Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065562.t1 | XP_003595978.3 | 95.4 | 370 | 6 | 1 | 1 | 359 | 49 | 418 | 2.30E-200 | 708 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065562.t1 | Q888A4 | 33.3 | 348 | 199 | 11 | 8 | 351 | 5 | 323 | 4.7e-37 | 156.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065562.t1 | A0A396JHS8 | 95.4 | 370 | 6 | 1 | 1 | 359 | 49 | 418 | 1.6e-200 | 708.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049351 | MS.gene065562 | 0.832508 | 9.08E-56 | -1.69E-46 |
MS.gene049356 | MS.gene065562 | 0.808516 | 2.98E-50 | -1.69E-46 |
MS.gene049758 | MS.gene065562 | 0.841873 | 3.65E-58 | -1.69E-46 |
MS.gene050128 | MS.gene065562 | 0.815551 | 8.72E-52 | -1.69E-46 |
MS.gene050301 | MS.gene065562 | 0.819825 | 9.48E-53 | -1.69E-46 |
MS.gene050397 | MS.gene065562 | 0.836212 | 1.07E-56 | -1.69E-46 |
MS.gene050464 | MS.gene065562 | 0.80721 | 5.65E-50 | -1.69E-46 |
MS.gene050670 | MS.gene065562 | 0.819535 | 1.10E-52 | -1.69E-46 |
MS.gene050971 | MS.gene065562 | 0.833591 | 4.88E-56 | -1.69E-46 |
MS.gene051860 | MS.gene065562 | 0.818686 | 1.72E-52 | -1.69E-46 |
MS.gene052011 | MS.gene065562 | -0.80123 | 9.93E-49 | -1.69E-46 |
MS.gene052077 | MS.gene065562 | 0.80506 | 1.60E-49 | -1.69E-46 |
MS.gene052078 | MS.gene065562 | 0.802982 | 4.33E-49 | -1.69E-46 |
MS.gene052188 | MS.gene065562 | 0.832059 | 1.17E-55 | -1.69E-46 |
MS.gene052253 | MS.gene065562 | 0.81195 | 5.42E-51 | -1.69E-46 |
MS.gene052340 | MS.gene065562 | 0.8098 | 1.58E-50 | -1.69E-46 |
MS.gene053209 | MS.gene065562 | 0.813808 | 2.12E-51 | -1.69E-46 |
MS.gene053836 | MS.gene065562 | 0.827822 | 1.27E-54 | -1.69E-46 |
MS.gene053928 | MS.gene065562 | 0.820475 | 6.72E-53 | -1.69E-46 |
MS.gene054011 | MS.gene065562 | 0.803918 | 2.77E-49 | -1.69E-46 |
MS.gene054123 | MS.gene065562 | 0.812819 | 3.50E-51 | -1.69E-46 |
MS.gene055116 | MS.gene065562 | 0.823429 | 1.39E-53 | -1.69E-46 |
MS.gene055277 | MS.gene065562 | 0.830764 | 2.44E-55 | -1.69E-46 |
MS.gene055422 | MS.gene065562 | 0.822554 | 2.23E-53 | -1.69E-46 |
MS.gene055604 | MS.gene065562 | 0.836728 | 7.89E-57 | -1.69E-46 |
MS.gene056191 | MS.gene065562 | 0.801997 | 6.92E-49 | -1.69E-46 |
MS.gene056407 | MS.gene065562 | 0.832209 | 1.08E-55 | -1.69E-46 |
MS.gene056410 | MS.gene065562 | 0.804609 | 1.99E-49 | -1.69E-46 |
MS.gene056612 | MS.gene065562 | 0.831654 | 1.48E-55 | -1.69E-46 |
MS.gene056659 | MS.gene065562 | 0.812505 | 4.10E-51 | -1.69E-46 |
MS.gene056902 | MS.gene065562 | 0.820775 | 5.74E-53 | -1.69E-46 |
MS.gene057396 | MS.gene065562 | 0.815168 | 1.06E-51 | -1.69E-46 |
MS.gene057448 | MS.gene065562 | 0.823487 | 1.35E-53 | -1.69E-46 |
