Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060994.t1 | XP_024636842.1 | 96.3 | 404 | 15 | 0 | 1 | 404 | 10 | 413 | 1.40E-193 | 685.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060994.t1 | A0A396IFQ4 | 95.6 | 407 | 15 | 1 | 1 | 404 | 10 | 416 | 4.1e-192 | 680.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050438 | MS.gene060994 | 0.807843 | 4.15E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene060994 | 0.810533 | 1.10E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene060994 | 0.825589 | 4.32E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene060994 | 0.802483 | 5.49E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene060994 | 0.829431 | 5.17E-55 | -1.69E-46 |
| MS.gene054185 | MS.gene060994 | 0.801889 | 7.28E-49 | -1.69E-46 |
| MS.gene054433 | MS.gene060994 | 0.802565 | 5.28E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene060994 | 0.811185 | 7.94E-51 | -1.69E-46 |
| MS.gene057121 | MS.gene060994 | 0.832218 | 1.07E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene060994 | 0.803875 | 2.83E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene060994 | 0.8461 | 2.68E-59 | -1.69E-46 |
| MS.gene060994 | MS.gene061000 | 0.996513 | 1.71E-228 | -1.69E-46 |
| MS.gene060994 | MS.gene061837 | -0.821912 | 3.14E-53 | -1.69E-46 |
| MS.gene060994 | MS.gene061838 | -0.813997 | 1.93E-51 | -1.69E-46 |
| MS.gene060994 | MS.gene063114 | 0.807502 | 4.90E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene065042 | 0.821209 | 4.56E-53 | -1.69E-46 |
| MS.gene060994 | MS.gene06691 | 0.825285 | 5.09E-54 | -1.69E-46 |
| MS.gene060994 | MS.gene06900 | 0.834771 | 2.47E-56 | -1.69E-46 |
| MS.gene060994 | MS.gene071062 | 0.807865 | 4.10E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene07115 | 0.830881 | 2.29E-55 | -1.69E-46 |
| MS.gene060994 | MS.gene071529 | 0.810443 | 1.15E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene071772 | 0.826995 | 2.00E-54 | -1.69E-46 |
| MS.gene060994 | MS.gene072671 | 0.8069 | 6.57E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene073317 | 0.807265 | 5.50E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene07431 | 0.807305 | 5.40E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene09136 | 0.805475 | 1.31E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene21134 | 0.802084 | 6.63E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene22689 | 0.809802 | 1.58E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene22691 | 0.812188 | 4.81E-51 | -1.69E-46 |
| MS.gene060994 | MS.gene23912 | 0.825771 | 3.91E-54 | -1.69E-46 |
| MS.gene060994 | MS.gene23915 | 0.801105 | 1.05E-48 | -1.69E-46 |
| MS.gene060994 | MS.gene29790 | 0.807349 | 5.28E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene32786 | 0.807052 | 6.10E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene35485 | 0.806259 | 8.97E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene38339 | 0.804577 | 2.02E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene39104 | 0.803066 | 4.16E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene39299 | 0.811301 | 7.50E-51 | -1.69E-46 |
| MS.gene060994 | MS.gene43917 | 0.851869 | 6.70E-61 | -1.69E-46 |
| MS.gene060994 | MS.gene43919 | 0.819987 | 8.70E-53 | -1.69E-46 |
| MS.gene060994 | MS.gene44398 | 0.830953 | 2.20E-55 | -1.69E-46 |
| MS.gene060994 | MS.gene45108 | 0.826255 | 3.00E-54 | -1.69E-46 |
