AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072518


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072518.t1 MTR_7g113030 97.179 319 9 0 1 319 1 319 0.0 649
MS.gene072518.t1 MTR_7g113050 94.357 319 18 0 1 319 1 319 0.0 633
MS.gene072518.t1 MTR_7g112615 91.850 319 26 0 1 319 1 319 0.0 616
MS.gene072518.t1 MTR_7g112620 86.834 319 42 0 1 319 1 319 0.0 589
MS.gene072518.t1 MTR_7g113020 86.207 319 44 0 1 319 1 319 0.0 587
MS.gene072518.t1 MTR_7g112960 75.862 319 77 0 1 319 1 319 0.0 520
MS.gene072518.t1 MTR_7g112963 76.176 319 76 0 1 319 1 319 0.0 513
MS.gene072518.t1 MTR_7g112970 75.549 319 75 1 1 319 1 316 0.0 511
MS.gene072518.t1 MTR_4g005160 73.684 323 80 3 1 319 1 322 0.0 508
MS.gene072518.t1 MTR_7g113050 93.249 237 16 0 1 237 1 237 3.23e-169 469
MS.gene072518.t1 MTR_7g112615 91.561 237 20 0 1 237 1 237 4.68e-166 461
MS.gene072518.t1 MTR_7g113010 72.242 281 78 0 1 281 1 281 7.64e-153 441
MS.gene072518.t1 MTR_4g120240 61.059 321 121 3 1 319 37 355 7.11e-145 412
MS.gene072518.t1 MTR_7g108825 60.815 319 123 2 1 319 1 317 8.07e-141 400
MS.gene072518.t1 MTR_8g076680 48.297 323 155 4 1 319 3 317 2.37e-106 313
MS.gene072518.t1 MTR_7g112615 90.566 159 15 0 1 159 1 159 3.48e-106 307
MS.gene072518.t1 MTR_7g108825 59.494 237 94 2 1 237 1 235 5.34e-98 289
MS.gene072518.t1 MTR_7g112910 58.635 249 48 5 72 319 1 195 1.93e-90 268
MS.gene072518.t1 MTR_1g083480 78.616 159 30 2 1 156 1 158 5.74e-90 266
MS.gene072518.t1 MTR_8g076680 49.378 241 112 3 1 237 3 237 3.57e-81 246
MS.gene072518.t1 MTR_2g090240 36.760 321 189 6 1 318 1 310 1.06e-66 212
MS.gene072518.t1 MTR_4g089060 36.760 321 188 6 1 318 1 309 2.03e-65 208
MS.gene072518.t1 MTR_3g024250 86.916 107 14 0 46 152 1 107 3.39e-65 202
MS.gene072518.t1 MTR_2g090245 35.826 321 192 7 1 318 1 310 6.64e-63 202
MS.gene072518.t1 MTR_4g089040 36.137 321 190 6 1 318 1 309 6.76e-63 202
MS.gene072518.t1 MTR_4g089060 34.195 348 187 7 1 318 1 336 2.77e-60 196
MS.gene072518.t1 MTR_4g089060 39.056 233 133 3 1 231 1 226 8.41e-54 176
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072518.t1 AT3G05600 60.185 324 124 4 1 319 1 324 2.43e-147 417
MS.gene072518.t1 AT4G02340 57.188 320 132 3 1 319 1 316 5.99e-138 394
MS.gene072518.t1 AT2G26740 61.180 322 118 4 4 319 1 321 8.06e-130 373
MS.gene072518.t1 AT4G15960 52.615 325 147 3 1 319 51 374 1.36e-124 362
MS.gene072518.t1 AT2G26750 58.567 321 127 4 4 319 1 320 2.51e-124 359
MS.gene072518.t1 AT4G15955 50.613 326 123 4 5 319 6 304 9.91e-110 321
MS.gene072518.t1 AT3G05600 61.157 242 89 4 1 237 1 242 6.76e-108 314
MS.gene072518.t1 AT3G51000 48.428 318 159 5 4 319 5 319 3.98e-103 305
MS.gene072518.t1 AT4G15955 60.920 174 58 2 5 168 6 179 8.75e-72 220
MS.gene072518.t1 AT4G15955 61.212 165 54 2 5 159 6 170 1.26e-67 209

Find 84 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAAGCTTTGATTCTTTC+AGG 0.126719 7.4:+4054477 None:intergenic
GGCATCAACGGTCCTGATTT+TGG 0.162298 7.4:+4054422 None:intergenic
CCTCTTGTCTTGTTCCTTCA+TGG 0.187509 7.4:-4054747 MS.gene072518:CDS
TTATTACATATGTAGATTTC+AGG 0.264776 7.4:-4054376 MS.gene072518:intron
AAAATGCATATTGCTGAAAA+AGG 0.266560 7.4:-4054780 MS.gene072518:CDS
AACTCTCCCTTGGGAAATAT+TGG 0.280214 7.4:+4053033 None:intergenic
ATATTTCCCAAGGGAGAGTT+TGG 0.305783 7.4:-4053030 MS.gene072518:CDS
CGCCATGAATACCACAGTTC+GGG 0.324950 7.4:+4054720 None:intergenic