MS.gene057449 | MS.gene065562 | 0.815788 | 7.73E-52 | -1.69E-46 |
MS.gene057450 | MS.gene065562 | 0.823641 | 1.24E-53 | -1.69E-46 |
MS.gene058002 | MS.gene065562 | 0.824896 | 6.29E-54 | -1.69E-46 |
MS.gene05811 | MS.gene065562 | 0.834474 | 2.94E-56 | -1.69E-46 |
MS.gene058660 | MS.gene065562 | 0.806313 | 8.74E-50 | -1.69E-46 |
MS.gene058949 | MS.gene065562 | 0.815412 | 9.37E-52 | -1.69E-46 |
MS.gene05907 | MS.gene065562 | 0.837826 | 4.13E-57 | -1.69E-46 |
MS.gene059294 | MS.gene065562 | 0.817869 | 2.64E-52 | -1.69E-46 |
MS.gene059366 | MS.gene065562 | 0.800067 | 1.71E-48 | -1.69E-46 |
MS.gene059420 | MS.gene065562 | 0.820923 | 5.31E-53 | -1.69E-46 |
MS.gene059676 | MS.gene065562 | 0.808412 | 3.14E-50 | -1.69E-46 |
MS.gene059688 | MS.gene065562 | 0.81084 | 9.44E-51 | -1.69E-46 |
MS.gene059692 | MS.gene065562 | 0.806602 | 7.60E-50 | -1.69E-46 |
MS.gene059695 | MS.gene065562 | 0.800579 | 1.35E-48 | -1.69E-46 |
MS.gene05984 | MS.gene065562 | 0.814582 | 1.43E-51 | -1.69E-46 |
MS.gene06037 | MS.gene065562 | 0.85198 | 6.23E-61 | -1.69E-46 |
MS.gene061049 | MS.gene065562 | 0.826802 | 2.22E-54 | -1.69E-46 |
MS.gene061051 | MS.gene065562 | -0.811076 | 8.39E-51 | -1.69E-46 |
MS.gene061154 | MS.gene065562 | 0.84854 | 5.74E-60 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065562.t1 | MTR_2g064620 | 94.678 | 357 | 8 | 1 | 14 | 359 | 3 | 359 | 0.0 | 689 |
MS.gene065562.t1 | MTR_7g115310 | 25.201 | 373 | 237 | 11 | 8 | 357 | 468 | 821 | 3.91e-20 | 92.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065562.t1 | AT1G56000 | 65.854 | 369 | 114 | 2 | 2 | 359 | 17 | 384 | 1.72e-176 | 495 |
MS.gene065562.t1 | AT1G56000 | 64.087 | 323 | 104 | 2 | 48 | 359 | 8 | 329 | 4.58e-148 | 421 |
MS.gene065562.t1 | AT1G55980 | 63.462 | 312 | 103 | 1 | 2 | 302 | 17 | 328 | 2.97e-143 | 409 |
MS.gene065562.t1 | AT1G55980 | 63.666 | 311 | 102 | 1 | 3 | 302 | 158 | 468 | 9.09e-142 | 410 |
MS.gene065562.t1 | AT1G55980 | 60.902 | 266 | 93 | 1 | 48 | 302 | 8 | 273 | 1.01e-114 | 334 |
MS.gene065562.t1 | AT3G04650 | 28.732 | 355 | 218 | 11 | 8 | 346 | 95 | 430 | 2.61e-32 | 126 |
Find 85 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATGACTTCCACTGTCTTTA+AGG | 0.054220 | 2.2:+22257682 | None:intergenic |
GCTCTATGTTGTCAAATTTA+AGG | 0.055083 | 2.2:-22258896 | None:intergenic |
GTGGATTGGCAGCAGCTTTA+AGG | 0.178617 | 2.2:+22264613 | MS.gene065562:CDS |
CAAAATCTTGGTCAGTTTAA+AGG | 0.201127 | 2.2:+22260051 | MS.gene065562:CDS |
AATAGGAAAAGAACCTTCTT+TGG | 0.229970 | 2.2:-22257933 | None:intergenic |
TATGTTCAGTTTCCAGTTAA+AGG | 0.238069 | 2.2:+22262211 | MS.gene065562:intron |
CAAGATTGACTAACCATCTA+TGG | 0.238742 | 2.2:-22262563 | None:intergenic |