| MS.gene060994 | MS.gene45771 | 0.812098 | 5.03E-51 | -1.69E-46 |
| MS.gene060994 | MS.gene49824 | 0.809174 | 2.16E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene50644 | 0.827679 | 1.37E-54 | -1.69E-46 |
| MS.gene060994 | MS.gene50700 | 0.805 | 1.65E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene52399 | 0.81856 | 1.84E-52 | -1.69E-46 |
| MS.gene060994 | MS.gene55219 | -0.833327 | 5.68E-56 | -1.69E-46 |
| MS.gene060994 | MS.gene57565 | 0.821754 | 3.41E-53 | -1.69E-46 |
| MS.gene060994 | MS.gene57566 | 0.8127 | 3.72E-51 | -1.69E-46 |
| MS.gene060994 | MS.gene57945 | 0.82805 | 1.11E-54 | -1.69E-46 |
| MS.gene060994 | MS.gene58270 | 0.802319 | 5.94E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene58998 | 0.802134 | 6.48E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene59218 | -0.802928 | 4.45E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene60737 | 0.801334 | 9.46E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene62154 | 0.810315 | 1.23E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene63507 | 0.801765 | 7.72E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene64621 | 0.826679 | 2.38E-54 | -1.69E-46 |
| MS.gene060994 | MS.gene65665 | 0.809851 | 1.54E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene65851 | 0.809705 | 1.66E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene66847 | 0.816802 | 4.58E-52 | -1.69E-46 |
| MS.gene060994 | MS.gene68168 | 0.834247 | 3.35E-56 | -1.69E-46 |
| MS.gene060994 | MS.gene68764 | 0.839408 | 1.61E-57 | -1.69E-46 |
| MS.gene060994 | MS.gene68907 | 0.820576 | 6.38E-53 | -1.69E-46 |
| MS.gene060994 | MS.gene68938 | 0.808801 | 2.59E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene70566 | 0.80761 | 4.65E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene73268 | 0.826202 | 3.09E-54 | -1.69E-46 |
| MS.gene060994 | MS.gene74030 | -0.811827 | 5.76E-51 | -1.69E-46 |
| MS.gene060994 | MS.gene74031 | -0.81341 | 2.60E-51 | -1.69E-46 |
| MS.gene060994 | MS.gene74587 | 0.810224 | 1.28E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene76043 | -0.806833 | 6.79E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene77301 | 0.821733 | 3.45E-53 | -1.69E-46 |
| MS.gene060994 | MS.gene79290 | 0.835384 | 1.73E-56 | -1.69E-46 |
| MS.gene060994 | MS.gene82769 | 0.817682 | 2.91E-52 | -1.69E-46 |
| MS.gene060994 | MS.gene84404 | 0.810131 | 1.34E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene86055 | 0.804972 | 1.67E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene89017 | 0.803218 | 3.87E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene90704 | 0.80986 | 1.54E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene93385 | 0.835145 | 1.99E-56 | -1.69E-46 |
| MS.gene060994 | MS.gene93892 | 0.808506 | 3.00E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene95864 | 0.803628 | 3.18E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene96276 | 0.811921 | 5.50E-51 | -1.69E-46 |
| MS.gene060994 | MS.gene99165 | 0.8027 | 4.95E-49 | -1.69E-46 |
| MS.gene060994 | MS.gene99854 | 0.813621 | 2.33E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060994.t1 | AT3G06660 | 42.318 | 371 | 180 | 11 | 46 | 398 | 66 | 420 | 5.78e-62 | 206 |
| MS.gene060994.t1 | AT2G47350 | 38.760 | 387 | 183 | 13 | 44 | 400 | 123 | 485 | 6.02e-56 | 191 |