CACAGAACAGTGGAAGTAAA+TGG 0.328559 7.4:-4054807 MS.gene072518:CDS
ATTTCTTGTGGCTCATGATT+GGG 0.336317 7.4:-4054535 MS.gene072518:CDS
AGCTGATGGCACCATGGAAT+GGG 0.338259 7.4:-4052537 MS.gene072518:CDS
TATTTCTTGTGGCTCATGAT+TGG 0.353373 7.4:-4054536 MS.gene072518:CDS
GTCTCCAAATTTGAGAAAAC+AGG 0.355343 7.4:-4052937 MS.gene072518:CDS
GATAATCACTTCTTCCAGAT+TGG 0.362380 7.4:+4052405 None:intergenic
CATGATTGGGGTGCCATCAT+TGG 0.372270 7.4:-4054522 MS.gene072518:CDS
GATGCCATGCATGCTGCTTA+TGG 0.379998 7.4:-4054405 MS.gene072518:CDS
ACCCTCACAACTCGGAAAAC+TGG 0.389484 7.4:-4053060 MS.gene072518:CDS
CCCAAGGGAGAGTTTGGAAC+TGG 0.389949 7.4:-4053024 MS.gene072518:CDS
AGCCAAGAGGGTAAGGTGTC+AGG 0.390169 7.4:+4052985 None:intergenic
ATCACAGGAACCAGGCAAAA+TGG 0.395142 7.4:-4053127 MS.gene072518:intron
GCTCCGGATCTCCGTGGTTA+TGG 0.399328 7.4:-4054654 MS.gene072518:CDS
TTACTTGTATTGTAGAAATT+GGG 0.399713 7.4:-4052560 MS.gene072518:intron
TCCCCGAACTGTGGTATTCA+TGG 0.400391 7.4:-4054722 MS.gene072518:CDS
GAAGAAGTGATTATCCAAAA+AGG 0.403789 7.4:-4052397 MS.gene072518:CDS
CTCCTGACACCTTACCCTCT+TGG 0.407073 7.4:-4052987 MS.gene072518:CDS
CATAAGCTTTGATTCTTTCA+GGG 0.418162 7.4:+4054478 None:intergenic
GTGCCTGTGAAATTCATTAC+AGG 0.432209 7.4:-4052502 MS.gene072518:CDS
CAAGGAAGATGTGCCCAATC+TGG 0.434486 7.4:-4052419 MS.gene072518:CDS
TCCGTAGAAACCCCAAAATC+AGG 0.443771 7.4:-4054434 MS.gene072518:CDS
ATAATCACTTCTTCCAGATT+GGG 0.447163 7.4:+4052406 None:intergenic
TCCAGTTCCAAACTCTCCCT+TGG 0.447351 7.4:+4053023 None:intergenic
CGGCTACCGTGCTGTTGCTC+CGG 0.456232 7.4:-4054670 MS.gene072518:CDS
TTCTGTAAGCCAAGAGGGTA+AGG 0.457253 7.4:+4052978 None:intergenic
GAAAATCTATAAGTGCAATA+AGG 0.461083 7.4:+4054574 None:intergenic
GCGCCATGAATACCACAGTT+CGG 0.461173 7.4:+4054719 None:intergenic
GAGCTGATGGCACCATGGAA+TGG 0.461653 7.4:-4052538 MS.gene072518:CDS
TCACCATAACCACGGAGATC+CGG 0.490155 7.4:+4054651 None:intergenic
CCAGTTCCAAACTCTCCCTT+GGG 0.501905 7.4:+4053024 None:intergenic
ACAAAGATACCAACCAATGA+TGG 0.534758 7.4:+4054509 None:intergenic
AGGCAAAATGGAAGCTGAGA+TGG 0.540634 7.4:-4053115 MS.gene072518:CDS
ATGGAATGGGGTGAAAATCA+AGG 0.540835 7.4:-4052524 MS.gene072518:CDS
TTTCTTGTGGCTCATGATTG+GGG 0.543062 7.4:-4054534 MS.gene072518:CDS
TCTCCCTTGGGAAATATTGG+AGG 0.546141 7.4:+4053036 None:intergenic
TTGGGGTTTCTACGGAGTAG+TGG 0.547389 7.4:+4054441 None:intergenic
ATTGTAGCTCTCAGCTCCCT+CGG 0.548619 7.4:-4054690 MS.gene072518:CDS
ATCTCCATAAGCAGCATGCA+TGG 0.554133 7.4:+4054401 None:intergenic
TCTTCTTCTGTAAGCCAAGA+GGG 0.563661 7.4:+4052973 None:intergenic
GAGCAACAGCACGGTAGCCG+AGG 0.563671 7.4:+4054673 None:intergenic
TCACCTGTAATGAATTTCAC+AGG 0.570947 7.4:+4052499 None:intergenic
AGCAACAGCACGGTAGCCGA+GGG 0.572130 7.4:+4054674 None:intergenic
ATTGGGGTGCCATCATTGGT+TGG 0.574625 7.4:-4054518 MS.gene072518:CDS
ACAGTTCGGGGAAGCCATGA+AGG 0.577839 7.4:+4054733 None:intergenic
GAAGGAGTATATCCATGGTG+GGG 0.578871 7.4:-4052446 MS.gene072518:CDS
TGAAGGAGTATATCCATGGT+GGG 0.583874 7.4:-4052447 MS.gene072518:CDS
TGGTCCTCCAATATTTCCCA+AGG 0.588717 7.4:-4053040 MS.gene072518:CDS
GAAGCTGAGATGGCTGAAGT+TGG 0.590883 7.4:-4053105 MS.gene072518:CDS
AGCTGAGAGCTACAATCTGA+TGG 0.590990 7.4:+4054697 None:intergenic
AGCAGCATGCATGGCATCAA+CGG 0.592010 7.4:+4054410 None:intergenic
TGGTCCGCATCACAGGAACC+AGG 0.594410 7.4:-4053135 MS.gene072518:intron
