Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072518.t1 | XP_003626244.1 | 97.2 | 319 | 9 | 0 | 1 | 319 | 1 | 319 | 2.00E-184 | 654.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072518.t1 | I6YGS0 | 34.2 | 319 | 192 | 6 | 7 | 316 | 7 | 316 | 1.0e-51 | 205.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072518.t1 | A2Q321 | 97.2 | 319 | 9 | 0 | 1 | 319 | 1 | 319 | 1.5e-184 | 654.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049794 | MS.gene072518 | -0.804245 | 2.37E-49 | -1.69E-46 |
MS.gene050354 | MS.gene072518 | 0.819667 | 1.03E-52 | -1.69E-46 |
MS.gene050926 | MS.gene072518 | 0.986846 | 3.60E-168 | -1.69E-46 |
MS.gene051694 | MS.gene072518 | -0.807672 | 4.51E-50 | -1.69E-46 |
MS.gene054435 | MS.gene072518 | 0.990788 | 2.50E-184 | -1.69E-46 |
MS.gene054437 | MS.gene072518 | 0.972891 | 1.64E-135 | -1.69E-46 |
MS.gene054447 | MS.gene072518 | 0.976858 | 1.23E-142 | -1.69E-46 |
MS.gene054927 | MS.gene072518 | -0.800047 | 1.73E-48 | -1.69E-46 |
MS.gene05883 | MS.gene072518 | -0.812852 | 3.44E-51 | -1.69E-46 |
MS.gene060482 | MS.gene072518 | -0.80201 | 6.87E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene072518 | MS.gene07001 | PPI |
MS.gene76453 | MS.gene072518 | PPI |
MS.gene025707 | MS.gene072518 | PPI |
MS.gene035373 | MS.gene072518 | PPI |
MS.gene072518 | MS.gene066361 | PPI |
MS.gene072518 | MS.gene071500 | PPI |
MS.gene072518 | MS.gene041604 | PPI |
MS.gene072518 | MS.gene22955 | PPI |
MS.gene77823 | MS.gene072518 | PPI |
MS.gene035367 | MS.gene072518 | PPI |
MS.gene071504 | MS.gene072518 | PPI |
MS.gene012063 | MS.gene072518 | PPI |
MS.gene071502 | MS.gene072518 | PPI |
MS.gene066360 | MS.gene072518 | PPI |
MS.gene89620 | MS.gene072518 | PPI |
MS.gene035369 | MS.gene072518 | PPI |
MS.gene072518 | MS.gene035371 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072518.t1 | MTR_7g113030 | 97.179 | 319 | 9 | 0 | 1 | 319 | 1 | 319 | 0.0 | 649 |
MS.gene072518.t1 | MTR_7g113050 | 94.357 | 319 | 18 | 0 | 1 | 319 | 1 | 319 | 0.0 | 633 |
MS.gene072518.t1 | MTR_7g112615 | 91.850 | 319 | 26 | 0 | 1 | 319 | 1 | 319 | 0.0 | 616 |
MS.gene072518.t1 | MTR_7g112620 | 86.834 | 319 | 42 | 0 | 1 | 319 | 1 | 319 | 0.0 | 589 |
MS.gene072518.t1 | MTR_7g113020 | 86.207 | 319 | 44 | 0 | 1 | 319 | 1 | 319 | 0.0 | 587 |
MS.gene072518.t1 | MTR_7g112960 | 75.862 | 319 | 77 | 0 | 1 | 319 | 1 | 319 | 0.0 | 520 |
MS.gene072518.t1 | MTR_7g112963 | 76.176 | 319 | 76 | 0 | 1 | 319 | 1 | 319 | 0.0 | 513 |
MS.gene072518.t1 | MTR_7g112970 | 75.549 | 319 | 75 | 1 | 1 | 319 | 1 | 316 | 0.0 | 511 |
MS.gene072518.t1 | MTR_4g005160 | 73.684 | 323 | 80 | 3 | 1 | 319 | 1 | 322 | 0.0 | 508 |
MS.gene072518.t1 | MTR_7g113050 | 93.249 | 237 | 16 | 0 | 1 | 237 | 1 | 237 | 3.23e-169 | 469 |
MS.gene072518.t1 | MTR_7g112615 | 91.561 | 237 | 20 | 0 | 1 | 237 | 1 | 237 | 4.68e-166 | 461 |
MS.gene072518.t1 | MTR_7g113010 | 72.242 | 281 | 78 | 0 | 1 | 281 | 1 | 281 | 7.64e-153 | 441 |
MS.gene072518.t1 | MTR_4g120240 | 61.059 | 321 | 121 | 3 | 1 | 319 | 37 | 355 | 7.11e-145 | 412 |
MS.gene072518.t1 | MTR_7g108825 | 60.815 | 319 | 123 | 2 | 1 | 319 | 1 | 317 | 8.07e-141 | 400 |
MS.gene072518.t1 | MTR_8g076680 | 48.297 | 323 | 155 | 4 | 1 | 319 | 3 | 317 | 2.37e-106 | 313 |
MS.gene072518.t1 | MTR_7g112615 | 90.566 | 159 | 15 | 0 | 1 | 159 | 1 | 159 | 3.48e-106 | 307 |
MS.gene072518.t1 | MTR_7g108825 | 59.494 | 237 | 94 | 2 | 1 | 237 | 1 | 235 | 5.34e-98 | 289 |
MS.gene072518.t1 | MTR_7g112910 | 58.635 | 249 | 48 | 5 | 72 | 319 | 1 | 195 | 1.93e-90 | 268 |
MS.gene072518.t1 | MTR_1g083480 | 78.616 | 159 | 30 | 2 | 1 | 156 | 1 | 158 | 5.74e-90 | 266 |
