Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061000.t1 | XP_024636842.1 | 96.3 | 404 | 15 | 0 | 1 | 404 | 10 | 413 | 1.40E-193 | 685.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061000.t1 | A0A396IFQ4 | 95.6 | 407 | 15 | 1 | 1 | 404 | 10 | 416 | 4.1e-192 | 680.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050438 | MS.gene061000 | 0.809777 | 1.60E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene061000 | 0.805957 | 1.04E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene061000 | 0.819859 | 9.31E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene061000 | 0.825773 | 3.90E-54 | -1.69E-46 |
| MS.gene054185 | MS.gene061000 | 0.8013 | 9.61E-49 | -1.69E-46 |
| MS.gene054433 | MS.gene061000 | 0.802652 | 5.07E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene061000 | 0.803305 | 3.71E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene061000 | 0.830082 | 3.59E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene061000 | 0.841882 | 3.63E-58 | -1.69E-46 |
| MS.gene060994 | MS.gene061000 | 0.996513 | 1.71E-228 | -1.69E-46 |
| MS.gene061000 | MS.gene061837 | -0.815993 | 6.95E-52 | -1.69E-46 |
| MS.gene061000 | MS.gene061838 | -0.808107 | 3.64E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene063114 | 0.802055 | 6.73E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene065042 | 0.81802 | 2.44E-52 | -1.69E-46 |
| MS.gene061000 | MS.gene06691 | 0.82444 | 8.06E-54 | -1.69E-46 |
| MS.gene061000 | MS.gene06900 | 0.832459 | 9.34E-56 | -1.69E-46 |
| MS.gene061000 | MS.gene071062 | 0.804027 | 2.63E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene07115 | 0.829177 | 5.96E-55 | -1.69E-46 |
| MS.gene061000 | MS.gene071529 | 0.806017 | 1.01E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene071772 | 0.824821 | 6.56E-54 | -1.69E-46 |
| MS.gene061000 | MS.gene072671 | 0.809016 | 2.33E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene073317 | 0.803621 | 3.20E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene07431 | 0.803324 | 3.68E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene22689 | 0.806471 | 8.10E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene22691 | 0.808464 | 3.06E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene23912 | 0.821329 | 4.28E-53 | -1.69E-46 |
| MS.gene061000 | MS.gene29790 | 0.806518 | 7.91E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene32786 | 0.803903 | 2.79E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene35485 | 0.806136 | 9.52E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene39104 | 0.802459 | 5.55E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene39299 | 0.807096 | 5.97E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene43917 | 0.84586 | 3.12E-59 | -1.69E-46 |
| MS.gene061000 | MS.gene43919 | 0.815984 | 6.99E-52 | -1.69E-46 |
| MS.gene061000 | MS.gene44398 | 0.82577 | 3.91E-54 | -1.69E-46 |
| MS.gene061000 | MS.gene45108 | 0.820546 | 6.48E-53 | -1.69E-46 |
| MS.gene061000 | MS.gene45771 | 0.807438 | 5.05E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene49824 | 0.811908 | 5.53E-51 | -1.69E-46 |
| MS.gene061000 | MS.gene50644 | 0.823264 | 1.52E-53 | -1.69E-46 |
