTAA+AGG | - | 57340:11045-11064 | None:intergenic | 30.0% | |
| AATAAAAGTCAAACTTGCAG+TGG | + | 57340:13459-13478 | MS.gene063691:intron | 30.0% | |
| ACGTTTGGAAGAAAAGTAAA+GGG | - | 57340:11044-11063 | None:intergenic | 30.0% | |
| AGATTGAATATGAGTTATGG+TGG | - | 57340:13570-13589 | None:intergenic | 30.0% | |
| AGGAAAATGAATATCTGACT+TGG | - | 57340:14609-14628 | None:intergenic | 30.0% | |
| ATGTTCAATTTCTATCCATG+TGG | - | 57340:14251-14270 | None:intergenic | 30.0% | |
| CATGTTTCAACATATCAATG+GGG | + | 57340:13851-13870 | MS.gene063691:intron | 30.0% | |
| CCATGTTTCAACATATCAAT+GGG | + | 57340:13850-13869 | MS.gene063691:intron | 30.0% | |
| CGACCAAAAAACTGTTTAAT+GGG | + | 57340:13739-13758 | MS.gene063691:intron | 30.0% | |
| GAATATAAACCATTGGATGA+AGG | + | 57340:12850-12869 | MS.gene063691:intron | 30.0% | |
| GACTTGTCAAAATACAATTC+TGG | - | 57340:13157-13176 | None:intergenic | 30.0% | |
| GGAAATAAATTAATGCACCA+TGG | + | 57340:12436-12455 | MS.gene063691:intron | 30.0% | |
| GGATAATCACACTAGAATAA+CGG | + | 57340:12989-13008 | MS.gene063691:intron | 30.0% | |
| GTAAACTAAACACCAATATC+AGG | + | 57340:12667-12686 | MS.gene063691:intron | 30.0% | |
| TAAATAGTAGAAGGGTTGTT+AGG | - | 57340:12600-12619 | None:intergenic | 30.0% | |
| TACGCAACATTGATATATGA+TGG | - | 57340:12024-12043 | None:intergenic | 30.0% | |
| TACGCAAGTTCATTTATTGA+TGG | - | 57340:14033-14052 | None:intergenic | 30.0% | |
| TGCATAATTGCGTGATATAT+AGG | + | 57340:12645-12664 | MS.gene063691:intron | 30.0% | |
| TGTTCAATTTCTATCCATGT+GGG | - | 57340:14250-14269 | None:intergenic | 30.0% | |
| TTATCAATCCAAGACTAATG+TGG | + | 57340:14696-14715 | MS.gene063691:intron | 30.0% | |
| TTTGATGTGAAGTATGATGA+AGG | + | 57340:11305-11324 | MS.gene063691:CDS | 30.0% | |
| ! | AGTTTTACGTGTGAAAAGAA+TGG | + | 57340:11131-11150 | MS.gene063691:CDS | 30.0% |
| ! | ATGAAAAACCACATTAGTCT+TGG | - | 57340:14707-14726 | None:intergenic | 30.0% |
| ! | CTAATGTGGTTTTTCATTTC+AGG | + | 57340:14710-14729 | MS.gene063691:intron | 30.0% |
| ! | GAATGAAAAGTGTACTGAAT+TGG | - | 57340:11934-11953 | None:intergenic | 30.0% |
| ! | GTGAAACTATTTTCCAACAT+TGG | + | 57340:14543-14562 | MS.gene063691:intron | 30.0% |
| ! | TACATACTTGTTACACTTCA+TGG | + | 57340:11659-11678 | MS.gene063691:intron | 30.0% |
| !! | ACATTAGTCTTGGATTGATA+AGG | - | 57340:14697-14716 | None:intergenic | 30.0% |
| !! | CTTTATTTCTTTTTGCCTCT+AGG | + | 57340:14574-14593 | MS.gene063691:intron | 30.0% |
| !!! | CCATTAAACAGTTTTTTGGT+CGG | - | 57340:13741-13760 | None:intergenic | 30.0% |
| !!! | GAACCCATTAAACAGTTTTT+TGG | - | 57340:13745-13764 | None:intergenic | 30.0% |
| AACCTTTCAAAGTATGAACC+AGG | + | 57340:13327-13346 | MS.gene063691:intron | 35.0% | |
| AATTCAAAGATTCACCTCAC+AGG | + | 57340:13180-13199 | MS.gene063691:intron | 35.0% | |
