AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067746


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067746.t1 MTR_4g052910 98.333 120 2 0 1 120 44 163 1.15e-82 239
MS.gene067746.t1 MTR_4g052910 98.333 120 2 0 1 120 1 120 1.26e-82 237
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067746.t1 AT2G27730 58.197 122 39 5 1 119 1 113 5.15e-30 104
MS.gene067746.t1 AT2G27730 58.197 122 39 5 1 119 1 113 5.15e-30 104
MS.gene067746.t1 AT2G27730 58.197 122 39 5 1 119 1 113 5.15e-30 104
MS.gene067746.t1 AT2G27730 58.197 122 39 5 1 119 1 113 5.15e-30 104

Find 36 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTTTGCAGTGCCTTTA+AGG 0.112066 4.2:-49379164 None:intergenic
CTTCAGTCTTCCTGCACTTC+TGG 0.166667 4.2:-49379186 None:intergenic
GCCTTAGGTTGGTACCTTAA+AGG 0.213610 4.2:+49379150 MS.gene067746:CDS
CCTGCAGCTGGTGTTGCTTC+TGG 0.232336 4.2:-49379000 None:intergenic
AGTGACAAATACCGGAATTA+TGG 0.295334 4.2:+49379096 MS.gene067746:CDS
GCAACACCAGCTGCAGGTTC+AGG 0.372347 4.2:+49379006 MS.gene067746:CDS
GCTGGTGTTGCTTCTGGTTG+AGG 0.375661 4.2:-49378994 None:intergenic
GAAAGCTGAGCAAGAGAAGT+TGG 0.381787 4.2:+49376413 MS.gene067746:intron
GTATTTGTCACTTGAAACTT+TGG 0.390932 4.2:-49379085 None:intergenic
AGGCTATTTAGCAGTGGCTC+TGG 0.405468 4.2:+49375122 MS.gene067746:CDS
AGTGGCTCTGGGAAAGTTCT+TGG 0.406187 4.2:+49375134 MS.gene067746:CDS
TATTTGTCACTTGAAACTTT+GGG 0.432133 4.2:-49379084 None:intergenic
CGGAATTATGGAGTCGTAGC+TGG 0.436209 4.2:+49379108 MS.gene067746:CDS
CAGCTACGACTCCATAATTC+CGG 0.436283 4.2:-49379107 None:intergenic
ATGTCCAGAGCCACTTGGTT+TGG 0.438617 4.2:-49379046 None:intergenic
TGCAAAGAAGCCAGAAGTGC+AGG 0.445155 4.2:+49379176 MS.gene067746:CDS
TGCGGAAAATGCTTACTTCA+AGG 0.458195 4.2:+49375172 MS.gene067746:CDS
CAGCAAGATTTGCATCTAGA+AGG 0.476156 4.2:+49375102 MS.gene067746:CDS
GGCTATTTAGCAGTGGCTCT+GGG 0.480604 4.2:+49375123 MS.gene067746:CDS
GATGCCAAACCAAGTGGCTC+TGG 0.486204 4.2:+49379042 MS.gene067746:CDS
GTTGGAGAAGCTTGCTCGCA+AGG 0.496581 4.2:+49376431 MS.gene067746:CDS
TCTGGACATTCTGATACATC+AGG 0.522144 4.2:+49379060 MS.gene067746:CDS
AAGTTTCAAGTGACAAATAC+CGG 0.523388 4.2:+49379088 MS.gene067746:CDS
AGAGCCACTTGGTTTGGCAT+CGG 0.530012 4.2:-49379040 None:intergenic
GCCTTTAAGGTACCAACCTA+AGG 0.543907 4.2:-49379151 None:intergenic
CTCTGGGAAAGTTCTTGGTG+AGG 0.550551 4.2:+49375139 MS.gene067746:CDS
CCAGAAGCAACACCAGCTGC+AGG 0.553579 4.2:+49379000 MS.gene067746:CDS
AACTGACAGCAATGGCAACA+CGG 0.581700 4.2:+49375075 None:intergenic
ACTGACAGCAATGGCAACAC+GGG 0.584119 4.2:+49375076 None:intergenic
TGGGAAAGTTCTTGGTGAGG+AGG 0.587276 4.2:+49375142 MS.gene067746:CDS
GAACCACCTGAACCTGCAGC+TGG 0.596837 4.2:-49379012 None:intergenic
TCAGAATGTCCAGAGCCACT+TGG 0.611946 4.2:-49379051 None:intergenic
ACACCAGCTGCAGGTTCAGG+TGG 0.626643 4.2:+49379009 MS.gene067746:CDS
GACAGCAATGGCAACACGGG+TGG 0.644840 4.2:+49375079 None:intergenic
TCTAGAAGGCTATTTAGCAG+TGG 0.663582 4.2:+49375116 MS.gene067746:CDS
GTAACCGATGCCAAACCAAG+TGG 0.684341 4.2:+49379036 MS.gene067746:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAAACTTGAAAAAA+TGG + chr4.2:49378381-49378400 MS.gene067746:intron 10.0%
!! AAATAAAATTGCTAATTATT+TGG - chr4.2:49378617-49378636 None:intergenic 10.0%
!! TAAATTATAATCATCATTTA+TGG - chr4.2:49377798-49377817 None:intergenic 10.0%
!!! AATATATTTTAATATGTACA+GGG - chr4.2:49377864-49377883 None:intergenic 10.0%
!!! TAATATATTTTAATATGTAC+AGG - chr4.2:49377865-49377884 None:intergenic 10.0%
!! AAAAAAAAACTGCATTAAAA+AGG - chr4.2:49375751-49375770 None:intergenic 15.0%
!! GAAAAATAGGTAAAATTAAA+GGG + chr4.2:49376820-49376839 MS.gene067746:intron 15.0%
!!! ATATATTTTAATATGTACAG+GGG - chr4.2:49377863-49377882 None:intergenic 15.0%
