Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09930.t1 | XP_003611238.2 | 95.8 | 671 | 15 | 2 | 1 | 660 | 1 | 669 | 0.00E+00 | 1254.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09930.t1 | Q9C5X3 | 74.0 | 670 | 160 | 6 | 1 | 660 | 1 | 666 | 5.5e-286 | 984.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09930.t1 | G7KG68 | 95.8 | 671 | 15 | 2 | 1 | 660 | 1 | 669 | 0.0e+00 | 1254.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene09930 | 0.817355 | 3.44E-52 | -1.69E-46 |
| MS.gene049283 | MS.gene09930 | 0.810221 | 1.28E-50 | -1.69E-46 |
| MS.gene049669 | MS.gene09930 | 0.813857 | 2.07E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene09930 | 0.809712 | 1.65E-50 | -1.69E-46 |
| MS.gene050105 | MS.gene09930 | 0.813078 | 3.07E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene09930 | 0.817652 | 2.95E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene09930 | 0.812531 | 4.05E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene09930 | 0.813513 | 2.46E-51 | -1.69E-46 |
| MS.gene051122 | MS.gene09930 | 0.802579 | 5.25E-49 | -1.69E-46 |
| MS.gene051368 | MS.gene09930 | 0.811174 | 7.99E-51 | -1.69E-46 |
| MS.gene051832 | MS.gene09930 | 0.823949 | 1.05E-53 | -1.69E-46 |
| MS.gene052500 | MS.gene09930 | 0.82071 | 5.94E-53 | -1.69E-46 |
| MS.gene052502 | MS.gene09930 | 0.817889 | 2.61E-52 | -1.69E-46 |
| MS.gene052586 | MS.gene09930 | 0.828886 | 7.01E-55 | -1.69E-46 |
| MS.gene052826 | MS.gene09930 | 0.82119 | 4.61E-53 | -1.69E-46 |
| MS.gene052954 | MS.gene09930 | 0.831411 | 1.70E-55 | -1.69E-46 |
| MS.gene053006 | MS.gene09930 | 0.820014 | 8.58E-53 | -1.69E-46 |
| MS.gene053963 | MS.gene09930 | 0.83101 | 2.13E-55 | -1.69E-46 |
| MS.gene054222 | MS.gene09930 | 0.801726 | 7.86E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene09930 | 0.831946 | 1.25E-55 | -1.69E-46 |
| MS.gene054576 | MS.gene09930 | 0.800394 | 1.47E-48 | -1.69E-46 |
| MS.gene055586 | MS.gene09930 | 0.818643 | 1.76E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene09930 | 0.811115 | 8.23E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene09930 | 0.817187 | 3.75E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene09930 | 0.825968 | 3.51E-54 | -1.69E-46 |
| MS.gene05659 | MS.gene09930 | 0.806071 | 9.83E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene09930 | 0.810578 | 1.08E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene09930 | 0.8432 | 1.62E-58 | -1.69E-46 |
| MS.gene057208 | MS.gene09930 | 0.820836 | 5.56E-53 | -1.69E-46 |
