Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066876.t1 | RHN40643.1 | 93.6 | 690 | 44 | 0 | 3 | 692 | 5 | 694 | 5.90E-290 | 1006.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066876.t1 | Q9SA32 | 51.3 | 380 | 151 | 3 | 313 | 692 | 6 | 351 | 4.0e-93 | 344.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066876.t1 | A0A396GJC6 | 93.6 | 690 | 44 | 0 | 3 | 692 | 5 | 694 | 4.3e-290 | 1006.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049251 | MS.gene066876 | 0.806712 | 7.20E-50 | -1.69E-46 |
MS.gene049596 | MS.gene066876 | 0.808312 | 3.29E-50 | -1.69E-46 |
MS.gene050297 | MS.gene066876 | 0.810144 | 1.33E-50 | -1.69E-46 |
MS.gene05124 | MS.gene066876 | 0.822299 | 2.55E-53 | -1.69E-46 |
MS.gene051914 | MS.gene066876 | 0.823255 | 1.53E-53 | -1.69E-46 |
MS.gene051955 | MS.gene066876 | 0.809647 | 1.71E-50 | -1.69E-46 |
MS.gene052143 | MS.gene066876 | 0.800781 | 1.23E-48 | -1.69E-46 |
MS.gene052308 | MS.gene066876 | 0.815766 | 7.82E-52 | -1.69E-46 |
MS.gene052367 | MS.gene066876 | 0.822753 | 2.00E-53 | -1.69E-46 |
MS.gene053173 | MS.gene066876 | 0.828262 | 9.91E-55 | -1.69E-46 |
MS.gene053348 | MS.gene066876 | 0.838354 | 3.02E-57 | -1.69E-46 |
MS.gene053416 | MS.gene066876 | 0.801066 | 1.07E-48 | -1.69E-46 |
MS.gene054551 | MS.gene066876 | 0.835604 | 1.52E-56 | -1.69E-46 |
MS.gene054593 | MS.gene066876 | 0.837381 | 5.38E-57 | -1.69E-46 |
MS.gene054633 | MS.gene066876 | 0.833083 | 6.54E-56 | -1.69E-46 |
MS.gene054643 | MS.gene066876 | 0.808902 | 2.46E-50 | -1.69E-46 |
MS.gene055308 | MS.gene066876 | 0.824993 | 5.97E-54 | -1.69E-46 |
MS.gene055578 | MS.gene066876 | 0.837893 | 3.97E-57 | -1.69E-46 |
MS.gene056041 | MS.gene066876 | 0.852236 | 5.27E-61 | -1.69E-46 |
MS.gene05640 | MS.gene066876 | 0.834161 | 3.52E-56 | -1.69E-46 |
MS.gene057458 | MS.gene066876 | 0.80103 | 1.09E-48 | -1.69E-46 |
MS.gene058128 | MS.gene066876 | 0.815336 | 9.74E-52 | -1.69E-46 |
MS.gene058853 | MS.gene066876 | 0.845313 | 4.39E-59 | -1.69E-46 |
MS.gene059553 | MS.gene066876 | 0.815358 | 9.63E-52 | -1.69E-46 |
MS.gene059616 | MS.gene066876 | 0.803235 | 3.84E-49 | -1.69E-46 |
MS.gene060473 | MS.gene066876 | 0.81066 | 1.03E-50 | -1.69E-46 |
MS.gene060565 | MS.gene066876 | 0.810506 | 1.11E-50 | -1.69E-46 |
MS.gene06093 | MS.gene066876 | 0.825981 | 3.49E-54 | -1.69E-46 |
MS.gene061099 | MS.gene066876 | 0.849949 | 2.33E-60 | -1.69E-46 |
MS.gene061260 | MS.gene066876 | 0.855304 | 6.90E-62 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene045765 | MS.gene066876 | PPI |
MS.gene066876 | MS.gene028366 | PPI |
MS.gene066552 | MS.gene066876 | PPI |
MS.gene78156 | MS.gene066876 | PPI |
MS.gene55900 | MS.gene066876 | PPI |
MS.gene67743 | MS.gene066876 | PPI |
MS.gene066876 | MS.gene058245 | PPI |
MS.gene36424 | MS.gene066876 | PPI |
MS.gene009372 | MS.gene066876 | PPI |
MS.gene28739 | MS.gene066876 | PPI |
MS.gene074258 | MS.gene066876 | PPI |
MS.gene071261 | MS.gene066876 | PPI |
MS.gene066876 | MS.gene00063 | PPI |
MS.gene76034 | MS.gene066876 | PPI |
MS.gene35086 | MS.gene066876 | PPI |
MS.gene066551 | MS.gene066876 | PPI |
MS.gene00146 | MS.gene066876 | PPI |
MS.gene51515 | MS.gene066876 | PPI |
MS.gene55980 | MS.gene066876 | PPI |
MS.gene67725 | MS.gene066876 | PPI |
MS.gene67884 | MS.gene066876 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066876.t1 | MTR_5g023790 | 47.679 | 237 | 118 | 2 | 462 | 692 | 144 | 380 | 3.10e-65 | 221 |