| MS.gene061000 | MS.gene50700 | 0.80412 | 2.52E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene52399 | 0.814826 | 1.26E-51 | -1.69E-46 |
| MS.gene061000 | MS.gene55219 | -0.828119 | 1.07E-54 | -1.69E-46 |
| MS.gene061000 | MS.gene57565 | 0.816753 | 4.70E-52 | -1.69E-46 |
| MS.gene061000 | MS.gene57566 | 0.808367 | 3.21E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene57945 | 0.822167 | 2.74E-53 | -1.69E-46 |
| MS.gene061000 | MS.gene62154 | 0.808269 | 3.37E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene64621 | 0.82345 | 1.38E-53 | -1.69E-46 |
| MS.gene061000 | MS.gene65665 | 0.804897 | 1.73E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene65851 | 0.804644 | 1.96E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene66847 | 0.811257 | 7.67E-51 | -1.69E-46 |
| MS.gene061000 | MS.gene68168 | 0.827958 | 1.17E-54 | -1.69E-46 |
| MS.gene061000 | MS.gene68764 | 0.830788 | 2.41E-55 | -1.69E-46 |
| MS.gene061000 | MS.gene68907 | 0.813249 | 2.82E-51 | -1.69E-46 |
| MS.gene061000 | MS.gene68938 | 0.806723 | 7.16E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene70566 | 0.801802 | 7.58E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene73268 | 0.824844 | 6.48E-54 | -1.69E-46 |
| MS.gene061000 | MS.gene74030 | -0.808676 | 2.75E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene74031 | -0.809593 | 1.75E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene74587 | 0.805562 | 1.26E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene77301 | 0.819471 | 1.14E-52 | -1.69E-46 |
| MS.gene061000 | MS.gene79290 | 0.83055 | 2.76E-55 | -1.69E-46 |
| MS.gene061000 | MS.gene82769 | 0.812798 | 3.54E-51 | -1.69E-46 |
| MS.gene061000 | MS.gene84404 | 0.805075 | 1.59E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene86055 | 0.801285 | 9.68E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene90704 | 0.807653 | 4.55E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene93385 | 0.830938 | 2.22E-55 | -1.69E-46 |
| MS.gene061000 | MS.gene93892 | 0.803227 | 3.85E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene96276 | 0.806906 | 6.55E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene99165 | 0.801793 | 7.61E-49 | -1.69E-46 |
| MS.gene061000 | MS.gene99854 | 0.808438 | 3.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061000.t1 | AT3G06660 | 42.318 | 371 | 180 | 11 | 46 | 398 | 66 | 420 | 5.78e-62 | 206 |
| MS.gene061000.t1 | AT2G47350 | 38.760 | 387 | 183 | 13 | 44 | 400 | 123 | 485 | 6.02e-56 | 191 |
| MS.gene061000.t1 | AT1G56460 | 62.676 | 142 | 53 | 0 | 253 | 394 | 359 | 500 | 9.14e-52 | 181 |
| MS.gene061000.t1 | AT1G56460 | 62.676 | 142 | 53 | 0 | 253 | 394 | 389 | 530 | 1.72e-51 | 181 |
| MS.gene061000.t1 | AT1G56460 | 49.194 | 124 | 63 | 0 | 253 | 376 | 359 | 482 | 8.31e-26 | 109 |
Find 0 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGATATTAAATGAAT+TGG | - | 32439:551-570 | None:intergenic | 10.0% |
| !! | ACAATTATTATAGATAAAAT+TGG | + | 32439:2007-2026 | MS.gene061000:intron | 10.0% |
| !! | AATATTGCAAATTGAAATTA+TGG | + | 32439:611-630 | MS.gene061000:intron | 15.0% |
