Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072146.t1 | XP_024629011.1 | 100 | 480 | 0 | 0 | 45 | 524 | 1 | 480 | 7.40E-277 | 962.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072146.t1 | Q949Y0 | 76.4 | 483 | 110 | 2 | 45 | 524 | 1 | 482 | 4.5e-214 | 745.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072146.t1 | A0A396GGA4 | 100.0 | 480 | 0 | 0 | 45 | 524 | 1 | 480 | 5.4e-277 | 962.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene062770 | MS.gene072146 | PPI |
| MS.gene072146 | MS.gene049599 | PPI |
| MS.gene007189 | MS.gene072146 | PPI |
| MS.gene057206 | MS.gene072146 | PPI |
| MS.gene072146 | MS.gene002648 | PPI |
| MS.gene072146 | MS.gene53875 | PPI |
| MS.gene072146 | MS.gene24253 | PPI |
| MS.gene29256 | MS.gene072146 | PPI |
| MS.gene072146 | MS.gene056896 | PPI |
| MS.gene072146 | MS.gene050290 | PPI |
| MS.gene072146 | MS.gene050252 | PPI |
| MS.gene072146 | MS.gene004328 | PPI |
| MS.gene072146 | MS.gene05119 | PPI |
| MS.gene67099 | MS.gene072146 | PPI |
| MS.gene24255 | MS.gene072146 | PPI |
| MS.gene013534 | MS.gene072146 | PPI |
| MS.gene072146 | MS.gene81765 | PPI |
| MS.gene072146 | MS.gene06859 | PPI |
| MS.gene008431 | MS.gene072146 | PPI |
| MS.gene072146 | MS.gene26985 | PPI |
| MS.gene24706 | MS.gene072146 | PPI |
| MS.gene072146 | MS.gene24252 | PPI |
| MS.gene06645 | MS.gene072146 | PPI |
| MS.gene072146 | MS.gene24375 | PPI |
| MS.gene072146 | MS.gene27289 | PPI |
| MS.gene27247 | MS.gene072146 | PPI |
| MS.gene072146 | MS.gene034846 | PPI |
| MS.gene90698 | MS.gene072146 | PPI |
| MS.gene044013 | MS.gene072146 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072146.t1 | MTR_8g015660 | 100.000 | 477 | 0 | 0 | 48 | 524 | 78 | 554 | 0.0 | 999 |
| MS.gene072146.t1 | MTR_3g100480 | 27.572 | 243 | 152 | 8 | 149 | 379 | 585 | 815 | 7.89e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072146.t1 | AT1G51710 | 76.398 | 483 | 110 | 2 | 45 | 524 | 1 | 482 | 0.0 | 750 |
| MS.gene072146.t1 | AT3G21280 | 75.676 | 481 | 114 | 3 | 44 | 524 | 55 | 532 | 0.0 | 744 |
| MS.gene072146.t1 | AT3G21280 | 75.417 | 480 | 115 | 3 | 45 | 524 | 1 | 477 | 0.0 | 741 |
| MS.gene072146.t1 | AT1G51710 | 76.037 | 434 | 100 | 2 | 94 | 524 | 11 | 443 | 0.0 | 671 |
Find 109 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCTTCCACCATGATTAA+TGG | 0.190178 | 8.1:-81920723 | MS.gene072146:intron |
| ATCAAAGCCGACTTCAATTC+TGG | 0.197702 | 8.1:+81918396 | None:intergenic |
| CTGTGGCACCTATGCAATTT+TGG | 0.236161 | 8.1:-81918175 | MS.gene072146:CDS |
| GGAAAAGGCTTCTGCTGCTT+TGG | 0.253240 | 8.1:-81914197 | MS.gene072146:CDS |
| CTCGCAAAATCTTAGCCTTT+TGG | 0.261860 | 8.1:+81913037 | None:intergenic |
| TCATCTTGAACTCTAGGTTT+TGG | 0.265590 | 8.1:+81911216 | None:intergenic |
| TTCAGTTTGTCCGTTTCTTT+TGG | 0.281449 | 8.1:-81913074 | MS.gene072146:CDS |
| GTTATCAGTTACTCACATTC+AGG | 0.296836 | 8.1:-81918284 | MS.gene072146:intron |