MS.gene066876.t1 | MTR_5g023790 | 47.679 | 237 | 118 | 2 | 462 | 692 | 144 | 380 | 4.66e-65 | 221 |
MS.gene066876.t1 | MTR_5g088980 | 40.339 | 295 | 160 | 7 | 404 | 692 | 90 | 374 | 1.77e-63 | 217 |
MS.gene066876.t1 | MTR_8g074000 | 47.748 | 222 | 113 | 1 | 474 | 692 | 163 | 384 | 3.72e-61 | 211 |
MS.gene066876.t1 | MTR_7g089080 | 44.053 | 227 | 116 | 3 | 474 | 692 | 189 | 412 | 1.65e-54 | 202 |
MS.gene066876.t1 | MTR_5g023790 | 47.778 | 180 | 86 | 1 | 474 | 645 | 162 | 341 | 1.07e-47 | 172 |
MS.gene066876.t1 | MTR_1g011470 | 42.593 | 216 | 117 | 3 | 484 | 692 | 161 | 376 | 1.28e-47 | 174 |
MS.gene066876.t1 | MTR_3g107970 | 41.743 | 218 | 120 | 3 | 482 | 692 | 211 | 428 | 1.43e-47 | 175 |
MS.gene066876.t1 | MTR_2g102520 | 41.096 | 219 | 122 | 3 | 481 | 692 | 212 | 430 | 2.16e-46 | 172 |
MS.gene066876.t1 | MTR_2g102550 | 37.768 | 233 | 137 | 4 | 468 | 692 | 150 | 382 | 5.21e-44 | 164 |
MS.gene066876.t1 | MTR_3g088415 | 38.028 | 213 | 123 | 4 | 488 | 692 | 244 | 455 | 7.35e-43 | 162 |
MS.gene066876.t1 | MTR_3g088405 | 37.736 | 212 | 125 | 3 | 488 | 692 | 247 | 458 | 1.96e-41 | 158 |
MS.gene066876.t1 | MTR_3g088415 | 38.947 | 190 | 110 | 2 | 488 | 671 | 244 | 433 | 2.33e-40 | 154 |
MS.gene066876.t1 | MTR_3g102510 | 37.438 | 203 | 118 | 4 | 484 | 678 | 74 | 275 | 1.85e-36 | 140 |
MS.gene066876.t1 | MTR_3g060400 | 40.196 | 204 | 111 | 5 | 482 | 678 | 26 | 225 | 1.47e-35 | 136 |
MS.gene066876.t1 | MTR_3g460990 | 40.196 | 204 | 111 | 5 | 482 | 678 | 26 | 225 | 1.47e-35 | 136 |
MS.gene066876.t1 | MTR_1g018680 | 33.945 | 218 | 135 | 4 | 484 | 692 | 91 | 308 | 1.43e-34 | 135 |
MS.gene066876.t1 | MTR_3g060770 | 37.799 | 209 | 119 | 4 | 477 | 678 | 25 | 229 | 2.53e-34 | 132 |
MS.gene066876.t1 | MTR_3g102530 | 33.486 | 218 | 121 | 3 | 485 | 680 | 71 | 286 | 3.81e-34 | 134 |
MS.gene066876.t1 | MTR_3g102520 | 35.321 | 218 | 128 | 5 | 481 | 687 | 88 | 303 | 4.41e-34 | 134 |
MS.gene066876.t1 | MTR_3g060820 | 37.255 | 204 | 117 | 4 | 482 | 678 | 20 | 219 | 3.18e-33 | 129 |
MS.gene066876.t1 | MTR_3g061680 | 37.143 | 210 | 121 | 4 | 476 | 678 | 14 | 219 | 3.85e-33 | 129 |
MS.gene066876.t1 | MTR_3g060410 | 42.941 | 170 | 90 | 4 | 516 | 678 | 135 | 304 | 4.51e-33 | 131 |
MS.gene066876.t1 | MTR_3g088415 | 41.259 | 143 | 83 | 1 | 488 | 629 | 244 | 386 | 1.35e-32 | 130 |
MS.gene066876.t1 | MTR_3g102560 | 33.193 | 238 | 146 | 3 | 452 | 687 | 45 | 271 | 7.88e-32 | 126 |
MS.gene066876.t1 | MTR_3g102540 | 36.548 | 197 | 116 | 5 | 496 | 687 | 23 | 215 | 4.09e-29 | 117 |
MS.gene066876.t1 | MTR_6g045270 | 37.186 | 199 | 110 | 6 | 483 | 677 | 45 | 232 | 8.99e-26 | 108 |
MS.gene066876.t1 | MTR_5g011900 | 27.094 | 203 | 141 | 3 | 451 | 649 | 40 | 239 | 1.42e-16 | 80.1 |
MS.gene066876.t1 | MTR_1g032850 | 32.468 | 154 | 101 | 3 | 517 | 667 | 372 | 525 | 2.82e-16 | 82.8 |
MS.gene066876.t1 | MTR_5g044040 | 38.667 | 75 | 46 | 0 | 538 | 612 | 7 | 81 | 2.05e-13 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066876.t1 | AT1G16330 | 48.578 | 457 | 188 | 6 | 242 | 692 | 188 | 603 | 1.42e-131 | 403 |
MS.gene066876.t1 | AT5G06150 | 47.489 | 219 | 114 | 1 | 474 | 692 | 172 | 389 | 3.27e-66 | 225 |
MS.gene066876.t1 | AT1G20610 | 45.059 | 253 | 133 | 3 | 446 | 692 | 133 | 385 | 1.97e-65 | 223 |
MS.gene066876.t1 | AT3G11520 | 43.019 | 265 | 139 | 4 | 430 | 692 | 112 | 366 | 1.39e-64 | 220 |