| MS.gene060994.t1 | AT1G56460 | 62.676 | 142 | 53 | 0 | 253 | 394 | 359 | 500 | 9.14e-52 | 181 |
| MS.gene060994.t1 | AT1G56460 | 62.676 | 142 | 53 | 0 | 253 | 394 | 389 | 530 | 1.72e-51 | 181 |
| MS.gene060994.t1 | AT1G56460 | 49.194 | 124 | 63 | 0 | 253 | 376 | 359 | 482 | 8.31e-26 | 109 |
Find 0 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGATATTAAATGAAT+TGG | - | 32437:15666-15685 | None:intergenic | 10.0% |
| !! | ACAATTATTATAGATAAAAT+TGG | + | 32437:17121-17140 | MS.gene060994:intron | 10.0% |
| !! | AATATTGCAAATTGAAATTA+TGG | + | 32437:15726-15745 | MS.gene060994:intron | 15.0% |
| !! | TAATTGATTGAAATTCAAAT+GGG | - | 32437:15913-15932 | None:intergenic | 15.0% |
| !! | TATAGTTGCATTATTATATA+TGG | - | 32437:15993-16012 | None:intergenic | 15.0% |
| !! | AAAGTTTGTAGTATAACATT+GGG | + | 32437:18057-18076 | MS.gene060994:intron | 20.0% |
| !! | AAATGTTTAGAAGAAAATCA+AGG | - | 32437:18501-18520 | None:intergenic | 20.0% |
| !! | AAGCAAATAAAATAAGATCA+AGG | - | 32437:16642-16661 | None:intergenic | 20.0% |
| !! | ACATACCATATAAATTTAGT+GGG | + | 32437:15886-15905 | MS.gene060994:intron | 20.0% |
| !! | ATAAAATTGTGAGATCTATA+AGG | - | 32437:17628-17647 | None:intergenic | 20.0% |
| !! | CTAATTGATTGAAATTCAAA+TGG | - | 32437:15914-15933 | None:intergenic | 20.0% |
| !! | TAAAGTTTGTAGTATAACAT+TGG | + | 32437:18056-18075 | MS.gene060994:intron | 20.0% |
| !! | TACATACCATATAAATTTAG+TGG | + | 32437:15885-15904 | MS.gene060994:intron | 20.0% |
| !! | TATATTTCCTTCAGATAAAT+TGG | + | 32437:16009-16028 | MS.gene060994:intron | 20.0% |
| !! | TTATGAATTAAGTGTATGTT+TGG | + | 32437:15434-15453 | MS.gene060994:intron | 20.0% |
| !!! | AATTATGGTTCTTCAATTTT+CGG | + | 32437:15741-15760 | MS.gene060994:intron | 20.0% |
| !!! | ATTTTTTACGCATTTTTACA+AGG | + | 32437:15591-15610 | MS.gene060994:intron | 20.0% |
| !!! | CTTTAAAGTTGAAACAATAT+AGG | - | 32437:18271-18290 | None:intergenic | 20.0% |
| !!! | TAGAAAAAAATTGATTCTAG+AGG | + | 32437:15478-15497 | MS.gene060994:intron | 20.0% |
| ! | AAAATCAATGCATCAAAAAG+AGG | + | 32437:16303-16322 | MS.gene060994:CDS | 25.0% |
| ! | AACTTTACAGAGTTATACAA+AGG | - | 32437:15805-15824 | None:intergenic | 25.0% |
| ! | AAGAAGCTTAAACTCAAATT+TGG | + | 32437:15295-15314 | MS.gene060994:CDS | 25.0% |
| ! | AGTGATGAATCAATATTAGA+AGG | + | 32437:16438-16457 | MS.gene060994:CDS | 25.0% |
| ! | ATCATCAGAAAAAGTTACTA+CGG | - | 32437:18383-18402 | None:intergenic | 25.0% |
| ! | CAATATTTCAGCATTACTTT+GGG | + | 32437:15188-15207 | MS.gene060994:CDS | 25.0% |
| ! | CACTTTCAATCAATATTTGA+TGG | - | 32437:17675-17694 | None:intergenic | 25.0% |
| ! | CTGAACAATTATGATTATTG+CGG | - | 32437:16518-16537 | None:intergenic | 25.0% |
| ! | GAATCATTCACATAAAAGAA+AGG | + | 32437:16176-16195 | MS.gene060994:CDS | 25.0% |
| ! | GAGAGATTAAGAAAAACTAT+AGG | + | 32437:17279-17298 | MS.gene060994:intron | 25.0% |
| ! | GTGATGAATCAATATTAGAA+GGG | + | 32437:16439-16458 | MS.gene060994:CDS | 25.0% |
| ! | GTTAATACCAATTTATCTGA+AGG | - | 32437:16019-16038 | None:intergenic | 25.0% |
| ! | TGAACAATTATGATTATTGC+GGG | - | 32437:16517-16536 | None:intergenic | 25.0% |
| ! | TGATCTTAAGAAGAATTACT+CGG | - | 32437:17596-17615 | None:intergenic | 25.0% |
| !! | AGATTGAATATTTGAAGTTG+AGG | - | 32437:15957-15976 | None:intergenic | 25.0% |
| !! | GAGAATTTTCTCATAATTAG+AGG | + | 32437:17252-17271 | MS.gene060994:intron | 25.0% |