CTCTATGTTGTCAAATTTAA+GGG | 0.276798 | 2.2:-22258895 | None:intergenic |
AAGAGATTTGTGGGTGTTCC+AGG | 0.300128 | 2.2:+22259815 | MS.gene065562:CDS |
GTCTTTAAGGTTGCTGTGTT+GGG | 0.311565 | 2.2:+22257695 | MS.gene065562:CDS |
AGCAAGTTTGGTGTGGGTAT+TGG | 0.312552 | 2.2:+22259973 | MS.gene065562:CDS |
TGCTGCCAATCCACTATCTA+TGG | 0.346820 | 2.2:-22264604 | None:intergenic |
AAAATTCTAAAGTTCTAAGT+TGG | 0.347059 | 2.2:+22262245 | MS.gene065562:CDS |
TTAGGTGTGGAAAGCAAGTT+TGG | 0.352186 | 2.2:+22259961 | MS.gene065562:intron |
ACCGCGAAACATGGCCTAAC+AGG | 0.355118 | 2.2:-22261118 | None:intergenic |
TGAATGGAGAAACCTTTAAC+TGG | 0.370484 | 2.2:-22262223 | None:intergenic |
TGAACTAGACGAGCCACTTC+AGG | 0.384189 | 2.2:-22258807 | None:intergenic |
TGTCTTTAAGGTTGCTGTGT+TGG | 0.412707 | 2.2:+22257694 | MS.gene065562:CDS |
TTTCAAGAATTTCAAAGGAC+AGG | 0.414179 | 2.2:+22262507 | MS.gene065562:CDS |
ATAGGAAAAGAACCTTCTTT+GGG | 0.416059 | 2.2:-22257932 | None:intergenic |
GCCATGTTTCGCGGTTATGA+TGG | 0.421407 | 2.2:+22261126 | MS.gene065562:CDS |
ATACTTCAACTATAAACAAC+TGG | 0.425588 | 2.2:-22264652 | None:intergenic |
CTTTGGGACATGCGTCCACC+AGG | 0.427017 | 2.2:-22257916 | None:intergenic |
TCCTGTTAGGCCATGTTTCG+CGG | 0.445213 | 2.2:+22261117 | MS.gene065562:CDS |
AACACAGAAGTCACCACATA+TGG | 0.448101 | 2.2:-22264562 | None:intergenic |
TTTGAGTCTGCTAGAGGCCC+TGG | 0.449558 | 2.2:+22257898 | MS.gene065562:CDS |
TGTGTTAGTCCGAATGTTGA+AGG | 0.454251 | 2.2:+22264579 | MS.gene065562:CDS |
AAATTCTAAAGTTCTAAGTT+GGG | 0.454731 | 2.2:+22262246 | MS.gene065562:CDS |
GCTGAATGGAGAGAAAAGTT+TGG | 0.455493 | 2.2:+22258855 | MS.gene065562:CDS |
GAGAAATTGTGGTCATTGAT+AGG | 0.459014 | 2.2:+22260018 | MS.gene065562:CDS |
GGAAGAGTTGAATGGTTAGA+TGG | 0.465164 | 2.2:+22259994 | MS.gene065562:CDS |
GGACTAAGCAAGAGATTTGT+GGG | 0.467979 | 2.2:+22259806 | MS.gene065562:CDS |
GTTGAAGGTGCCATAGATAG+TGG | 0.474892 | 2.2:+22264594 | MS.gene065562:CDS |
GCATCAACTCTTGCTAGAAA+TGG | 0.485520 | 2.2:+22257859 | MS.gene065562:CDS |
AAGGTTGCTGTGTTGGGTGG+TGG | 0.487031 | 2.2:+22257701 | MS.gene065562:CDS |
ATAAGAACATAGTTTCTACT+AGG | 0.492921 | 2.2:+22260088 | MS.gene065562:CDS |
GGCTCGTCTAGTTCAAGAAT+GGG | 0.493742 | 2.2:+22258815 | MS.gene065562:CDS |
TTATTCAATGTAACGTCTGA+GGG | 0.498342 | 2.2:-22262468 | None:intergenic |
TAAATTTGACAACATAGAGC+AGG | 0.504476 | 2.2:+22258899 | MS.gene065562:CDS |
TTGCATATAGAATTCATGCC+TGG | 0.504523 | 2.2:-22259833 | None:intergenic |
CGAGGGGTCTCCTAGCTGAA+TGG | 0.506106 | 2.2:+22258841 | MS.gene065562:CDS |
TACTGTGATAGCAGGAAGCC+AGG | 0.508981 | 2.2:+22262271 | MS.gene065562:CDS |
CTCGGTTAGCAAGCCTGAAG+TGG | 0.510458 | 2.2:+22258794 | MS.gene065562:CDS |