| AGATAAACGAATGAGTTGCA+AGG | + | 57340:13933-13952 | MS.gene063691:intron | 35.0% | |
| AGTTGAAATCAATTGGGTGT+TGG | - | 57340:12914-12933 | None:intergenic | 35.0% | |
| ATGCAGGTTGTTGTAGTTAT+GGG | + | 57340:13420-13439 | MS.gene063691:intron | 35.0% | |
| CAACAAATATCCACTGCTTT+AGG | - | 57340:12486-12505 | None:intergenic | 35.0% | |
| CAACAACCTGCATCTTAAAA+AGG | - | 57340:13413-13432 | None:intergenic | 35.0% | |
| CAACATATCAATGGGGATTT+GGG | + | 57340:13858-13877 | MS.gene063691:intron | 35.0% | |
| CATATTGACCTCAATGGATA+GGG | + | 57340:12402-12421 | MS.gene063691:intron | 35.0% | |
| CATTAAATCCTGGCCATTAA+TGG | - | 57340:14415-14434 | None:intergenic | 35.0% | |
| CATTAATGGCCAGGATTTAA+TGG | + | 57340:14413-14432 | MS.gene063691:intron | 35.0% | |
| CCCATTGATATGTTGAAACA+TGG | - | 57340:13853-13872 | None:intergenic | 35.0% | |
| CCGACCAAAAAACTGTTTAA+TGG | + | 57340:13738-13757 | MS.gene063691:intron | 35.0% | |
| CTGAGAAGAATCATTCTGAT+TGG | - | 57340:11387-11406 | None:intergenic | 35.0% | |
| CTGGTTAATTATATCCTGTG+AGG | - | 57340:13197-13216 | None:intergenic | 35.0% | |
| GACATCATACCATTAGATCT+GGG | + | 57340:14344-14363 | MS.gene063691:intron | 35.0% | |
| GATATGTTGAAACATGGCAA+AGG | - | 57340:13847-13866 | None:intergenic | 35.0% | |
| GATGAAGGTTAACCAACATT+TGG | + | 57340:12865-12884 | MS.gene063691:intron | 35.0% | |
| GCCATGTTTCAACATATCAA+TGG | + | 57340:13849-13868 | MS.gene063691:intron | 35.0% | |
| GGATTTGTGAATGTAGCAAT+TGG | - | 57340:13136-13155 | None:intergenic | 35.0% | |
| GTTCAATTTCTATCCATGTG+GGG | - | 57340:14249-14268 | None:intergenic | 35.0% | |
| TCAACATATCAATGGGGATT+TGG | + | 57340:13857-13876 | MS.gene063691:intron | 35.0% | |
| TCATATTGACCTCAATGGAT+AGG | + | 57340:12401-12420 | MS.gene063691:intron | 35.0% | |
| TCTGTTCATATTGACCTCAA+TGG | + | 57340:12396-12415 | MS.gene063691:intron | 35.0% | |
| TGAACATAACATACGGTTGT+TGG | + | 57340:14264-14283 | MS.gene063691:intron | 35.0% | |
| TGACATCATACCATTAGATC+TGG | + | 57340:14343-14362 | MS.gene063691:intron | 35.0% | |
| TGGTGCATAATAAGAAACCA+TGG | + | 57340:13996-14015 | MS.gene063691:intron | 35.0% | |
| TGTAAGTACGACATTGTGAT+AGG | - | 57340:14629-14648 | None:intergenic | 35.0% | |
| TGTTCAAGTGCAAGTTTCTA+TGG | + | 57340:11238-11257 | MS.gene063691:CDS | 35.0% | |
| TTCACCAACACTTCTTTGAA+TGG | + | 57340:11014-11033 | MS.gene063691:CDS | 35.0% | |
| TTCAGCTCAGTGAATCAATA+TGG | + | 57340:13252-13271 | MS.gene063691:intron | 35.0% | |
| TTGAATATGAGTTATGGTGG+TGG | - | 57340:13567-13586 | None:intergenic | 35.0% | |
| ! | ACTTCCATTCAAAGAAGTGT+TGG | - | 57340:11021-11040 | None:intergenic | 35.0% |
| ! | AGTTTTGCCGATGAAGTTTT+CGG | + | 57340:13656-13675 | MS.gene063691:intron | 35.0% |
| ! | CTTATTGGGTTGTTAGATCT+GGG | + | 57340:13896-13915 | MS.gene063691:intron | 35.0% |