| !! | TAATTGATTGAAATTCAAAT+GGG | - | 32439:798-817 | None:intergenic | 15.0% |
| !! | TATAGTTGCATTATTATATA+TGG | - | 32439:878-897 | None:intergenic | 15.0% |
| !! | AAAGTTTGTAGTATAACATT+GGG | + | 32439:2943-2962 | MS.gene061000:intron | 20.0% |
| !! | AAATGTTTAGAAGAAAATCA+AGG | - | 32439:3387-3406 | None:intergenic | 20.0% |
| !! | AAGCAAATAAAATAAGATCA+AGG | - | 32439:1528-1547 | None:intergenic | 20.0% |
| !! | ACATACCATATAAATTTAGT+GGG | + | 32439:771-790 | MS.gene061000:intron | 20.0% |
| !! | ATAAAATTGTGAGATCTATA+AGG | - | 32439:2514-2533 | None:intergenic | 20.0% |
| !! | CTAATTGATTGAAATTCAAA+TGG | - | 32439:799-818 | None:intergenic | 20.0% |
| !! | TAAAGTTTGTAGTATAACAT+TGG | + | 32439:2942-2961 | MS.gene061000:intron | 20.0% |
| !! | TACATACCATATAAATTTAG+TGG | + | 32439:770-789 | MS.gene061000:intron | 20.0% |
| !! | TATATTTCCTTCAGATAAAT+TGG | + | 32439:894-913 | MS.gene061000:intron | 20.0% |
| !! | TTATGAATTAAGTGTATGTT+TGG | + | 32439:319-338 | MS.gene061000:intron | 20.0% |
| !!! | AATTATGGTTCTTCAATTTT+CGG | + | 32439:626-645 | MS.gene061000:intron | 20.0% |
| !!! | ATTTTTTACGCATTTTTACA+AGG | + | 32439:476-495 | MS.gene061000:intron | 20.0% |
| !!! | CTTTAAAGTTGAAACAATAT+AGG | - | 32439:3157-3176 | None:intergenic | 20.0% |
| !!! | TAGAAAAAAATTGATTCTAG+AGG | + | 32439:363-382 | MS.gene061000:intron | 20.0% |
| ! | AAAATCAATGCATCAAAAAG+AGG | + | 32439:1188-1207 | MS.gene061000:CDS | 25.0% |
| ! | AACTTTACAGAGTTATACAA+AGG | - | 32439:690-709 | None:intergenic | 25.0% |
| ! | AAGAAGCTTAAACTCAAATT+TGG | + | 32439:180-199 | MS.gene061000:CDS | 25.0% |
| ! | AGTGATGAATCAATATTAGA+AGG | + | 32439:1323-1342 | MS.gene061000:CDS | 25.0% |
| ! | ATCATCAGAAAAAGTTACTA+CGG | - | 32439:3269-3288 | None:intergenic | 25.0% |
| ! | CAATATTTCAGCATTACTTT+GGG | + | 32439:73-92 | MS.gene061000:CDS | 25.0% |
| ! | CACTTTCAATCAATATTTGA+TGG | - | 32439:2561-2580 | None:intergenic | 25.0% |
| ! | CTGAACAATTATGATTATTG+CGG | - | 32439:1403-1422 | None:intergenic | 25.0% |
| ! | GAATCATTCACATAAAAGAA+AGG | + | 32439:1061-1080 | MS.gene061000:CDS | 25.0% |
| ! | GAGAGATTAAGAAAAACTAT+AGG | + | 32439:2165-2184 | MS.gene061000:intron | 25.0% |
| ! | GTGATGAATCAATATTAGAA+GGG | + | 32439:1324-1343 | MS.gene061000:CDS | 25.0% |
| ! | GTTAATACCAATTTATCTGA+AGG | - | 32439:904-923 | None:intergenic | 25.0% |
| ! | TGAACAATTATGATTATTGC+GGG | - | 32439:1402-1421 | None:intergenic | 25.0% |
| ! | TGATCTTAAGAAGAATTACT+CGG | - | 32439:2482-2501 | None:intergenic | 25.0% |
| !! | AGATTGAATATTTGAAGTTG+AGG | - | 32439:842-861 | None:intergenic | 25.0% |
| !! | GAGAATTTTCTCATAATTAG+AGG | + | 32439:2138-2157 | MS.gene061000:intron | 25.0% |
| !! | GATTGAATATTTGAAGTTGA+GGG | - | 32439:841-860 | None:intergenic | 25.0% |
| !! | GGTTAGAATATTTTCTTAAG+TGG | + | 32439:2054-2073 | MS.gene061000:intron | 25.0% |
| !! | TCAGTTTCATACAACATTTT+GGG | - | 32439:1878-1897 | None:intergenic | 25.0% |
| !! | TGTATACTCGATTTAACTTA+TGG | - | 32439:1646-1665 | None:intergenic | 25.0% |
| !! | TTCAGTTTCATACAACATTT+TGG | - | 32439:1879-1898 | None:intergenic | 25.0% |
| !! | TTTTAGTACTTGATATGCTT+TGG | + | 32439:3405-3424 | MS.gene061000:intron | 25.0% |