| MS.gene05795 | MS.gene09930 | 0.801729 | 7.85E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene09930 | 0.80577 | 1.14E-49 | -1.69E-46 |
| MS.gene058635 | MS.gene09930 | 0.801998 | 6.91E-49 | -1.69E-46 |
| MS.gene058897 | MS.gene09930 | 0.814818 | 1.27E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene09930 | 0.802171 | 6.37E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene09930 | 0.821798 | 3.33E-53 | -1.69E-46 |
| MS.gene059952 | MS.gene09930 | 0.807787 | 4.26E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene09930 | 0.802945 | 4.41E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene09930 | 0.853335 | 2.56E-61 | -1.69E-46 |
| MS.gene060935 | MS.gene09930 | 0.811182 | 7.96E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene09930 | 0.812792 | 3.55E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09930 | MS.gene50283 | PPI |
| MS.gene066610 | MS.gene09930 | PPI |
| MS.gene99119 | MS.gene09930 | PPI |
| MS.gene99067 | MS.gene09930 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09930.t1 | MTR_5g011790 | 95.827 | 671 | 15 | 2 | 1 | 660 | 1 | 669 | 0.0 | 1326 |
| MS.gene09930.t1 | MTR_5g011790 | 95.659 | 622 | 14 | 2 | 50 | 660 | 1 | 620 | 0.0 | 1228 |
| MS.gene09930.t1 | MTR_5g011790 | 95.447 | 593 | 14 | 2 | 1 | 582 | 1 | 591 | 0.0 | 1170 |
| MS.gene09930.t1 | MTR_4g102120 | 82.470 | 656 | 106 | 5 | 12 | 660 | 13 | 666 | 0.0 | 1142 |
| MS.gene09930.t1 | MTR_4g023610 | 62.100 | 657 | 234 | 5 | 1 | 643 | 1 | 656 | 0.0 | 854 |
| MS.gene09930.t1 | MTR_4g120070 | 53.604 | 222 | 61 | 4 | 266 | 459 | 7 | 214 | 1.95e-61 | 223 |
| MS.gene09930.t1 | MTR_4g120060 | 52.128 | 94 | 45 | 0 | 157 | 250 | 35 | 128 | 2.44e-27 | 107 |
| MS.gene09930.t1 | MTR_3g090170 | 23.518 | 523 | 335 | 19 | 43 | 542 | 19 | 499 | 6.64e-22 | 100 |
| MS.gene09930.t1 | MTR_3g090170 | 24.312 | 436 | 272 | 15 | 43 | 460 | 19 | 414 | 3.35e-20 | 94.4 |
| MS.gene09930.t1 | MTR_4g094405 | 21.705 | 387 | 267 | 10 | 41 | 410 | 34 | 401 | 4.41e-17 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09930.t1 | AT1G12360 | 73.973 | 657 | 159 | 5 | 14 | 660 | 12 | 666 | 0.0 | 1020 |
| MS.gene09930.t1 | AT4G12120 | 64.165 | 653 | 220 | 6 | 17 | 660 | 15 | 662 | 0.0 | 882 |
| MS.gene09930.t1 | AT1G02010 | 65.038 | 655 | 201 | 8 | 16 | 653 | 17 | 660 | 0.0 | 865 |
| MS.gene09930.t1 | AT1G02010 | 63.359 | 655 | 199 | 9 | 16 | 653 | 17 | 647 | 0.0 | 855 |
| MS.gene09930.t1 | AT1G02010 | 62.190 | 685 | 201 | 9 | 16 | 653 | 17 | 690 | 0.0 | 848 |
| MS.gene09930.t1 | AT1G02010 | 64.945 | 639 | 196 | 8 | 32 | 653 | 1 | 628 | 0.0 | 841 |