| !! | GATTGAATATTTGAAGTTGA+GGG | - | 32437:15956-15975 | None:intergenic | 25.0% |
| !! | GGTTAGAATATTTTCTTAAG+TGG | + | 32437:17168-17187 | MS.gene060994:intron | 25.0% |
| !! | TCAGTTTCATACAACATTTT+GGG | - | 32437:16992-17011 | None:intergenic | 25.0% |
| !! | TGTATACTCGATTTAACTTA+TGG | - | 32437:16760-16779 | None:intergenic | 25.0% |
| !! | TTCAGTTTCATACAACATTT+TGG | - | 32437:16993-17012 | None:intergenic | 25.0% |
| !! | TTTTAGTACTTGATATGCTT+TGG | + | 32437:18519-18538 | MS.gene060994:intron | 25.0% |
| !! | TTTTTAATCACATCTTCTCT+TGG | - | 32437:17100-17119 | None:intergenic | 25.0% |
| !!! | AATCTAACTTTGAGATAATG+TGG | - | 32437:16610-16629 | None:intergenic | 25.0% |
| !!! | ACTTTAAAGTTCTAACATGT+TGG | + | 32437:18282-18301 | MS.gene060994:intron | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | + | 32437:15504-15523 | MS.gene060994:intron | 25.0% |
| !!! | CACTGAATTTATTTTCTTCT+TGG | - | 32437:17033-17052 | None:intergenic | 25.0% |
| !!! | GAATTGATTTTGACATGTTT+GGG | + | 32437:15505-15524 | MS.gene060994:intron | 25.0% |
| !!! | GTAACTTTTTCTGATGATAT+TGG | + | 32437:18385-18404 | MS.gene060994:CDS | 25.0% |
| !!! | GTAGTGCATATTACTTTTAA+TGG | + | 32437:17514-17533 | MS.gene060994:intron | 25.0% |
| !!! | TATCAGTGATTACTTTTACT+TGG | + | 32437:17456-17475 | MS.gene060994:intron | 25.0% |
| AAACAATATAGGAAGAAGGT+TGG | - | 32437:18260-18279 | None:intergenic | 30.0% | |
| AAGCTTAAACTCAAATTTGG+AGG | + | 32437:15298-15317 | MS.gene060994:CDS | 30.0% | |
| AGAAGAGATTTAGAGGTAAA+TGG | + | 32437:17313-17332 | MS.gene060994:intron | 30.0% | |
| AGGAAAAGATGAATAAGCAA+AGG | + | 32437:18200-18219 | MS.gene060994:CDS | 30.0% | |
| GCAATATTTCAGCATTACTT+TGG | + | 32437:15187-15206 | MS.gene060994:CDS | 30.0% | |
| GGAAAAGATGAATAAGCAAA+GGG | + | 32437:18201-18220 | MS.gene060994:CDS | 30.0% | |
| GTTGAAACAATATAGGAAGA+AGG | - | 32437:18264-18283 | None:intergenic | 30.0% | |
| TACCTCTAAATCTCTTCTAA+TGG | - | 32437:17311-17330 | None:intergenic | 30.0% | |
| TGTGTACAACTAATGTAAGT+GGG | + | 32437:17649-17668 | MS.gene060994:intron | 30.0% | |
| TTGACCAAGTATCTTCTTAA+TGG | - | 32437:18158-18177 | None:intergenic | 30.0% | |
| TTGATTCATCACTTGATGTA+GGG | - | 32437:16431-16450 | None:intergenic | 30.0% | |
| TTGTGTACAACTAATGTAAG+TGG | + | 32437:17648-17667 | MS.gene060994:intron | 30.0% | |
| ! | ACTCGATTTAACTTATGGTA+GGG | - | 32437:16755-16774 | None:intergenic | 30.0% |
| ! | ATTGATTCATCACTTGATGT+AGG | - | 32437:16432-16451 | None:intergenic | 30.0% |
| ! | ATTGGTGTAGCTTTTATAGT+AGG | + | 32437:17139-17158 | MS.gene060994:intron | 30.0% |
| ! | CTCTCTTTTTATCATAAGAG+CGG | - | 32437:16101-16120 | None:intergenic | 30.0% |
| ! | TACTCGATTTAACTTATGGT+AGG | - | 32437:16756-16775 | None:intergenic | 30.0% |
| ! | TCTAAAACTAAGATGATCAG+AGG | - | 32437:18034-18053 | None:intergenic | 30.0% |
| ! | TCTCTTTTTATCATAAGAGC+GGG | - | 32437:16100-16119 | None:intergenic | 30.0% |
| ! | TTGGTGTAGCTTTTATAGTA+GGG | + | 32437:17140-17159 | MS.gene060994:intron | 30.0% |
| !! | TTCTAAAGCTTCTCATCTAT+CGG | + | 32437:16039-16058 | MS.gene060994:intron | 30.0% |
| AAAAGTTACTACGGTTCCAT+TGG | - | 32437:18374-18393 | None:intergenic | 35.0% | |
| AAAGTTACTACGGTTCCATT+GGG | - | 32437:18373-18392 | None:intergenic | 35.0% | |
| AATGCAAAGTGGTCTATGTT+CGG | - | 32437:15623-15642 | None:intergenic | 35.0% | |