TCTTCAGTTAGTAGCTACAC+AGG 0.594878 7.4:-4054615 MS.gene072518:CDS
AAGGAGTATATCCATGGTGG+GGG 0.600787 7.4:-4052445 MS.gene072518:CDS
TTCATGGCTTCCCCGAACTG+TGG 0.605850 7.4:-4054731 MS.gene072518:CDS
TGTTGATCAAGTATTTCTTG+TGG 0.608957 7.4:-4054547 MS.gene072518:CDS
CAACAATCAAGAAGCAGCAG+AGG 0.610084 7.4:-4052362 MS.gene072518:CDS
ACTAACTGAAGACGGAGCAT+CGG 0.615174 7.4:+4054626 None:intergenic
CCATGAAGGAACAAGACAAG+AGG 0.618716 7.4:+4054747 None:intergenic
TTGTAGAAATTGGGAGCTGA+TGG 0.619295 7.4:-4052551 MS.gene072518:intron
AACATGAAGGAGTATATCCA+TGG 0.620148 7.4:-4052451 MS.gene072518:CDS
ATACTCCTTCATGTTTAGTG+AGG 0.623538 7.4:+4052459 None:intergenic
GCTGATGGCACCATGGAATG+GGG 0.628565 7.4:-4052536 MS.gene072518:CDS
GTTTGGAACTGGATTCAACT+CGG 0.629425 7.4:-4053013 MS.gene072518:CDS
ATTTGGAGACAAAATAAGCA+AGG 0.634682 7.4:+4052950 None:intergenic
ATGAAGGAGTATATCCATGG+TGG 0.640343 7.4:-4052448 MS.gene072518:CDS
TGAAAAGTACCCTCACAACT+CGG 0.640586 7.4:-4053068 MS.gene072518:CDS
ATTGGGAGCTGATGGCACCA+TGG 0.649732 7.4:-4052543 MS.gene072518:CDS
GTCTTCTTCTGTAAGCCAAG+AGG 0.650739 7.4:+4052972 None:intergenic
GTGTAGCTACTAACTGAAGA+CGG 0.652352 7.4:+4054618 None:intergenic
ATACACCTCACTAAACATGA+AGG 0.662683 7.4:-4052464 MS.gene072518:CDS
GGAGATCCGGAGCAACAGCA+CGG 0.668358 7.4:+4054664 None:intergenic
AGGAATAGAACACAGAACAG+TGG 0.676997 7.4:-4054817 MS.gene072518:CDS
GCCATGAATACCACAGTTCG+GGG 0.692309 7.4:+4054721 None:intergenic
GGTCCTCCAATATTTCCCAA+GGG 0.706108 7.4:-4053039 MS.gene072518:CDS
GCTGTTGCTCCGGATCTCCG+TGG 0.713696 7.4:-4054660 MS.gene072518:CDS
CATCGGTGTCACCATAACCA+CGG 0.714613 7.4:+4054643 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGTGATTTTATTTTAT+AGG + chr7.4:4052943-4052962 None:intergenic 10.0%
!!! AAATGTGATTTTATTTTATA+GGG + chr7.4:4052942-4052961 None:intergenic 10.0%
!! AATACTTAATAACTAAATTC+AGG - chr7.4:4053189-4053208 MS.gene072518:intron 15.0%
!! ATACTTAATAACTAAATTCA+GGG - chr7.4:4053190-4053209 MS.gene072518:intron 15.0%
!! ATTGTTTAATATAATTAAGG+AGG - chr7.4:4053319-4053338 MS.gene072518:intron 15.0%
!! CAAAATTCTAAATATTTAGA+TGG + chr7.4:4052911-4052930 None:intergenic 15.0%
!! GAGATTGTTTAATATAATTA+AGG - chr7.4:4053316-4053335 MS.gene072518:intron 15.0%
!!! ATGTTGATGAAAAATTTTAT+AGG + chr7.4:4052972-4052991 None:intergenic 15.0%
!!! TGTTGATGAAAAATTTTATA+GGG + chr7.4:4052971-4052990 None:intergenic 15.0%
!! AAACTTAATTATATAGATGC+AGG - chr7.4:4053159-4053178 MS.gene072518:intron 20.0%
!! ATTACTTGTATTGTAGAAAT+TGG - chr7.4:4054582-4054601 MS.gene072518:CDS 20.0%
!! ATTGATTATTGAATACGTTA+GGG - chr7.4:4053743-4053762 MS.gene072518:intron 20.0%
!! TCATGAGTCATAAAATATTA+GGG + chr7.4:4052860-4052879 None:intergenic 20.0%
!! TCTGTTTCAAAACATTATAT+TGG + chr7.4:4053920-4053939 None:intergenic 20.0%
!! TTACTTGTATTGTAGAAATT+GGG - chr7.4:4054583-4054602 MS.gene072518:CDS 20.0%
!! TTATTACATATGTAGATTTC+AGG - chr7.4:4052767-4052786 MS.gene072518:intron 20.0%
!! TTCATGAGTCATAAAATATT+AGG + chr7.4:4052861-4052880 None:intergenic 20.0%
!!! AAAATATCCATCAACATTTT+TGG - chr7.4:4053039-4053058 MS.gene072518:CDS 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr7.4:4053099-4053118 MS.gene072518:CDS 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr7.4:4053100-4053119 MS.gene072518:CDS 20.0%
!!! ACCAATAACAGTTTTAAAAA+TGG + chr7.4:4054458-4054477 None:intergenic 20.0%