| !! | TTTTTAATCACATCTTCTCT+TGG | - | 32439:1986-2005 | None:intergenic | 25.0% |
| !!! | AATCTAACTTTGAGATAATG+TGG | - | 32439:1495-1514 | None:intergenic | 25.0% |
| !!! | ACTTTAAAGTTCTAACATGT+TGG | + | 32439:3168-3187 | MS.gene061000:intron | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | + | 32439:389-408 | MS.gene061000:intron | 25.0% |
| !!! | CACTGAATTTATTTTCTTCT+TGG | - | 32439:1919-1938 | None:intergenic | 25.0% |
| !!! | GAATTGATTTTGACATGTTT+GGG | + | 32439:390-409 | MS.gene061000:intron | 25.0% |
| !!! | GTAACTTTTTCTGATGATAT+TGG | + | 32439:3271-3290 | MS.gene061000:CDS | 25.0% |
| !!! | GTAGTGCATATTACTTTTAA+TGG | + | 32439:2400-2419 | MS.gene061000:intron | 25.0% |
| !!! | TATCAGTGATTACTTTTACT+TGG | + | 32439:2342-2361 | MS.gene061000:intron | 25.0% |
| AAACAATATAGGAAGAAGGT+TGG | - | 32439:3146-3165 | None:intergenic | 30.0% | |
| AAGCTTAAACTCAAATTTGG+AGG | + | 32439:183-202 | MS.gene061000:CDS | 30.0% | |
| AGAAGAGATTTAGAGGTAAA+TGG | + | 32439:2199-2218 | MS.gene061000:intron | 30.0% | |
| AGGAAAAGATGAATAAGCAA+AGG | + | 32439:3086-3105 | MS.gene061000:CDS | 30.0% | |
| GCAATATTTCAGCATTACTT+TGG | + | 32439:72-91 | MS.gene061000:CDS | 30.0% | |
| GGAAAAGATGAATAAGCAAA+GGG | + | 32439:3087-3106 | MS.gene061000:CDS | 30.0% | |
| GTTGAAACAATATAGGAAGA+AGG | - | 32439:3150-3169 | None:intergenic | 30.0% | |
| TACCTCTAAATCTCTTCTAA+TGG | - | 32439:2197-2216 | None:intergenic | 30.0% | |
| TGTGTACAACTAATGTAAGT+GGG | + | 32439:2535-2554 | MS.gene061000:intron | 30.0% | |
| TTGACCAAGTATCTTCTTAA+TGG | - | 32439:3044-3063 | None:intergenic | 30.0% | |
| TTGATTCATCACTTGATGTA+GGG | - | 32439:1316-1335 | None:intergenic | 30.0% | |
| TTGTGTACAACTAATGTAAG+TGG | + | 32439:2534-2553 | MS.gene061000:intron | 30.0% | |
| ! | ACTCGATTTAACTTATGGTA+GGG | - | 32439:1641-1660 | None:intergenic | 30.0% |
| ! | ATTGATTCATCACTTGATGT+AGG | - | 32439:1317-1336 | None:intergenic | 30.0% |
| ! | ATTGGTGTAGCTTTTATAGT+AGG | + | 32439:2025-2044 | MS.gene061000:intron | 30.0% |
| ! | CTCTCTTTTTATCATAAGAG+CGG | - | 32439:986-1005 | None:intergenic | 30.0% |
| ! | TACTCGATTTAACTTATGGT+AGG | - | 32439:1642-1661 | None:intergenic | 30.0% |
| ! | TCTAAAACTAAGATGATCAG+AGG | - | 32439:2920-2939 | None:intergenic | 30.0% |
| ! | TCTCTTTTTATCATAAGAGC+GGG | - | 32439:985-1004 | None:intergenic | 30.0% |
| ! | TTGGTGTAGCTTTTATAGTA+GGG | + | 32439:2026-2045 | MS.gene061000:intron | 30.0% |
| !! | TTCTAAAGCTTCTCATCTAT+CGG | + | 32439:924-943 | MS.gene061000:intron | 30.0% |
| AAAAGTTACTACGGTTCCAT+TGG | - | 32439:3260-3279 | None:intergenic | 35.0% | |
| AAAGTTACTACGGTTCCATT+GGG | - | 32439:3259-3278 | None:intergenic | 35.0% | |
| AATGCAAAGTGGTCTATGTT+CGG | - | 32439:508-527 | None:intergenic | 35.0% | |
| AATTCATCCAAGTGCATGTT+TGG | - | 32439:587-606 | None:intergenic | 35.0% | |
| ACAAAGTGCAAGTTTAGCAA+AGG | + | 32439:1663-1682 | MS.gene061000:intron | 35.0% | |
| ACAACAAGCCATTAACCTAT+AGG | - | 32439:2314-2333 | None:intergenic | 35.0% | |
| ACAATTATGATTATTGCGGG+TGG | - | 32439:1399-1418 | None:intergenic | 35.0% | |
| ACGAAAAATTCAAGCTGAGA+AGG | + | 32439:2863-2882 | MS.gene061000:CDS | 35.0% | |
