AlfalfaGEDB | MS.gene08120

M. sativa cultivar XinJiangDaYe / MS.gene08120

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08120.t1	XP_013460125.1	98.3	344	6	0	111	454	110	453	2.20E-192	681.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08120.t1	Q9FIL7	65.5	296	101	1	117	411	135	430	8.9e-110	398.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08120.t1	A0A072UXI6	98.3	344	6	0	111	454	110	453	1.6e-192	681.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene08120	0.832606	8.59E-56	-1.69E-46
MS.gene04998	MS.gene08120	0.809865	1.53E-50	-1.69E-46
MS.gene050379	MS.gene08120	0.805492	1.30E-49	-1.69E-46
MS.gene050961	MS.gene08120	0.812606	3.90E-51	-1.69E-46
MS.gene051226	MS.gene08120	0.812256	4.64E-51	-1.69E-46
MS.gene051959	MS.gene08120	0.854219	1.42E-61	-1.69E-46
MS.gene051960	MS.gene08120	0.850165	2.02E-60	-1.69E-46
MS.gene052053	MS.gene08120	0.813349	2.68E-51	-1.69E-46
MS.gene052118	MS.gene08120	0.807707	4.43E-50	-1.69E-46
MS.gene053602	MS.gene08120	0.816063	6.71E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene006416	MS.gene08120	PPI
MS.gene08120	MS.gene48439	PPI
MS.gene08120	MS.gene006415	PPI
MS.gene08120	MS.gene013044	PPI
MS.gene08120	MS.gene020408	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08120.t1	MTR_3g462390	95.374	454	20	1	1	454	1	453	0.0	837
MS.gene08120.t1	MTR_3g462390	98.240	341	6	0	114	454	1	341	0.0	706
MS.gene08120.t1	MTR_5g069600	62.771	462	152	8	1	454	1	450	0.0	545
MS.gene08120.t1	MTR_8g028880	62.791	301	110	2	113	411	119	419	4.99e-144	419
MS.gene08120.t1	MTR_4g115630	49.284	349	176	1	61	409	148	495	6.54e-112	339
MS.gene08120.t1	MTR_8g063300	37.942	311	186	6	91	398	27	333	1.27e-66	218
MS.gene08120.t1	MTR_2g084120	41.176	306	169	5	113	410	76	378	4.77e-66	218
MS.gene08120.t1	MTR_7g082530	40.575	313	175	6	101	408	333	639	5.00e-66	224
MS.gene08120.t1	MTR_7g082530	40.575	313	175	6	101	408	333	639	6.25e-66	224
MS.gene08120.t1	MTR_4g061833	40.413	339	188	9	73	406	291	620	1.03e-65	223

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08120.t1	AT5G58940	60.896	335	129	2	78	411	97	430	3.58e-142	415
MS.gene08120.t1	AT5G58940	60.896	335	129	2	78	411	97	430	3.58e-142	415
MS.gene08120.t1	AT5G58940	60.896	335	129	2	78	411	97	430	3.58e-142	415
MS.gene08120.t1	AT5G58940	60.896	335	129	2	78	411	97	430	3.58e-142	415
MS.gene08120.t1	AT4G00330	59.736	303	118	2	117	415	107	409	3.12e-134	393
MS.gene08120.t1	AT4G00330	59.736	303	118	2	117	415	107	409	3.12e-134	393
MS.gene08120.t1	AT2G11520	50.000	348	164	3	74	412	161	507	2.54e-113	343
MS.gene08120.t1	AT3G59110	40.000	310	179	5	110	416	170	475	1.23e-68	227
MS.gene08120.t1	AT2G42960	40.878	296	168	6	110	402	163	454	5.01e-66	220
MS.gene08120.t1	AT2G42960	40.878	296	168	6	110	402	163	454	5.01e-66	220