MS.gene072518.t1 | MTR_8g076680 | 49.378 | 241 | 112 | 3 | 1 | 237 | 3 | 237 | 3.57e-81 | 246 |
MS.gene072518.t1 | MTR_2g090240 | 36.760 | 321 | 189 | 6 | 1 | 318 | 1 | 310 | 1.06e-66 | 212 |
MS.gene072518.t1 | MTR_4g089060 | 36.760 | 321 | 188 | 6 | 1 | 318 | 1 | 309 | 2.03e-65 | 208 |
MS.gene072518.t1 | MTR_3g024250 | 86.916 | 107 | 14 | 0 | 46 | 152 | 1 | 107 | 3.39e-65 | 202 |
MS.gene072518.t1 | MTR_2g090245 | 35.826 | 321 | 192 | 7 | 1 | 318 | 1 | 310 | 6.64e-63 | 202 |
MS.gene072518.t1 | MTR_4g089040 | 36.137 | 321 | 190 | 6 | 1 | 318 | 1 | 309 | 6.76e-63 | 202 |
MS.gene072518.t1 | MTR_4g089060 | 34.195 | 348 | 187 | 7 | 1 | 318 | 1 | 336 | 2.77e-60 | 196 |
MS.gene072518.t1 | MTR_4g089060 | 39.056 | 233 | 133 | 3 | 1 | 231 | 1 | 226 | 8.41e-54 | 176 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072518.t1 | AT3G05600 | 60.185 | 324 | 124 | 4 | 1 | 319 | 1 | 324 | 2.43e-147 | 417 |
MS.gene072518.t1 | AT4G02340 | 57.188 | 320 | 132 | 3 | 1 | 319 | 1 | 316 | 5.99e-138 | 394 |
MS.gene072518.t1 | AT2G26740 | 61.180 | 322 | 118 | 4 | 4 | 319 | 1 | 321 | 8.06e-130 | 373 |
MS.gene072518.t1 | AT4G15960 | 52.615 | 325 | 147 | 3 | 1 | 319 | 51 | 374 | 1.36e-124 | 362 |
MS.gene072518.t1 | AT2G26750 | 58.567 | 321 | 127 | 4 | 4 | 319 | 1 | 320 | 2.51e-124 | 359 |
MS.gene072518.t1 | AT4G15955 | 50.613 | 326 | 123 | 4 | 5 | 319 | 6 | 304 | 9.91e-110 | 321 |
MS.gene072518.t1 | AT3G05600 | 61.157 | 242 | 89 | 4 | 1 | 237 | 1 | 242 | 6.76e-108 | 314 |
MS.gene072518.t1 | AT3G51000 | 48.428 | 318 | 159 | 5 | 4 | 319 | 5 | 319 | 3.98e-103 | 305 |
MS.gene072518.t1 | AT4G15955 | 60.920 | 174 | 58 | 2 | 5 | 168 | 6 | 179 | 8.75e-72 | 220 |
MS.gene072518.t1 | AT4G15955 | 61.212 | 165 | 54 | 2 | 5 | 159 | 6 | 170 | 1.26e-67 | 209 |
Find 84 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATAAGCTTTGATTCTTTC+AGG | 0.126719 | 7.4:+4054477 | None:intergenic |
GGCATCAACGGTCCTGATTT+TGG | 0.162298 | 7.4:+4054422 | None:intergenic |
CCTCTTGTCTTGTTCCTTCA+TGG | 0.187509 | 7.4:-4054747 | MS.gene072518:CDS |
TTATTACATATGTAGATTTC+AGG | 0.264776 | 7.4:-4054376 | MS.gene072518:intron |
AAAATGCATATTGCTGAAAA+AGG | 0.266560 | 7.4:-4054780 | MS.gene072518:CDS |
AACTCTCCCTTGGGAAATAT+TGG | 0.280214 | 7.4:+4053033 | None:intergenic |
ATATTTCCCAAGGGAGAGTT+TGG | 0.305783 | 7.4:-4053030 | MS.gene072518:CDS |
CGCCATGAATACCACAGTTC+GGG | 0.324950 | 7.4:+4054720 | None:intergenic |
CACAGAACAGTGGAAGTAAA+TGG | 0.328559 | 7.4:-4054807 | MS.gene072518:CDS |
ATTTCTTGTGGCTCATGATT+GGG | 0.336317 | 7.4:-4054535 | MS.gene072518:CDS |
AGCTGATGGCACCATGGAAT+GGG | 0.338259 | 7.4:-4052537 | MS.gene072518:CDS |
TATTTCTTGTGGCTCATGAT+TGG | 0.353373 | 7.4:-4054536 | MS.gene072518:CDS |
GTCTCCAAATTTGAGAAAAC+AGG | 0.355343 | 7.4:-4052937 | MS.gene072518:CDS |
GATAATCACTTCTTCCAGAT+TGG | 0.362380 | 7.4:+4052405 | None:intergenic |
CATGATTGGGGTGCCATCAT+TGG | 0.372270 | 7.4:-4054522 | MS.gene072518:CDS |
GATGCCATGCATGCTGCTTA+TGG | 0.379998 | 7.4:-4054405 | MS.gene072518:CDS |
ACCCTCACAACTCGGAAAAC+TGG | 0.389484 | 7.4:-4053060 | MS.gene072518:CDS |
CCCAAGGGAGAGTTTGGAAC+TGG | 0.389949 | 7.4:-4053024 | MS.gene072518:CDS |
AGCCAAGAGGGTAAGGTGTC+AGG | 0.390169 | 7.4:+4052985 | None:intergenic |
ATCACAGGAACCAGGCAAAA+TGG | 0.395142 | 7.4:-4053127 | MS.gene072518:intron |
GCTCCGGATCTCCGTGGTTA+TGG | 0.399328 | 7.4:-4054654 | MS.gene072518:CDS |
TTACTTGTATTGTAGAAATT+GGG | 0.399713 | 7.4:-4052560 | MS.gene072518:intron |
TCCCCGAACTGTGGTATTCA+TGG | 0.400391 | 7.4:-4054722 | MS.gene072518:CDS |
GAAGAAGTGATTATCCAAAA+AGG | 0.403789 | 7.4:-4052397 | MS.gene072518:CDS |
CTCCTGACACCTTACCCTCT+TGG | 0.407073 | 7.4:-4052987 | MS.gene072518:CDS |
CATAAGCTTTGATTCTTTCA+GGG | 0.418162 | 7.4:+4054478 | None:intergenic |
GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7.4:-4052502 | MS.gene072518:CDS |
CAAGGAAGATGTGCCCAATC+TGG | 0.434486 | 7.4:-4052419 | MS.gene072518:CDS |
TCCGTAGAAACCCCAAAATC+AGG | 0.443771 | 7.4:-4054434 | MS.gene072518:CDS |
ATAATCACTTCTTCCAGATT+GGG | 0.447163 | 7.4:+4052406 | None:intergenic |
TCCAGTTCCAAACTCTCCCT+TGG | 0.447351 | 7.4:+4053023 | None:intergenic |
CGGCTACCGTGCTGTTGCTC+CGG | 0.456232 | 7.4:-4054670 | MS.gene072518:CDS |
TTCTGTAAGCCAAGAGGGTA+AGG | 0.457253 | 7.4:+4052978 | None:intergenic |
GAAAATCTATAAGTGCAATA+AGG | 0.461083 | 7.4:+4054574 | None:intergenic |
GCGCCATGAATACCACAGTT+CGG | 0.461173 | 7.4:+4054719 | None:intergenic |
GAGCTGATGGCACCATGGAA+TGG | 0.461653 | 7.4:-4052538 | MS.gene072518:CDS |
TCACCATAACCACGGAGATC+CGG | 0.490155 | 7.4:+4054651 | None:intergenic |
CCAGTTCCAAACTCTCCCTT+GGG | 0.501905 | 7.4:+4053024 | None:intergenic |
ACAAAGATACCAACCAATGA+TGG | 0.534758 | 7.4:+4054509 | None:intergenic |
AGGCAAAATGGAAGCTGAGA+TGG | 0.540634 | 7.4:-4053115 | MS.gene072518:CDS |
ATGGAATGGGGTGAAAATCA+AGG | 0.540835 | 7.4:-4052524 | MS.gene072518:CDS |
TTTCTTGTGGCTCATGATTG+GGG | 0.543062 | 7.4:-4054534 | MS.gene072518:CDS |
TCTCCCTTGGGAAATATTGG+AGG | 0.546141 | 7.4:+4053036 | None:intergenic |
TTGGGGTTTCTACGGAGTAG+TGG | 0.547389 | 7.4:+4054441 | None:intergenic |
ATTGTAGCTCTCAGCTCCCT+CGG | 0.548619 | 7.4:-4054690 | MS.gene072518:CDS |
ATCTCCATAAGCAGCATGCA+TGG | 0.554133 | 7.4:+4054401 | None:intergenic |
TCTTCTTCTGTAAGCCAAGA+GGG | 0.563661 | 7.4:+4052973 | None:intergenic |
GAGCAACAGCACGGTAGCCG+AGG | 0.563671 | 7.4:+4054673 | None:intergenic |
TCACCTGTAATGAATTTCAC+AGG | 0.570947 | 7.4:+4052499 | None:intergenic |
AGCAACAGCACGGTAGCCGA+GGG | 0.572130 | 7.4:+4054674 | None:intergenic |
ATTGGGGTGCCATCATTGGT+TGG | 0.574625 | 7.4:-4054518 | MS.gene072518:CDS |
ACAGTTCGGGGAAGCCATGA+AGG | 0.577839 | 7.4:+4054733 | None:intergenic |
GAAGGAGTATATCCATGGTG+GGG | 0.578871 | 7.4:-4052446 | MS.gene072518:CDS |
TGAAGGAGTATATCCATGGT+GGG | 0.583874 | 7.4:-4052447 | MS.gene072518:CDS |
TGGTCCTCCAATATTTCCCA+AGG | 0.588717 | 7.4:-4053040 | MS.gene072518:CDS |
GAAGCTGAGATGGCTGAAGT+TGG | 0.590883 | 7.4:-4053105 | MS.gene072518:CDS |
AGCTGAGAGCTACAATCTGA+TGG | 0.590990 | 7.4:+4054697 | None:intergenic |
AGCAGCATGCATGGCATCAA+CGG | 0.592010 | 7.4:+4054410 | None:intergenic |
TGGTCCGCATCACAGGAACC+AGG | 0.594410 | 7.4:-4053135 | MS.gene072518:intron |
TCTTCAGTTAGTAGCTACAC+AGG | 0.594878 | 7.4:-4054615 | MS.gene072518:CDS |
AAGGAGTATATCCATGGTGG+GGG | 0.600787 | 7.4:-4052445 | MS.gene072518:CDS |
TTCATGGCTTCCCCGAACTG+TGG | 0.605850 | 7.4:-4054731 | MS.gene072518:CDS |
TGTTGATCAAGTATTTCTTG+TGG | 0.608957 | 7.4:-4054547 | MS.gene072518:CDS |
CAACAATCAAGAAGCAGCAG+AGG | 0.610084 | 7.4:-4052362 | MS.gene072518:CDS |
ACTAACTGAAGACGGAGCAT+CGG | 0.615174 | 7.4:+4054626 | None:intergenic |
CCATGAAGGAACAAGACAAG+AGG | 0.618716 | 7.4:+4054747 | None:intergenic |
TTGTAGAAATTGGGAGCTGA+TGG | 0.619295 | 7.4:-4052551 | MS.gene072518:intron |
AACATGAAGGAGTATATCCA+TGG | 0.620148 | 7.4:-4052451 | MS.gene072518:CDS |
ATACTCCTTCATGTTTAGTG+AGG | 0.623538 | 7.4:+4052459 | None:intergenic |
GCTGATGGCACCATGGAATG+GGG | 0.628565 | 7.4:-4052536 | MS.gene072518:CDS |
GTTTGGAACTGGATTCAACT+CGG | 0.629425 | 7.4:-4053013 | MS.gene072518:CDS |
ATTTGGAGACAAAATAAGCA+AGG | 0.634682 | 7.4:+4052950 | None:intergenic |
ATGAAGGAGTATATCCATGG+TGG | 0.640343 | 7.4:-4052448 | MS.gene072518:CDS |
TGAAAAGTACCCTCACAACT+CGG | 0.640586 | 7.4:-4053068 | MS.gene072518:CDS |
ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 7.4:-4052543 | MS.gene072518:CDS |
GTCTTCTTCTGTAAGCCAAG+AGG | 0.650739 | 7.4:+4052972 | None:intergenic |