AGGACTAAGCAAGAGATTTG+TGG | 0.517881 | 2.2:+22259805 | MS.gene065562:CDS |
TGGCTCGTCTAGTTCAAGAA+TGG | 0.519455 | 2.2:+22258814 | MS.gene065562:CDS |
AGACGTTACATTGAATAAAG+TGG | 0.521551 | 2.2:+22262473 | MS.gene065562:CDS |
TCTTGGGCAATGCTAGCAGC+TGG | 0.522353 | 2.2:-22264504 | None:intergenic |
GGTGTGGATGGACAAAATCT+TGG | 0.523630 | 2.2:+22260039 | MS.gene065562:CDS |
TCTATGGCACCTTCAACATT+CGG | 0.526743 | 2.2:-22264588 | None:intergenic |
TTCAAGAATTTCAAAGGACA+GGG | 0.535247 | 2.2:+22262508 | MS.gene065562:CDS |
TCTAGAGAGAAAACTGAAGA+TGG | 0.535566 | 2.2:+22258735 | MS.gene065562:intron |
AGCTGCTAGCATTGCCCAAG+AGG | 0.542908 | 2.2:+22264506 | MS.gene065562:CDS |
GGTTAGATGGTGAGAAATTG+TGG | 0.552649 | 2.2:+22260007 | MS.gene065562:CDS |
AGCTGCACAATCTTCCTGTT+AGG | 0.554777 | 2.2:+22261104 | MS.gene065562:CDS |
AGCCAGGCCGTTCTACTACA+AGG | 0.555450 | 2.2:+22262287 | MS.gene065562:CDS |
TTTATTCAATGTAACGTCTG+AGG | 0.561529 | 2.2:-22262469 | None:intergenic |
GCCATCATAACCGCGAAACA+TGG | 0.563610 | 2.2:-22261127 | None:intergenic |
AGAGAAAACTGAAGATGGCA+AGG | 0.564821 | 2.2:+22258740 | MS.gene065562:CDS |
ACACTCTTTGAGTCTGCTAG+AGG | 0.565822 | 2.2:+22257892 | MS.gene065562:CDS |
ACAGGACGGCTGCCACCACT+TGG | 0.572673 | 2.2:+22260123 | MS.gene065562:CDS |
AAGATTGACTAACCATCTAT+GGG | 0.576813 | 2.2:-22262562 | None:intergenic |
ACTAGGATTGCAGATGTCAC+AGG | 0.578838 | 2.2:+22260105 | MS.gene065562:CDS |
GTTGGGCTTACTGTGATAGC+AGG | 0.579207 | 2.2:+22262263 | MS.gene065562:CDS |
TGGGTATTGGAAGAGTTGAA+TGG | 0.580213 | 2.2:+22259986 | MS.gene065562:CDS |
AGTTCAAGAATGGGAGTCGA+GGG | 0.586947 | 2.2:+22258824 | MS.gene065562:CDS |
ATGAATACCTTGTAGTAGAA+CGG | 0.588295 | 2.2:-22262294 | None:intergenic |
GTGGACGCATGTCCCAAAGA+AGG | 0.590847 | 2.2:+22257920 | MS.gene065562:CDS |
AACAAGAGACTAGCCATATG+TGG | 0.592914 | 2.2:+22264549 | MS.gene065562:CDS |
TTTAAGGTTGCTGTGTTGGG+TGG | 0.593128 | 2.2:+22257698 | MS.gene065562:CDS |
TACCTTGTAGTAGAACGGCC+TGG | 0.593327 | 2.2:-22262289 | None:intergenic |
TGTGGAAAGCAAGTTTGGTG+TGG | 0.614933 | 2.2:+22259966 | MS.gene065562:CDS |
TAGTTCAAGAATGGGAGTCG+AGG | 0.616885 | 2.2:+22258823 | MS.gene065562:CDS |
TGGTCATTGATAGGTGTGGA+TGG | 0.617485 | 2.2:+22260027 | MS.gene065562:CDS |
GTGGAAAGCAAGTTTGGTGT+GGG | 0.619348 | 2.2:+22259967 | MS.gene065562:CDS |
AAGGAGCTGCATTTCGACCA+CGG | 0.625576 | 2.2:+22258759 | MS.gene065562:CDS |
AGGTGCCATAGATAGTGGAT+TGG | 0.636479 | 2.2:+22264599 | MS.gene065562:CDS |
TTTGGGACATGCGTCCACCA+GGG | 0.639991 | 2.2:-22257915 | None:intergenic |
AGCATATTCATACCAAGTGG+TGG | 0.641539 | 2.2:-22260135 | None:intergenic |
CACAGCAACCTTAAAGACAG+TGG | 0.642228 | 2.2:-22257690 | None:intergenic |