!!! TATATGTTGACAATTCTTTT+TGG - chr7.4:4054313-4054332 MS.gene072518:intron 20.0%
!!! TATTGATTATTGAATACGTT+AGG - chr7.4:4053742-4053761 MS.gene072518:intron 20.0%
!!! TCCATTTTTAAAACTGTTAT+TGG - chr7.4:4054454-4054473 MS.gene072518:CDS 20.0%
!!! TGTTGATGGAAATTTTTTAT+AGG + chr7.4:4053003-4053022 None:intergenic 20.0%
!!! TTAAAAAAAGCACTTGATTA+AGG - chr7.4:4053462-4053481 MS.gene072518:intron 20.0%
!!! TTAATCAAGTGCTTTTTTTA+AGG + chr7.4:4053463-4053482 None:intergenic 20.0%
!!! TTTGTTTATCTAAAATGAAG+TGG - chr7.4:4053944-4053963 MS.gene072518:intron 20.0%
! AAAATGCATATTGCTGAAAA+AGG - chr7.4:4052363-4052382 MS.gene072518:CDS 25.0%
! AATGCATCTTTCATTAGAAT+TGG + chr7.4:4054562-4054581 None:intergenic 25.0%
! ACAAAACTGTGAATATTTGT+AGG - chr7.4:4053130-4053149 MS.gene072518:intron 25.0%
! ACAAAGACTAAAAATGTTGA+TGG + chr7.4:4053017-4053036 None:intergenic 25.0%
! AGAATTGTATGACATCATAA+TGG - chr7.4:4053800-4053819 MS.gene072518:intron 25.0%
! ATGATATGTAGCTAAAAGAA+AGG + chr7.4:4053853-4053872 None:intergenic 25.0%
! ATGCATCTTTCATTAGAATT+GGG + chr7.4:4054561-4054580 None:intergenic 25.0%
! ATTTATTTGAGAGGATTTAC+GGG - chr7.4:4053289-4053308 MS.gene072518:intron 25.0%
! CAAAACTGTGAATATTTGTA+GGG - chr7.4:4053131-4053150 MS.gene072518:intron 25.0%
! GAAAATCTATAAGTGCAATA+AGG + chr7.4:4052572-4052591 None:intergenic 25.0%
! GAATTAACTGATCAACTATA+AGG + chr7.4:4053660-4053679 None:intergenic 25.0%
! GAATTGTCAACATATATTTG+TGG + chr7.4:4054309-4054328 None:intergenic 25.0%
! GATTGCTTAAAGTAAATTAG+GGG + chr7.4:4052838-4052857 None:intergenic 25.0%
! GATTTATTTGAGAGGATTTA+CGG - chr7.4:4053288-4053307 MS.gene072518:intron 25.0%
! GGATTGCTTAAAGTAAATTA+GGG + chr7.4:4052839-4052858 None:intergenic 25.0%
! TACAGGGTTAATTAAGTAAA+TGG - chr7.4:4052884-4052903 MS.gene072518:intron 25.0%
! TATGACTCATGAAATATACA+GGG - chr7.4:4052868-4052887 MS.gene072518:intron 25.0%
! TCAAATAAATCTATCCAAAC+AGG + chr7.4:4053279-4053298 None:intergenic 25.0%
! TGATTGAATATAACATGTGT+CGG + chr7.4:4054432-4054451 None:intergenic 25.0%
! TTATGACTCATGAAATATAC+AGG - chr7.4:4052867-4052886 MS.gene072518:intron 25.0%
! TTTGGATAGATTTATTTGAG+AGG - chr7.4:4053280-4053299 MS.gene072518:intron 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG + chr7.4:4053067-4053086 None:intergenic 25.0%
!! ATTGCACTTATAGATTTTCT+GGG - chr7.4:4052573-4052592 MS.gene072518:intron 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG + chr7.4:4053066-4053085 None:intergenic 25.0%
!! CTGAATAACATAATTGCTTT+TGG - chr7.4:4053988-4054007 MS.gene072518:intron 25.0%
!! TATTGCACTTATAGATTTTC+TGG - chr7.4:4052572-4052591 MS.gene072518:intron 25.0%
!!! TCTTATGATTTTAGTTTGAG+TGG - chr7.4:4053218-4053237 MS.gene072518:intron 25.0%
AATCAAGTGTTAAATCCACT+TGG + chr7.4:4053597-4053616 None:intergenic 30.0%
AGTAGAGTCTAAATCAAAAG+AGG - chr7.4:4053631-4053650 MS.gene072518:intron 30.0%
ATAATCACTTCTTCCAGATT+GGG + chr7.4:4054740-4054759 None:intergenic 30.0%
ATCAAGTGTTAAATCCACTT+GGG + chr7.4:4053596-4053615 None:intergenic 30.0%
ATTGCTGAAAAAGGAAAAGA+AGG - chr7.4:4052372-4052391 MS.gene072518:CDS 30.0%
ATTTGGAGACAAAATAAGCA+AGG + chr7.4:4054196-4054215 None:intergenic 30.0%
CAACATGACAATAATCTATG+CGG - chr7.4:4054349-4054368 MS.gene072518:intron 30.0%
GAAGAAGTGATTATCCAAAA+AGG - chr7.4:4054746-4054765 MS.gene072518:CDS 30.0%