| AGCCATTAGAAGAGATTTAG+AGG | + | 32439:2192-2211 | MS.gene061000:intron | 35.0% | |
| AGTGTTTGATGCTAGATTGA+AGG | - | 32439:3218-3237 | None:intergenic | 35.0% | |
| ATATTAACCTTTGAGTGGGA+TGG | + | 32439:1760-1779 | MS.gene061000:intron | 35.0% | |
| ATGATAAAAAGAGAGGCCAT+GGG | + | 32439:991-1010 | MS.gene061000:CDS | 35.0% | |
| ATGGTATGTACATGATTTCG+TGG | - | 32439:760-779 | None:intergenic | 35.0% | |
| ATGTAACCAACCTACCTATA+TGG | + | 32439:2282-2301 | MS.gene061000:intron | 35.0% | |
| ATGTCAATAATGCTTGCAAC+TGG | - | 32439:1455-1474 | None:intergenic | 35.0% | |
| ATTATTACCTTAGCATTGCG+AGG | - | 32439:246-265 | None:intergenic | 35.0% | |
| ATTGCATCACAATTAACCCT+AGG | - | 32439:57-76 | None:intergenic | 35.0% | |
| CACTAATGCTTACAAGTATC+GGG | + | 32439:3508-3527 | MS.gene061000:CDS | 35.0% | |
| CGCTCTTATGATAAAAAGAG+AGG | + | 32439:984-1003 | MS.gene061000:CDS | 35.0% | |
| CTCTCACATTGTGTTTATGT+AGG | + | 32439:3012-3031 | MS.gene061000:intron | 35.0% | |
| GACATTGTATGCATATCTCT+AGG | + | 32439:2744-2763 | MS.gene061000:intron | 35.0% | |
| GACATTGTTTGGAAGATACT+TGG | - | 32439:3301-3320 | None:intergenic | 35.0% | |
| GCACTAATGCTTACAAGTAT+CGG | + | 32439:3507-3526 | MS.gene061000:CDS | 35.0% | |
| GGAGATATTAACCTTTGAGT+GGG | + | 32439:1756-1775 | MS.gene061000:intron | 35.0% | |
| GTGTTTGATGCTAGATTGAA+GGG | - | 32439:3217-3236 | None:intergenic | 35.0% | |
| TAAAAAGAGCAAGTTGTCAG+AGG | + | 32439:2806-2825 | MS.gene061000:CDS | 35.0% | |
| TATGATAAAAAGAGAGGCCA+TGG | + | 32439:990-1009 | MS.gene061000:CDS | 35.0% | |
| TCATACTGAGTTACGAAACA+AGG | - | 32439:2674-2693 | None:intergenic | 35.0% | |
| TCTTCCAAACAATGTCTAAC+AGG | + | 32439:3305-3324 | MS.gene061000:CDS | 35.0% | |
| TGGGTCCCACTAAATTTATA+TGG | - | 32439:779-798 | None:intergenic | 35.0% | |
| TGGTATGTACATGATTTCGT+GGG | - | 32439:759-778 | None:intergenic | 35.0% | |
| TGTACCTGTTAGACATTGTT+TGG | - | 32439:3312-3331 | None:intergenic | 35.0% | |
| TTGTAAGCATTAGTGCAGTT+TGG | - | 32439:3503-3522 | None:intergenic | 35.0% | |
| TTGTTTCGTAACTCAGTATG+AGG | + | 32439:2673-2692 | MS.gene061000:intron | 35.0% | |
| ! | AAAGTGAGTTGAATGCAAAG+TGG | - | 32439:519-538 | None:intergenic | 35.0% |
| ! | AGCTTTTATAGTAGGGAACA+TGG | + | 32439:2033-2052 | MS.gene061000:intron | 35.0% |
| ! | CTCGATTTAACTTATGGTAG+GGG | - | 32439:1640-1659 | None:intergenic | 35.0% |
| !! | ATATAGGTAGGTTGGTTACA+TGG | - | 32439:2283-2302 | None:intergenic | 35.0% |
| !! | GACACAATTGTTGTTTCTGA+TGG | + | 32439:135-154 | MS.gene061000:CDS | 35.0% |
| AAACCAACAGATTCCCTCTT+TGG | - | 32439:1356-1375 | None:intergenic | 40.0% | |
| ACAGCTAATCAAGAAAGCTG+AGG | + | 32439:2830-2849 | MS.gene061000:CDS | 40.0% | |
| ACTGAGTTACGAAACAAGGT+GGG | - | 32439:2670-2689 | None:intergenic | 40.0% | |
| AGAGGTAAATGGTCTCATGT+TGG | + | 32439:2210-2229 | MS.gene061000:intron | 40.0% | |
| AGCATTATTGACATCTCAGG+TGG | + | 32439:1461-1480 | MS.gene061000:intron | 40.0% | |
| AGGAAAGAACTATGAGGATC+GGG | + | 32439:1274-1293 | MS.gene061000:CDS | 40.0% | |
| AGTCACTTCGTATGGAATCA+AGG | - | 32439:1725-1744 | None:intergenic | 40.0% | |
| ATTTCATCCATCCCACTCAA+AGG | - | 32439:1770-1789 | None:intergenic | 40.0% | |