GTGTAGCTACTAACTGAAGA+CGG | 0.652352 | 7.4:+4054618 | None:intergenic |
ATACACCTCACTAAACATGA+AGG | 0.662683 | 7.4:-4052464 | MS.gene072518:CDS |
GGAGATCCGGAGCAACAGCA+CGG | 0.668358 | 7.4:+4054664 | None:intergenic |
AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.4:-4054817 | MS.gene072518:CDS |
GCCATGAATACCACAGTTCG+GGG | 0.692309 | 7.4:+4054721 | None:intergenic |
GGTCCTCCAATATTTCCCAA+GGG | 0.706108 | 7.4:-4053039 | MS.gene072518:CDS |
GCTGTTGCTCCGGATCTCCG+TGG | 0.713696 | 7.4:-4054660 | MS.gene072518:CDS |
CATCGGTGTCACCATAACCA+CGG | 0.714613 | 7.4:+4054643 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATGTGATTTTATTTTAT+AGG | + | chr7.4:4052943-4052962 | None:intergenic | 10.0% |
!!! | AAATGTGATTTTATTTTATA+GGG | + | chr7.4:4052942-4052961 | None:intergenic | 10.0% |
!! | AATACTTAATAACTAAATTC+AGG | - | chr7.4:4053189-4053208 | MS.gene072518:intron | 15.0% |
!! | ATACTTAATAACTAAATTCA+GGG | - | chr7.4:4053190-4053209 | MS.gene072518:intron | 15.0% |
!! | ATTGTTTAATATAATTAAGG+AGG | - | chr7.4:4053319-4053338 | MS.gene072518:intron | 15.0% |
!! | CAAAATTCTAAATATTTAGA+TGG | + | chr7.4:4052911-4052930 | None:intergenic | 15.0% |
!! | GAGATTGTTTAATATAATTA+AGG | - | chr7.4:4053316-4053335 | MS.gene072518:intron | 15.0% |
!!! | ATGTTGATGAAAAATTTTAT+AGG | + | chr7.4:4052972-4052991 | None:intergenic | 15.0% |
!!! | TGTTGATGAAAAATTTTATA+GGG | + | chr7.4:4052971-4052990 | None:intergenic | 15.0% |
!! | AAACTTAATTATATAGATGC+AGG | - | chr7.4:4053159-4053178 | MS.gene072518:intron | 20.0% |
!! | ATTACTTGTATTGTAGAAAT+TGG | - | chr7.4:4054582-4054601 | MS.gene072518:CDS | 20.0% |
!! | ATTGATTATTGAATACGTTA+GGG | - | chr7.4:4053743-4053762 | MS.gene072518:intron | 20.0% |
!! | TCATGAGTCATAAAATATTA+GGG | + | chr7.4:4052860-4052879 | None:intergenic | 20.0% |
!! | TCTGTTTCAAAACATTATAT+TGG | + | chr7.4:4053920-4053939 | None:intergenic | 20.0% |
!! | TTACTTGTATTGTAGAAATT+GGG | - | chr7.4:4054583-4054602 | MS.gene072518:CDS | 20.0% |
!! | TTATTACATATGTAGATTTC+AGG | - | chr7.4:4052767-4052786 | MS.gene072518:intron | 20.0% |
!! | TTCATGAGTCATAAAATATT+AGG | + | chr7.4:4052861-4052880 | None:intergenic | 20.0% |
!!! | AAAATATCCATCAACATTTT+TGG | - | chr7.4:4053039-4053058 | MS.gene072518:CDS | 20.0% |
!!! | AAAGTGTGATTTTATTTTGT+AGG | - | chr7.4:4053099-4053118 | MS.gene072518:CDS | 20.0% |
!!! | AAGTGTGATTTTATTTTGTA+GGG | - | chr7.4:4053100-4053119 | MS.gene072518:CDS | 20.0% |
!!! | ACCAATAACAGTTTTAAAAA+TGG | + | chr7.4:4054458-4054477 | None:intergenic | 20.0% |
!!! | TATATGTTGACAATTCTTTT+TGG | - | chr7.4:4054313-4054332 | MS.gene072518:intron | 20.0% |
!!! | TATTGATTATTGAATACGTT+AGG | - | chr7.4:4053742-4053761 | MS.gene072518:intron | 20.0% |
!!! | TCCATTTTTAAAACTGTTAT+TGG | - | chr7.4:4054454-4054473 | MS.gene072518:CDS | 20.0% |
!!! | TGTTGATGGAAATTTTTTAT+AGG | + | chr7.4:4053003-4053022 | None:intergenic | 20.0% |
!!! | TTAAAAAAAGCACTTGATTA+AGG | - | chr7.4:4053462-4053481 | MS.gene072518:intron | 20.0% |
!!! | TTAATCAAGTGCTTTTTTTA+AGG | + | chr7.4:4053463-4053482 | None:intergenic | 20.0% |
!!! | TTTGTTTATCTAAAATGAAG+TGG | - | chr7.4:4053944-4053963 | MS.gene072518:intron | 20.0% |
! | AAAATGCATATTGCTGAAAA+AGG | - | chr7.4:4052363-4052382 | MS.gene072518:CDS | 25.0% |
! | AATGCATCTTTCATTAGAAT+TGG | + | chr7.4:4054562-4054581 | None:intergenic | 25.0% |
! | ACAAAACTGTGAATATTTGT+AGG | - | chr7.4:4053130-4053149 | MS.gene072518:intron | 25.0% |
! | ACAAAGACTAAAAATGTTGA+TGG | + | chr7.4:4053017-4053036 | None:intergenic | 25.0% |
! | AGAATTGTATGACATCATAA+TGG | - | chr7.4:4053800-4053819 | MS.gene072518:intron | 25.0% |