!!! CCTTTAGTATTTTTTTTTTT+GGG - chr4.2:49377339-49377358 None:intergenic 15.0%
!!! TATTTCAAATGATTTCATTT+TGG + chr4.2:49375808-49375827 MS.gene067746:intron 15.0%
!!! TTTTTTTTTGGGATTTAAAT+GGG - chr4.2:49377328-49377347 None:intergenic 15.0%
!!! TTTTTTTTTTGGGATTTAAA+TGG - chr4.2:49377329-49377348 None:intergenic 15.0%
!! AATATGATACAAGATAGATA+TGG + chr4.2:49377678-49377697 MS.gene067746:intron 20.0%
!! AATTTGCATGATATCTTTAT+AGG - chr4.2:49377892-49377911 None:intergenic 20.0%
!! ACATTTAGTACTTATTTGAT+GGG - chr4.2:49376879-49376898 None:intergenic 20.0%
!! ATATGATACAAGATAGATAT+GGG + chr4.2:49377679-49377698 MS.gene067746:intron 20.0%
!! ATCATCTAGTTAAAATAACA+TGG - chr4.2:49378273-49378292 None:intergenic 20.0%
!! ATTTCAATTTCCTAATAAAC+AGG - chr4.2:49377430-49377449 None:intergenic 20.0%
!! ATTTGCATGATATCTTTATA+GGG - chr4.2:49377891-49377910 None:intergenic 20.0%
!! CATATTAAGTATAAGTATGT+GGG - chr4.2:49377664-49377683 None:intergenic 20.0%
!! CCCAAAAAAAAAAATACTAA+AGG + chr4.2:49377336-49377355 MS.gene067746:intron 20.0%
!! GGAAAAATAGGTAAAATTAA+AGG + chr4.2:49376819-49376838 MS.gene067746:intron 20.0%
!! TACATTTAGTACTTATTTGA+TGG - chr4.2:49376880-49376899 None:intergenic 20.0%
!! TCATATTAAGTATAAGTATG+TGG - chr4.2:49377665-49377684 None:intergenic 20.0%
!! TTCTTCTAATTTCTAACAAA+AGG + chr4.2:49376109-49376128 MS.gene067746:intron 20.0%
!!! AAATGATTTCATTTTGGATA+TGG + chr4.2:49375814-49375833 MS.gene067746:intron 20.0%
!!! CGTTTTATTATAACCTTAAA+AGG - chr4.2:49378548-49378567 None:intergenic 20.0%
!!! CTTTTAGAACTTGATTTTAA+TGG - chr4.2:49376965-49376984 None:intergenic 20.0%
!!! CTTTTGATATGATATGTAAT+CGG + chr4.2:49377968-49377987 MS.gene067746:intron 20.0%
!!! GAAATTTTTATCAGTTTTTG+TGG + chr4.2:49376598-49376617 MS.gene067746:intron 20.0%
!!! GATTTTAAACATGTTTTAGA+AGG - chr4.2:49375587-49375606 None:intergenic 20.0%
!!! GCCTTTAGTATTTTTTTTTT+TGG - chr4.2:49377340-49377359 None:intergenic 20.0%
!!! TACTTACAACTTTTAACTAA+AGG + chr4.2:49378590-49378609 MS.gene067746:intron 20.0%
!!! TTTATTTTCGTAATTGCTAT+CGG + chr4.2:49375244-49375263 MS.gene067746:intron 20.0%
!!! TTTTTAAAAAGGAAATGTCA+TGG + chr4.2:49375658-49375677 MS.gene067746:intron 20.0%
! AAGCATTTATGTTCTAATGT+AGG + chr4.2:49378969-49378988 MS.gene067746:intron 25.0%
! AATGCTTAACATTAAGTTCA+AGG - chr4.2:49378956-49378975 None:intergenic 25.0%
! AGCATTTATGTTCTAATGTA+GGG + chr4.2:49378970-49378989 MS.gene067746:intron 25.0%
! ATACTCAAAAGTGGAAAAAT+AGG + chr4.2:49376807-49376826 MS.gene067746:intron 25.0%
! ATATGATATGTAATCGGATA+AGG + chr4.2:49377974-49377993 MS.gene067746:intron 25.0%
! ATATTATCTTGTTCATCACT+TGG + chr4.2:49377053-49377072 MS.gene067746:intron 25.0%
! ATTATTATTAGTGTTGTGTC+CGG + chr4.2:49375361-49375380 MS.gene067746:intron 25.0%
! ATTCTTTATAAACACTACAC+AGG - chr4.2:49375980-49375999 None:intergenic 25.0%
! ATTGACATAAGTTAGAGAAA+CGG - chr4.2:49378720-49378739 None:intergenic 25.0%
! ATTTCTTAGAATTTGTGGTT+GGG - chr4.2:49376048-49376067 None:intergenic 25.0%
! CAAGATAATATTGATGTATG+TGG - chr4.2:49377044-49377063 None:intergenic 25.0%
! CAATGAAATGTATTTAAGTG+AGG + chr4.2:49378314-49378333 MS.gene067746:intron 25.0%
! GATACATAAATACTCAAAAG+TGG + chr4.2:49376798-49376817 MS.gene067746:intron 25.0%
! GTCTTTCATTTAGTAGAAAT+AGG - chr4.2:49378658-49378677 None:intergenic 25.0%
! GTGTAGTGTTTATAAAGAAT+GGG + chr4.2:49375980-49375999 MS.gene067746:intron 25.0%
! TATGATATGTAATCGGATAA+GGG + chr4.2:49377975-49377994 MS.gene067746:intron 25.0%
! TATTTCTTAGAATTTGTGGT+TGG - chr4.2:49376049-49376068 None:intergenic 25.0%
! TGAGTATTTATGTATCTTGT+TGG - chr4.2:49376794-49376813 None:intergenic 25.0%