| ! | TGTGCTAGTGTCCAATTTTA+CGG | - | 57340:14126-14145 | None:intergenic | 35.0% |
| ! | TTTTCATGGTAGAAGCTGTT+TGG | - | 57340:10953-10972 | None:intergenic | 35.0% |
| ! | TTTTCCAAGTTTGACACCAA+AGG | - | 57340:13627-13646 | None:intergenic | 35.0% |
| !! | AAAAAGCAAAGTGTTGAAGC+TGG | + | 57340:14739-14758 | MS.gene063691:CDS | 35.0% |
| !! | AAAACCTTTGGTGTCAAACT+TGG | + | 57340:13620-13639 | MS.gene063691:intron | 35.0% |
| !! | AGTTCTGAAGGTTTGAGAAT+TGG | - | 57340:11208-11227 | None:intergenic | 35.0% |
| !! | GTAGCAATTGGTTTCGATTT+TGG | - | 57340:13124-13143 | None:intergenic | 35.0% |
| !!! | ACCAAAGGTTTTGTTCCTTT+GGG | - | 57340:13612-13631 | None:intergenic | 35.0% |
| !!! | CAGTTTTCTTGTTATTGTCC+TGG | + | 57340:11404-11423 | MS.gene063691:CDS | 35.0% |
| !!! | TTTTCTTGTTATTGTCCTGG+TGG | + | 57340:11407-11426 | MS.gene063691:CDS | 35.0% |
| AAAAGTCAAACTTGCAGTGG+TGG | + | 57340:13462-13481 | MS.gene063691:intron | 40.0% | |
| AATGAGTTGCAAGGAGAGAA+AGG | + | 57340:13942-13961 | MS.gene063691:intron | 40.0% | |
| AATGTGTGACCCAGATCTAA+TGG | - | 57340:14356-14375 | None:intergenic | 40.0% | |
| ACAGTGAGATTCTGAACGTT+TGG | - | 57340:11059-11078 | None:intergenic | 40.0% | |
| ACCCAAAGGAACAAAACCTT+TGG | + | 57340:13608-13627 | MS.gene063691:intron | 40.0% | |
| AGCTTAAACCCTATCCATTG+AGG | - | 57340:12413-12432 | None:intergenic | 40.0% | |
| ATAGTAGAAGGGTTGTTAGG+TGG | - | 57340:12597-12616 | None:intergenic | 40.0% | |
| ATGAGTTGCAAGGAGAGAAA+GGG | + | 57340:13943-13962 | MS.gene063691:intron | 40.0% | |
| ATGGATAGGGTTTAAGCTCA+AGG | + | 57340:12415-12434 | MS.gene063691:intron | 40.0% | |
| CAAATGCTCAAACAAATGCC+TGG | - | 57340:13348-13367 | None:intergenic | 40.0% | |
| CAAGTGCAAGTTTCTATGGA+TGG | + | 57340:11242-11261 | MS.gene063691:CDS | 40.0% | |
| CAGAAGAGCTTGCATTTGTT+AGG | - | 57340:12243-12262 | None:intergenic | 40.0% | |
| CGGTGGCTAGAAAAATTAAG+TGG | + | 57340:13676-13695 | MS.gene063691:intron | 40.0% | |
| CTAACAAATGCAAGCTCTTC+TGG | + | 57340:12241-12260 | MS.gene063691:intron | 40.0% | |
| GACTATATGACCTAAAGCAG+TGG | + | 57340:12473-12492 | MS.gene063691:intron | 40.0% | |
| GAGAGAAAGGGATAGTCAAT+TGG | + | 57340:13955-13974 | MS.gene063691:intron | 40.0% | |
| GATGAGTAACATGCACTAGT+AGG | + | 57340:13783-13802 | MS.gene063691:intron | 40.0% | |
| GATGCAGGTTGTTGTAGTTA+TGG | + | 57340:13419-13438 | MS.gene063691:intron | 40.0% | |
| GGAGAAAGTTCAAGTGTGTA+TGG | + | 57340:13976-13995 | MS.gene063691:intron | 40.0% | |
| GGCATTTGTTTGAGCATTTG+AGG | + | 57340:13348-13367 | MS.gene063691:intron | 40.0% | |
| GTTGGTTAACCTTCATCCAA+TGG | - | 57340:12862-12881 | None:intergenic | 40.0% | |
| TAAAGTGAGTGTGCCAATGT+TGG | - | 57340:14559-14578 | None:intergenic | 40.0% | |