! | ATGATATGTAGCTAAAAGAA+AGG | + | chr7.4:4053853-4053872 | None:intergenic | 25.0% |
! | ATGCATCTTTCATTAGAATT+GGG | + | chr7.4:4054561-4054580 | None:intergenic | 25.0% |
! | ATTTATTTGAGAGGATTTAC+GGG | - | chr7.4:4053289-4053308 | MS.gene072518:intron | 25.0% |
! | CAAAACTGTGAATATTTGTA+GGG | - | chr7.4:4053131-4053150 | MS.gene072518:intron | 25.0% |
! | GAAAATCTATAAGTGCAATA+AGG | + | chr7.4:4052572-4052591 | None:intergenic | 25.0% |
! | GAATTAACTGATCAACTATA+AGG | + | chr7.4:4053660-4053679 | None:intergenic | 25.0% |
! | GAATTGTCAACATATATTTG+TGG | + | chr7.4:4054309-4054328 | None:intergenic | 25.0% |
! | GATTGCTTAAAGTAAATTAG+GGG | + | chr7.4:4052838-4052857 | None:intergenic | 25.0% |
! | GATTTATTTGAGAGGATTTA+CGG | - | chr7.4:4053288-4053307 | MS.gene072518:intron | 25.0% |
! | GGATTGCTTAAAGTAAATTA+GGG | + | chr7.4:4052839-4052858 | None:intergenic | 25.0% |
! | TACAGGGTTAATTAAGTAAA+TGG | - | chr7.4:4052884-4052903 | MS.gene072518:intron | 25.0% |
! | TATGACTCATGAAATATACA+GGG | - | chr7.4:4052868-4052887 | MS.gene072518:intron | 25.0% |
! | TCAAATAAATCTATCCAAAC+AGG | + | chr7.4:4053279-4053298 | None:intergenic | 25.0% |
! | TGATTGAATATAACATGTGT+CGG | + | chr7.4:4054432-4054451 | None:intergenic | 25.0% |
! | TTATGACTCATGAAATATAC+AGG | - | chr7.4:4052867-4052886 | MS.gene072518:intron | 25.0% |
! | TTTGGATAGATTTATTTGAG+AGG | - | chr7.4:4053280-4053299 | MS.gene072518:intron | 25.0% |
!! | ACATTTTCCTTAAGCATTTT+AGG | + | chr7.4:4053067-4053086 | None:intergenic | 25.0% |
!! | ATTGCACTTATAGATTTTCT+GGG | - | chr7.4:4052573-4052592 | MS.gene072518:intron | 25.0% |
!! | CATTTTCCTTAAGCATTTTA+GGG | + | chr7.4:4053066-4053085 | None:intergenic | 25.0% |
!! | CTGAATAACATAATTGCTTT+TGG | - | chr7.4:4053988-4054007 | MS.gene072518:intron | 25.0% |
!! | TATTGCACTTATAGATTTTC+TGG | - | chr7.4:4052572-4052591 | MS.gene072518:intron | 25.0% |
!!! | TCTTATGATTTTAGTTTGAG+TGG | - | chr7.4:4053218-4053237 | MS.gene072518:intron | 25.0% |
AATCAAGTGTTAAATCCACT+TGG | + | chr7.4:4053597-4053616 | None:intergenic | 30.0% | |
AGTAGAGTCTAAATCAAAAG+AGG | - | chr7.4:4053631-4053650 | MS.gene072518:intron | 30.0% | |
ATAATCACTTCTTCCAGATT+GGG | + | chr7.4:4054740-4054759 | None:intergenic | 30.0% | |
ATCAAGTGTTAAATCCACTT+GGG | + | chr7.4:4053596-4053615 | None:intergenic | 30.0% | |
ATTGCTGAAAAAGGAAAAGA+AGG | - | chr7.4:4052372-4052391 | MS.gene072518:CDS | 30.0% | |
ATTTGGAGACAAAATAAGCA+AGG | + | chr7.4:4054196-4054215 | None:intergenic | 30.0% | |
CAACATGACAATAATCTATG+CGG | - | chr7.4:4054349-4054368 | MS.gene072518:intron | 30.0% | |
GAAGAAGTGATTATCCAAAA+AGG | - | chr7.4:4054746-4054765 | MS.gene072518:CDS | 30.0% | |
GGGATTGCTTAAAGTAAATT+AGG | + | chr7.4:4052840-4052859 | None:intergenic | 30.0% | |
TGTTGATCAAGTATTTCTTG+TGG | - | chr7.4:4052596-4052615 | MS.gene072518:intron | 30.0% | |
! | ACATAAGCTTTGATTCTTTC+AGG | + | chr7.4:4052669-4052688 | None:intergenic | 30.0% |
! | ACATGTTGTGCATTTTGTTA+GGG | - | chr7.4:4053714-4053733 | MS.gene072518:intron | 30.0% |
! | CATAAGCTTTGATTCTTTCA+GGG | + | chr7.4:4052668-4052687 | None:intergenic | 30.0% |
! | TACACAGGTTTTCATATAGT+AGG | - | chr7.4:4052543-4052562 | MS.gene072518:CDS | 30.0% |
ACAAAGATACCAACCAATGA+TGG | + | chr7.4:4052637-4052656 | None:intergenic | 35.0% | |
ACAACGCTAAACACAAACAT+TGG | + | chr7.4:4054502-4054521 | None:intergenic | 35.0% | |
AGTGATTATCCAAAAAGGAG+TGG | - | chr7.4:4054751-4054770 | MS.gene072518:CDS | 35.0% | |
ATACACCTCACTAAACATGA+AGG | - | chr7.4:4054679-4054698 | MS.gene072518:CDS | 35.0% | |
ATACTCCTTCATGTTTAGTG+AGG | + | chr7.4:4054687-4054706 | None:intergenic | 35.0% | |
ATGCTTAAGGAAAATGTCAC+AGG | - | chr7.4:4053070-4053089 | MS.gene072518:CDS | 35.0% | |