! TGTAAAAATGGGATGATTAA+TGG - chr4.2:49377582-49377601 None:intergenic 25.0%
! TGTGTAGTGTTTATAAAGAA+TGG + chr4.2:49375979-49375998 MS.gene067746:intron 25.0%
!! AATGGTTAAAAAAGTGCATA+TGG + chr4.2:49375495-49375514 MS.gene067746:intron 25.0%
!! ATAAACTAAAGCATGTTTTG+AGG - chr4.2:49375201-49375220 None:intergenic 25.0%
!! ATCTAAAATGAAAATGCTTC+AGG - chr4.2:49378070-49378089 None:intergenic 25.0%
!! GTTATTTGAAATATTTGCAC+AGG - chr4.2:49375633-49375652 None:intergenic 25.0%
!!! AAACATGTTTTAGAAGGATT+TGG - chr4.2:49375581-49375600 None:intergenic 25.0%
!!! AAGAGAGATTTTTTAGCAAT+TGG + chr4.2:49378351-49378370 MS.gene067746:intron 25.0%
!!! AAGCTATTTCTTAGAATTTG+TGG - chr4.2:49376053-49376072 None:intergenic 25.0%
!!! ACTCTTTATCTTTTGAGAAA+TGG - chr4.2:49377612-49377631 None:intergenic 25.0%
!!! AGGTGTTTTATTTGTAATTG+GGG + chr4.2:49375428-49375447 MS.gene067746:intron 25.0%
!!! ATTCTTTTTCAATTGAACTG+CGG + chr4.2:49376493-49376512 MS.gene067746:intron 25.0%
!!! GAGGTGTTTTATTTGTAATT+GGG + chr4.2:49375427-49375446 MS.gene067746:intron 25.0%
!!! TATTTTAACTAGATGATGCT+TGG + chr4.2:49378276-49378295 MS.gene067746:intron 25.0%
!!! TGAGGTGTTTTATTTGTAAT+TGG + chr4.2:49375426-49375445 MS.gene067746:intron 25.0%
!!! TTAATCATCCCATTTTTACA+TGG + chr4.2:49377582-49377601 MS.gene067746:intron 25.0%
AACTATGTGTAGGATGATAT+TGG - chr4.2:49376568-49376587 None:intergenic 30.0%
AAGGCCACAATTAAGAAATT+AGG - chr4.2:49375892-49375911 None:intergenic 30.0%
AATTGTGATCTCTTAGTGTT+AGG + chr4.2:49377485-49377504 MS.gene067746:intron 30.0%
AATTTCTTAATTGTGGCCTT+TGG + chr4.2:49375892-49375911 MS.gene067746:intron 30.0%
ACACTAATACTCTAGCAATT+TGG + chr4.2:49378005-49378024 MS.gene067746:intron 30.0%
ACATGCTTGTATAAATACGA+AGG + chr4.2:49376244-49376263 MS.gene067746:intron 30.0%
ACTATGTGTAGGATGATATT+GGG - chr4.2:49376567-49376586 None:intergenic 30.0%
AGAGCATGAAATGTGATAAT+TGG - chr4.2:49378835-49378854 None:intergenic 30.0%
AGATAGAAAGAGAAGAGAAA+TGG - chr4.2:49378863-49378882 None:intergenic 30.0%
AGGCCACAATTAAGAAATTA+GGG - chr4.2:49375891-49375910 None:intergenic 30.0%
ATAAGTACCACCTGTTTATT+AGG + chr4.2:49377417-49377436 MS.gene067746:intron 30.0%
ATGAAATGTGATAATTGGTG+TGG - chr4.2:49378830-49378849 None:intergenic 30.0%
ATGATATGTAATCGGATAAG+GGG + chr4.2:49377976-49377995 MS.gene067746:intron 30.0%
ATGGCTAATATACTGGAATA+GGG + chr4.2:49375833-49375852 MS.gene067746:intron 30.0%
ATGTATTTGCCCAAACATAT+GGG + chr4.2:49377912-49377931 MS.gene067746:intron 30.0%
ATTTCTTAATTGTGGCCTTT+GGG + chr4.2:49375893-49375912 MS.gene067746:intron 30.0%
CACTTATGAGCTTAATACTT+TGG - chr4.2:49376079-49376098 None:intergenic 30.0%
CATACTACAAGAAATAACAG+TGG - chr4.2:49378913-49378932 None:intergenic 30.0%
CATTTAGTAGAAATAGGAAG+TGG - chr4.2:49378652-49378671 None:intergenic 30.0%
CTACTAAATGAAAGACTTGT+AGG + chr4.2:49378662-49378681 MS.gene067746:intron 30.0%
GATAATATTGATGTATGTGG+TGG - chr4.2:49377041-49377060 None:intergenic 30.0%
GATAGAAAGAGAAGAGAAAT+GGG - chr4.2:49378862-49378881 None:intergenic 30.0%
GATTTCCTTACAAAAACTAG+AGG + chr4.2:49377940-49377959 MS.gene067746:intron 30.0%
GCAACATCTATAAGTAATGT+GGG - chr4.2:49375958-49375977 None:intergenic 30.0%
TATGGCTAATATACTGGAAT+AGG + chr4.2:49375832-49375851 MS.gene067746:intron 30.0%
TATGTATTTGCCCAAACATA+TGG + chr4.2:49377911-49377930 MS.gene067746:intron 30.0%
TATTTAAGTGAGGTGACATA+AGG + chr4.2:49378324-49378343 MS.gene067746:intron 30.0%
TCAATCAGAAAACTATGTGT+AGG - chr4.2:49376578-49376597 None:intergenic 30.0%
TCAATTTCCTAATAAACAGG+TGG - chr4.2:49377427-49377446 None:intergenic 30.0%
TGAAGTTTGTACACAGTTAA+CGG + chr4.2:49377510-49377529 MS.gene067746:intron 30.0%