| TAATCAGAGTCCATGGAAGA+TGG | - | 57340:13708-13727 | None:intergenic | 40.0% | |
| TAGGTGAATTGAGAAGAGAG+TGG | + | 57340:13802-13821 | MS.gene063691:intron | 40.0% | |
| TCCACATGTGGGAAATACTT+TGG | + | 57340:14311-14330 | MS.gene063691:intron | 40.0% | |
| TCTCAAACCTTCAGAACTGT+GGG | + | 57340:11210-11229 | MS.gene063691:CDS | 40.0% | |
| TCTTCCATGGACTCTGATTA+TGG | + | 57340:13708-13727 | MS.gene063691:intron | 40.0% | |
| TGCCTGGTTCATACTTTGAA+AGG | - | 57340:13332-13351 | None:intergenic | 40.0% | |
| TGTATGTGATGTGTGTGTGT+GGG | + | 57340:14387-14406 | MS.gene063691:intron | 40.0% | |
| TTCTCAAACCTTCAGAACTG+TGG | + | 57340:11209-11228 | MS.gene063691:CDS | 40.0% | |
| ! | AAATGCAAGCTCTTCTGGTT+CGG | + | 57340:12246-12265 | MS.gene063691:intron | 40.0% |
| ! | ACCAAAGTATTTCCCACATG+TGG | - | 57340:14315-14334 | None:intergenic | 40.0% |
| ! | GCTTATTGGGTTGTTAGATC+TGG | + | 57340:13895-13914 | MS.gene063691:intron | 40.0% |
| ! | GTGGAATTTTCCATCTTCCA+TGG | + | 57340:13695-13714 | MS.gene063691:intron | 40.0% |
| ! | TGAAGTATGATGAAGGTGCA+GGG | + | 57340:11312-11331 | MS.gene063691:CDS | 40.0% |
| !! | TGAAATCAATTGGGTGTTGG+AGG | - | 57340:12911-12930 | None:intergenic | 40.0% |
| !!! | CACCAAAGGTTTTGTTCCTT+TGG | - | 57340:13613-13632 | None:intergenic | 40.0% |
| AAAACCAAGTCTCCTACGGT+AGG | - | 57340:12806-12825 | None:intergenic | 45.0% | |
| AATTTAGTAGCAGCCCCACA+TGG | + | 57340:14233-14252 | MS.gene063691:intron | 45.0% | |
| ACATACATGGAGCAGCACTT+GGG | - | 57340:14458-14477 | None:intergenic | 45.0% | |
| CTAGCCACCGAAAACTTCAT+CGG | - | 57340:13666-13685 | None:intergenic | 45.0% | |
| CTCAAACCTTCAGAACTGTG+GGG | + | 57340:11211-11230 | MS.gene063691:CDS | 45.0% | |
| CTCAGAGTGTGAAGTGTGTA+GGG | + | 57340:11340-11359 | MS.gene063691:CDS | 45.0% | |
| CTTCATCGGCAAAACTGTGT+CGG | - | 57340:13652-13671 | None:intergenic | 45.0% | |
| GATCCCTCTTTCTCTCTCTT+CGG | + | 57340:12958-12977 | MS.gene063691:intron | 45.0% | |
| GATGGTACTGTTTCAGAGAG+TGG | + | 57340:11260-11279 | MS.gene063691:CDS | 45.0% | |
| GTGAATTGAGAAGAGAGTGG+TGG | + | 57340:13805-13824 | MS.gene063691:intron | 45.0% | |
| GTGTATGTGATGTGTGTGTG+TGG | + | 57340:14386-14405 | MS.gene063691:intron | 45.0% | |
| TAAAATTGGGGCTCCGTCTA+CGG | + | 57340:12760-12779 | MS.gene063691:intron | 45.0% | |
| TAATGGCACGCTGCCATTAA+TGG | + | 57340:14430-14449 | MS.gene063691:intron | 45.0% | |
| TACATACATGGAGCAGCACT+TGG | - | 57340:14459-14478 | None:intergenic | 45.0% | |
| TCTCTCTCTTCGGTGGATAT+CGG | + | 57340:12968-12987 | MS.gene063691:intron | 45.0% | |
| TGGTGCAGGTTTGTCATTCA+GGG | - | 57340:13529-13548 | None:intergenic | 45.0% | |
| TGTGAAGTGTGTAGGGAATC+TGG | + | 57340:11347-11366 | MS.gene063691:CDS | 45.0% | |
| TGTTTCAGAGAGTGGAGTTG+AGG | + | 57340:11268-11287 | MS.gene063691:CDS | 45.0% | |