ATTTCTTGTGGCTCATGATT+GGG | - | chr7.4:4052608-4052627 | MS.gene072518:intron | 35.0% | |
CAGAGACAAAAGTAGAAAAG+TGG | + | chr7.4:4052812-4052831 | None:intergenic | 35.0% | |
GATAATCACTTCTTCCAGAT+TGG | + | chr7.4:4054741-4054760 | None:intergenic | 35.0% | |
GTCTCCAAATTTGAGAAAAC+AGG | - | chr7.4:4054206-4054225 | MS.gene072518:intron | 35.0% | |
TATCAACACGTATCAAACAC+CGG | + | chr7.4:4054402-4054421 | None:intergenic | 35.0% | |
TATTTCTTGTGGCTCATGAT+TGG | - | chr7.4:4052607-4052626 | MS.gene072518:intron | 35.0% | |
TCACCTGTAATGAATTTCAC+AGG | + | chr7.4:4054647-4054666 | None:intergenic | 35.0% | |
TCTGAGTAGGGTAATACTTT+AGG | + | chr7.4:4053877-4053896 | None:intergenic | 35.0% | |
TGCTTAAGGAAAATGTCACA+GGG | - | chr7.4:4053071-4053090 | MS.gene072518:CDS | 35.0% | |
TTAGGGACCAAAAATGTTGA+TGG | + | chr7.4:4053049-4053068 | None:intergenic | 35.0% | |
TTTGGTCCCTAAAATGCTTA+AGG | - | chr7.4:4053057-4053076 | MS.gene072518:CDS | 35.0% | |
! | AACATGAAGGAGTATATCCA+TGG | - | chr7.4:4054692-4054711 | MS.gene072518:CDS | 35.0% |
! | AATATAACATGTGTCGGTGT+CGG | + | chr7.4:4054426-4054445 | None:intergenic | 35.0% |
! | GAAGCCTGTTTTCTCAAATT+TGG | + | chr7.4:4054213-4054232 | None:intergenic | 35.0% |
! | GACATGTTGTGCATTTTGTT+AGG | - | chr7.4:4053713-4053732 | MS.gene072518:intron | 35.0% |
! | TATTTTCCCTGTGCCAATTT+CGG | + | chr7.4:4053518-4053537 | None:intergenic | 35.0% |
!! | AGGGTGAAGTTCTCTTATTT+TGG | - | chr7.4:4053762-4053781 | MS.gene072518:intron | 35.0% |
!!! | GGGTGAAGTTCTCTTATTTT+GGG | - | chr7.4:4053763-4053782 | MS.gene072518:intron | 35.0% |
AACTCTCCCTTGGGAAATAT+TGG | + | chr7.4:4054113-4054132 | None:intergenic | 40.0% | |
AGGAATAGAACACAGAACAG+TGG | - | chr7.4:4052326-4052345 | MS.gene072518:CDS | 40.0% | |
AGTATCTCTCTTAAGGTGAC+AGG | + | chr7.4:4053544-4053563 | None:intergenic | 40.0% | |
AGTGTTAAATCCACTTGGGA+TGG | + | chr7.4:4053592-4053611 | None:intergenic | 40.0% | |
AGTTTGAGTGGTGTTTGATG+TGG | - | chr7.4:4053230-4053249 | MS.gene072518:intron | 40.0% | |
ATATTTCCCAAGGGAGAGTT+TGG | - | chr7.4:4054113-4054132 | MS.gene072518:intron | 40.0% | |
ATCAACACGTATCAAACACC+GGG | + | chr7.4:4054401-4054420 | None:intergenic | 40.0% | |
ATGATACTGATACGCCTGTT+TGG | - | chr7.4:4053262-4053281 | MS.gene072518:intron | 40.0% | |
ATGGAATGGGGTGAAAATCA+AGG | - | chr7.4:4054619-4054638 | MS.gene072518:CDS | 40.0% | |
CACAGAACAGTGGAAGTAAA+TGG | - | chr7.4:4052336-4052355 | MS.gene072518:CDS | 40.0% | |
GAGACGATTCAATCTGAGTA+GGG | + | chr7.4:4053889-4053908 | None:intergenic | 40.0% | |
GTGCCTGTGAAATTCATTAC+AGG | - | chr7.4:4054641-4054660 | MS.gene072518:CDS | 40.0% | |
GTGTAGCTACTAACTGAAGA+CGG | + | chr7.4:4052528-4052547 | None:intergenic | 40.0% | |
GTTTGAGTGGTGTTTGATGT+GGG | - | chr7.4:4053231-4053250 | MS.gene072518:intron | 40.0% | |
TCTTCAGTTAGTAGCTACAC+AGG | - | chr7.4:4052528-4052547 | MS.gene072518:CDS | 40.0% | |
TCTTCTTCTGTAAGCCAAGA+GGG | + | chr7.4:4054173-4054192 | None:intergenic | 40.0% | |
TTGTAGAAATTGGGAGCTGA+TGG | - | chr7.4:4054592-4054611 | MS.gene072518:CDS | 40.0% | |
TTTCTTGTGGCTCATGATTG+GGG | - | chr7.4:4052609-4052628 | MS.gene072518:intron | 40.0% | |
! | AGACTGGAGTATCTCTCTTA+AGG | + | chr7.4:4053551-4053570 | None:intergenic | 40.0% |
! | ATGAAGGAGTATATCCATGG+TGG | - | chr7.4:4054695-4054714 | MS.gene072518:CDS | 40.0% |
! | GTTTGGAACTGGATTCAACT+CGG | - | chr7.4:4054130-4054149 | MS.gene072518:intron | 40.0% |
! | TGAAGGAGTATATCCATGGT+GGG | - | chr7.4:4054696-4054715 | MS.gene072518:CDS | 40.0% |
! | TTGATTTTCACCCCATTCCA+TGG | + | chr7.4:4054620-4054639 | None:intergenic | 40.0% |
!! | TGAAAAGTACCCTCACAACT+CGG | - | chr7.4:4054075-4054094 | MS.gene072518:intron | 40.0% |