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Find 88 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAAGTTGGTCACAAAAG+TGG	0.549155	3.3:-50014522	MS.gene08120:CDS
AAGAATAGACATAAGACATT+TGG	0.425987	3.3:-50012089	MS.gene08120:CDS
AAGAGCGATGTTTATTCGTT+TGG	0.366493	3.3:-50012658	MS.gene08120:CDS
AAGAGGTTCTATGGGAAATT+CGG	0.402546	3.3:-50012196	MS.gene08120:CDS
AAGATTGGTGAAGGAGCTTT+TGG	0.274185	3.3:-50014007	MS.gene08120:CDS
AATGATGACAGGAAGACATC+CGG	0.590879	3.3:-50012620	MS.gene08120:CDS
AATGCAGGTGTGAGGGGAAA+TGG	0.402205	3.3:-50013110	MS.gene08120:intron
AATGCCTTGCACCTGTGAGA+CGG	0.631669	3.3:-50012244	MS.gene08120:CDS
AATGGGAAATTTCTCATTTG+AGG	0.410367	3.3:-50014068	MS.gene08120:CDS
AATTATGCTGAGACAAATTG+AGG	0.573770	3.3:+50012047	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGGAAATTTCTCATTTG+AGG	-	chr3.3:50012554-50012573	MS.gene08120:intron	30.0%
AATGTAGAATACGTTGTGAT+TGG	-	chr3.3:50014140-50014159	MS.gene08120:CDS	30.0%
AATTATTAATGCAGGTGTGA+GGG	-	chr3.3:50013505-50013524	MS.gene08120:intron	30.0%
AATTGTAACTCTCTCATTGA+GGG	+	chr3.3:50014043-50014062	None:intergenic	30.0%
ATCTGTCAATCCAACAATAA+GGG	+	chr3.3:50013752-50013771	None:intergenic	30.0%
ATGTAGAATACGTTGTGATT+GGG	-	chr3.3:50014141-50014160	MS.gene08120:CDS	30.0%
ATTTACCTGTGTACATATGA+AGG	+	chr3.3:50013595-50013614	None:intergenic	30.0%
CTTAATAACAGACAGTCTAA+GGG	-	chr3.3:50013810-50013829	MS.gene08120:intron	30.0%
GTTGAAATATGAGTTGCATT+AGG	+	chr3.3:50013880-50013899	None:intergenic	30.0%
TAATTGTAACTCTCTCATTG+AGG	+	chr3.3:50014044-50014063	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	50012049	50014595	50012049	ID=MS.gene08120
chr3.3	mRNA	50012049	50014595	50012049	ID=MS.gene08120.t1;Parent=MS.gene08120
chr3.3	exon	50014355	50014595	50014355	ID=MS.gene08120.t1.exon1;Parent=MS.gene08120.t1
chr3.3	CDS	50014355	50014595	50014355	ID=cds.MS.gene08120.t1;Parent=MS.gene08120.t1
chr3.3	exon	50013946	50014187	50013946	ID=MS.gene08120.t1.exon2;Parent=MS.gene08120.t1
chr3.3	CDS	50013946	50014187	50013946	ID=cds.MS.gene08120.t1;Parent=MS.gene08120.t1
chr3.3	exon	50013230	50013395	50013230	ID=MS.gene08120.t1.exon3;Parent=MS.gene08120.t1
chr3.3	CDS	50013230	50013395	50013230	ID=cds.MS.gene08120.t1;Parent=MS.gene08120.t1
chr3.3	exon	50013036	50013125	50013036	ID=MS.gene08120.t1.exon4;Parent=MS.gene08120.t1
chr3.3	CDS	50013036	50013125	50013036	ID=cds.MS.gene08120.t1;Parent=MS.gene08120.t1
chr3.3	exon	50012576	50012874	50012576	ID=MS.gene08120.t1.exon5;Parent=MS.gene08120.t1
chr3.3	CDS	50012576	50012874	50012576	ID=cds.MS.gene08120.t1;Parent=MS.gene08120.t1
chr3.3	exon	50012049	50012375	50012049	ID=MS.gene08120.t1.exon6;Parent=MS.gene08120.t1
chr3.3	CDS	50012049	50012375	50012049	ID=cds.MS.gene08120.t1;Parent=MS.gene08120.t1