| AGCTTTCTTCATTGCTCTCT+TGG | 0.309856 | 8.1:+81915506 | None:intergenic |
| AGTTGAGAAGAGGTTGTTCT+TGG | 0.329025 | 8.1:+81920782 | None:intergenic |
| GAAAAGGCTTCTGCTGCTTT+GGG | 0.331458 | 8.1:-81914196 | MS.gene072146:CDS |
| TCCTGAAAGACAAAAGATTA+TGG | 0.342483 | 8.1:-81919715 | MS.gene072146:CDS |
| GCAGCTACTTGTTCTTCTTC+AGG | 0.354152 | 8.1:+81919311 | None:intergenic |
| ATCTATAAGTGCGTGTGGTT+TGG | 0.354701 | 8.1:-81920835 | MS.gene072146:CDS |
| ATTCAGGACATTATGTTGGC+TGG | 0.356023 | 8.1:-81911368 | MS.gene072146:CDS |
| AAACCACACGCACTTATAGA+TGG | 0.358049 | 8.1:+81920837 | None:intergenic |
| ATCATCTGTGTTTAGGTGAT+TGG | 0.361081 | 8.1:-81910939 | MS.gene072146:intron |
| GATGACATCACTAGACTATC+TGG | 0.373755 | 8.1:-81911198 | MS.gene072146:CDS |
| GTTACTTGTTGGCAGGGAAA+TGG | 0.387441 | 8.1:-81911260 | MS.gene072146:intron |
| AACAAAGTGGATACCTTTCT+AGG | 0.395937 | 8.1:+81912831 | None:intergenic |
| CAATTTGGCCAGCTGCATAA+TGG | 0.409917 | 8.1:-81917028 | MS.gene072146:CDS |
| AATGACTGGGGTTTATGATT+TGG | 0.412670 | 8.1:-81911424 | MS.gene072146:CDS |
| GATGCTGATTGGGCAAAGTT+AGG | 0.423425 | 8.1:-81919517 | MS.gene072146:CDS |
| TTAATTTAGGGGTCATCAAA+TGG | 0.428623 | 8.1:-81911596 | MS.gene072146:intron |
| AAGAGAATAATAACCTTGGC+AGG | 0.430651 | 8.1:+81914134 | None:intergenic |
| GGGTCAAAAGCTAATGATGA+TGG | 0.432476 | 8.1:-81919393 | MS.gene072146:CDS |
| TAATGGAGTGTTCATGCAAC+AGG | 0.437555 | 8.1:-81917011 | MS.gene072146:intron |
| TTTAAAATCAGAGTTGGAAA+AGG | 0.450330 | 8.1:-81914212 | MS.gene072146:CDS |
| GTGATGTCATCTTGAACTCT+AGG | 0.451199 | 8.1:+81911210 | None:intergenic |
| CTCTAAGATCCCCTGGATCT+AGG | 0.452923 | 8.1:-81916854 | MS.gene072146:intron |
| CAATGCAGGATGATGCTGAT+TGG | 0.460308 | 8.1:-81919528 | MS.gene072146:intron |
| TCTGCATTTGCCAGGTATTG+AGG | 0.461481 | 8.1:-81917063 | MS.gene072146:intron |
| CTCCAGTCAGATCAAACAAT+TGG | 0.463837 | 8.1:+81919742 | None:intergenic |
| GGTTGTTCTTGGCTTGAAGA+AGG | 0.464254 | 8.1:+81920793 | None:intergenic |
| GAAGAAAGTTACCTAGATCC+AGG | 0.470982 | 8.1:+81916843 | None:intergenic |
| AAGGGTAGGAGTGCTGATTC+AGG | 0.475040 | 8.1:-81911384 | MS.gene072146:CDS |
| GGAGCCATCTGTTGCTCCAA+TGG | 0.476196 | 8.1:-81911567 | MS.gene072146:CDS |
| AACAGGATGCTGAAGAATGC+TGG | 0.479110 | 8.1:-81916905 | MS.gene072146:intron |
| ATCAGCACTCCTACCCTTGT+GGG | 0.484437 | 8.1:+81911389 | None:intergenic |
| GCAGGGTTTAAAATCAGAGT+TGG | 0.484857 | 8.1:-81914218 | MS.gene072146:intron |
| ATTCCCTCTTCCAAAAGAAA+CGG | 0.501115 | 8.1:+81913064 | None:intergenic |
| GTGTTTAGGTGATTGGCATA+TGG | 0.504677 | 8.1:-81910932 | MS.gene072146:intron |
| TCAAAGCCGACTTCAATTCT+GGG | 0.506445 | 8.1:+81918397 | None:intergenic |
| TCACAATCTCTAAGATCCCC+TGG | 0.506632 | 8.1:-81916861 | MS.gene072146:CDS |
| TTTCTGCAGTGAGTGTTAAG+TGG | 0.507754 | 8.1:-81919827 | MS.gene072146:intron |