!!! | TCCTGATTTTGGGGTTTCTA+CGG | + | chr7.4:4052713-4052732 | None:intergenic | 40.0% |
AAGAGAGATACTCCAGTCTC+AGG | - | chr7.4:4053552-4053571 | MS.gene072518:intron | 45.0% | |
ACTAACTGAAGACGGAGCAT+CGG | + | chr7.4:4052520-4052539 | None:intergenic | 45.0% | |
AGCTGAGAGCTACAATCTGA+TGG | + | chr7.4:4052449-4052468 | None:intergenic | 45.0% | |
AGGCAAAATGGAAGCTGAGA+TGG | - | chr7.4:4054028-4054047 | MS.gene072518:intron | 45.0% | |
ATCACAGGAACCAGGCAAAA+TGG | - | chr7.4:4054016-4054035 | MS.gene072518:intron | 45.0% | |
ATCTCCATAAGCAGCATGCA+TGG | + | chr7.4:4052745-4052764 | None:intergenic | 45.0% | |
CAACAATCAAGAAGCAGCAG+AGG | - | chr7.4:4054781-4054800 | MS.gene072518:CDS | 45.0% | |
CCATGAAGGAACAAGACAAG+AGG | + | chr7.4:4052399-4052418 | None:intergenic | 45.0% | |
CGAGACGATTCAATCTGAGT+AGG | + | chr7.4:4053890-4053909 | None:intergenic | 45.0% | |
GGTCCTCCAATATTTCCCAA+GGG | - | chr7.4:4054104-4054123 | MS.gene072518:intron | 45.0% | |
GTCTTCTTCTGTAAGCCAAG+AGG | + | chr7.4:4054174-4054193 | None:intergenic | 45.0% | |
TCCGTAGAAACCCCAAAATC+AGG | - | chr7.4:4052709-4052728 | MS.gene072518:intron | 45.0% | |
TCGATCTATCCCACCGAAAT+TGG | - | chr7.4:4053502-4053521 | MS.gene072518:intron | 45.0% | |
TCTCCCTTGGGAAATATTGG+AGG | + | chr7.4:4054110-4054129 | None:intergenic | 45.0% | |
TGGTCCTCCAATATTTCCCA+AGG | - | chr7.4:4054103-4054122 | MS.gene072518:intron | 45.0% | |
TTCTGTAAGCCAAGAGGGTA+AGG | + | chr7.4:4054168-4054187 | None:intergenic | 45.0% | |
TTTCAGTTTGAAGACGTGCC+CGG | - | chr7.4:4054380-4054399 | MS.gene072518:CDS | 45.0% | |
! | AAGGAGTATATCCATGGTGG+GGG | - | chr7.4:4054698-4054717 | MS.gene072518:CDS | 45.0% |
! | ACCAGTTTTCCGAGTTGTGA+GGG | + | chr7.4:4054087-4054106 | None:intergenic | 45.0% |
! | ATCTCAGCTTCCATTTTGCC+TGG | + | chr7.4:4054029-4054048 | None:intergenic | 45.0% |
! | CATCAACGGTCCTGATTTTG+GGG | + | chr7.4:4052722-4052741 | None:intergenic | 45.0% |
! | CCTCTTGTCTTGTTCCTTCA+TGG | - | chr7.4:4052396-4052415 | MS.gene072518:CDS | 45.0% |
! | GAAGGAGTATATCCATGGTG+GGG | - | chr7.4:4054697-4054716 | MS.gene072518:CDS | 45.0% |
! | GCATCAACGGTCCTGATTTT+GGG | + | chr7.4:4052723-4052742 | None:intergenic | 45.0% |
ACCCTCACAACTCGGAAAAC+TGG | - | chr7.4:4054083-4054102 | MS.gene072518:intron | 50.0% | |
AGCAGCATGCATGGCATCAA+CGG | + | chr7.4:4052736-4052755 | None:intergenic | 50.0% | |
AGCTGATGGCACCATGGAAT+GGG | - | chr7.4:4054606-4054625 | MS.gene072518:CDS | 50.0% | |
ATCCCACCGAAATTGGCACA+GGG | - | chr7.4:4053509-4053528 | MS.gene072518:intron | 50.0% | |
ATTGTAGCTCTCAGCTCCCT+CGG | - | chr7.4:4052453-4052472 | MS.gene072518:CDS | 50.0% | |
CAAGGAAGATGTGCCCAATC+TGG | - | chr7.4:4054724-4054743 | MS.gene072518:CDS | 50.0% | |
CCAGTTCCAAACTCTCCCTT+GGG | + | chr7.4:4054122-4054141 | None:intergenic | 50.0% | |
CGCCATGAATACCACAGTTC+GGG | + | chr7.4:4052426-4052445 | None:intergenic | 50.0% | |
GAAGCTGAGATGGCTGAAGT+TGG | - | chr7.4:4054038-4054057 | MS.gene072518:intron | 50.0% | |
GCCATGAATACCACAGTTCG+GGG | + | chr7.4:4052425-4052444 | None:intergenic | 50.0% | |
GCGCCATGAATACCACAGTT+CGG | + | chr7.4:4052427-4052446 | None:intergenic | 50.0% | |
TAAATCCACTTGGGATGGCC+TGG | + | chr7.4:4053587-4053606 | None:intergenic | 50.0% | |
TATCCCACCGAAATTGGCAC+AGG | - | chr7.4:4053508-4053527 | MS.gene072518:intron | 50.0% | |
TCACCATAACCACGGAGATC+CGG | + | chr7.4:4052495-4052514 | None:intergenic | 50.0% | |
TCCAGTTCCAAACTCTCCCT+TGG | + | chr7.4:4054123-4054142 | None:intergenic | 50.0% | |
TCCCCGAACTGTGGTATTCA+TGG | - | chr7.4:4052421-4052440 | MS.gene072518:CDS | 50.0% | |
TTCCCTGTGCCAATTTCGGT+GGG | + | chr7.4:4053514-4053533 | None:intergenic | 50.0% | |