Gene Sequence

>MS.gene08120

ATGAAGAAACCATCAAACCCAACAAACTTGCATCAATCTAACCAAAGAAAAAAGAAAGTTGGTCACAAAAGTGGTAGTGCAAGCAATACCAATGGCACAAATAGGAACAATCATGAGCATAATCATAGTACTATGACATATTTCAAATCTGTTTTCAAAAGCCTTTTTGCATTGATAACAAAAACAACCTCAGAAGCTGTTGAAAATGATTCCTCAAGGAATAAAGTCAGAGGAGTATCATGTAAGTATGATCAATATTTTACAATTTATTTAATTATTATGTTTTTTTTTTATGGTCAACCCTTTATCTATATTTGTTTTGAGATTATGAAAAAGGAAAACTTTTTTTATTTATATGTGATCATAGTCATGTGTTTTGTAGAATTAAGATTTTATTGGAATTTGCAGCTTCAACAGATGTATCAACTGATAGTCCAAAGAGTTCATCAAAATGGAAAACTTCTCAATCTTCAACACCAACTAGCACTTCAAGAAGTCAGCTTGGAATGGGAAATTTCTCATTTGAGGAACTTTACAAGGCAACAGGAAAATTCTCTCCAGATAATAAGATTGGTGAAGGAGCTTTTGGAATTGTATATAAGGGAAGGCTTTATGATGGATCTCTTGTGGCTGTGAAGTGTGCCAGGAAGGTATGCCATGAAAAAGTTCATTTTTTGATCATTTCTCATATGTAGAACTAGTTCAAATGTGATTGAAATTGGTGTGTGTTTGGTTCTGCCGTGACAAAAAATAATTTTGAATGAGTTGATTTTGTAAAATTGATTCAGACTAAAATAAAATGATTTATGTTTGGACATTAACGTGTGATGAAATGTGATTGAAATTGGTGTGTGTTTGGTTCTGTGGTTACAAAAATTAATTTTGAATGAGTTGATTTTATAAAATTGATTCAGGCTAAAAGTGAGTTGAATGTAAAATGATTTATGTTTGGACATAAACGTGTGTTGAGCAATAAACTTGAGGGTAAAAATCAATTTGTATAAGCAAGAACTCAAAATACTAGCTTCAAGTTAGAATCGATTCTAGAGGCAAAATCAATTAATTAGACACGAACCAATTCAAACATGTCATAATCAATTCTACACTTTTGGAATCAATTTTGCTTAGTGCAAAAGTGAAACCAAACATAAACAGTTTGTTAGTTTTTATACATTCTGATATAGCAATGTTTATTGACAGGATGTACAAAAGAAGCACTTGGCTGAGTTCAAGAATGAAATAAACACCTTGTCAAAAATTGAGCATCTGAATCTTGTGAGGTGGTATGGATATTTGGAGCATGGAGATGATAAGATTATTGTTATTGAATATGTAAATAATGGAACTCTCAGGGAACATTTAGATGGTAAGTCCAAGAACTGGCCTACTGAAGTATATATTATCTTTATAATCAATTCCTATAGCATAAAAATGATATAATGTCATAGAGATTGTCAATTATTAATGCAGGTGTGAGGGGAAATGGACTAGAAATTAGTGAGCGTCTAGACATAGCGATTGATGTAGCTCACGCAATTACATACCTTCATATGTACACAGGTAAATATCTTTATAAAACTAGTCATATAAGTTGCTTTTGACTTGACTTCACATGTTGTTTTCATAAGCTCTCCCAAACGGTCGCAGAAGTGTTTATGCTAACAAATTCATTGTCGTGTTATTTATGTTCTTACAATGATCCCTTATTGTTGGATTGACAGATCATCCAATCATTCACAGAGACATCAAAGCATCAAATATCTTAATAACAGACAGTCTAAGGGCAAAAGTGGCAGACTTTGGTTTTGCAAGGTTGGCTCCAGAAGACCCTAATGCAACTCATATTTCAACTCAAGTTAAAGGAACAGCTGGTTACTTAGATCCTGATTATATGAGAACACGCCAACTCTCTGAAAAGAGCGATGTTTATTCGTTTGGCGTGTTACTTGTTGAAATGATGACAGGAAGACATCCGGTTGAACCAAAGAAACCCCTCAATGAGAGAGTTACAATTAAATGGGTAAGTACTTATGTCAAACTAATCTCCTAATTATAAAGATAGTATTTATACTTATTATGAGTGTATAGATCAATGTAGAATACGTTGTGATTGGGATCGAACTCGTATACTTCTGATCGATTTAATTTACAACTTACGAACAACTTGATCATGAATCATTTAATGGATTAGACTAACATAGTTTGCATGTATGTATGCAGGCAATGCAGTTGTTAAAACAAGGAGAAGCTGTGATTGCAATGGATCCAAGGCTTAGGAGAAGTTCAGCCTCAAACAAAGCTGTACAAAAAGTTCTCAAGCTTGCTTTCCAATGCCTTGCACCTGTGAGACGGTTGCGGCCATCGATGAAGAATTGTCAAGAGGTTCTATGGGAAATTCGGAAAGAGTTTAGAGACAGAGTCTCTTCTCGTACTCCTCCCATTGGTTCTCACCATTCTTCAAACTTTCCTCAGACAGATTCTAGAAAGAATAGACATAAGACATTTGGTGTTGCAGGCAATAAGAGACCTCAATTTGTCTCAGCATAA

Protein sequence

>MS.gene08120.t1

MKKPSNPTNLHQSNQRKKKVGHKSGSASNTNGTNRNNHEHNHSTMTYFKSVFKSLFALITKTTSEAVENDSSRNKVRGVSSSTDVSTDSPKSSSKWKTSQSSTPTSTSRSQLGMGNFSFEELYKATGKFSPDNKIGEGAFGIVYKGRLYDGSLVAVKCARKDVQKKHLAEFKNEINTLSKIEHLNLVRWYGYLEHGDDKIIVIEYVNNGTLREHLDGVRGNGLEISERLDIAIDVAHAITYLHMYTDHPIIHRDIKASNILITDSLRAKVADFGFARLAPEDPNATHISTQVKGTAGYLDPDYMRTRQLSEKSDVYSFGVLLVEMMTGRHPVEPKKPLNERVTIKWAMQLLKQGEAVIAMDPRLRRSSASNKAVQKVLKLAFQCLAPVRRLRPSMKNCQEVLWEIRKEFRDRVSSRTPPIGSHHSSNFPQTDSRKNRHKTFGVAGNKRPQFVSA