| AGAAATCGAACCATTAATCA+TGG | 0.509118 | 8.1:+81920713 | None:intergenic |
| GTTGTTCTTGGCTTGAAGAA+GGG | 0.509936 | 8.1:+81920794 | None:intergenic |
| GAAATTAGAAGCTCCTAGAA+AGG | 0.510977 | 8.1:-81912844 | MS.gene072146:intron |
| AATGCAGGATGATGCTGATT+GGG | 0.515628 | 8.1:-81919527 | MS.gene072146:intron |
| TTGTTCTTGGCTTGAAGAAG+GGG | 0.518818 | 8.1:+81920795 | None:intergenic |
| TTCAGGACATTATGTTGGCT+GGG | 0.518824 | 8.1:-81911367 | MS.gene072146:CDS |
| GAGTGAGAAAAGTTGAGAAG+AGG | 0.520392 | 8.1:+81920772 | None:intergenic |
| TGCCAATTGTTTGATCTGAC+TGG | 0.522079 | 8.1:-81919744 | MS.gene072146:CDS |
| AATCAGCACTCCTACCCTTG+TGG | 0.523852 | 8.1:+81911388 | None:intergenic |
| GGTTTACCTCCTGCGATATG+TGG | 0.524877 | 8.1:+81915452 | None:intergenic |
| TTGGCATAGAACTTAATAGC+AGG | 0.531618 | 8.1:-81916509 | MS.gene072146:intron |
| GTGGGACAGGGACATACTGC+TGG | 0.532272 | 8.1:-81918480 | MS.gene072146:intron |
| AAGACAAAAGATTATGGTCA+AGG | 0.535017 | 8.1:-81919709 | MS.gene072146:CDS |
| AGTAGATTATCCTCTGGAGT+TGG | 0.535111 | 8.1:-81912901 | MS.gene072146:CDS |
| TGATAAAAGTGTCAAGGCTG+TGG | 0.537101 | 8.1:-81918192 | MS.gene072146:CDS |
| ACTTCAATTCTGGGACAGAA+TGG | 0.537272 | 8.1:+81918406 | None:intergenic |
| GAAGAGGGAATCAAACCAAA+AGG | 0.537832 | 8.1:-81913052 | MS.gene072146:CDS |
| TGAAAATACTGATGCTGTGA+AGG | 0.539297 | 8.1:-81916538 | MS.gene072146:CDS |
| TGAACACTCCATTATGCAGC+TGG | 0.540413 | 8.1:+81917020 | None:intergenic |
| AGTGAGTGTTAAGTGGCAAA+AGG | 0.543381 | 8.1:-81919820 | MS.gene072146:CDS |
| TCCTCCATTGGAGCAACAGA+TGG | 0.547369 | 8.1:+81911563 | None:intergenic |
| ATTATGAAATCTCCAGAGAA+GGG | 0.549279 | 8.1:-81919356 | MS.gene072146:CDS |
| TTATGCAGCTGGCCAAATTG+AGG | 0.549295 | 8.1:+81917031 | None:intergenic |
| TAGGGGTCATCAAATGGAGG+AGG | 0.557464 | 8.1:-81911590 | MS.gene072146:CDS |
| ACTTAAATGCCACATATCGC+AGG | 0.558324 | 8.1:-81915461 | MS.gene072146:CDS |
| AAGAAAGTTACCTAGATCCA+GGG | 0.559913 | 8.1:+81916844 | None:intergenic |
| CGCGCATCAATGCCCTGCCA+AGG | 0.566093 | 8.1:-81914147 | MS.gene072146:intron |
| AATTATGAAATCTCCAGAGA+AGG | 0.574663 | 8.1:-81919357 | MS.gene072146:CDS |
| GGCATATATAATCATGTACA+AGG | 0.580839 | 8.1:-81910911 | MS.gene072146:CDS |
| AACCACACGCACTTATAGAT+GGG | 0.581923 | 8.1:+81920838 | None:intergenic |
| TCAGAAAGTAGATTATCCTC+TGG | 0.583259 | 8.1:-81912907 | MS.gene072146:intron |
| GAATAAGTCACGGGTTGCAA+CGG | 0.585557 | 8.1:+81918223 | None:intergenic |
| TGAGAAAAGCTCTGTTCCCA+AGG | 0.585888 | 8.1:-81912668 | MS.gene072146:CDS |
| TATACCATCCAAAATTGCAT+AGG | 0.592018 | 8.1:+81918167 | None:intergenic |
| AGACAAAAGATTATGGTCAA+GGG | 0.594358 | 8.1:-81919708 | MS.gene072146:CDS |
| GCTGATTCAGGACATTATGT+TGG | 0.595896 | 8.1:-81911372 | MS.gene072146:CDS |
| CAAGCTCGCTGAATAAGTCA+CGG | 0.595928 | 8.1:+81918213 | None:intergenic |
| GGCTGGGTCAAGCAAGAGAA+CGG | 0.597807 | 8.1:-81911351 | MS.gene072146:intron |