GGGATTGCTTAAAGTAAATT+AGG + chr7.4:4052840-4052859 None:intergenic 30.0%
TGTTGATCAAGTATTTCTTG+TGG - chr7.4:4052596-4052615 MS.gene072518:intron 30.0%
! ACATAAGCTTTGATTCTTTC+AGG + chr7.4:4052669-4052688 None:intergenic 30.0%
! ACATGTTGTGCATTTTGTTA+GGG - chr7.4:4053714-4053733 MS.gene072518:intron 30.0%
! CATAAGCTTTGATTCTTTCA+GGG + chr7.4:4052668-4052687 None:intergenic 30.0%
! TACACAGGTTTTCATATAGT+AGG - chr7.4:4052543-4052562 MS.gene072518:CDS 30.0%
ACAAAGATACCAACCAATGA+TGG + chr7.4:4052637-4052656 None:intergenic 35.0%
ACAACGCTAAACACAAACAT+TGG + chr7.4:4054502-4054521 None:intergenic 35.0%
AGTGATTATCCAAAAAGGAG+TGG - chr7.4:4054751-4054770 MS.gene072518:CDS 35.0%
ATACACCTCACTAAACATGA+AGG - chr7.4:4054679-4054698 MS.gene072518:CDS 35.0%
ATACTCCTTCATGTTTAGTG+AGG + chr7.4:4054687-4054706 None:intergenic 35.0%
ATGCTTAAGGAAAATGTCAC+AGG - chr7.4:4053070-4053089 MS.gene072518:CDS 35.0%
ATTTCTTGTGGCTCATGATT+GGG - chr7.4:4052608-4052627 MS.gene072518:intron 35.0%
CAGAGACAAAAGTAGAAAAG+TGG + chr7.4:4052812-4052831 None:intergenic 35.0%
GATAATCACTTCTTCCAGAT+TGG + chr7.4:4054741-4054760 None:intergenic 35.0%
GTCTCCAAATTTGAGAAAAC+AGG - chr7.4:4054206-4054225 MS.gene072518:intron 35.0%
TATCAACACGTATCAAACAC+CGG + chr7.4:4054402-4054421 None:intergenic 35.0%
TATTTCTTGTGGCTCATGAT+TGG - chr7.4:4052607-4052626 MS.gene072518:intron 35.0%
TCACCTGTAATGAATTTCAC+AGG + chr7.4:4054647-4054666 None:intergenic 35.0%
TCTGAGTAGGGTAATACTTT+AGG + chr7.4:4053877-4053896 None:intergenic 35.0%
TGCTTAAGGAAAATGTCACA+GGG - chr7.4:4053071-4053090 MS.gene072518:CDS 35.0%
TTAGGGACCAAAAATGTTGA+TGG + chr7.4:4053049-4053068 None:intergenic 35.0%
TTTGGTCCCTAAAATGCTTA+AGG - chr7.4:4053057-4053076 MS.gene072518:CDS 35.0%
! AACATGAAGGAGTATATCCA+TGG - chr7.4:4054692-4054711 MS.gene072518:CDS 35.0%
! AATATAACATGTGTCGGTGT+CGG + chr7.4:4054426-4054445 None:intergenic 35.0%
! GAAGCCTGTTTTCTCAAATT+TGG + chr7.4:4054213-4054232 None:intergenic 35.0%
! GACATGTTGTGCATTTTGTT+AGG - chr7.4:4053713-4053732 MS.gene072518:intron 35.0%
! TATTTTCCCTGTGCCAATTT+CGG + chr7.4:4053518-4053537 None:intergenic 35.0%
!! AGGGTGAAGTTCTCTTATTT+TGG - chr7.4:4053762-4053781 MS.gene072518:intron 35.0%
!!! GGGTGAAGTTCTCTTATTTT+GGG - chr7.4:4053763-4053782 MS.gene072518:intron 35.0%
AACTCTCCCTTGGGAAATAT+TGG + chr7.4:4054113-4054132 None:intergenic 40.0%
AGGAATAGAACACAGAACAG+TGG - chr7.4:4052326-4052345 MS.gene072518:CDS 40.0%
AGTATCTCTCTTAAGGTGAC+AGG + chr7.4:4053544-4053563 None:intergenic 40.0%
AGTGTTAAATCCACTTGGGA+TGG + chr7.4:4053592-4053611 None:intergenic 40.0%
AGTTTGAGTGGTGTTTGATG+TGG - chr7.4:4053230-4053249 MS.gene072518:intron 40.0%
ATATTTCCCAAGGGAGAGTT+TGG - chr7.4:4054113-4054132 MS.gene072518:intron 40.0%
ATCAACACGTATCAAACACC+GGG + chr7.4:4054401-4054420 None:intergenic 40.0%
ATGATACTGATACGCCTGTT+TGG - chr7.4:4053262-4053281 MS.gene072518:intron 40.0%
ATGGAATGGGGTGAAAATCA+AGG - chr7.4:4054619-4054638 MS.gene072518:CDS 40.0%
CACAGAACAGTGGAAGTAAA+TGG - chr7.4:4052336-4052355 MS.gene072518:CDS 40.0%
GAGACGATTCAATCTGAGTA+GGG + chr7.4:4053889-4053908 None:intergenic 40.0%
GTGCCTGTGAAATTCATTAC+AGG - chr7.4:4054641-4054660 MS.gene072518:CDS 40.0%
GTGTAGCTACTAACTGAAGA+CGG + chr7.4:4052528-4052547 None:intergenic 40.0%
GTTTGAGTGGTGTTTGATGT+GGG - chr7.4:4053231-4053250 MS.gene072518:intron 40.0%
TCTTCAGTTAGTAGCTACAC+AGG - chr7.4:4052528-4052547 MS.gene072518:CDS 40.0%