CTTAATCATACCGTTGACAG+AGG | 0.665226 | 2.2:-22261160 | None:intergenic |
GAGTCTGCTAGAGGCCCTGG+TGG | 0.667455 | 2.2:+22257901 | MS.gene065562:CDS |
AAAGCATTATGCAATGAGAG+TGG | 0.687726 | 2.2:+22259854 | MS.gene065562:CDS |
ATTGTGGTCATTGATAGGTG+TGG | 0.696169 | 2.2:+22260023 | MS.gene065562:CDS |
GTTCAAGAATGGGAGTCGAG+GGG | 0.707586 | 2.2:+22258825 | MS.gene065562:CDS |
GGATTGCAGATGTCACAGGA+CGG | 0.724946 | 2.2:+22260109 | MS.gene065562:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 22257683 | 22264665 | 22257683 | ID=MS.gene065562 |
chr2.2 | mRNA | 22257683 | 22264665 | 22257683 | ID=MS.gene065562.t1;Parent=MS.gene065562 |
chr2.2 | exon | 22257683 | 22257725 | 22257683 | ID=MS.gene065562.t1.exon1;Parent=MS.gene065562.t1 |
chr2.2 | CDS | 22257683 | 22257725 | 22257683 | ID=cds.MS.gene065562.t1;Parent=MS.gene065562.t1 |
chr2.2 | exon | 22257842 | 22257941 | 22257842 | ID=MS.gene065562.t1.exon2;Parent=MS.gene065562.t1 |
chr2.2 | CDS | 22257842 | 22257941 | 22257842 | ID=cds.MS.gene065562.t1;Parent=MS.gene065562.t1 |
chr2.2 | exon | 22258740 | 22258920 | 22258740 | ID=MS.gene065562.t1.exon3;Parent=MS.gene065562.t1 |
chr2.2 | CDS | 22258740 | 22258920 | 22258740 | ID=cds.MS.gene065562.t1;Parent=MS.gene065562.t1 |
chr2.2 | exon | 22259803 | 22259875 | 22259803 | ID=MS.gene065562.t1.exon4;Parent=MS.gene065562.t1 |
chr2.2 | CDS | 22259803 | 22259875 | 22259803 | ID=cds.MS.gene065562.t1;Parent=MS.gene065562.t1 |
chr2.2 | exon | 22259965 | 22260144 | 22259965 | ID=MS.gene065562.t1.exon5;Parent=MS.gene065562.t1 |
chr2.2 | CDS | 22259965 | 22260144 | 22259965 | ID=cds.MS.gene065562.t1;Parent=MS.gene065562.t1 |
chr2.2 | exon | 22261074 | 22261171 | 22261074 | ID=MS.gene065562.t1.exon6;Parent=MS.gene065562.t1 |
chr2.2 | CDS | 22261074 | 22261171 | 22261074 | ID=cds.MS.gene065562.t1;Parent=MS.gene065562.t1 |
chr2.2 | exon | 22262220 | 22262308 | 22262220 | ID=MS.gene065562.t1.exon7;Parent=MS.gene065562.t1 |
chr2.2 | CDS | 22262220 | 22262308 | 22262220 | ID=cds.MS.gene065562.t1;Parent=MS.gene065562.t1 |
chr2.2 | exon | 22262400 | 22262433 | 22262400 | ID=MS.gene065562.t1.exon8;Parent=MS.gene065562.t1 |
chr2.2 | CDS | 22262400 | 22262433 | 22262400 | ID=cds.MS.gene065562.t1;Parent=MS.gene065562.t1 |
chr2.2 | exon | 22262465 | 22262571 | 22262465 | ID=MS.gene065562.t1.exon9;Parent=MS.gene065562.t1 |
chr2.2 | CDS | 22262465 | 22262571 | 22262465 | ID=cds.MS.gene065562.t1;Parent=MS.gene065562.t1 |
chr2.2 | exon | 22264491 | 22264665 | 22264491 | ID=MS.gene065562.t1.exon10;Parent=MS.gene065562.t1 |
chr2.2 | CDS | 22264491 | 22264665 | 22264491 | ID=cds.MS.gene065562.t1;Parent=MS.gene065562.t1 |
Gene Sequence |
Protein sequence |