MS.gene066876.t1 | AT1G76310 | 50.698 | 215 | 105 | 1 | 474 | 687 | 167 | 381 | 3.47e-64 | 218 |
MS.gene066876.t1 | AT3G11520 | 43.019 | 265 | 139 | 4 | 430 | 692 | 112 | 366 | 7.07e-64 | 217 |
MS.gene066876.t1 | AT1G76310 | 50.698 | 215 | 105 | 1 | 474 | 687 | 167 | 381 | 8.28e-64 | 218 |
MS.gene066876.t1 | AT2G26760 | 38.276 | 290 | 155 | 7 | 408 | 692 | 69 | 339 | 2.12e-60 | 208 |
MS.gene066876.t1 | AT1G76310 | 44.856 | 243 | 105 | 2 | 474 | 687 | 167 | 409 | 8.81e-58 | 203 |
MS.gene066876.t1 | AT4G37490 | 41.880 | 234 | 132 | 3 | 462 | 692 | 141 | 373 | 2.81e-57 | 201 |
MS.gene066876.t1 | AT5G11300 | 44.053 | 227 | 116 | 4 | 473 | 692 | 165 | 387 | 4.98e-53 | 189 |
MS.gene066876.t1 | AT2G17620 | 45.339 | 236 | 127 | 1 | 459 | 692 | 144 | 379 | 2.51e-51 | 184 |
MS.gene066876.t1 | AT4G35620 | 47.032 | 219 | 116 | 0 | 474 | 692 | 162 | 380 | 5.29e-51 | 182 |
MS.gene066876.t1 | AT4G35620 | 47.032 | 219 | 116 | 0 | 474 | 692 | 162 | 380 | 1.05e-50 | 182 |
MS.gene066876.t1 | AT5G25380 | 41.284 | 218 | 121 | 3 | 482 | 692 | 171 | 388 | 1.34e-47 | 174 |
MS.gene066876.t1 | AT5G25380 | 41.284 | 218 | 121 | 3 | 482 | 692 | 171 | 388 | 1.46e-47 | 174 |
MS.gene066876.t1 | AT5G25380 | 41.284 | 218 | 121 | 3 | 482 | 692 | 171 | 388 | 1.46e-47 | 174 |
MS.gene066876.t1 | AT5G25380 | 41.284 | 218 | 121 | 3 | 482 | 692 | 177 | 394 | 1.96e-47 | 174 |
MS.gene066876.t1 | AT1G76310 | 49.143 | 175 | 86 | 2 | 474 | 647 | 167 | 339 | 1.31e-46 | 169 |
MS.gene066876.t1 | AT5G11300 | 43.662 | 213 | 109 | 4 | 473 | 678 | 165 | 373 | 3.74e-46 | 169 |
MS.gene066876.t1 | AT5G06150 | 46.429 | 168 | 87 | 2 | 474 | 641 | 172 | 336 | 3.76e-46 | 167 |
MS.gene066876.t1 | AT1G15570 | 38.053 | 226 | 133 | 3 | 474 | 692 | 178 | 403 | 1.13e-45 | 169 |
MS.gene066876.t1 | AT1G80370 | 38.496 | 226 | 132 | 3 | 474 | 692 | 187 | 412 | 3.95e-45 | 168 |
MS.gene066876.t1 | AT5G43080 | 38.278 | 209 | 123 | 3 | 484 | 688 | 87 | 293 | 4.22e-43 | 159 |
MS.gene066876.t1 | AT1G44110 | 39.151 | 212 | 122 | 3 | 488 | 692 | 198 | 409 | 2.47e-42 | 160 |
MS.gene066876.t1 | AT1G20590 | 49.669 | 151 | 76 | 0 | 542 | 692 | 63 | 213 | 1.28e-41 | 152 |
MS.gene066876.t1 | AT5G43080 | 38.318 | 214 | 121 | 5 | 484 | 688 | 87 | 298 | 1.89e-41 | 155 |
MS.gene066876.t1 | AT1G47230 | 33.080 | 263 | 154 | 5 | 439 | 692 | 63 | 312 | 6.14e-41 | 154 |
MS.gene066876.t1 | AT1G47220 | 39.091 | 220 | 121 | 5 | 484 | 692 | 56 | 273 | 6.60e-40 | 150 |
MS.gene066876.t1 | AT1G47210 | 36.818 | 220 | 126 | 5 | 484 | 692 | 102 | 319 | 1.43e-39 | 150 |
MS.gene066876.t1 | AT1G47230 | 32.955 | 264 | 154 | 6 | 439 | 692 | 63 | 313 | 2.57e-39 | 149 |
MS.gene066876.t1 | AT1G77390 | 37.850 | 214 | 122 | 4 | 488 | 692 | 182 | 393 | 7.52e-39 | 149 |
MS.gene066876.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 474 | 637 | 262 | 404 | 3.49e-27 | 116 |
MS.gene066876.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 474 | 637 | 259 | 401 | 3.55e-27 | 116 |
MS.gene066876.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 474 | 637 | 259 | 401 | 3.55e-27 | 116 |
MS.gene066876.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 474 | 637 | 248 | 390 | 3.91e-27 | 115 |
MS.gene066876.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 474 | 637 | 262 | 404 | 4.36e-27 | 115 |
MS.gene066876.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 474 | 637 | 262 | 404 | 4.36e-27 | 115 |