TCTTCTTCTGTAAGCCAAGA+GGG + chr7.4:4054173-4054192 None:intergenic 40.0%
TTGTAGAAATTGGGAGCTGA+TGG - chr7.4:4054592-4054611 MS.gene072518:CDS 40.0%
TTTCTTGTGGCTCATGATTG+GGG - chr7.4:4052609-4052628 MS.gene072518:intron 40.0%
! AGACTGGAGTATCTCTCTTA+AGG + chr7.4:4053551-4053570 None:intergenic 40.0%
! ATGAAGGAGTATATCCATGG+TGG - chr7.4:4054695-4054714 MS.gene072518:CDS 40.0%
! GTTTGGAACTGGATTCAACT+CGG - chr7.4:4054130-4054149 MS.gene072518:intron 40.0%
! TGAAGGAGTATATCCATGGT+GGG - chr7.4:4054696-4054715 MS.gene072518:CDS 40.0%
! TTGATTTTCACCCCATTCCA+TGG + chr7.4:4054620-4054639 None:intergenic 40.0%
!! TGAAAAGTACCCTCACAACT+CGG - chr7.4:4054075-4054094 MS.gene072518:intron 40.0%
!!! TCCTGATTTTGGGGTTTCTA+CGG + chr7.4:4052713-4052732 None:intergenic 40.0%
AAGAGAGATACTCCAGTCTC+AGG - chr7.4:4053552-4053571 MS.gene072518:intron 45.0%
ACTAACTGAAGACGGAGCAT+CGG + chr7.4:4052520-4052539 None:intergenic 45.0%
AGCTGAGAGCTACAATCTGA+TGG + chr7.4:4052449-4052468 None:intergenic 45.0%
AGGCAAAATGGAAGCTGAGA+TGG - chr7.4:4054028-4054047 MS.gene072518:intron 45.0%
ATCACAGGAACCAGGCAAAA+TGG - chr7.4:4054016-4054035 MS.gene072518:intron 45.0%
ATCTCCATAAGCAGCATGCA+TGG + chr7.4:4052745-4052764 None:intergenic 45.0%
CAACAATCAAGAAGCAGCAG+AGG - chr7.4:4054781-4054800 MS.gene072518:CDS 45.0%
CCATGAAGGAACAAGACAAG+AGG + chr7.4:4052399-4052418 None:intergenic 45.0%
CGAGACGATTCAATCTGAGT+AGG + chr7.4:4053890-4053909 None:intergenic 45.0%
GGTCCTCCAATATTTCCCAA+GGG - chr7.4:4054104-4054123 MS.gene072518:intron 45.0%
GTCTTCTTCTGTAAGCCAAG+AGG + chr7.4:4054174-4054193 None:intergenic 45.0%
TCCGTAGAAACCCCAAAATC+AGG - chr7.4:4052709-4052728 MS.gene072518:intron 45.0%
TCGATCTATCCCACCGAAAT+TGG - chr7.4:4053502-4053521 MS.gene072518:intron 45.0%
TCTCCCTTGGGAAATATTGG+AGG + chr7.4:4054110-4054129 None:intergenic 45.0%
TGGTCCTCCAATATTTCCCA+AGG - chr7.4:4054103-4054122 MS.gene072518:intron 45.0%
TTCTGTAAGCCAAGAGGGTA+AGG + chr7.4:4054168-4054187 None:intergenic 45.0%
TTTCAGTTTGAAGACGTGCC+CGG - chr7.4:4054380-4054399 MS.gene072518:CDS 45.0%
! AAGGAGTATATCCATGGTGG+GGG - chr7.4:4054698-4054717 MS.gene072518:CDS 45.0%
! ACCAGTTTTCCGAGTTGTGA+GGG + chr7.4:4054087-4054106 None:intergenic 45.0%
! ATCTCAGCTTCCATTTTGCC+TGG + chr7.4:4054029-4054048 None:intergenic 45.0%
! CATCAACGGTCCTGATTTTG+GGG + chr7.4:4052722-4052741 None:intergenic 45.0%
! CCTCTTGTCTTGTTCCTTCA+TGG - chr7.4:4052396-4052415 MS.gene072518:CDS 45.0%
! GAAGGAGTATATCCATGGTG+GGG - chr7.4:4054697-4054716 MS.gene072518:CDS 45.0%
! GCATCAACGGTCCTGATTTT+GGG + chr7.4:4052723-4052742 None:intergenic 45.0%
ACCCTCACAACTCGGAAAAC+TGG - chr7.4:4054083-4054102 MS.gene072518:intron 50.0%
AGCAGCATGCATGGCATCAA+CGG + chr7.4:4052736-4052755 None:intergenic 50.0%
AGCTGATGGCACCATGGAAT+GGG - chr7.4:4054606-4054625 MS.gene072518:CDS 50.0%
ATCCCACCGAAATTGGCACA+GGG - chr7.4:4053509-4053528 MS.gene072518:intron 50.0%
ATTGTAGCTCTCAGCTCCCT+CGG - chr7.4:4052453-4052472 MS.gene072518:CDS 50.0%
CAAGGAAGATGTGCCCAATC+TGG - chr7.4:4054724-4054743 MS.gene072518:CDS 50.0%
CCAGTTCCAAACTCTCCCTT+GGG + chr7.4:4054122-4054141 None:intergenic 50.0%
CGCCATGAATACCACAGTTC+GGG + chr7.4:4052426-4052445 None:intergenic 50.0%
GAAGCTGAGATGGCTGAAGT+TGG - chr7.4:4054038-4054057 MS.gene072518:intron 50.0%
GCCATGAATACCACAGTTCG+GGG + chr7.4:4052425-4052444 None:intergenic 50.0%