| MS.gene09930.t1 | AT1G02010 | 64.516 | 589 | 181 | 8 | 16 | 587 | 17 | 594 | 0.0 | 785 |
| MS.gene09930.t1 | AT1G02010 | 64.107 | 521 | 160 | 7 | 150 | 653 | 1 | 511 | 0.0 | 669 |
| MS.gene09930.t1 | AT1G77140 | 23.954 | 526 | 330 | 18 | 43 | 542 | 19 | 500 | 2.35e-22 | 102 |
| MS.gene09930.t1 | AT2G17980 | 20.281 | 641 | 439 | 21 | 29 | 648 | 19 | 608 | 1.29e-15 | 80.9 |
Find 137 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTAATTTGCTTGAAATTT+TGG | 0.120193 | 5.1:+5193992 | None:intergenic |
| CATAACCTGTACCTCTATTA+TGG | 0.176535 | 5.1:+5187467 | None:intergenic |
| AGAGCATTAGAGGATCTATT+TGG | 0.212778 | 5.1:-5190928 | MS.gene09930:CDS |
| GGAGTCAGGACTGCGGGAAC+TGG | 0.293146 | 5.1:-5188166 | MS.gene09930:CDS |
| CAAAGCTTGCTGCTGGAGTC+TGG | 0.293765 | 5.1:-5190635 | MS.gene09930:CDS |
| ACATACCTTCCAAGTTGATT+TGG | 0.296521 | 5.1:+5193773 | None:intergenic |
| TGAGAGAAAAGAAGTTCTTT+TGG | 0.301336 | 5.1:-5190231 | MS.gene09930:CDS |
| TGATACCATGCAGATGAATT+TGG | 0.305087 | 5.1:-5191744 | MS.gene09930:intron |
| AAAACTAATTCTCTGGAAAT+AGG | 0.306579 | 5.1:+5191918 | None:intergenic |
| GTCTTCTTGATCCAGCTTGC+AGG | 0.306762 | 5.1:-5188210 | MS.gene09930:intron |
| CTGAATAGGGAAATTATTCT+AGG | 0.309246 | 5.1:-5185661 | MS.gene09930:CDS |
| GTGTCATGATTTGCTGAATA+TGG | 0.312135 | 5.1:-5190391 | MS.gene09930:CDS |
| GTCTCAGTCTGAGGAAAATT+AGG | 0.327470 | 5.1:+5190582 | None:intergenic |
| CGTCACATACTTCCTGTATA+AGG | 0.331884 | 5.1:+5192043 | None:intergenic |
| ACCATATACCTGGCAATCTA+TGG | 0.332263 | 5.1:+5191712 | None:intergenic |
| CGACTATTGTACATCATATC+TGG | 0.332409 | 5.1:+5185456 | None:intergenic |
| CACGAGAAATCAACTGTCTA+AGG | 0.336896 | 5.1:-5187169 | MS.gene09930:CDS |
| AAACGTTTGACTGGTGCTTT+CGG | 0.359481 | 5.1:-5187600 | MS.gene09930:CDS |
| ACTCCAGCAGCAAGCTTTGT+AGG | 0.367263 | 5.1:+5190639 | None:intergenic |
| AGCTTACTAGAAGGCTGAAT+AGG | 0.377664 | 5.1:-5185675 | MS.gene09930:CDS |
| AAATAATGAGAGAGCATTAG+AGG | 0.380377 | 5.1:-5190938 | MS.gene09930:CDS |
| ATAACCTGTACCTCTATTAT+GGG | 0.393071 | 5.1:+5187468 | None:intergenic |
| TATTTCCAGAGAATTAGTTT+TGG | 0.393323 | 5.1:-5191916 | MS.gene09930:CDS |
| AATGTCCAAAACTAATTCTC+TGG | 0.394956 | 5.1:+5191911 | None:intergenic |
| CTGAGGGTGTCGTCTCGATT+AGG | 0.402968 | 5.1:-5191879 | MS.gene09930:CDS |
| AGGACTGCGGGAACTGGGCC+AGG | 0.408525 | 5.1:-5188160 | MS.gene09930:CDS |
| AACAGTATCATTAGGGAGTC+AGG | 0.409285 | 5.1:-5188180 | MS.gene09930:CDS |
| GCTTACTAGAAGGCTGAATA+GGG | 0.411575 | 5.1:-5185674 | MS.gene09930:CDS |