TTAGAAATTAGAAGAACCCA+AGG - chr4.2:49376105-49376124 None:intergenic 30.0%
TTTGGATATGGCTAATATAC+TGG + chr4.2:49375826-49375845 MS.gene067746:intron 30.0%
! AAGTTTCAAGTGACAAATAC+CGG + chr4.2:49379088-49379107 MS.gene067746:CDS 30.0%
! ATGTGACAAAAAGAAAGTGT+CGG - chr4.2:49378766-49378785 None:intergenic 30.0%
! CACATGACAAAAGCAAATTT+TGG - chr4.2:49378187-49378206 None:intergenic 30.0%
! TTTTTATCAGTTTTTGTGGC+TGG + chr4.2:49376602-49376621 MS.gene067746:intron 30.0%
!! AAATTTGCTTTTGTCATGTG+TGG + chr4.2:49378187-49378206 MS.gene067746:intron 30.0%
!! ACAAAAGCAAATTTTGGCAT+GGG - chr4.2:49378181-49378200 None:intergenic 30.0%
!! AGTTGAAAGTACTTAACCTT+TGG + chr4.2:49376526-49376545 MS.gene067746:intron 30.0%
!! GTTGAAAGTACTTAACCTTT+GGG + chr4.2:49376527-49376546 MS.gene067746:intron 30.0%
!! TCTGTTAGTTTGTTAGTTCA+CGG + chr4.2:49376157-49376176 MS.gene067746:intron 30.0%
!!! AGTATCCTCTAGTTTTTGTA+AGG - chr4.2:49377948-49377967 None:intergenic 30.0%
AAACCTCAAAAACGCTATAG+CGG + chr4.2:49376701-49376720 MS.gene067746:intron 35.0%
AAATCACTGACCCATATGTT+TGG - chr4.2:49377925-49377944 None:intergenic 35.0%
AAATGTGATAATTGGTGTGG+TGG - chr4.2:49378827-49378846 None:intergenic 35.0%
AATCACTGACCCATATGTTT+GGG - chr4.2:49377924-49377943 None:intergenic 35.0%
AATGGTCCTCCATGTAAAAA+TGG - chr4.2:49377594-49377613 None:intergenic 35.0%
ACAAGTGTGTGTTATACTTG+AGG + chr4.2:49375408-49375427 MS.gene067746:intron 35.0%
AGATTGCTATAGCATATAGC+AGG + chr4.2:49377140-49377159 MS.gene067746:intron 35.0%
AGTGACAAATACCGGAATTA+TGG + chr4.2:49379096-49379115 MS.gene067746:CDS 35.0%
AGTTGACGATAATCATGCTT+GGG - chr4.2:49378443-49378462 None:intergenic 35.0%
ATACATACCATTGCATGTTC+CGG + chr4.2:49375457-49375476 MS.gene067746:intron 35.0%
ATGGTCCTCCATGTAAAAAT+GGG - chr4.2:49377593-49377612 None:intergenic 35.0%
ATTGACATAGACACAGATAC+CGG - chr4.2:49375383-49375402 None:intergenic 35.0%
CACAATTAAGAAATTAGGGG+CGG - chr4.2:49375887-49375906 None:intergenic 35.0%
CATTAGAATGACAGAGAATC+CGG - chr4.2:49375479-49375498 None:intergenic 35.0%
GAGTTTGTCTACATCAGTTA+AGG + chr4.2:49376340-49376359 MS.gene067746:intron 35.0%
GGAACTTAGAATTGAAGATG+AGG - chr4.2:49377020-49377039 None:intergenic 35.0%
GGCAACATCTATAAGTAATG+TGG - chr4.2:49375959-49375978 None:intergenic 35.0%
GGCCACAATTAAGAAATTAG+GGG - chr4.2:49375890-49375909 None:intergenic 35.0%
GTGAACTAACAAACTAACAG+AGG - chr4.2:49376158-49376177 None:intergenic 35.0%
GTTAACAAATGACAACCCAA+AGG - chr4.2:49376545-49376564 None:intergenic 35.0%
TAAGGCCGCAAAAATTGTTA+TGG - chr4.2:49379136-49379155 None:intergenic 35.0%
TACTAAAGGCAGACACTTTA+TGG + chr4.2:49377350-49377369 MS.gene067746:intron 35.0%
TGAAATATTTGCACAGGCAA+TGG - chr4.2:49375627-49375646 None:intergenic 35.0%
TGATATGTAATCGGATAAGG+GGG + chr4.2:49377977-49377996 MS.gene067746:intron 35.0%
TTAACTAGATGATGCTTGGT+TGG + chr4.2:49378280-49378299 MS.gene067746:intron 35.0%
TTCATTGTGTTGGGTTTGAA+GGG + chr4.2:49375921-49375940 MS.gene067746:intron 35.0%
TTGGTGTGTTCACATGATAT+AGG + chr4.2:49377289-49377308 MS.gene067746:intron 35.0%
! AAAAGGTATATAACCCCCAA+AGG - chr4.2:49378531-49378550 None:intergenic 35.0%
! ATAACAATTTTTGCGGCCTT+AGG + chr4.2:49379135-49379154 MS.gene067746:CDS 35.0%
! CTATCTAGGATTAACAACAC+AGG - chr4.2:49376667-49376686 None:intergenic 35.0%
! GTGTTGTTAATCCTAGATAG+TGG + chr4.2:49376667-49376686 MS.gene067746:intron 35.0%
! TAAAAGTGTGTGATAGTTGC+AGG - chr4.2:49378886-49378905 None:intergenic 35.0%
! TGGCACCATAACAATTTTTG+CGG + chr4.2:49379128-49379147 MS.gene067746:CDS 35.0%
! TGGGGGTTATATACCTTTTA+AGG + chr4.2:49378532-49378551 MS.gene067746:intron 35.0%
! TTTTTGTACCAATGTACCCA+TGG - chr4.2:49377729-49377748 None:intergenic 35.0%