MS.gene066876.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 474 | 637 | 262 | 404 | 4.36e-27 | 115 |
MS.gene066876.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 474 | 637 | 262 | 404 | 4.36e-27 | 115 |
MS.gene066876.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 474 | 637 | 262 | 404 | 5.49e-27 | 115 |
MS.gene066876.t1 | AT1G47210 | 42.857 | 91 | 49 | 2 | 484 | 571 | 102 | 192 | 6.96e-17 | 80.1 |
MS.gene066876.t1 | AT1G14750 | 33.742 | 163 | 104 | 3 | 510 | 669 | 380 | 541 | 2.11e-16 | 83.6 |
MS.gene066876.t1 | AT1G14750 | 33.742 | 163 | 104 | 3 | 510 | 669 | 380 | 541 | 2.95e-16 | 83.2 |
MS.gene066876.t1 | AT1G14750 | 33.742 | 163 | 104 | 3 | 510 | 669 | 212 | 373 | 1.62e-15 | 79.7 |
MS.gene066876.t1 | AT1G14750 | 33.742 | 163 | 103 | 4 | 510 | 669 | 212 | 372 | 1.11e-14 | 77.0 |
Find 152 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAGGTTCTTACTTAATTT+TGG | 0.126058 | 8.1:+57937193 | None:intergenic |
CTCTGCCAGTTACAGGTTTA+AGG | 0.127014 | 8.1:-57935373 | MS.gene066876:CDS |
GTTTCGTTCTTGCATGTTTC+AGG | 0.152281 | 8.1:-57938636 | None:intergenic |
AATTAGTAGGCACAGGTTTA+AGG | 0.156384 | 8.1:-57935728 | MS.gene066876:intron |
ATCTTATACAACTTCATTAA+TGG | 0.209874 | 8.1:-57933021 | MS.gene066876:CDS |
ATGCTATATATCAGTACTAT+TGG | 0.246809 | 8.1:-57932818 | MS.gene066876:CDS |
AGGAAGTCTCTGCCAGTTAC+AGG | 0.257709 | 8.1:-57935380 | MS.gene066876:CDS |
TTGCAGATTCTCAAGGAAAA+TGG | 0.281849 | 8.1:-57932915 | MS.gene066876:intron |
CCTCAAAGTATGAGGACTTT+TGG | 0.284590 | 8.1:-57931190 | MS.gene066876:CDS |
AACTAGTACAATTGCCTCTA+AGG | 0.304795 | 8.1:-57933294 | MS.gene066876:CDS |
AACAAAACATGTGGAGCTTC+TGG | 0.315400 | 8.1:-57937388 | MS.gene066876:intron |
AACTTGAATCCGGTCAATTT+CGG | 0.318319 | 8.1:+57938424 | None:intergenic |
TCAAGGAAAATGGTGAAGTT+AGG | 0.319988 | 8.1:-57932905 | MS.gene066876:CDS |
TGATTTGTTCTGGCCTGATA+TGG | 0.332477 | 8.1:+57933322 | None:intergenic |
CAGTTCCAAGGAGGGTAAAC+AGG | 0.338773 | 8.1:-57935020 | MS.gene066876:CDS |
CTAAAATCTAAATCCATATC+AGG | 0.341068 | 8.1:-57933335 | MS.gene066876:CDS |
TGCTCCTTGCATTAATTAGT+TGG | 0.354273 | 8.1:+57934625 | None:intergenic |
CTTTGGATTAGCGGCAGTAT+TGG | 0.366466 | 8.1:+57937578 | None:intergenic |
TGCTATATATCAGTACTATT+GGG | 0.372911 | 8.1:-57932817 | MS.gene066876:CDS |
TCACAAAACCTTGTAGTTGT+AGG | 0.374254 | 8.1:+57935494 | None:intergenic |
TTAATGCAAGGAGCAATCTA+TGG | 0.378840 | 8.1:-57934617 | MS.gene066876:CDS |
ATTAGTAGGCACAGGTTTAA+GGG | 0.382551 | 8.1:-57935727 | MS.gene066876:intron |
ATGTCTTTGACTTGCATCAT+TGG | 0.383091 | 8.1:+57933220 | None:intergenic |
TCTGCCAGTTACAGGTTTAA+GGG | 0.386828 | 8.1:-57935372 | MS.gene066876:CDS |
CTTGTAATTGTGGGTAACAT+AGG | 0.388170 | 8.1:+57935148 | None:intergenic |
CTGTTTACCCTCCTTGGAAC+TGG | 0.389619 | 8.1:+57935021 | None:intergenic |
TACCTATCCTTTGTGCCAAC+TGG | 0.389906 | 8.1:+57935660 | None:intergenic |
GAAGCCCTTAAACCTGTAAC+TGG | 0.401913 | 8.1:+57935368 | None:intergenic |
ACAGGTTTAAGGGCTTCTTT+AGG | 0.403015 | 8.1:-57935362 | MS.gene066876:CDS |
TCTACCCTGTTTACCCTCCT+TGG | 0.405631 | 8.1:+57935015 | None:intergenic |
GCCTCTGAATCGCGTCCAAC+TGG | 0.413116 | 8.1:-57938587 | MS.gene066876:intron |
TGCGGGGAGTATTGGTCAAC+TGG | 0.421771 | 8.1:-57931539 | MS.gene066876:CDS |
GCTCCTTGCATTAATTAGTT+GGG | 0.422245 | 8.1:+57934626 | None:intergenic |
TTAGAGGCAATTGTACTAGT+TGG | 0.428782 | 8.1:+57933296 | None:intergenic |