| TTCTAGTGATTTCAAGAAGA+TGG | 0.412872 | 5.1:-5185852 | MS.gene09930:CDS |
| GAGCATTAGAGGATCTATTT+GGG | 0.412978 | 5.1:-5190927 | MS.gene09930:CDS |
| TATGTCCACTCATGTATTAC+AGG | 0.422700 | 5.1:+5190423 | None:intergenic |
| TCTGATTCCTCCTCCTCTTA+CGG | 0.423162 | 5.1:-5194027 | MS.gene09930:CDS |
| CTTGTCGGCACGCAGTGATT+CGG | 0.429467 | 5.1:-5185888 | MS.gene09930:intron |
| TGTGTTTGCGTCTAGGGACT+TGG | 0.431530 | 5.1:+5190686 | None:intergenic |
| CGACTATTTGTATTCATTGT+CGG | 0.433005 | 5.1:-5185824 | MS.gene09930:CDS |
| TGAGAAATTTGACGGAGAAA+AGG | 0.436497 | 5.1:-5187845 | MS.gene09930:CDS |
| GTGAATAACTTGAGAATGCT+TGG | 0.439454 | 5.1:-5187642 | MS.gene09930:CDS |
| TTGCCTGTAGGTACTAATAA+TGG | 0.444030 | 5.1:-5192993 | MS.gene09930:intron |
| AGTCATTGTGTTTGCGTCTA+GGG | 0.444874 | 5.1:+5190680 | None:intergenic |
| TAGTCATTGTGTTTGCGTCT+AGG | 0.448346 | 5.1:+5190679 | None:intergenic |
| TGGAGGATCATGATCCTGTA+TGG | 0.450396 | 5.1:-5190211 | MS.gene09930:CDS |
| TCAGATGTGTTACTTCTCTC+TGG | 0.455505 | 5.1:+5192628 | None:intergenic |
| GAGAAATTTGACGGAGAAAA+GGG | 0.455838 | 5.1:-5187844 | MS.gene09930:CDS |
| CACAAATTCAGCATGGTTCA+AGG | 0.455901 | 5.1:-5190034 | MS.gene09930:intron |
| ATCAAGACGTACACCAAGTT+GGG | 0.456649 | 5.1:-5187058 | MS.gene09930:CDS |
| AATTATTCAAACCTCTGATC+GGG | 0.457842 | 5.1:+5185793 | None:intergenic |
| GGTAGACCTCCGGCCTTGCC+AGG | 0.458860 | 5.1:+5190254 | None:intergenic |
| CTGGAAGGGCTCCCTTATAC+AGG | 0.460763 | 5.1:-5192055 | MS.gene09930:CDS |
| GTTCCTACAAAGCTTGCTGC+TGG | 0.461493 | 5.1:-5190642 | MS.gene09930:CDS |
| GTAATTGGCGCCACCGTAAG+AGG | 0.465993 | 5.1:+5194014 | None:intergenic |
| TGAATAACTTGAGAATGCTT+GGG | 0.470800 | 5.1:-5187641 | MS.gene09930:CDS |
| TGATGTAAAGTGCCAGCAAA+AGG | 0.472976 | 5.1:+5187099 | None:intergenic |
| AAACCGCGAGGCTCTGATGA+TGG | 0.474037 | 5.1:-5187033 | MS.gene09930:CDS |
| TATTGACAGAACTATTGATC+AGG | 0.475763 | 5.1:-5190544 | MS.gene09930:intron |
| GAGTCAGGACTGCGGGAACT+GGG | 0.476609 | 5.1:-5188165 | MS.gene09930:CDS |
| CAGGGGATTCCAAATCAACT+TGG | 0.480880 | 5.1:-5193782 | MS.gene09930:CDS |
| ATGTGTTACTTCTCTCTGGT+TGG | 0.485539 | 5.1:+5192632 | None:intergenic |
| AAATATATAGCATCCATTGT+TGG | 0.485606 | 5.1:+5192662 | None:intergenic |
| GTCACATACTTCCTGTATAA+GGG | 0.487146 | 5.1:+5192044 | None:intergenic |
| TGGCGAAGCTCGAGCCATAC+AGG | 0.490327 | 5.1:+5190197 | None:intergenic |
| CGTCTTGATCTCATTGAATG+AGG | 0.494301 | 5.1:+5187072 | None:intergenic |
| GTTTATCCTGAGAAATTTGA+CGG | 0.499699 | 5.1:-5187853 | MS.gene09930:CDS |