!! ATCATCCCATTTTTACATGG+AGG + chr4.2:49377585-49377604 MS.gene067746:intron 35.0%
!! GACAAAAGCAAATTTTGGCA+TGG - chr4.2:49378182-49378201 None:intergenic 35.0%
!! TGTGACAAAAAGAAAGTGTC+GGG - chr4.2:49378765-49378784 None:intergenic 35.0%
AAAACGCTATAGCGGTATAG+AGG + chr4.2:49376709-49376728 MS.gene067746:intron 40.0%
AAAATCATGCTTCCGCATCT+GGG + chr4.2:49376990-49377009 MS.gene067746:intron 40.0%
AACACGTTCTGCTATGGTTA+TGG + chr4.2:49378138-49378157 MS.gene067746:intron 40.0%
ACACAATGAAGACAACCCAA+AGG - chr4.2:49375911-49375930 None:intergenic 40.0%
AGTTCAAACACGTTCTGCTA+TGG + chr4.2:49378132-49378151 MS.gene067746:intron 40.0%
ATAGCGGTATAGAGGATTGT+GGG + chr4.2:49376717-49376736 MS.gene067746:intron 40.0%
ATGAAGTAGCATAGAGCCAT+GGG + chr4.2:49377710-49377729 MS.gene067746:intron 40.0%
CAGCAAGATTTGCATCTAGA+AGG + chr4.2:49375102-49375121 MS.gene067746:CDS 40.0%
CGCCCCTAATTTCTTAATTG+TGG + chr4.2:49375885-49375904 MS.gene067746:intron 40.0%
CGGATTCTCTGTCATTCTAA+TGG + chr4.2:49375477-49375496 MS.gene067746:intron 40.0%
CTTCATTGTGTTGGGTTTGA+AGG + chr4.2:49375920-49375939 MS.gene067746:intron 40.0%
GAGTTGACGATAATCATGCT+TGG - chr4.2:49378444-49378463 None:intergenic 40.0%
GATATGTAATCGGATAAGGG+GGG + chr4.2:49377978-49377997 MS.gene067746:intron 40.0%
GGCTGGAAAAATGATGAATC+AGG + chr4.2:49376619-49376638 MS.gene067746:intron 40.0%
TATAGCGGTATAGAGGATTG+TGG + chr4.2:49376716-49376735 MS.gene067746:intron 40.0%
TATGAAGTAGCATAGAGCCA+TGG + chr4.2:49377709-49377728 MS.gene067746:intron 40.0%
TCATTGTGTTGGGTTTGAAG+GGG + chr4.2:49375922-49375941 MS.gene067746:intron 40.0%
TCTAGAAGGCTATTTAGCAG+TGG + chr4.2:49375116-49375135 MS.gene067746:CDS 40.0%
TCTGGACATTCTGATACATC+AGG + chr4.2:49379060-49379079 MS.gene067746:CDS 40.0%
TGAGCAGCAATCTACTTTCT+AGG - chr4.2:49376212-49376231 None:intergenic 40.0%
TGAGCTGTATGTATGATCTC+TGG + chr4.2:49375527-49375546 MS.gene067746:intron 40.0%
TGCGGAAAATGCTTACTTCA+AGG + chr4.2:49375172-49375191 MS.gene067746:CDS 40.0%
TGGGTTGTCTTCATTGTGTT+GGG + chr4.2:49375912-49375931 MS.gene067746:intron 40.0%
! AAGCTCATAAGTGTTGCCTT+GGG + chr4.2:49376086-49376105 MS.gene067746:intron 40.0%
! AGCAGTGCTATTGACTACAT+TGG + chr4.2:49377270-49377289 MS.gene067746:intron 40.0%
! ATACCGCTATAGCGTTTTTG+AGG - chr4.2:49376707-49376726 None:intergenic 40.0%
! TAAGCTCATAAGTGTTGCCT+TGG + chr4.2:49376085-49376104 MS.gene067746:intron 40.0%
! TCGTAATTGCTATCGGTTGA+AGG + chr4.2:49375251-49375270 MS.gene067746:intron 40.0%
! TTGGGTTGTCTTCATTGTGT+TGG + chr4.2:49375911-49375930 MS.gene067746:intron 40.0%
!!! GCTATAGCGTTTTTGAGGTT+TGG - chr4.2:49376702-49376721 None:intergenic 40.0%
AAATCATGCTTCCGCATCTG+GGG + chr4.2:49376991-49377010 MS.gene067746:intron 45.0%
AAATGGAGATGAGGAGTTGG+AGG - chr4.2:49377100-49377119 None:intergenic 45.0%
AACCACTCTCCTTTGACTGT+TGG + chr4.2:49378473-49378492 MS.gene067746:intron 45.0%
AGAGAATCCGGAACATGCAA+TGG - chr4.2:49375467-49375486 None:intergenic 45.0%
AGCAGAACGTGTTTGAACTG+TGG - chr4.2:49378131-49378150 None:intergenic 45.0%
AGGTATATAACCCCCAAAGG+TGG - chr4.2:49378528-49378547 None:intergenic 45.0%
CAAAATCATGCTTCCGCATC+TGG + chr4.2:49376989-49377008 MS.gene067746:intron 45.0%
CAGCAATCTACTTTCTAGGC+AGG - chr4.2:49376208-49376227 None:intergenic 45.0%
CAGCTACGACTCCATAATTC+CGG - chr4.2:49379110-49379129 None:intergenic 45.0%
CTAACACAGCCCTACAAAAC+CGG - chr4.2:49376024-49376043 None:intergenic 45.0%
CTGCAAGTTCCAACAGTCAA+AGG - chr4.2:49378485-49378504 None:intergenic 45.0%
CTGGACATGCCTTTGATTAG+AGG - chr4.2:49375290-49375309 None:intergenic 45.0%
GAAAGCTGAGCAAGAGAAGT+TGG + chr4.2:49376413-49376432 MS.gene067746:intron 45.0%
GCTTCTTTGCAGTGCCTTTA+AGG - chr4.2:49379167-49379186 None:intergenic 45.0%