GGCTCGAGTTGAGCCCAATC+TGG | 0.429781 | 8.1:+57938607 | None:intergenic |
ATGTTTCTTCCAGCACTTCA+AGG | 0.433166 | 8.1:-57935400 | MS.gene066876:intron |
TCCTCATATGCGGGGAGTAT+TGG | 0.436208 | 8.1:-57931547 | MS.gene066876:CDS |
AAACAGTGGGCATCCCTTTG+AGG | 0.437482 | 8.1:-57936922 | MS.gene066876:CDS |
AACCCCTTTGTTAGCTGCTA+TGG | 0.437995 | 8.1:+57937605 | None:intergenic |
TTGATTGTGGTCTTAACAAC+AGG | 0.438316 | 8.1:+57933380 | None:intergenic |
CCAAAAGTCCTCATACTTTG+AGG | 0.440603 | 8.1:+57931190 | None:intergenic |
TTCGCAAACCTTGTAATTGT+GGG | 0.442913 | 8.1:+57935139 | None:intergenic |
CTTGTAGTTGTAGGTAACAT+AGG | 0.444522 | 8.1:+57935503 | None:intergenic |
AGGACTTCTGCAAGAGAAGT+TGG | 0.449064 | 8.1:-57938310 | MS.gene066876:CDS |
GGGAAATAAGTCACCTCCAT+TGG | 0.449283 | 8.1:+57935809 | None:intergenic |
CTGACTTTCTTGAGGAGACT+TGG | 0.449935 | 8.1:+57933765 | None:intergenic |
CGGAAGAATAGTTCATCAAA+TGG | 0.450007 | 8.1:-57935690 | MS.gene066876:CDS |
ATTCGCAAACCTTGTAATTG+TGG | 0.452704 | 8.1:+57935138 | None:intergenic |
TGTCTGTTCCAAGCACTTCA+AGG | 0.453793 | 8.1:-57935053 | MS.gene066876:intron |
CCCTTTGAGGAAATCCTTCA+CGG | 0.456403 | 8.1:-57936909 | MS.gene066876:intron |
CAAGGAAAATGGTGAAGTTA+GGG | 0.456754 | 8.1:-57932904 | MS.gene066876:CDS |
TGCCTTACCAGGGTTTCAGC+AGG | 0.457395 | 8.1:-57936956 | MS.gene066876:intron |
TGAAGTAGTGGTGTCCATGA+TGG | 0.459792 | 8.1:+57930161 | None:intergenic |
AAATGGTGAAGTTAGGGAGC+AGG | 0.462821 | 8.1:-57932898 | MS.gene066876:CDS |
GTTTCAGGTAAAATCCAGAT+TGG | 0.463789 | 8.1:-57938621 | MS.gene066876:CDS |
CTATGTTACCCACAATTACA+AGG | 0.468217 | 8.1:-57935147 | MS.gene066876:intron |
ATATCTGACAGTGACATTGT+TGG | 0.470336 | 8.1:-57931285 | MS.gene066876:CDS |
GAAGTAGTGGTGTCCATGAT+GGG | 0.471578 | 8.1:+57930162 | None:intergenic |
TGTATAAGATTTCCGACGGC+TGG | 0.471671 | 8.1:+57933034 | None:intergenic |
GAGAAGTTGGCGCAGCTTCA+AGG | 0.471958 | 8.1:-57938297 | MS.gene066876:intron |
GATCAGAAGAATAATTCAAA+TGG | 0.472744 | 8.1:-57935338 | MS.gene066876:CDS |
GTTATGAAGTTTCACAGATC+AGG | 0.476147 | 8.1:-57930127 | None:intergenic |
ACAGGTTTAAGGGTTTCCTT+AGG | 0.478290 | 8.1:-57935717 | MS.gene066876:intron |
TGGAAGACCACTTTGGCCAC+TGG | 0.483759 | 8.1:+57934772 | None:intergenic |
GTGCCATAGCAGCTAACAAA+GGG | 0.485499 | 8.1:-57937608 | MS.gene066876:CDS |
TATACAAGAGATCAAATGCT+TGG | 0.491502 | 8.1:-57931033 | MS.gene066876:CDS |
CATACTTTGAGGCCAACAAA+AGG | 0.492005 | 8.1:+57931201 | None:intergenic |
AGGAAATATGAAAGCGAGAA+AGG | 0.495289 | 8.1:-57937276 | MS.gene066876:CDS |
TTTCAGGTAAAATCCAGATT+GGG | 0.496626 | 8.1:-57938620 | MS.gene066876:CDS |
TGTTGTTAAGACCACAATCA+AGG | 0.496768 | 8.1:-57933378 | MS.gene066876:CDS |
TTACATTCATCGTCTATACT+TGG | 0.497518 | 8.1:+57932867 | None:intergenic |
CACTGTCAGATATAGTGTCT+CGG | 0.498442 | 8.1:+57931295 | None:intergenic |
TTTGTTGGCCTCAAAGTATG+AGG | 0.498991 | 8.1:-57931198 | MS.gene066876:CDS |
ACCCATCACCAACTTGAATC+CGG | 0.499561 | 8.1:+57938414 | None:intergenic |
GACCGGATTCAAGTTGGTGA+TGG | 0.501396 | 8.1:-57938416 | MS.gene066876:CDS |
GGCTGCACAATCAGATATGA+AGG | 0.502649 | 8.1:-57930449 | MS.gene066876:intron |
GTATATTACCTTTGGATTAG+CGG | 0.512604 | 8.1:+57937569 | None:intergenic |
ATGACAACTGAATTATTCTC+AGG | 0.516778 | 8.1:+57933146 | None:intergenic |
TGGGGAGAGCAGTTTGAAAA+CGG | 0.518960 | 8.1:-57933087 | MS.gene066876:CDS |
ACTGTCAGATATAGTGTCTC+GGG | 0.522142 | 8.1:+57931296 | None:intergenic |