| AATTCATCCAAGTGCATGTT+TGG | - | 32437:15702-15721 | None:intergenic | 35.0% | |
| ACAAAGTGCAAGTTTAGCAA+AGG | + | 32437:16777-16796 | MS.gene060994:intron | 35.0% | |
| ACAACAAGCCATTAACCTAT+AGG | - | 32437:17428-17447 | None:intergenic | 35.0% | |
| ACAATTATGATTATTGCGGG+TGG | - | 32437:16514-16533 | None:intergenic | 35.0% | |
| ACGAAAAATTCAAGCTGAGA+AGG | + | 32437:17977-17996 | MS.gene060994:CDS | 35.0% | |
| AGCCATTAGAAGAGATTTAG+AGG | + | 32437:17306-17325 | MS.gene060994:intron | 35.0% | |
| AGTGTTTGATGCTAGATTGA+AGG | - | 32437:18332-18351 | None:intergenic | 35.0% | |
| ATATTAACCTTTGAGTGGGA+TGG | + | 32437:16874-16893 | MS.gene060994:intron | 35.0% | |
| ATGATAAAAAGAGAGGCCAT+GGG | + | 32437:16106-16125 | MS.gene060994:CDS | 35.0% | |
| ATGGTATGTACATGATTTCG+TGG | - | 32437:15875-15894 | None:intergenic | 35.0% | |
| ATGTAACCAACCTACCTATA+TGG | + | 32437:17396-17415 | MS.gene060994:intron | 35.0% | |
| ATGTCAATAATGCTTGCAAC+TGG | - | 32437:16570-16589 | None:intergenic | 35.0% | |
| ATTATTACCTTAGCATTGCG+AGG | - | 32437:15361-15380 | None:intergenic | 35.0% | |
| ATTGCATCACAATTAACCCT+AGG | - | 32437:15172-15191 | None:intergenic | 35.0% | |
| CACTAATGCTTACAAGTATC+GGG | + | 32437:18622-18641 | MS.gene060994:CDS | 35.0% | |
| CGCTCTTATGATAAAAAGAG+AGG | + | 32437:16099-16118 | MS.gene060994:CDS | 35.0% | |
| CTCTCACATTGTGTTTATGT+AGG | + | 32437:18126-18145 | MS.gene060994:intron | 35.0% | |
| GACATTGTATGCATATCTCT+AGG | + | 32437:17858-17877 | MS.gene060994:intron | 35.0% | |
| GACATTGTTTGGAAGATACT+TGG | - | 32437:18415-18434 | None:intergenic | 35.0% | |
| GCACTAATGCTTACAAGTAT+CGG | + | 32437:18621-18640 | MS.gene060994:CDS | 35.0% | |
| GGAGATATTAACCTTTGAGT+GGG | + | 32437:16870-16889 | MS.gene060994:intron | 35.0% | |
| GTGTTTGATGCTAGATTGAA+GGG | - | 32437:18331-18350 | None:intergenic | 35.0% | |
| TAAAAAGAGCAAGTTGTCAG+AGG | + | 32437:17920-17939 | MS.gene060994:CDS | 35.0% | |
| TATGATAAAAAGAGAGGCCA+TGG | + | 32437:16105-16124 | MS.gene060994:CDS | 35.0% | |
| TCATACTGAGTTACGAAACA+AGG | - | 32437:17788-17807 | None:intergenic | 35.0% | |
| TCTTCCAAACAATGTCTAAC+AGG | + | 32437:18419-18438 | MS.gene060994:CDS | 35.0% | |
| TGGGTCCCACTAAATTTATA+TGG | - | 32437:15894-15913 | None:intergenic | 35.0% | |
| TGGTATGTACATGATTTCGT+GGG | - | 32437:15874-15893 | None:intergenic | 35.0% | |
| TGTACCTGTTAGACATTGTT+TGG | - | 32437:18426-18445 | None:intergenic | 35.0% | |
| TTGTAAGCATTAGTGCAGTT+TGG | - | 32437:18617-18636 | None:intergenic | 35.0% | |
| TTGTTTCGTAACTCAGTATG+AGG | + | 32437:17787-17806 | MS.gene060994:intron | 35.0% | |
| ! | AAAGTGAGTTGAATGCAAAG+TGG | - | 32437:15634-15653 | None:intergenic | 35.0% |
| ! | AGCTTTTATAGTAGGGAACA+TGG | + | 32437:17147-17166 | MS.gene060994:intron | 35.0% |
| ! | CTCGATTTAACTTATGGTAG+GGG | - | 32437:16754-16773 | None:intergenic | 35.0% |
| !! | ATATAGGTAGGTTGGTTACA+TGG | - | 32437:17397-17416 | None:intergenic | 35.0% |
| !! | GACACAATTGTTGTTTCTGA+TGG | + | 32437:15250-15269 | MS.gene060994:CDS | 35.0% |
| AAACCAACAGATTCCCTCTT+TGG | - | 32437:16471-16490 | None:intergenic | 40.0% | |
| ACAGCTAATCAAGAAAGCTG+AGG | + | 32437:17944-17963 | MS.gene060994:CDS | 40.0% | |
| ACTGAGTTACGAAACAAGGT+GGG | - | 32437:17784-17803 | None:intergenic | 40.0% | |
| AGAGGTAAATGGTCTCATGT+TGG | + | 32437:17324-17343 | MS.gene060994:intron | 40.0% | |
| AGCATTATTGACATCTCAGG+TGG | + | 32437:16576-16595 | MS.gene060994:intron | 40.0% | |