| ! | ACTTGGCATCTAGAACCTAG+AGG | - | 57340:14592-14611 | None:intergenic | 45.0% |
| ! | CGGTTGTTGGTTGCCATTAA+TGG | + | 57340:14277-14296 | MS.gene063691:intron | 45.0% |
| ! | GAAGAGAGTGGTGGTGATTT+CGG | + | 57340:13814-13833 | MS.gene063691:intron | 45.0% |
| ! | GTGAAGTATGATGAAGGTGC+AGG | + | 57340:11311-11330 | MS.gene063691:CDS | 45.0% |
| ! | TGATGGATATTGAGGCTCCA+TGG | - | 57340:14016-14035 | None:intergenic | 45.0% |
| ! | TTTGCCGATGAAGTTTTCGG+TGG | + | 57340:13659-13678 | MS.gene063691:intron | 45.0% |
| !! | AATGCAAGCTCTTCTGGTTC+GGG | + | 57340:12247-12266 | MS.gene063691:intron | 45.0% |
| !!! | GCTCTCCCTTTTTAAGATGC+AGG | + | 57340:13404-13423 | MS.gene063691:intron | 45.0% |
| AGGGAATCTGGAGGAACATG+TGG | + | 57340:11359-11378 | MS.gene063691:CDS | 50.0% | |
| CCACCGAAGAGAGAGAAAGA+GGG | - | 57340:12964-12983 | None:intergenic | 50.0% | |
| CCTACACACTTCACACTCTG+AGG | - | 57340:11342-11361 | None:intergenic | 50.0% | |
| CCTCAGAGTGTGAAGTGTGT+AGG | + | 57340:11339-11358 | MS.gene063691:CDS | 50.0% | |
| CGACCTATCACACTTGCCTA+CGG | + | 57340:14091-14110 | MS.gene063691:intron | 50.0% | |
| CTACGGTAGGTGACCTATTC+AGG | - | 57340:12793-12812 | None:intergenic | 50.0% | |
| CTGAATAGGTCACCTACCGT+AGG | + | 57340:12791-12810 | MS.gene063691:intron | 50.0% | |
| GAAGTGTGTAGGGAATCTGG+AGG | + | 57340:11350-11369 | MS.gene063691:CDS | 50.0% | |
| GACCTATCACACTTGCCTAC+GGG | + | 57340:14092-14111 | MS.gene063691:intron | 50.0% | |
| GACGCCATAATCAGAGTCCA+TGG | - | 57340:13715-13734 | None:intergenic | 50.0% | |
| GAGAGAGAAAGAGGGATCAG+TGG | - | 57340:12956-12975 | None:intergenic | 50.0% | |
| GCAGGTTTGTCATTCAGGGA+GGG | - | 57340:13525-13544 | None:intergenic | 50.0% | |
| GGAGTTGAGGTAGTGCAAGA+AGG | + | 57340:11281-11300 | MS.gene063691:CDS | 50.0% | |
| GGGCTGCTACTAAATTACGC+AGG | - | 57340:14229-14248 | None:intergenic | 50.0% | |
| GTGGTGCAGGTTTGTCATTC+AGG | - | 57340:13530-13549 | None:intergenic | 50.0% | |
| TCCACCGAAGAGAGAGAAAG+AGG | - | 57340:12965-12984 | None:intergenic | 50.0% | |
| TGCAGGTTTGTCATTCAGGG+AGG | - | 57340:13526-13545 | None:intergenic | 50.0% | |
| TGTGATAGGTCGCGTACCAT+AGG | - | 57340:14083-14102 | None:intergenic | 50.0% | |
| ! | AGTATGATGAAGGTGCAGGG+TGG | + | 57340:11315-11334 | MS.gene063691:CDS | 50.0% |
| ! | TTCCCACATGTGGAGCACTT+GGG | - | 57340:14305-14324 | None:intergenic | 50.0% |
| ! | TTTCCCACATGTGGAGCACT+TGG | - | 57340:14306-14325 | None:intergenic | 50.0% |
| !! | ATGAGTTATGGTGGTGGCCA+TGG | - | 57340:13561-13580 | None:intergenic | 50.0% |
| !! | CAGCACTTGGGTGCCATTAA+TGG | - | 57340:14446-14465 | None:intergenic | 50.0% |
| !! | GAGCACTTGGGTGCCATTAA+TGG | - | 57340:14293-14312 | None:intergenic | 50.0% |
| !! | GTGTGTGTGGGTGCCATTAA+TGG | + | 57340:14399-14418 | MS.gene063691:intron | 50.0% |