| CAAAGATCTCAATGGTGCAA+TGG | + | 32439:1942-1961 | MS.gene061000:intron | 40.0% | |
| CAGGAAAGAACTATGAGGAT+CGG | + | 32439:1273-1292 | MS.gene061000:CDS | 40.0% | |
| CAGTGTCACAAAGATCTCAA+TGG | + | 32439:1934-1953 | MS.gene061000:intron | 40.0% | |
| CCTATAGGTGAGATCCATAT+AGG | - | 32439:2299-2318 | None:intergenic | 40.0% | |
| CCTATATGGATCTCACCTAT+AGG | + | 32439:2296-2315 | MS.gene061000:intron | 40.0% | |
| CGTAAACTGTATCAAGACCT+TGG | - | 32439:3122-3141 | None:intergenic | 40.0% | |
| CTGATGAGGAAAATACTAGC+TGG | + | 32439:2116-2135 | MS.gene061000:intron | 40.0% | |
| CTTTCAAAGATGCGCTATCT+GGG | + | 32439:1429-1448 | MS.gene061000:CDS | 40.0% | |
| GCAAGCATTATTGACATCTC+AGG | + | 32439:1458-1477 | MS.gene061000:CDS | 40.0% | |
| GCAGCCATTAAGAAGATACT+TGG | + | 32439:3037-3056 | MS.gene061000:CDS | 40.0% | |
| GGATCTCACCTATAGGTTAA+TGG | + | 32439:2303-2322 | MS.gene061000:intron | 40.0% | |
| GGGAGATATTAACCTTTGAG+TGG | + | 32439:1755-1774 | MS.gene061000:intron | 40.0% | |
| GGTGTTTGTAAAGATGCATC+AGG | + | 32439:1254-1273 | MS.gene061000:CDS | 40.0% | |
| GTAACAACCAAGACTGCAAA+GGG | - | 32439:3552-3571 | None:intergenic | 40.0% | |
| GTATTTGCAAGAGCTTCTAC+TGG | + | 32439:661-680 | MS.gene061000:intron | 40.0% | |
| TAACAACCAAGACTGCAAAG+GGG | - | 32439:3551-3570 | None:intergenic | 40.0% | |
| TACTGAGTTACGAAACAAGG+TGG | - | 32439:2671-2690 | None:intergenic | 40.0% | |
| TAGCATCAAACACTGTTCGA+TGG | + | 32439:3224-3243 | MS.gene061000:CDS | 40.0% | |
| TAGGTGAGATCCATATAGGT+AGG | - | 32439:2295-2314 | None:intergenic | 40.0% | |
| TATCTCCTAGTCACTTCGTA+TGG | - | 32439:1733-1752 | None:intergenic | 40.0% | |
| TATTGACATCTCAGGTGGTT+TGG | + | 32439:1466-1485 | MS.gene061000:intron | 40.0% | |
| TCTTTCAAAGATGCGCTATC+TGG | + | 32439:1428-1447 | MS.gene061000:CDS | 40.0% | |
| TGAGATCCATATAGGTAGGT+TGG | - | 32439:2291-2310 | None:intergenic | 40.0% | |
| TGATAAAAAGAGAGGCCATG+GGG | + | 32439:992-1011 | MS.gene061000:CDS | 40.0% | |
| TGATTCCATACGAAGTGACT+AGG | + | 32439:1725-1744 | MS.gene061000:intron | 40.0% | |
| TGCATCAGGAAAGAACTATG+AGG | + | 32439:1268-1287 | MS.gene061000:CDS | 40.0% | |
| TGTAACAACCAAGACTGCAA+AGG | - | 32439:3553-3572 | None:intergenic | 40.0% | |
| TTGAGTGGGATGGATGAAAT+AGG | + | 32439:1770-1789 | MS.gene061000:intron | 40.0% | |
| ! | AGTGGATTTAGCAAGTTACG+AGG | + | 32439:2072-2091 | MS.gene061000:intron | 40.0% |
| ! | CAATTAACCCTAGGTTTTCG+TGG | - | 32439:48-67 | None:intergenic | 40.0% |
| ! | GATTTAACTTATGGTAGGGG+CGG | - | 32439:1637-1656 | None:intergenic | 40.0% |
| ! | TATCGGTTATCAATGCATGC+AGG | + | 32439:941-960 | MS.gene061000:intron | 40.0% |
| ! | TTCTAACATGTTGGTTGTGC+AGG | + | 32439:3177-3196 | MS.gene061000:intron | 40.0% |
| !! | AAACACTGTTCGATGGACTA+TGG | + | 32439:3231-3250 | MS.gene061000:CDS | 40.0% |
| !! | AACACTGTTCGATGGACTAT+GGG | + | 32439:3232-3251 | MS.gene061000:CDS | 40.0% |
| AAGAGGAGTTAGTCGCCATA+AGG | + | 32439:1205-1224 | MS.gene061000:CDS | 45.0% | |
| AAGCCAAAGAGGGAATCTGT+TGG | + | 32439:1350-1369 | MS.gene061000:CDS | 45.0% | |
| ACGAAGTGACTAGGAGATAG+AGG | + | 32439:1734-1753 | MS.gene061000:intron | 45.0% | |
| AGAAGGGAAGAAGCCAAAGA+GGG | + | 32439:1340-1359 | MS.gene061000:CDS | 45.0% | |