| AGGAAAGAACTATGAGGATC+GGG | + | 32437:16389-16408 | MS.gene060994:CDS | 40.0% | |
| AGTCACTTCGTATGGAATCA+AGG | - | 32437:16839-16858 | None:intergenic | 40.0% | |
| ATTTCATCCATCCCACTCAA+AGG | - | 32437:16884-16903 | None:intergenic | 40.0% | |
| CAAAGATCTCAATGGTGCAA+TGG | + | 32437:17056-17075 | MS.gene060994:intron | 40.0% | |
| CAGGAAAGAACTATGAGGAT+CGG | + | 32437:16388-16407 | MS.gene060994:CDS | 40.0% | |
| CAGTGTCACAAAGATCTCAA+TGG | + | 32437:17048-17067 | MS.gene060994:intron | 40.0% | |
| CCTATAGGTGAGATCCATAT+AGG | - | 32437:17413-17432 | None:intergenic | 40.0% | |
| CCTATATGGATCTCACCTAT+AGG | + | 32437:17410-17429 | MS.gene060994:intron | 40.0% | |
| CGTAAACTGTATCAAGACCT+TGG | - | 32437:18236-18255 | None:intergenic | 40.0% | |
| CTGATGAGGAAAATACTAGC+TGG | + | 32437:17230-17249 | MS.gene060994:intron | 40.0% | |
| CTTTCAAAGATGCGCTATCT+GGG | + | 32437:16544-16563 | MS.gene060994:CDS | 40.0% | |
| GCAAGCATTATTGACATCTC+AGG | + | 32437:16573-16592 | MS.gene060994:CDS | 40.0% | |
| GCAGCCATTAAGAAGATACT+TGG | + | 32437:18151-18170 | MS.gene060994:CDS | 40.0% | |
| GGATCTCACCTATAGGTTAA+TGG | + | 32437:17417-17436 | MS.gene060994:intron | 40.0% | |
| GGGAGATATTAACCTTTGAG+TGG | + | 32437:16869-16888 | MS.gene060994:intron | 40.0% | |
| GGTGTTTGTAAAGATGCATC+AGG | + | 32437:16369-16388 | MS.gene060994:CDS | 40.0% | |
| GTAACAACCAAGACTGCAAA+GGG | - | 32437:18666-18685 | None:intergenic | 40.0% | |
| GTATTTGCAAGAGCTTCTAC+TGG | + | 32437:15776-15795 | MS.gene060994:intron | 40.0% | |
| TAACAACCAAGACTGCAAAG+GGG | - | 32437:18665-18684 | None:intergenic | 40.0% | |
| TACTGAGTTACGAAACAAGG+TGG | - | 32437:17785-17804 | None:intergenic | 40.0% | |
| TAGCATCAAACACTGTTCGA+TGG | + | 32437:18338-18357 | MS.gene060994:CDS | 40.0% | |
| TAGGTGAGATCCATATAGGT+AGG | - | 32437:17409-17428 | None:intergenic | 40.0% | |
| TATCTCCTAGTCACTTCGTA+TGG | - | 32437:16847-16866 | None:intergenic | 40.0% | |
| TATTGACATCTCAGGTGGTT+TGG | + | 32437:16581-16600 | MS.gene060994:intron | 40.0% | |
| TCTTTCAAAGATGCGCTATC+TGG | + | 32437:16543-16562 | MS.gene060994:CDS | 40.0% | |
| TGAGATCCATATAGGTAGGT+TGG | - | 32437:17405-17424 | None:intergenic | 40.0% | |
| TGATAAAAAGAGAGGCCATG+GGG | + | 32437:16107-16126 | MS.gene060994:CDS | 40.0% | |
| TGATTCCATACGAAGTGACT+AGG | + | 32437:16839-16858 | MS.gene060994:intron | 40.0% | |
| TGCATCAGGAAAGAACTATG+AGG | + | 32437:16383-16402 | MS.gene060994:CDS | 40.0% | |
| TGTAACAACCAAGACTGCAA+AGG | - | 32437:18667-18686 | None:intergenic | 40.0% | |
| TTGAGTGGGATGGATGAAAT+AGG | + | 32437:16884-16903 | MS.gene060994:intron | 40.0% | |
| ! | AGTGGATTTAGCAAGTTACG+AGG | + | 32437:17186-17205 | MS.gene060994:intron | 40.0% |
| ! | CAATTAACCCTAGGTTTTCG+TGG | - | 32437:15163-15182 | None:intergenic | 40.0% |
| ! | GATTTAACTTATGGTAGGGG+CGG | - | 32437:16751-16770 | None:intergenic | 40.0% |
| ! | TATCGGTTATCAATGCATGC+AGG | + | 32437:16056-16075 | MS.gene060994:intron | 40.0% |
| ! | TTCTAACATGTTGGTTGTGC+AGG | + | 32437:18291-18310 | MS.gene060994:intron | 40.0% |
| !! | AAACACTGTTCGATGGACTA+TGG | + | 32437:18345-18364 | MS.gene060994:CDS | 40.0% |
| !! | AACACTGTTCGATGGACTAT+GGG | + | 32437:18346-18365 | MS.gene060994:CDS | 40.0% |
| AAGAGGAGTTAGTCGCCATA+AGG | + | 32437:16320-16339 | MS.gene060994:CDS | 45.0% | |