ACCGGATTCAAGTTGGTGAT+GGG | 0.523190 | 8.1:-57938415 | MS.gene066876:CDS |
CCTTAATTTGCAGATTCTCA+AGG | 0.524626 | 8.1:-57932922 | MS.gene066876:intron |
CTATGTTACCTACAACTACA+AGG | 0.525004 | 8.1:-57935502 | MS.gene066876:intron |
TCTCAAGTACCTATCCTTTG+TGG | 0.526837 | 8.1:+57935301 | None:intergenic |
TATGAAAGCGAGAAAGGCAT+TGG | 0.528115 | 8.1:-57937270 | MS.gene066876:CDS |
ACCAATACTCCCCGCATATG+AGG | 0.531007 | 8.1:+57931546 | None:intergenic |
AGAGATTACTCCTCATATGC+GGG | 0.536325 | 8.1:-57931556 | MS.gene066876:CDS |
TACAATTGCCTCTAAGGATG+AGG | 0.537132 | 8.1:-57933288 | MS.gene066876:CDS |
TCTTACTTGGAAGACCACTT+TGG | 0.541955 | 8.1:+57934765 | None:intergenic |
TAAGGGTTTCCTTAGGTGAT+CGG | 0.541985 | 8.1:-57935710 | MS.gene066876:CDS |
TGTAGAGCTTCCTTGAGCAT+TGG | 0.542467 | 8.1:+57937238 | None:intergenic |
CAATTAGATGCTTCCAATGG+AGG | 0.543103 | 8.1:-57935822 | MS.gene066876:intron |
CCGTGAAGGATTTCCTCAAA+GGG | 0.543716 | 8.1:+57936909 | None:intergenic |
TACCTTGACTGACTTTCTTG+AGG | 0.544981 | 8.1:+57933757 | None:intergenic |
ACGAGTGAGATGCAGTTAGT+TGG | 0.548556 | 8.1:-57931233 | MS.gene066876:CDS |
AAAGACATCAACCATCTGAT+GGG | 0.554208 | 8.1:-57933205 | MS.gene066876:CDS |
ACCGTGAAGGATTTCCTCAA+AGG | 0.554678 | 8.1:+57936908 | None:intergenic |
CAAAGACATCGACCATCTGA+TGG | 0.555227 | 8.1:-57933107 | MS.gene066876:CDS |
ATACTTTGAGGCCAACAAAA+GGG | 0.555362 | 8.1:+57931202 | None:intergenic |
CACTGCAAATAACCCCATCA+TGG | 0.557574 | 8.1:-57930175 | MS.gene066876:CDS |
ATTCATCGTCTATACTTGGT+AGG | 0.558688 | 8.1:+57932871 | None:intergenic |
ACTATTCTTCCGATCACCTA+AGG | 0.561914 | 8.1:+57935701 | None:intergenic |
AAAGACATCGACCATCTGAT+GGG | 0.563380 | 8.1:-57933106 | MS.gene066876:CDS |
GAAATTGACCGGATTCAAGT+TGG | 0.565766 | 8.1:-57938422 | MS.gene066876:CDS |
ATTGGTCAACTGGCTAATTG+AGG | 0.566050 | 8.1:-57931529 | MS.gene066876:intron |
ATACTGCACTCCCCATCAGA+TGG | 0.569624 | 8.1:+57933194 | None:intergenic |
GTTCAATTAGATGCTTCCAA+TGG | 0.571665 | 8.1:-57935825 | MS.gene066876:CDS |
CAAAGACATCAACCATCTGA+TGG | 0.574777 | 8.1:-57933206 | MS.gene066876:CDS |
AAGAGATCAAATGCTTGGAA+TGG | 0.575226 | 8.1:-57931028 | MS.gene066876:intron |
GTTCCCAACTAATTAATGCA+AGG | 0.576421 | 8.1:-57934629 | MS.gene066876:CDS |
ACCAGTTGGACGCGATTCAG+AGG | 0.576483 | 8.1:+57938586 | None:intergenic |
AATCAGTTGCCACAAAGGAT+AGG | 0.580793 | 8.1:-57935310 | MS.gene066876:intron |
CAATACTGCCGCTAATCCAA+AGG | 0.583084 | 8.1:-57937577 | MS.gene066876:intron |
AAACTGCTCTCCCCATCAGA+TGG | 0.584983 | 8.1:+57933095 | None:intergenic |
GGAAGTCTCTGCCAGTTCCA+AGG | 0.587112 | 8.1:-57935032 | MS.gene066876:CDS |
TACTTCCAATCGCAGGCACA+TGG | 0.589068 | 8.1:-57931612 | MS.gene066876:intron |
GAAGGGTGATTTCAAAAGCA+TGG | 0.592171 | 8.1:-57937419 | MS.gene066876:intron |
CAGAAGAATAATTCAAATGG+AGG | 0.592330 | 8.1:-57935335 | MS.gene066876:CDS |
CTTCATATTCAACTAAGCAT+AGG | 0.594043 | 8.1:+57930255 | None:intergenic |
GTCTCTGCCAGTTCCAAGGA+GGG | 0.594149 | 8.1:-57935028 | MS.gene066876:CDS |
TCTTTCTGATAACAGTTCAG+TGG | 0.602262 | 8.1:-57933249 | MS.gene066876:CDS |
GAGAAAAGTAACAAAACATG+TGG | 0.602918 | 8.1:-57937397 | MS.gene066876:CDS |
AGGTTCAACCACTAAAACAG+TGG | 0.606699 | 8.1:-57936936 | MS.gene066876:CDS |
GCTGATGTTACCAATGCTCA+AGG | 0.609500 | 8.1:-57937248 | MS.gene066876:CDS |
GCTGATGCGCATAGTAGTGA+AGG | 0.610271 | 8.1:+57930218 | None:intergenic |
CTCCTCAAGAAAGTCAGTCA+AGG | 0.612330 | 8.1:-57933759 | MS.gene066876:intron |