GTAAGCACCACAAATGCAAC+CGG - chr4.2:49376376-49376395 None:intergenic 45.0%
GTCCAGTGTTCAACATGTGT+CGG + chr4.2:49375304-49375323 MS.gene067746:intron 45.0%
GTCCTGACACCTCTAATCAA+AGG + chr4.2:49375278-49375297 MS.gene067746:intron 45.0%
TCCAACTCCTCATCTCCATT+TGG + chr4.2:49377099-49377118 MS.gene067746:intron 45.0%
TTCAGCAGTGACAGTTGTCA+CGG - chr4.2:49377183-49377202 None:intergenic 45.0%
TTCCAACAGTCAAAGGAGAG+TGG - chr4.2:49378478-49378497 None:intergenic 45.0%
TTTCTCCTCAACATGCACAG+AGG - chr4.2:49375714-49375733 None:intergenic 45.0%
! CAATTTTTGCGGCCTTAGGT+TGG + chr4.2:49379139-49379158 MS.gene067746:CDS 45.0%
!! ACCTTACAAGCCGGTTTTGT+AGG + chr4.2:49376011-49376030 MS.gene067746:intron 45.0%
!! CCTTACAAGCCGGTTTTGTA+GGG + chr4.2:49376012-49376031 MS.gene067746:intron 45.0%
!! GCCTTAGGTTGGTACCTTAA+AGG + chr4.2:49379150-49379169 MS.gene067746:CDS 45.0%
!! GCCTTTAAGGTACCAACCTA+AGG - chr4.2:49379154-49379173 None:intergenic 45.0%
!! TGCCTTTGATTAGAGGTGTC+AGG - chr4.2:49375283-49375302 None:intergenic 45.0%
!!! AATAACAATATTTTTTAAAA+AGG + chr4.2:49375647-49375666 MS.gene067746:intron 5.0%
ACAACTGTCACTGCTGAAGG+TGG + chr4.2:49377185-49377204 MS.gene067746:intron 50.0%
ACTGTGGAATAGGATGGCAG+TGG - chr4.2:49377243-49377262 None:intergenic 50.0%
AGCTGTGCCAAATGGAGATG+AGG - chr4.2:49377109-49377128 None:intergenic 50.0%
AGGCTATTTAGCAGTGGCTC+TGG + chr4.2:49375122-49375141 MS.gene067746:CDS 50.0%
ATGTCCAGAGCCACTTGGTT+TGG - chr4.2:49379049-49379068 None:intergenic 50.0%
CACCGACACATGTTGAACAC+TGG - chr4.2:49375309-49375328 None:intergenic 50.0%
CAGTTAAGGTCTGTGCTTGC+CGG + chr4.2:49376354-49376373 MS.gene067746:intron 50.0%
CCCAAAGGTGGCGAAGAAAA+GGG - chr4.2:49378516-49378535 None:intergenic 50.0%
CGGAATTATGGAGTCGTAGC+TGG + chr4.2:49379108-49379127 MS.gene067746:CDS 50.0%
GCAATCCTCACCTTACAAGC+CGG + chr4.2:49376002-49376021 MS.gene067746:intron 50.0%
GCATAGAGCCATGGGTACAT+TGG + chr4.2:49377718-49377737 MS.gene067746:intron 50.0%
GCCAAATGGAGATGAGGAGT+TGG - chr4.2:49377103-49377122 None:intergenic 50.0%
GCTATAGCGCACTGTGGAAT+AGG - chr4.2:49377253-49377272 None:intergenic 50.0%
GGAATAGGATGGCAGTGGTA+GGG - chr4.2:49377238-49377257 None:intergenic 50.0%
GGCTATTTAGCAGTGGCTCT+GGG + chr4.2:49375123-49375142 MS.gene067746:CDS 50.0%
GTAACCGATGCCAAACCAAG+TGG + chr4.2:49379036-49379055 MS.gene067746:CDS 50.0%
GTCACTACAGCTGTGCCAAA+TGG - chr4.2:49377117-49377136 None:intergenic 50.0%
GTGACAACTGTCACTGCTGA+AGG + chr4.2:49377182-49377201 MS.gene067746:intron 50.0%
GTGGAGCTTGCATAACTTCG+TGG + chr4.2:49378206-49378225 MS.gene067746:intron 50.0%
GTTGTCACGGCTGCAAATTG+CGG - chr4.2:49377170-49377189 None:intergenic 50.0%
TAGCGCACTGTGGAATAGGA+TGG - chr4.2:49377249-49377268 None:intergenic 50.0%
TCAGAATGTCCAGAGCCACT+TGG - chr4.2:49379054-49379073 None:intergenic 50.0%
TGCATCCTCTGTGCATGTTG+AGG + chr4.2:49375706-49375725 MS.gene067746:intron 50.0%
TGGAATAGGATGGCAGTGGT+AGG - chr4.2:49377239-49377258 None:intergenic 50.0%
TGGGAAAGTTCTTGGTGAGG+AGG + chr4.2:49375142-49375161 MS.gene067746:CDS 50.0%
TGGTGAGGAGGAAAAAGCTG+CGG + chr4.2:49375154-49375173 MS.gene067746:CDS 50.0%
TTGTGTTGGGTTTGAAGGGG+TGG + chr4.2:49375925-49375944 MS.gene067746:intron 50.0%
! CCCTTTTCTTCGCCACCTTT+GGG + chr4.2:49378513-49378532 MS.gene067746:intron 50.0%
! CCTTTTCTTCGCCACCTTTG+GGG + chr4.2:49378514-49378533 MS.gene067746:intron 50.0%
! CTCTGGGAAAGTTCTTGGTG+AGG + chr4.2:49375139-49375158 MS.gene067746:CDS 50.0%
! CTTTTCTTCGCCACCTTTGG+GGG + chr4.2:49378515-49378534 MS.gene067746:intron 50.0%
! TCCCTTTTCTTCGCCACCTT+TGG + chr4.2:49378512-49378531 MS.gene067746:intron 50.0%