GCGCCATGAATACCACAGTT+CGG + chr7.4:4052427-4052446 None:intergenic 50.0%
TAAATCCACTTGGGATGGCC+TGG + chr7.4:4053587-4053606 None:intergenic 50.0%
TATCCCACCGAAATTGGCAC+AGG - chr7.4:4053508-4053527 MS.gene072518:intron 50.0%
TCACCATAACCACGGAGATC+CGG + chr7.4:4052495-4052514 None:intergenic 50.0%
TCCAGTTCCAAACTCTCCCT+TGG + chr7.4:4054123-4054142 None:intergenic 50.0%
TCCCCGAACTGTGGTATTCA+TGG - chr7.4:4052421-4052440 MS.gene072518:CDS 50.0%
TTCCCTGTGCCAATTTCGGT+GGG + chr7.4:4053514-4053533 None:intergenic 50.0%
TTGGGGTTTCTACGGAGTAG+TGG + chr7.4:4052705-4052724 None:intergenic 50.0%
TTTCCCTGTGCCAATTTCGG+TGG + chr7.4:4053515-4053534 None:intergenic 50.0%
TTTGCCTGGTTCCTGTGATG+CGG + chr7.4:4054015-4054034 None:intergenic 50.0%
! ATTGGGGTGCCATCATTGGT+TGG - chr7.4:4052625-4052644 MS.gene072518:intron 50.0%
! CATGATTGGGGTGCCATCAT+TGG - chr7.4:4052621-4052640 MS.gene072518:intron 50.0%
! GACCAGTTTTCCGAGTTGTG+AGG + chr7.4:4054088-4054107 None:intergenic 50.0%
! GATGCCATGCATGCTGCTTA+TGG - chr7.4:4052738-4052757 MS.gene072518:intron 50.0%
! GGCATCAACGGTCCTGATTT+TGG + chr7.4:4052724-4052743 None:intergenic 50.0%
! TATCCATGGTGGGGGATTCA+AGG - chr7.4:4054706-4054725 MS.gene072518:CDS 50.0%
! TGAAGTGCGCCACTCCTTTT+TGG + chr7.4:4054763-4054782 None:intergenic 50.0%
!! CATCGGTGTCACCATAACCA+CGG + chr7.4:4052503-4052522 None:intergenic 50.0%
!! TTGCTTTTGGTCCGCATCAC+AGG - chr7.4:4054001-4054020 MS.gene072518:intron 50.0%
ACAGTTCGGGGAAGCCATGA+AGG + chr7.4:4052413-4052432 None:intergenic 55.0%
ATTGGGAGCTGATGGCACCA+TGG - chr7.4:4054600-4054619 MS.gene072518:CDS 55.0%
CTCCTGACACCTTACCCTCT+TGG - chr7.4:4054156-4054175 MS.gene072518:intron 55.0%
CTTCCTTGAATCCCCCACCA+TGG + chr7.4:4054712-4054731 None:intergenic 55.0%
GAGCTGATGGCACCATGGAA+TGG - chr7.4:4054605-4054624 MS.gene072518:CDS 55.0%
GCTGATGGCACCATGGAATG+GGG - chr7.4:4054607-4054626 MS.gene072518:CDS 55.0%
TTCATGGCTTCCCCGAACTG+TGG - chr7.4:4052412-4052431 MS.gene072518:CDS 55.0%
! AGCCAAGAGGGTAAGGTGTC+AGG + chr7.4:4054161-4054180 None:intergenic 55.0%
! CCCAAGGGAGAGTTTGGAAC+TGG - chr7.4:4054119-4054138 MS.gene072518:intron 55.0%
AGCAACAGCACGGTAGCCGA+GGG + chr7.4:4052472-4052491 None:intergenic 60.0%
AGTCTCAGGACACCACCACC+AGG - chr7.4:4053566-4053585 MS.gene072518:intron 60.0%
ATCCACTTGGGATGGCCTGG+TGG + chr7.4:4053584-4053603 None:intergenic 60.0%
GCTCCGGATCTCCGTGGTTA+TGG - chr7.4:4052489-4052508 MS.gene072518:CDS 60.0%
GGAGATCCGGAGCAACAGCA+CGG + chr7.4:4052482-4052501 None:intergenic 60.0%
TGGTCCGCATCACAGGAACC+AGG - chr7.4:4054008-4054027 MS.gene072518:intron 60.0%
!! TGGTGGTGGTGTCCTGAGAC+TGG + chr7.4:4053567-4053586 None:intergenic 60.0%
CACCACCAGGCCATCCCAAG+TGG - chr7.4:4053579-4053598 MS.gene072518:intron 65.0%
CACTTGGGATGGCCTGGTGG+TGG + chr7.4:4053581-4053600 None:intergenic 65.0%
GAGCAACAGCACGGTAGCCG+AGG + chr7.4:4052473-4052492 None:intergenic 65.0%
GCTGTTGCTCCGGATCTCCG+TGG - chr7.4:4052483-4052502 MS.gene072518:CDS 65.0%
! CGGCTACCGTGCTGTTGCTC+CGG - chr7.4:4052473-4052492 MS.gene072518:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 4052321 4054844 4052321 ID=MS.gene072518
chr7.4 mRNA 4052321 4054844 4052321 ID=MS.gene072518.t1;Parent=MS.gene072518
chr7.4 exon 4054377 4054844 4054377 ID=MS.gene072518.t1.exon1;Parent=MS.gene072518.t1