AACCAGTTGGCACAAAGGAT+AGG | 0.612355 | 8.1:-57935662 | MS.gene066876:intron |
TTATATGAAGCAGTGGGTGG+TGG | 0.612502 | 8.1:-57938467 | MS.gene066876:intron |
TGGAAGACTCGAGTTAGTGA+TGG | 0.613219 | 8.1:-57934597 | MS.gene066876:CDS |
AGGTCAATCAGTTGCCACAA+AGG | 0.614915 | 8.1:-57935315 | MS.gene066876:CDS |
TCAAATGGAGGTCAACCAGT+TGG | 0.620772 | 8.1:-57935675 | MS.gene066876:CDS |
CAGAGATTACTCCTCATATG+CGG | 0.620861 | 8.1:-57931557 | MS.gene066876:CDS |
AAGTTGTATAAGATTTCCGA+CGG | 0.622303 | 8.1:+57933030 | None:intergenic |
AGTTCCAAGGAGGGTAAACA+GGG | 0.627018 | 8.1:-57935019 | MS.gene066876:CDS |
AGGTCAACCAGTTGGCACAA+AGG | 0.627713 | 8.1:-57935667 | MS.gene066876:CDS |
GAAACAGCCAGTGGCCAAAG+TGG | 0.629869 | 8.1:-57934779 | MS.gene066876:CDS |
AAGGAGTGGGAGCATTAAGA+CGG | 0.642469 | 8.1:+57930497 | None:intergenic |
AAGAATAGTTCATCAAATGG+AGG | 0.648198 | 8.1:-57935687 | MS.gene066876:CDS |
GGTTCAACCACTAAAACAGT+GGG | 0.650460 | 8.1:-57936935 | MS.gene066876:CDS |
AGATGTAGAAGCCTTGATTG+TGG | 0.654920 | 8.1:+57933367 | None:intergenic |
TGTGACTTTCCATACCGTGA+AGG | 0.662185 | 8.1:+57936895 | None:intergenic |
AAGTAGTGGTGTCCATGATG+GGG | 0.666437 | 8.1:+57930163 | None:intergenic |
AAGACATCAACCATCTGATG+GGG | 0.669550 | 8.1:-57933204 | MS.gene066876:CDS |
TCAGTACTATTGGGTTACTG+AGG | 0.675513 | 8.1:-57932808 | MS.gene066876:intron |
AGTCTCTGCCAGTTCCAAGG+AGG | 0.676674 | 8.1:-57935029 | MS.gene066876:CDS |
AAGACATCGACCATCTGATG+GGG | 0.684383 | 8.1:-57933105 | MS.gene066876:CDS |
GAGATTACTCCTCATATGCG+GGG | 0.688505 | 8.1:-57931555 | MS.gene066876:CDS |
AGTGCCATAGCAGCTAACAA+AGG | 0.688688 | 8.1:-57937609 | MS.gene066876:CDS |
GGTAGAGATGAATAACACAA+AGG | 0.692382 | 8.1:-57934998 | MS.gene066876:intron |
GGAAGTTCTGAAACAGCCAG+TGG | 0.695203 | 8.1:-57934788 | MS.gene066876:CDS |
TCAAGGCTTCTACATCTCAG+AGG | 0.717453 | 8.1:-57933361 | MS.gene066876:CDS |
TGCCATAGCAGCTAACAAAG+GGG | 0.737862 | 8.1:-57937607 | MS.gene066876:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 57930128 | 57938645 | 57930128 | ID=MS.gene066876 |
chr8.1 | mRNA | 57930128 | 57938645 | 57930128 | ID=MS.gene066876.t1;Parent=MS.gene066876 |
chr8.1 | exon | 57938588 | 57938645 | 57938588 | ID=MS.gene066876.t1.exon1;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57938588 | 57938645 | 57938588 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57938407 | 57938476 | 57938407 | ID=MS.gene066876.t1.exon2;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57938407 | 57938476 | 57938407 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57938298 | 57938330 | 57938298 | ID=MS.gene066876.t1.exon3;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57938298 | 57938330 | 57938298 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57937578 | 57937635 | 57937578 | ID=MS.gene066876.t1.exon4;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57937578 | 57937635 | 57937578 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57937389 | 57937437 | 57937389 | ID=MS.gene066876.t1.exon5;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57937389 | 57937437 | 57937389 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57937206 | 57937296 | 57937206 | ID=MS.gene066876.t1.exon6;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57937206 | 57937296 | 57937206 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57936910 | 57936967 | 57936910 | ID=MS.gene066876.t1.exon7;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57936910 | 57936967 | 57936910 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57935823 | 57935880 | 57935823 | ID=MS.gene066876.t1.exon8;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57935823 | 57935880 | 57935823 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57935663 | 57935735 | 57935663 | ID=MS.gene066876.t1.exon9;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57935663 | 57935735 | 57935663 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57935503 | 57935538 | 57935503 | ID=MS.gene066876.t1.exon10;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57935503 | 57935538 | 57935503 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57935311 | 57935409 | 57935311 | ID=MS.gene066876.t1.exon11;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57935311 | 57935409 | 57935311 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57935148 | 57935183 | 57935148 | ID=MS.gene066876.t1.exon12;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57935148 | 57935183 | 57935148 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57934999 | 57935062 | 57934999 | ID=MS.gene066876.t1.exon13;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57934999 | 57935062 | 57934999 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57934771 | 57934819 | 57934771 | ID=MS.gene066876.t1.exon14;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57934771 | 57934819 | 57934771 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57934585 | 57934678 | 57934585 | ID=MS.gene066876.t1.exon15;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57934585 | 57934678 | 57934585 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57933760 | 57933805 | 57933760 | ID=MS.gene066876.t1.exon16;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57933760 | 57933805 | 57933760 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57933010 | 57933402 | 57933010 | ID=MS.gene066876.t1.exon17;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57933010 | 57933402 | 57933010 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57932809 | 57932931 | 57932809 | ID=MS.gene066876.t1.exon18;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57932809 | 57932931 | 57932809 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57931530 | 57931619 | 57931530 | ID=MS.gene066876.t1.exon19;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57931530 | 57931619 | 57931530 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57931181 | 57931342 | 57931181 | ID=MS.gene066876.t1.exon20;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57931181 | 57931342 | 57931181 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57931029 | 57931088 | 57931029 | ID=MS.gene066876.t1.exon21;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57931029 | 57931088 | 57931029 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57930450 | 57930548 | 57930450 | ID=MS.gene066876.t1.exon22;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57930450 | 57930548 | 57930450 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
chr8.1 | exon | 57930128 | 57930306 | 57930128 | ID=MS.gene066876.t1.exon23;Parent=MS.gene066876.t1 |
chr8.1 | CDS | 57930128 | 57930306 | 57930128 | ID=cds.MS.gene066876.t1;Parent=MS.gene066876.t1 |
Gene Sequence |
Protein sequence |