! TGCAAAGAAGCCAGAAGTGC+AGG + chr4.2:49379176-49379195 MS.gene067746:CDS 50.0%
!! AGAGCCACTTGGTTTGGCAT+CGG - chr4.2:49379043-49379062 None:intergenic 50.0%
!! AGTGGCTCTGGGAAAGTTCT+TGG + chr4.2:49375134-49375153 MS.gene067746:CDS 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - chr4.2:49376010-49376029 None:intergenic 50.0%
!! CCCTACAAAACCGGCTTGTA+AGG - chr4.2:49376015-49376034 None:intergenic 50.0%
!! CGGTTTTGTAGGGCTGTGTT+AGG + chr4.2:49376022-49376041 MS.gene067746:intron 50.0%
ACTGCTGAAGGTGGCTCACA+GGG + chr4.2:49377194-49377213 MS.gene067746:intron 55.0%
AGCACTGCTATAGCGCACTG+TGG - chr4.2:49377259-49377278 None:intergenic 55.0%
AGGATGGCAGTGGTAGGGTT+TGG - chr4.2:49377233-49377252 None:intergenic 55.0%
ATCAGACCAGACTGCAGCTG+AGG - chr4.2:49377540-49377559 None:intergenic 55.0%
CATGCACAGAGGATGCAGAG+TGG - chr4.2:49375703-49375722 None:intergenic 55.0%
CCCCAAAGGTGGCGAAGAAA+AGG - chr4.2:49378517-49378536 None:intergenic 55.0%
GATGCCAAACCAAGTGGCTC+TGG + chr4.2:49379042-49379061 MS.gene067746:CDS 55.0%
GGCGCTATGCACCACTATCT+AGG - chr4.2:49376681-49376700 None:intergenic 55.0%
TCAGACCAGACTGCAGCTGA+GGG - chr4.2:49377539-49377558 None:intergenic 55.0%
TGGAGATGAGGAGTTGGAGG+TGG - chr4.2:49377097-49377116 None:intergenic 55.0%
! GTGCTTGCCGGTTGCATTTG+TGG + chr4.2:49376366-49376385 MS.gene067746:intron 55.0%
! GTTGGAGAAGCTTGCTCGCA+AGG + chr4.2:49376431-49376450 MS.gene067746:CDS 55.0%
!! GCTGGTGTTGCTTCTGGTTG+AGG - chr4.2:49378997-49379016 None:intergenic 55.0%
ACACCAGCTGCAGGTTCAGG+TGG + chr4.2:49379009-49379028 MS.gene067746:CDS 60.0%
AGATGAGGCAGCCCCAGATG+CGG - chr4.2:49377005-49377024 None:intergenic 60.0%
CACTGCTGAAGGTGGCTCAC+AGG + chr4.2:49377193-49377212 MS.gene067746:intron 60.0%
CCAGAAGCAACACCAGCTGC+AGG + chr4.2:49379000-49379019 MS.gene067746:CDS 60.0%
GAACCACCTGAACCTGCAGC+TGG - chr4.2:49379015-49379034 None:intergenic 60.0%
GAAGGTGGCTCACAGGGAGA+TGG + chr4.2:49377200-49377219 MS.gene067746:intron 60.0%
GCAACACCAGCTGCAGGTTC+AGG + chr4.2:49379006-49379025 MS.gene067746:CDS 60.0%
!! CCTGCAGCTGGTGTTGCTTC+TGG - chr4.2:49379003-49379022 None:intergenic 60.0%
GGATGCCCTCAGCTGCAGTC+TGG + chr4.2:49377531-49377550 MS.gene067746:intron 65.0%
GGCAGTGGTAGGGTTTGGCG+CGG - chr4.2:49377228-49377247 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 49375086 49379206 49375086 ID=MS.gene067746
chr4.2 mRNA 49375086 49379206 49375086 ID=MS.gene067746.t1;Parent=MS.gene067746
chr4.2 exon 49375086 49375193 49375086 ID=MS.gene067746.t1.exon1;Parent=MS.gene067746.t1
chr4.2 CDS 49375086 49375193 49375086 ID=cds.MS.gene067746.t1;Parent=MS.gene067746.t1
chr4.2 exon 49376414 49376452 49376414 ID=MS.gene067746.t1.exon2;Parent=MS.gene067746.t1
chr4.2 CDS 49376414 49376452 49376414 ID=cds.MS.gene067746.t1;Parent=MS.gene067746.t1
chr4.2 exon 49378991 49379206 49378991 ID=MS.gene067746.t1.exon3;Parent=MS.gene067746.t1
chr4.2 CDS 49378991 49379206 49378991 ID=cds.MS.gene067746.t1;Parent=MS.gene067746.t1
Gene Sequence

>MS.gene067746

ATGGCAACACGGGTGGCAGCAAGATTTGCATCTAGAAGGCTATTTAGCAGTGGCTCTGGGAAAGTTCTTGGTGAGGAGGAAAAAGCTGCGGAAAATGCTTACTTCAAGGTAACCTCAAAACATGCTTTAGTTTATTCTTGCTTCGTTCTGTTTAGTTTTTTATTTTCGTAATTGCTATCGGTTGAAGGTTTAGTCCTGACACCTCTAATCAAAGGCATGTCCAGTGTTCAACATGTGTCGGTGTCTGATTACATTCAATTAACTAATTTTCTCGAATTATTATTAGTGTTGTGTCCGGTATCTGTGTCTATGTCAATGATTCACAAGTGTGTGTTATACTTGAGGTGTTTTATTTGTAATTGGGGACATACATACATACCATTGCATGTTCCGGATTCTCTGTCATTCTAATGGTTAAAAAAGTGCATATGGAGTATGAACTGAGCTGTATGTATGATCTCTGGTATGATAATGCAGTCAGAGCGTAATTTTCCAAATCCTTCTAAAACATGTTTAAAATCTTTGTTGAAAATCGATACCATTGCCTGTGCAAATATTTCAAATAACAATATTTTTTAAAAAGGAAATGTCATGGTCAGTTATTTTAGCATAGACCACTCTGCATCCTCTGTGCATGTTGAGGAGAAATTAAAATCATACTTCCTTTTTAATGCAGTTTTTTTTTTTTGACGAATCTTTTTGATGCAGTTAAATTTTTGATTTATTTCAAATGATTTCATTTTGGATATGGCTAATATACTGGAATAGGGTAAACAGTGTTGCTGTCTTCATTGCAGTCCGCCCCTAATTTCTTAATTGTGGCCTTTGGGTTGTCTTCATTGTGTTGGGTTTGAAGGGGTGGATTTAGTCCCACATTACTTATAGATGTTGCCTGTGTAGTGTTTATAAAGAATGGGCAATCCTCACCTTACAAGCCGGTTTTGTAGGGCTGTGTTAGGCCCAACCACAAATTCTAAGAAATAGCTTTAGCCAAAGTATTAAGCTCATAAGTGTTGCCTTGGGTTCTTCTAATTTCTAACAAAAGGATACAATGATTTGTTCACTTTCATGTCTGTTAGTTTGTTAGTTCACGGCCTCTGTTAGTTTGTTAGTTCACGGCCTGCCTAGAAAGTAGATTGCTGCTCAACAAATTAACGTACATGCTTGTATAAATACGAAGGTTAAGAGTATTGATCTATATCTTTTGCTAATTAACTCAATCGTTGTAGAGAAATATTTTAGCTTAATTTTGTAGAGTTTGTCTACATCAGTTAAGGTCTGTGCTTGCCGGTTGCATTTGTGGTGCTTACTTATTTTCTATATTGCAGAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGGTATGTCGTTAAATTTCATCTCTTATTCTTTTAATCTTTTATTCTTTTTCAATTGAACTGCGGTATATGATGAAGTTGAAAGTACTTAACCTTTGGGTTGTCATTTGTTAACCCAATATCATCCTACACATAGTTTTCTGATTGAGAAATTTTTATCAGTTTTTGTGGCTGGAAAAATGATGAATCAGGAGCATTATCTGCTTTGTTTGTTCCTGTGTTGTTAATCCTAGATAGTGGTGCATAGCGCCAAACCTCAAAAACGCTATAGCGGTATAGAGGATTGTGGGATGACTATTTTTGTGAAAACTAAAAAAAAATGTACAAAGTAAGCATAAATTCCAACAAGATACATAAATACTCAAAAGTGGAAAAATAGGTAAAATTAAAGGGACAGTCATAATAATTATAATCAAATTTGTCATTCCCATCAAATAAGTACTAAATGTAATCAAAATGATATAGTATTCAGAATGACAAAATCAAGTCTTAAAAGTAAACAAAATGACAAACCATTAAAATCAAGTTCTAAAAGTAATCAAAATCATGCTTCCGCATCTGGGGCTGCCTCATCTTCAATTCTAAGTTCCACCACATACATCAATATTATCTTGTTCATCACTTGGATTCAAACTTCTGTTCTTCCACCTCCAACTCCTCATCTCCATTTGGCACAGCTGTAGTGACTCTAGATTGCTATAGCATATAGCAGGATGACCGCAATTTGCAGCCGTGACAACTGTCACTGCTGAAGGTGGCTCACAGGGAGATGGCGCCGCGCCAAACCCTACCACTGCCATCCTATTCCACAGTGCGCTATAGCAGTGCTATTGACTACATTGGTGTGTTCACATGATATAGGAATTACTCATTTACCCATTTAAATCCCAAAAAAAAAAATACTAAAGGCAGACACTTTATGGCTAACTAGTGCAAATTTGTAACTTGAACTATAATGCAGAAAAAGATAAGTACCACCTGTTTATTAGGAAATTGAAATTGTGCATATAGTTGTGCATATAGTAAATTCACATTAATTGTGATCTCTTAGTGTTAGGAATGAAGTTTGTACACAGTTAACGGATGCCCTCAGCTGCAGTCTGGTCTGATGATATAACAAGCAGATTTACCATTAATCATCCCATTTTTACATGGAGGACCATTTCTCAAAAGATAAAGAGTGATAATATGAATGTTTGTTGACTATGAAGCCCACATACTTATACTTAATATGATACAAGATAGATATGGGTTGAAGATATGAAGTAGCATAGAGCCATGGGTACATTGGTACAAAAAAAAAATGATGATTGACATCAATATGTCTGATTAAGACATAACTTATCCATAAATGATGATTATAATTTACAAAAAAAAAAATACTTGTGATCATGCTGAACACGTATTTTTCCCCTGTACATATTAAAATATATTATTTCCCTATAAAGATATCATGCAAATTATGTATTTGCCCAAACATATGGGTCAGTGATTTCCTTACAAAAACTAGAGGATACTCTTTTGATATGATATGTAATCGGATAAGGGGGGTCTAACACTAATACTCTAGCAATTTGGAAGTATCTTGAATTCATATTTTGCTGACTACTTGACTATCCTGAAGCATTTTCATTTTAGATGTTAATATACTGTCTGTATATTCAGAAATACATGCTTACCACAGTTCAAACACGTTCTGCTATGGTTATGGAACTTGATTACAGTATGCCCATGCCAAAATTTGCTTTTGTCATGTGTGGAGCTTGCATAACTTCGTGGATAATTTAGATTGTTGTACTAATGAGATTCTTTCTCAATAACCATGTTATTTTAACTAGATGATGCTTGGTTGGCATGAAGTGATCAATGAAATGTATTTAAGTGAGGTGACATAAGGTGAAAAGAGAGATTTTTTAGCAATTGGTGCTGATAAAATATAAACTTGAAAAAATGGCAATTGACAAAACATTAAAGTCGTATTATTATTTTTCCCAAGCATGATTATCGTCAACTCACATAACATAACCACTCTCCTTTGACTGTTGGAACTTGCAGTTTCAATTCCCTTTTCTTCGCCACCTTTGGGGGTTATATACCTTTTAAGGTTATAATAAAACGAAAGTCGTTTGCATTTTAATTATACTTACAACTTTTAACTAAAGGACCAAATAATTAGCAATTTTATTTCTTTATATTCTGCCACTTCCTATTTCTACTAAATGAAAGACTTGTAGGTTTTTTCTATTGAGAGTTACTTGTATAAGACTCCGTTTCTCTAACTTATGTCAATAAACTGTTGTTCTGATTTATATCCCGACACTTTCTTTTTGTCACATAACTTTTTCATCTATCTTTTTTTCTCTCTCTCTTTTTTCCACCACACCAATTATCACATTTCATGCTCTCACTCCCATTTCTCTTCTCTTTCTATCTCCTGCAACTATCACACACTTTTATTTTCCACTGTTATTTCTTGTAGTATGCATTGTCTGTTGATGTCATGCCTTGAACTTAATGTTAAGCATTTATGTTCTAATGTAGGGTCCTCAACCAGAAGCAACACCAGCTGCAGGTTCAGGTGGTTCAGTAACCGATGCCAAACCAAGTGGCTCTGGACATTCTGATACATCAGGTCCCAAAGTTTCAAGTGACAAATACCGGAATTATGGAGTCGTAGCTGGCACCATAACAATTTTTGCGGCCTTAGGTTGGTACCTTAAAGGCACTGCAAAGAAGCCAGAAGTGCAGGAAGACTGA

Protein sequence

>MS.gene067746.t1

MATRVAARFASRRLFSSGSGKVLGEEEKAAENAYFKKAEQEKLEKLARKGPQPEATPAAGSGGSVTDAKPSGSGHSDTSGPKVSSDKYRNYGVVAGTITIFAALGWYLKGTAKKPEVQED