TTGGGGTTTCTACGGAGTAG+TGG | + | chr7.4:4052705-4052724 | None:intergenic | 50.0% | |
TTTCCCTGTGCCAATTTCGG+TGG | + | chr7.4:4053515-4053534 | None:intergenic | 50.0% | |
TTTGCCTGGTTCCTGTGATG+CGG | + | chr7.4:4054015-4054034 | None:intergenic | 50.0% | |
! | ATTGGGGTGCCATCATTGGT+TGG | - | chr7.4:4052625-4052644 | MS.gene072518:intron | 50.0% |
! | CATGATTGGGGTGCCATCAT+TGG | - | chr7.4:4052621-4052640 | MS.gene072518:intron | 50.0% |
! | GACCAGTTTTCCGAGTTGTG+AGG | + | chr7.4:4054088-4054107 | None:intergenic | 50.0% |
! | GATGCCATGCATGCTGCTTA+TGG | - | chr7.4:4052738-4052757 | MS.gene072518:intron | 50.0% |
! | GGCATCAACGGTCCTGATTT+TGG | + | chr7.4:4052724-4052743 | None:intergenic | 50.0% |
! | TATCCATGGTGGGGGATTCA+AGG | - | chr7.4:4054706-4054725 | MS.gene072518:CDS | 50.0% |
! | TGAAGTGCGCCACTCCTTTT+TGG | + | chr7.4:4054763-4054782 | None:intergenic | 50.0% |
!! | CATCGGTGTCACCATAACCA+CGG | + | chr7.4:4052503-4052522 | None:intergenic | 50.0% |
!! | TTGCTTTTGGTCCGCATCAC+AGG | - | chr7.4:4054001-4054020 | MS.gene072518:intron | 50.0% |
ACAGTTCGGGGAAGCCATGA+AGG | + | chr7.4:4052413-4052432 | None:intergenic | 55.0% | |
ATTGGGAGCTGATGGCACCA+TGG | - | chr7.4:4054600-4054619 | MS.gene072518:CDS | 55.0% | |
CTCCTGACACCTTACCCTCT+TGG | - | chr7.4:4054156-4054175 | MS.gene072518:intron | 55.0% | |
CTTCCTTGAATCCCCCACCA+TGG | + | chr7.4:4054712-4054731 | None:intergenic | 55.0% | |
GAGCTGATGGCACCATGGAA+TGG | - | chr7.4:4054605-4054624 | MS.gene072518:CDS | 55.0% | |
GCTGATGGCACCATGGAATG+GGG | - | chr7.4:4054607-4054626 | MS.gene072518:CDS | 55.0% | |
TTCATGGCTTCCCCGAACTG+TGG | - | chr7.4:4052412-4052431 | MS.gene072518:CDS | 55.0% | |
! | AGCCAAGAGGGTAAGGTGTC+AGG | + | chr7.4:4054161-4054180 | None:intergenic | 55.0% |
! | CCCAAGGGAGAGTTTGGAAC+TGG | - | chr7.4:4054119-4054138 | MS.gene072518:intron | 55.0% |
AGCAACAGCACGGTAGCCGA+GGG | + | chr7.4:4052472-4052491 | None:intergenic | 60.0% | |
AGTCTCAGGACACCACCACC+AGG | - | chr7.4:4053566-4053585 | MS.gene072518:intron | 60.0% | |
ATCCACTTGGGATGGCCTGG+TGG | + | chr7.4:4053584-4053603 | None:intergenic | 60.0% | |
GCTCCGGATCTCCGTGGTTA+TGG | - | chr7.4:4052489-4052508 | MS.gene072518:CDS | 60.0% | |
GGAGATCCGGAGCAACAGCA+CGG | + | chr7.4:4052482-4052501 | None:intergenic | 60.0% | |
TGGTCCGCATCACAGGAACC+AGG | - | chr7.4:4054008-4054027 | MS.gene072518:intron | 60.0% | |
!! | TGGTGGTGGTGTCCTGAGAC+TGG | + | chr7.4:4053567-4053586 | None:intergenic | 60.0% |
CACCACCAGGCCATCCCAAG+TGG | - | chr7.4:4053579-4053598 | MS.gene072518:intron | 65.0% | |
CACTTGGGATGGCCTGGTGG+TGG | + | chr7.4:4053581-4053600 | None:intergenic | 65.0% | |
GAGCAACAGCACGGTAGCCG+AGG | + | chr7.4:4052473-4052492 | None:intergenic | 65.0% | |
GCTGTTGCTCCGGATCTCCG+TGG | - | chr7.4:4052483-4052502 | MS.gene072518:CDS | 65.0% | |
! | CGGCTACCGTGCTGTTGCTC+CGG | - | chr7.4:4052473-4052492 | MS.gene072518:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 4052321 | 4054844 | 4052321 | ID=MS.gene072518 |
chr7.4 | mRNA | 4052321 | 4054844 | 4052321 | ID=MS.gene072518.t1;Parent=MS.gene072518 |
chr7.4 | exon | 4054377 | 4054844 | 4054377 | ID=MS.gene072518.t1.exon1;Parent=MS.gene072518.t1 |
chr7.4 | CDS | 4054377 | 4054844 | 4054377 | ID=cds.MS.gene072518.t1;Parent=MS.gene072518.t1 |
chr7.4 | exon | 4052898 | 4053142 | 4052898 | ID=MS.gene072518.t1.exon2;Parent=MS.gene072518.t1 |
chr7.4 | CDS | 4052898 | 4053142 | 4052898 | ID=cds.MS.gene072518.t1;Parent=MS.gene072518.t1 |
chr7.4 | exon | 4052321 | 4052567 | 4052321 | ID=MS.gene072518.t1.exon3;Parent=MS.gene072518.t1 |
chr7.4 | CDS | 4052321 | 4052567 | 4052321 | ID=cds.MS.gene072518.t1;Parent=MS.gene072518.t1 |
Gene Sequence |
Protein sequence |