| AGAAAGAGGGATCAGTGGCG+TGG | - | 57340:12951-12970 | None:intergenic | 55.0% | |
| CACCCAAGTGCTCCACATGT+GGG | + | 57340:14300-14319 | MS.gene063691:intron | 55.0% | |
| CCCTCTTTCTCTCTCTTCGG+TGG | + | 57340:12961-12980 | MS.gene063691:intron | 55.0% | |
| CTACGGTGGGAGACCTGAAT+AGG | + | 57340:12777-12796 | MS.gene063691:intron | 55.0% | |
| CTCCCGTAGGCAAGTGTGAT+AGG | - | 57340:14097-14116 | None:intergenic | 55.0% | |
| GTCACCTACCGTAGGAGACT+TGG | + | 57340:12799-12818 | MS.gene063691:intron | 55.0% | |
| GTCCTGTCTCATGACACCCA+TGG | - | 57340:12456-12475 | None:intergenic | 55.0% | |
| TCACACTTGCCTACGGGAGA+CGG | + | 57340:14098-14117 | MS.gene063691:intron | 55.0% | |
| TTCAGGTCTCCCACCGTAGA+CGG | - | 57340:12776-12795 | None:intergenic | 55.0% | |
| ! | CACCATGGGTGTCATGAGAC+AGG | + | 57340:12451-12470 | MS.gene063691:intron | 55.0% |
| ! | CACTAGCCCCACAGTTCTGA+AGG | - | 57340:11220-11239 | None:intergenic | 55.0% |
| ! | GGCAGCGTGCCATTAAATCC+TGG | - | 57340:14425-14444 | None:intergenic | 55.0% |
| !! | AGTTATGGTGGTGGCCATGG+CGG | - | 57340:13558-13577 | None:intergenic | 55.0% |
| !! | GCAGCATGAGTTGATCCACC+AGG | - | 57340:11425-11444 | None:intergenic | 55.0% |
| !! | TGTGGGTGCCATTAATGGCC+AGG | + | 57340:14404-14423 | MS.gene063691:intron | 55.0% |
| AATTGGGGCTCCGTCTACGG+TGG | + | 57340:12763-12782 | MS.gene063691:intron | 60.0% | |
| ACACTTGCCTACGGGAGACG+GGG | + | 57340:14100-14119 | MS.gene063691:intron | 60.0% | |
| ATTGGGGCTCCGTCTACGGT+GGG | + | 57340:12764-12783 | MS.gene063691:intron | 60.0% | |
| CACACTTGCCTACGGGAGAC+GGG | + | 57340:14099-14118 | MS.gene063691:intron | 60.0% | |
| GCACCCAAGTGCTCCACATG+TGG | + | 57340:14299-14318 | MS.gene063691:intron | 60.0% | |
| GGGAGACGGGGCCGTAAAAT+TGG | + | 57340:14112-14131 | MS.gene063691:intron | 60.0% | |
| TTTACGGCCCCGTCTCCCGT+AGG | - | 57340:14110-14129 | None:intergenic | 65.0% | |
| CTGCACCACCGTCACCGCCA+TGG | + | 57340:13541-13560 | MS.gene063691:intron | 70.0% | |
| ! | CATGGCGGTGACGGTGGTGC+AGG | - | 57340:13543-13562 | None:intergenic | 70.0% |
| ! | GGTGGTGGCCATGGCGGTGA+CGG | - | 57340:13552-13571 | None:intergenic | 70.0% |
| ! | GGTGGCCATGGCGGTGACGG+TGG | - | 57340:13549-13568 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57340 | gene | 10945 | 14767 | 10945 | ID=MS.gene063691 |
| 57340 | mRNA | 10945 | 14767 | 10945 | ID=MS.gene063691.t1;Parent=MS.gene063691 |
| 57340 | exon | 10945 | 11464 | 10945 | ID=MS.gene063691.t1.exon1;Parent=MS.gene063691.t1 |
| 57340 | CDS | 10945 | 11464 | 10945 | ID=cds.MS.gene063691.t1;Parent=MS.gene063691.t1 |
| 57340 | exon | 14732 | 14767 | 14732 | ID=MS.gene063691.t1.exon2;Parent=MS.gene063691.t1 |
| 57340 | CDS | 14732 | 14767 | 14732 | ID=cds.MS.gene063691.t1;Parent=MS.gene063691.t1 |
| Gene Sequence |
| Protein sequence |