| AGTAACTCGCTTGCTCTTAC+GGG | - | 32439:1102-1121 | None:intergenic | 45.0% | |
| AGTCGCCATAAGGACAATCA+AGG | + | 32439:1215-1234 | MS.gene061000:CDS | 45.0% | |
| AGTTACTGAGAGATGTGCCA+TGG | + | 32439:1115-1134 | MS.gene061000:CDS | 45.0% | |
| CACTGAACCAAACATGCACT+TGG | + | 32439:577-596 | MS.gene061000:intron | 45.0% | |
| CAGTAACTCGCTTGCTCTTA+CGG | - | 32439:1103-1122 | None:intergenic | 45.0% | |
| CGAAGTGACTAGGAGATAGA+GGG | + | 32439:1735-1754 | MS.gene061000:intron | 45.0% | |
| CTAATAGGCTCGTGCATGTT+GGG | + | 32439:2235-2254 | MS.gene061000:intron | 45.0% | |
| CTGAGTTACGAAACAAGGTG+GGG | - | 32439:2669-2688 | None:intergenic | 45.0% | |
| GCAAAGGGATGAAATAGCCA+AGG | + | 32439:3102-3121 | MS.gene061000:CDS | 45.0% | |
| GCTTAACCAATTTGTCCCCA+TGG | - | 32439:1010-1029 | None:intergenic | 45.0% | |
| GGTCTCATGTTGGACCTAAT+AGG | + | 32439:2220-2239 | MS.gene061000:intron | 45.0% | |
| TACCTTAGCATTGCGAGGAT+CGG | - | 32439:241-260 | None:intergenic | 45.0% | |
| TACTTGGTCAAGATCCTGCT+AGG | + | 32439:3053-3072 | MS.gene061000:CDS | 45.0% | |
| TAGAAGGGAAGAAGCCAAAG+AGG | + | 32439:1339-1358 | MS.gene061000:CDS | 45.0% | |
| TCCTCTTTCTTCTTCCTAGC+AGG | - | 32439:3070-3089 | None:intergenic | 45.0% | |
| TCCTGCTAGGAAGAAGAAAG+AGG | + | 32439:3066-3085 | MS.gene061000:CDS | 45.0% | |
| TGATGTGCCACGAAAACCTA+GGG | + | 32439:38-57 | MS.gene061000:CDS | 45.0% | |
| TGCCTCCTTGATTGTCCTTA+TGG | - | 32439:1223-1242 | None:intergenic | 45.0% | |
| ! | CAAGTGCATGTTTGGTTCAG+TGG | - | 32439:579-598 | None:intergenic | 45.0% |
| ! | TGTATGTTTGGTTCCACGTC+TGG | + | 32439:331-350 | MS.gene061000:intron | 45.0% |
| !! | CAGCGTTGAGCTGTTTCTAT+AGG | - | 32439:2099-2118 | None:intergenic | 45.0% |
| !! | TCAATGGTGCAATGGACTAG+TGG | + | 32439:1950-1969 | MS.gene061000:intron | 45.0% |
| !!! | TACAAATTTTAAATTAATAA+TGG | + | 32439:2427-2446 | MS.gene061000:intron | 5.0% |
| AAGCTTCCCCTTTGCAGTCT+TGG | + | 32439:3542-3561 | MS.gene061000:CDS | 50.0% | |
| AGAGATGTGCCATGGATGTG+GGG | + | 32439:1123-1142 | MS.gene061000:CDS | 50.0% | |
| AGTTACGAAACAAGGTGGGG+AGG | - | 32439:2666-2685 | None:intergenic | 50.0% | |
| CCAACATGCACGAGCCTATT+AGG | - | 32439:2237-2256 | None:intergenic | 50.0% | |
| CCTAATAGGCTCGTGCATGT+TGG | + | 32439:2234-2253 | MS.gene061000:intron | 50.0% | |
| CGCCATAAGGACAATCAAGG+AGG | + | 32439:1218-1237 | MS.gene061000:CDS | 50.0% | |
| GAAACAGCTCAACGCTGATG+AGG | + | 32439:2102-2121 | MS.gene061000:intron | 50.0% | |
| GAGAGATGTGCCATGGATGT+GGG | + | 32439:1122-1141 | MS.gene061000:CDS | 50.0% | |
| GAGGAGTCACGTTCAAACCT+CGG | - | 32439:2901-2920 | None:intergenic | 50.0% | |
| GTGATGTGCCACGAAAACCT+AGG | + | 32439:37-56 | MS.gene061000:CDS | 50.0% | |
| TCAAGCTGAGAAGGCAGCTA+GGG | + | 32439:2872-2891 | MS.gene061000:CDS | 50.0% | |
| TCTATTGTCTCCACCAGACG+TGG | - | 32439:347-366 | None:intergenic | 50.0% | |
| TGAGAGATGTGCCATGGATG+TGG | + | 32439:1121-1140 | MS.gene061000:CDS | 50.0% | |
| TTCAAGCTGAGAAGGCAGCT+AGG | + | 32439:2871-2890 | MS.gene061000:CDS | 50.0% | |
| TTCCGATCCTCGCAATGCTA+AGG | + | 32439:236-255 | MS.gene061000:CDS | 50.0% | |
| TTGCGGGTGGAATGCTTTCT+TGG | - | 32439:1386-1405 | None:intergenic | 50.0% | |