| AAGCCAAAGAGGGAATCTGT+TGG | + | 32437:16465-16484 | MS.gene060994:CDS | 45.0% | |
| ACGAAGTGACTAGGAGATAG+AGG | + | 32437:16848-16867 | MS.gene060994:intron | 45.0% | |
| AGAAGGGAAGAAGCCAAAGA+GGG | + | 32437:16455-16474 | MS.gene060994:CDS | 45.0% | |
| AGTAACTCGCTTGCTCTTAC+GGG | - | 32437:16217-16236 | None:intergenic | 45.0% | |
| AGTCGCCATAAGGACAATCA+AGG | + | 32437:16330-16349 | MS.gene060994:CDS | 45.0% | |
| AGTTACTGAGAGATGTGCCA+TGG | + | 32437:16230-16249 | MS.gene060994:CDS | 45.0% | |
| CACTGAACCAAACATGCACT+TGG | + | 32437:15692-15711 | MS.gene060994:intron | 45.0% | |
| CAGTAACTCGCTTGCTCTTA+CGG | - | 32437:16218-16237 | None:intergenic | 45.0% | |
| CGAAGTGACTAGGAGATAGA+GGG | + | 32437:16849-16868 | MS.gene060994:intron | 45.0% | |
| CTAATAGGCTCGTGCATGTT+GGG | + | 32437:17349-17368 | MS.gene060994:intron | 45.0% | |
| CTGAGTTACGAAACAAGGTG+GGG | - | 32437:17783-17802 | None:intergenic | 45.0% | |
| GCAAAGGGATGAAATAGCCA+AGG | + | 32437:18216-18235 | MS.gene060994:CDS | 45.0% | |
| GCTTAACCAATTTGTCCCCA+TGG | - | 32437:16125-16144 | None:intergenic | 45.0% | |
| GGTCTCATGTTGGACCTAAT+AGG | + | 32437:17334-17353 | MS.gene060994:intron | 45.0% | |
| TACCTTAGCATTGCGAGGAT+CGG | - | 32437:15356-15375 | None:intergenic | 45.0% | |
| TACTTGGTCAAGATCCTGCT+AGG | + | 32437:18167-18186 | MS.gene060994:CDS | 45.0% | |
| TAGAAGGGAAGAAGCCAAAG+AGG | + | 32437:16454-16473 | MS.gene060994:CDS | 45.0% | |
| TCCTCTTTCTTCTTCCTAGC+AGG | - | 32437:18184-18203 | None:intergenic | 45.0% | |
| TCCTGCTAGGAAGAAGAAAG+AGG | + | 32437:18180-18199 | MS.gene060994:CDS | 45.0% | |
| TGATGTGCCACGAAAACCTA+GGG | + | 32437:15153-15172 | MS.gene060994:CDS | 45.0% | |
| TGCCTCCTTGATTGTCCTTA+TGG | - | 32437:16338-16357 | None:intergenic | 45.0% | |
| ! | CAAGTGCATGTTTGGTTCAG+TGG | - | 32437:15694-15713 | None:intergenic | 45.0% |
| ! | TGTATGTTTGGTTCCACGTC+TGG | + | 32437:15446-15465 | MS.gene060994:intron | 45.0% |
| !! | CAGCGTTGAGCTGTTTCTAT+AGG | - | 32437:17213-17232 | None:intergenic | 45.0% |
| !! | TCAATGGTGCAATGGACTAG+TGG | + | 32437:17064-17083 | MS.gene060994:intron | 45.0% |
| !!! | TACAAATTTTAAATTAATAA+TGG | + | 32437:17541-17560 | MS.gene060994:intron | 5.0% |
| AAGCTTCCCCTTTGCAGTCT+TGG | + | 32437:18656-18675 | MS.gene060994:CDS | 50.0% | |
| AGAGATGTGCCATGGATGTG+GGG | + | 32437:16238-16257 | MS.gene060994:CDS | 50.0% | |
| AGTTACGAAACAAGGTGGGG+AGG | - | 32437:17780-17799 | None:intergenic | 50.0% | |
| CCAACATGCACGAGCCTATT+AGG | - | 32437:17351-17370 | None:intergenic | 50.0% | |
| CCTAATAGGCTCGTGCATGT+TGG | + | 32437:17348-17367 | MS.gene060994:intron | 50.0% | |
| CGCCATAAGGACAATCAAGG+AGG | + | 32437:16333-16352 | MS.gene060994:CDS | 50.0% | |
| GAAACAGCTCAACGCTGATG+AGG | + | 32437:17216-17235 | MS.gene060994:intron | 50.0% | |
| GAGAGATGTGCCATGGATGT+GGG | + | 32437:16237-16256 | MS.gene060994:CDS | 50.0% | |
| GAGGAGTCACGTTCAAACCT+CGG | - | 32437:18015-18034 | None:intergenic | 50.0% | |
| GTGATGTGCCACGAAAACCT+AGG | + | 32437:15152-15171 | MS.gene060994:CDS | 50.0% | |
| TCAAGCTGAGAAGGCAGCTA+GGG | + | 32437:17986-18005 | MS.gene060994:CDS | 50.0% | |
| TCTATTGTCTCCACCAGACG+TGG | - | 32437:15462-15481 | None:intergenic | 50.0% | |
| TGAGAGATGTGCCATGGATG+TGG | + | 32437:16236-16255 | MS.gene060994:CDS | 50.0% | |
| TTCAAGCTGAGAAGGCAGCT+AGG | + | 32437:17985-18004 | MS.gene060994:CDS | 50.0% | |
| TTCCGATCCTCGCAATGCTA+AGG | + | 32437:15351-15370 | MS.gene060994:CDS | 50.0% | |