| GGTCAAAAGCTAATGATGAT+GGG | 0.606310 | 8.1:-81919392 | MS.gene072146:CDS |
| ATCACTAGACTATCTGGAGG+AGG | 0.606479 | 8.1:-81911192 | MS.gene072146:intron |
| TTCTGTCCCAGAATTGAAGT+CGG | 0.608208 | 8.1:-81918403 | MS.gene072146:CDS |
| CTGTATTGACCCACAAGGGT+AGG | 0.611955 | 8.1:-81911398 | MS.gene072146:CDS |
| GCCATCTGTTGCTCCAATGG+AGG | 0.618123 | 8.1:-81911564 | MS.gene072146:CDS |
| AGAGAATAATAACCTTGGCA+GGG | 0.620428 | 8.1:+81914135 | None:intergenic |
| CGAGCTTGATAAAAGTGTCA+AGG | 0.622464 | 8.1:-81918198 | MS.gene072146:CDS |
| AAGCTCGCTGAATAAGTCAC+GGG | 0.622507 | 8.1:+81918214 | None:intergenic |
| GGCAAAGTTAGGAGTGAAAG+CGG | 0.624183 | 8.1:-81919506 | MS.gene072146:intron |
| AGGGGTCATCAAATGGAGGA+GGG | 0.627869 | 8.1:-81911589 | MS.gene072146:CDS |
| TCTGTTGCTCCAATGGAGGA+AGG | 0.637913 | 8.1:-81911560 | MS.gene072146:intron |
| ATTTAGGGGTCATCAAATGG+AGG | 0.638714 | 8.1:-81911593 | MS.gene072146:intron |
| AATCGAACCATTAATCATGG+TGG | 0.640991 | 8.1:+81920716 | None:intergenic |
| GACCCATCTATAAGTGCGTG+TGG | 0.645197 | 8.1:-81920840 | MS.gene072146:CDS |
| CAAAAGATTATGGTCAAGGG+TGG | 0.645610 | 8.1:-81919705 | MS.gene072146:CDS |
| CAGTTCCTAAGAGATGAAGA+AGG | 0.648671 | 8.1:-81912715 | MS.gene072146:CDS |
| TCAATTCTGGGACAGAATGG+AGG | 0.654979 | 8.1:+81918409 | None:intergenic |
| GGTTGCTGTATTGACCCACA+AGG | 0.664211 | 8.1:-81911403 | MS.gene072146:CDS |
| TCGTAAACATCCAACTCCAG+AGG | 0.671783 | 8.1:+81912891 | None:intergenic |
| GGGGTCATCAAATGGAGGAG+GGG | 0.682211 | 8.1:-81911588 | MS.gene072146:CDS |
| GAGGTAAACCATTTGCACGA+AGG | 0.687364 | 8.1:-81915439 | MS.gene072146:CDS |
| AGAAAGTTACCTAGATCCAG+GGG | 0.703050 | 8.1:+81916845 | None:intergenic |
| TAAATGCCACATATCGCAGG+AGG | 0.705771 | 8.1:-81915458 | MS.gene072146:CDS |
| GACATCACTAGACTATCTGG+AGG | 0.706557 | 8.1:-81911195 | MS.gene072146:CDS |
| GTTGCTGTATTGACCCACAA+GGG | 0.727289 | 8.1:-81911402 | MS.gene072146:CDS |
| AAAAGAAACACAAATGACTG+GGG | 0.734411 | 8.1:-81911436 | MS.gene072146:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 81910891 | 81920865 | 81910891 | ID=MS.gene072146 |
| chr8.1 | mRNA | 81910891 | 81920865 | 81910891 | ID=MS.gene072146.t1;Parent=MS.gene072146 |
| chr8.1 | exon | 81920724 | 81920865 | 81920724 | ID=MS.gene072146.t1.exon1;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81920724 | 81920865 | 81920724 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81919695 | 81919840 | 81919695 | ID=MS.gene072146.t1.exon2;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81919695 | 81919840 | 81919695 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81919507 | 81919542 | 81919507 | ID=MS.gene072146.t1.exon3;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81919507 | 81919542 | 81919507 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81919307 | 81919414 | 81919307 | ID=MS.gene072146.t1.exon4;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81919307 | 81919414 | 81919307 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81918393 | 81918493 | 81918393 | ID=MS.gene072146.t1.exon5;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81918393 | 81918493 | 81918393 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81918172 | 81918298 | 81918172 | ID=MS.gene072146.t1.exon6;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81918172 | 81918298 | 81918172 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81917012 | 81917071 | 81917012 | ID=MS.gene072146.t1.exon7;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81917012 | 81917071 | 81917012 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81916855 | 81916922 | 81916855 | ID=MS.gene072146.t1.exon8;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81916855 | 81916922 | 81916855 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81916510 | 81916560 | 81916510 | ID=MS.gene072146.t1.exon9;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81916510 | 81916560 | 81916510 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81915429 | 81915537 | 81915429 | ID=MS.gene072146.t1.exon10;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81915429 | 81915537 | 81915429 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81914148 | 81914236 | 81914148 | ID=MS.gene072146.t1.exon11;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81914148 | 81914236 | 81914148 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81913038 | 81913107 | 81913038 | ID=MS.gene072146.t1.exon12;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81913038 | 81913107 | 81913038 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81912845 | 81912925 | 81912845 | ID=MS.gene072146.t1.exon13;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81912845 | 81912925 | 81912845 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81912639 | 81912734 | 81912639 | ID=MS.gene072146.t1.exon14;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81912639 | 81912734 | 81912639 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81911561 | 81911609 | 81911561 | ID=MS.gene072146.t1.exon15;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81911561 | 81911609 | 81911561 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81911352 | 81911462 | 81911352 | ID=MS.gene072146.t1.exon16;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81911352 | 81911462 | 81911352 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81911193 | 81911267 | 81911193 | ID=MS.gene072146.t1.exon17;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81911193 | 81911267 | 81911193 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| chr8.1 | exon | 81910891 | 81910946 | 81910891 | ID=MS.gene072146.t1.exon18;Parent=MS.gene072146.t1 |
| chr8.1 | CDS | 81910891 | 81910946 | 81910891 | ID=cds.MS.gene072146.t1;Parent=MS.gene072146.t1 |
| Gene Sequence |
| Protein sequence |