chr7.4 CDS 4054377 4054844 4054377 ID=cds.MS.gene072518.t1;Parent=MS.gene072518.t1
chr7.4 exon 4052898 4053142 4052898 ID=MS.gene072518.t1.exon2;Parent=MS.gene072518.t1
chr7.4 CDS 4052898 4053142 4052898 ID=cds.MS.gene072518.t1;Parent=MS.gene072518.t1
chr7.4 exon 4052321 4052567 4052321 ID=MS.gene072518.t1.exon3;Parent=MS.gene072518.t1
chr7.4 CDS 4052321 4052567 4052321 ID=cds.MS.gene072518.t1;Parent=MS.gene072518.t1
Gene Sequence

>MS.gene072518

ATGGAAGGAATAGAACACAGAACAGTGGAAGTAAATGGAATCAAAATGCATATTGCTGAAAAAGGAAAAGAAGGTCCTCTTGTCTTGTTCCTTCATGGCTTCCCCGAACTGTGGTATTCATGGCGCCATCAGATTGTAGCTCTCAGCTCCCTCGGCTACCGTGCTGTTGCTCCGGATCTCCGTGGTTATGGTGACACCGATGCTCCGTCTTCAGTTAGTAGCTACACAGGTTTTCATATAGTAGGTGACCTTATTGCACTTATAGATTTTCTGGGTGTTGATCAAGTATTTCTTGTGGCTCATGATTGGGGTGCCATCATTGGTTGGTATCTTTGTATGTTTCGCCCTGAAAGAATCAAAGCTTATGTTTGTCTCAGTGTTCCACTACTCCGTAGAAACCCCAAAATCAGGACCGTTGATGCCATGCATGCTGCTTATGGAGATGATTATTACATATGTAGATTTCAGGTTATTCTTTTTCTTTACTACCACTTTTCTACTTTTGTCTCTGTAGCCCCTAATTTACTTTAAGCAATCCCTAATATTTTATGACTCATGAAATATACAGGGTTAATTAAGTAAATGGTCCATCTAAATATTTAGAATTTTGTTTTTAGTCCCTATAAAATAAAATCACATTTTTTAGTCCCTATAAAATTTTTCATCAACATTTTTATTTCCTATAAAAAATTTCCATCAACATTTTTAGTCTTTGTCAAAAATATCCATCAACATTTTTGGTCCCTAAAATGCTTAAGGAAAATGTCACAGGGACTAAAAAGTGTGATTTTATTTTGTAGGGACTAAAAACAAAACTGTGAATATTTGTAGGGACTAAAAACTTAATTATATAGATGCAGGAGAGAGTAATACTTAATAACTAAATTCAGGGATTACTCTTATGATTTTAGTTTGAGTGGTGTTTGATGTGGGCTATTGACATGATACTGATACGCCTGTTTGGATAGATTTATTTGAGAGGATTTACGGGTTGTGAGATTGTTTAATATAATTAAGGAGGTTGTTTTGAGATGCTTATTTTCATAAGCTCTTCAAATAGCATGTGAAAATAACTTAAAACTTATATAAAAATAATTTGACTTTATTTTATCTTTTGCTATAAGCACTTGATTAAGTTTCCTTAAAAAAAGCACTTGATTAAGGTTTTTTTTGTTAAGAAGTCGATCTATCCCACCGAAATTGGCACAGGGAAAATAGAACCTGTCACCTTAAGAGAGATACTCCAGTCTCAGGACACCACCACCAGGCCATCCCAAGTGGATTTAACACTTGATTAACTTGTTTATTTAAGTAGAGTCTAAATCAAAAGAGGAAACCTTATAGTTGATCAGTTAATTCTAGAAGCAAGCATGACTCAACTTAATATAGAATGACATGTTGTGCATTTTGTTAGGGAGTAATATTGATTATTGAATACGTTAGGGTGAAGTTCTCTTATTTTGGGTCTGCATCAACTTTAGAATTGTATGACATCATAATGGTCATGAATGTAGAAGTTAATCTGTTTTCCTTTCTTTTAGCTACATATCATTCCTAAAGTATTACCCTACTCAGATTGAATCGTCTCGTGAAGCTCCAATATAATGTTTTGAAACAGAGTTCTTTGTTTATCTAAAATGAAGTGGAAAGTTGCTGTAATGATAGATCTGAATAACATAATTGCTTTTGGTCCGCATCACAGGAACCAGGCAAAATGGAAGCTGAGATGGCTGAAGTTGGCACTGCATATGTGATGAAAAGTACCCTCACAACTCGGAAAACTGGTCCTCCAATATTTCCCAAGGGAGAGTTTGGAACTGGATTCAACTCGGATACTCCTGACACCTTACCCTCTTGGCTTACAGAAGAAGACCTTGCTTATTTTGTCTCCAAATTTGAGAAAACAGGCTTCACTGCAGCATTGAACTACTATAGAAACTTGAACTCGTAATCTTTTGATTCTTTGTGTTATCTCTGTTTGTTTTCCACAAATATATGTTGACAATTCTTTTTGGTAAAATGTTTTAACAACATGACAATAATCTATGCGGCATTAACATTTCAGTTTGAAGACGTGCCCGGTGTTTGATACGTGTTGATATCCGACACCGACACATGTTATATTCAATCACTTCCATTTTTAAAACTGTTATTGGTATCTACTTGTCAATGTCGCGTCCAATGTTTGTGTTTAGCGTTGTTTTCAATGTATGTGTTAGTGTTTCATAAACAGAGATCCCAATTCTAATGAAAGATGCATTATTACTTGTATTGTAGAAATTGGGAGCTGATGGCACCATGGAATGGGGTGAAAATCAAGGTGCCTGTGAAATTCATTACAGGTGATTTAGACAGTGTATACACCTCACTAAACATGAAGGAGTATATCCATGGTGGGGGATTCAAGGAAGATGTGCCCAATCTGGAAGAAGTGATTATCCAAAAAGGAGTGGCGCACTTCAACAATCAAGAAGCAGCAGAGGAAATAAGTAATCACATTTATGAATTCATCAAAAAGTTCTGA

Protein sequence

>MS.gene072518.t1

MEGIEHRTVEVNGIKMHIAEKGKEGPLVLFLHGFPELWYSWRHQIVALSSLGYRAVAPDLRGYGDTDAPSSVSSYTGFHIVGDLIALIDFLGVDQVFLVAHDWGAIIGWYLCMFRPERIKAYVCLSVPLLRRNPKIRTVDAMHAAYGDDYYICRFQEPGKMEAEMAEVGTAYVMKSTLTTRKTGPPIFPKGEFGTGFNSDTPDTLPSWLTEEDLAYFVSKFEKTGFTAALNYYRNLNSNWELMAPWNGVKIKVPVKFITGDLDSVYTSLNMKEYIHGGGFKEDVPNLEEVIIQKGVAHFNNQEAAEEISNHIYEFIKKF