| ! | ACCTGCGCACTTTTCTCTTG+GGG | - | 32439:3480-3499 | None:intergenic | 50.0% |
| ! | ATGTTTGGTTCCACGTCTGG+TGG | + | 32439:334-353 | MS.gene061000:intron | 50.0% |
| ! | GACCTGCGCACTTTTCTCTT+GGG | - | 32439:3481-3500 | None:intergenic | 50.0% |
| ! | GCAAAGGGGAAGCTTTGACT+TGG | - | 32439:3537-3556 | None:intergenic | 50.0% |
| ATCGCTACACCCCACATCCA+TGG | - | 32439:1135-1154 | None:intergenic | 55.0% | |
| GAGAGGCCATGGGGACAAAT+TGG | + | 32439:1001-1020 | MS.gene061000:CDS | 55.0% | |
| GCATTGCGAGGATCGGAAGA+AGG | - | 32439:234-253 | None:intergenic | 55.0% | |
| ! | ATGTAATGCGAAGCACCCCC+CGG | + | 32439:2638-2657 | MS.gene061000:intron | 55.0% |
| ! | CAAGGAGGCACAACAATGCG+TGG | + | 32439:1233-1252 | MS.gene061000:CDS | 55.0% |
| ! | CCTGCGCACTTTTCTCTTGG+GGG | - | 32439:3479-3498 | None:intergenic | 55.0% |
| ! | GGACCTGCGCACTTTTCTCT+TGG | - | 32439:3482-3501 | None:intergenic | 55.0% |
| !! | CGATGGACTATGGGTCCCAA+TGG | + | 32439:3241-3260 | MS.gene061000:CDS | 55.0% |
| AAACAAGGTGGGGAGGACCC+GGG | - | 32439:2659-2678 | None:intergenic | 60.0% | |
| AGCTGAGAAGGCAGCTAGGG+AGG | + | 32439:2875-2894 | MS.gene061000:CDS | 60.0% | |
| GAAACAAGGTGGGGAGGACC+CGG | - | 32439:2660-2679 | None:intergenic | 60.0% | |
| GCGAGGATCGGAAGAAGGCT+TGG | - | 32439:229-248 | None:intergenic | 60.0% | |
| ! | CCCCCAAGAGAAAAGTGCGC+AGG | + | 32439:3476-3495 | MS.gene061000:CDS | 60.0% |
| ! | GCGCACTTTTCTCTTGGGGG+AGG | - | 32439:3476-3495 | None:intergenic | 60.0% |
| ! | TGTAATGCGAAGCACCCCCC+GGG | + | 32439:2639-2658 | MS.gene061000:intron | 60.0% |
| AACAAGGTGGGGAGGACCCG+GGG | - | 32439:2658-2677 | None:intergenic | 65.0% | |
| ACAAGGTGGGGAGGACCCGG+GGG | - | 32439:2657-2676 | None:intergenic | 70.0% | |
| GAAGGCAGCTAGGGAGGCCG+AGG | + | 32439:2881-2900 | MS.gene061000:CDS | 70.0% | |
| CAAGGTGGGGAGGACCCGGG+GGG | - | 32439:2656-2675 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32439 | gene | 21 | 3613 | 21 | ID=MS.gene061000 |
| 32439 | mRNA | 21 | 3613 | 21 | ID=MS.gene061000.t1;Parent=MS.gene061000 |
| 32439 | exon | 21 | 257 | 21 | ID=MS.gene061000.t1.exon1;Parent=MS.gene061000.t1 |
| 32439 | CDS | 21 | 257 | 21 | ID=cds.MS.gene061000.t1;Parent=MS.gene061000.t1 |
| 32439 | exon | 963 | 1479 | 963 | ID=MS.gene061000.t1.exon2;Parent=MS.gene061000.t1 |
| 32439 | CDS | 963 | 1479 | 963 | ID=cds.MS.gene061000.t1;Parent=MS.gene061000.t1 |
| 32439 | exon | 2805 | 2902 | 2805 | ID=MS.gene061000.t1.exon3;Parent=MS.gene061000.t1 |
| 32439 | CDS | 2805 | 2902 | 2805 | ID=cds.MS.gene061000.t1;Parent=MS.gene061000.t1 |
| 32439 | exon | 3034 | 3123 | 3034 | ID=MS.gene061000.t1.exon4;Parent=MS.gene061000.t1 |
| 32439 | CDS | 3034 | 3123 | 3034 | ID=cds.MS.gene061000.t1;Parent=MS.gene061000.t1 |
| 32439 | exon | 3199 | 3326 | 3199 | ID=MS.gene061000.t1.exon5;Parent=MS.gene061000.t1 |
| 32439 | CDS | 3199 | 3326 | 3199 | ID=cds.MS.gene061000.t1;Parent=MS.gene061000.t1 |
| 32439 | exon | 3469 | 3613 | 3469 | ID=MS.gene061000.t1.exon6;Parent=MS.gene061000.t1 |
| 32439 | CDS | 3469 | 3613 | 3469 | ID=cds.MS.gene061000.t1;Parent=MS.gene061000.t1 |
| Gene Sequence |
| Protein sequence |