| TTGCGGGTGGAATGCTTTCT+TGG | - | 32437:16501-16520 | None:intergenic | 50.0% | |
| ! | ACCTGCGCACTTTTCTCTTG+GGG | - | 32437:18594-18613 | None:intergenic | 50.0% |
| ! | ATGTTTGGTTCCACGTCTGG+TGG | + | 32437:15449-15468 | MS.gene060994:intron | 50.0% |
| ! | GACCTGCGCACTTTTCTCTT+GGG | - | 32437:18595-18614 | None:intergenic | 50.0% |
| ! | GCAAAGGGGAAGCTTTGACT+TGG | - | 32437:18651-18670 | None:intergenic | 50.0% |
| ATCGCTACACCCCACATCCA+TGG | - | 32437:16250-16269 | None:intergenic | 55.0% | |
| GAGAGGCCATGGGGACAAAT+TGG | + | 32437:16116-16135 | MS.gene060994:CDS | 55.0% | |
| GCATTGCGAGGATCGGAAGA+AGG | - | 32437:15349-15368 | None:intergenic | 55.0% | |
| ! | ATGTAATGCGAAGCACCCCC+CGG | + | 32437:17752-17771 | MS.gene060994:intron | 55.0% |
| ! | CAAGGAGGCACAACAATGCG+TGG | + | 32437:16348-16367 | MS.gene060994:CDS | 55.0% |
| ! | CCTGCGCACTTTTCTCTTGG+GGG | - | 32437:18593-18612 | None:intergenic | 55.0% |
| ! | GGACCTGCGCACTTTTCTCT+TGG | - | 32437:18596-18615 | None:intergenic | 55.0% |
| !! | CGATGGACTATGGGTCCCAA+TGG | + | 32437:18355-18374 | MS.gene060994:CDS | 55.0% |
| AAACAAGGTGGGGAGGACCC+GGG | - | 32437:17773-17792 | None:intergenic | 60.0% | |
| AGCTGAGAAGGCAGCTAGGG+AGG | + | 32437:17989-18008 | MS.gene060994:CDS | 60.0% | |
| GAAACAAGGTGGGGAGGACC+CGG | - | 32437:17774-17793 | None:intergenic | 60.0% | |
| GCGAGGATCGGAAGAAGGCT+TGG | - | 32437:15344-15363 | None:intergenic | 60.0% | |
| ! | CCCCCAAGAGAAAAGTGCGC+AGG | + | 32437:18590-18609 | MS.gene060994:CDS | 60.0% |
| ! | GCGCACTTTTCTCTTGGGGG+AGG | - | 32437:18590-18609 | None:intergenic | 60.0% |
| ! | TGTAATGCGAAGCACCCCCC+GGG | + | 32437:17753-17772 | MS.gene060994:intron | 60.0% |
| AACAAGGTGGGGAGGACCCG+GGG | - | 32437:17772-17791 | None:intergenic | 65.0% | |
| ACAAGGTGGGGAGGACCCGG+GGG | - | 32437:17771-17790 | None:intergenic | 70.0% | |
| GAAGGCAGCTAGGGAGGCCG+AGG | + | 32437:17995-18014 | MS.gene060994:CDS | 70.0% | |
| CAAGGTGGGGAGGACCCGGG+GGG | - | 32437:17770-17789 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32437 | gene | 15136 | 18727 | 15136 | ID=MS.gene060994 |
| 32437 | mRNA | 15136 | 18727 | 15136 | ID=MS.gene060994.t1;Parent=MS.gene060994 |
| 32437 | exon | 15136 | 15372 | 15136 | ID=MS.gene060994.t1.exon1;Parent=MS.gene060994.t1 |
| 32437 | CDS | 15136 | 15372 | 15136 | ID=cds.MS.gene060994.t1;Parent=MS.gene060994.t1 |
| 32437 | exon | 16078 | 16594 | 16078 | ID=MS.gene060994.t1.exon2;Parent=MS.gene060994.t1 |
| 32437 | CDS | 16078 | 16594 | 16078 | ID=cds.MS.gene060994.t1;Parent=MS.gene060994.t1 |
| 32437 | exon | 17919 | 18016 | 17919 | ID=MS.gene060994.t1.exon3;Parent=MS.gene060994.t1 |
| 32437 | CDS | 17919 | 18016 | 17919 | ID=cds.MS.gene060994.t1;Parent=MS.gene060994.t1 |
| 32437 | exon | 18148 | 18237 | 18148 | ID=MS.gene060994.t1.exon4;Parent=MS.gene060994.t1 |
| 32437 | CDS | 18148 | 18237 | 18148 | ID=cds.MS.gene060994.t1;Parent=MS.gene060994.t1 |
| 32437 | exon | 18313 | 18440 | 18313 | ID=MS.gene060994.t1.exon5;Parent=MS.gene060994.t1 |
| 32437 | CDS | 18313 | 18440 | 18313 | ID=cds.MS.gene060994.t1;Parent=MS.gene060994.t1 |
| 32437 | exon | 18583 | 18727 | 18583 | ID=MS.gene060994.t1.exon6;Parent=MS.gene060994.t1 |
| 32437 | CDS | 18583 | 18727 | 18583 | ID=cds.MS.gene060994.t1;Parent=MS.gene060994.t1 |
| Gene Sequence |
| Protein sequence |