| CACGCAGTGATTCGGTGCTT+AGG | 0.499930 | 5.1:-5185880 | MS.gene09930:intron |
| GTCAATAATGAGCAACTCGC+AGG | 0.502476 | 5.1:+5190560 | None:intergenic |
| CTTGCCACAAGCTTACTAGA+AGG | 0.509619 | 5.1:-5185684 | MS.gene09930:CDS |
| AAAGCTTGCTGCTGGAGTCT+GGG | 0.510328 | 5.1:-5190634 | MS.gene09930:CDS |
| CGACAAAACTAACCTCTACA+TGG | 0.514875 | 5.1:+5189093 | None:intergenic |
| CTCTGGAAATAGGTGAGCTA+AGG | 0.517467 | 5.1:+5191928 | None:intergenic |
| GCTCTGATGATGGGTATTCA+AGG | 0.518562 | 5.1:-5187023 | MS.gene09930:intron |
| TTTATCAGACATGGCTGGAA+GGG | 0.518629 | 5.1:-5192069 | MS.gene09930:CDS |
| AAATTATTCAAACCTCTGAT+CGG | 0.523929 | 5.1:+5185792 | None:intergenic |
| CTGCAAGGATAGAACGTCCT+GGG | 0.524780 | 5.1:-5187524 | MS.gene09930:CDS |
| AAACAAGATCTTGCTCCACC+TGG | 0.525352 | 5.1:+5188142 | None:intergenic |
| AACAAGGGACTTACAGAAGA+TGG | 0.525806 | 5.1:-5189162 | MS.gene09930:CDS |
| TCTAGTGATTTCAAGAAGAT+GGG | 0.526090 | 5.1:-5185851 | MS.gene09930:CDS |
| GGCGCCACCGTAAGAGGAGG+AGG | 0.531634 | 5.1:+5194020 | None:intergenic |
| CATTAGGGAGTCAGGACTGC+GGG | 0.533800 | 5.1:-5188172 | MS.gene09930:CDS |
| GCGCTTGTTAATGATTCTTG+CGG | 0.538621 | 5.1:-5187878 | MS.gene09930:CDS |
| TTTAAGGTTCCTGGCAAGGC+CGG | 0.541852 | 5.1:-5190263 | MS.gene09930:intron |
| CGGTGGCGCAACCCGATCAG+AGG | 0.552061 | 5.1:-5185804 | MS.gene09930:intron |
| AACCGCGAGGCTCTGATGAT+GGG | 0.553335 | 5.1:-5187032 | MS.gene09930:CDS |
| AAGGTTCCTGGCAAGGCCGG+AGG | 0.557439 | 5.1:-5190260 | MS.gene09930:CDS |
| AATGAAGAGAATAATCGTAA+AGG | 0.560472 | 5.1:-5190904 | MS.gene09930:CDS |
| GCTGCAAGGATAGAACGTCC+TGG | 0.561595 | 5.1:-5187525 | MS.gene09930:CDS |
| AAGGCAACCGTTACCAACAA+TGG | 0.561902 | 5.1:-5192675 | MS.gene09930:CDS |
| TCAATTTGTTCGCTGTATTG+TGG | 0.564959 | 5.1:+5189128 | None:intergenic |
| GATCAAGACGTACACCAAGT+TGG | 0.565011 | 5.1:-5187059 | MS.gene09930:CDS |
| ATAGCATCCATTGTTGGTAA+CGG | 0.565143 | 5.1:+5192668 | None:intergenic |
| AACTCGCAGGTCTCAGTCTG+AGG | 0.566951 | 5.1:+5190573 | None:intergenic |
| CTTGGCAGCACGAAAGCGGA+TGG | 0.567144 | 5.1:+5190704 | None:intergenic |
| TGGACATTAGAAAAGGTCTG+AGG | 0.569327 | 5.1:-5191896 | MS.gene09930:CDS |
| GGACATTAGAAAAGGTCTGA+GGG | 0.574848 | 5.1:-5191895 | MS.gene09930:CDS |
| AATACCGTGATGAATTGTGC+AGG | 0.575005 | 5.1:+5185619 | None:intergenic |
| GATTCCTCCTCCTCTTACGG+TGG | 0.583008 | 5.1:-5194024 | MS.gene09930:CDS |
| AAAGGGTCAGAATTTGATGA+AGG | 0.585880 | 5.1:-5187827 | MS.gene09930:intron |
| AATGTCTAACTCATGCAAGA+TGG | 0.586916 | 5.1:-5192951 | MS.gene09930:CDS |
| GCAGCACGAAAGCGGATGGA+AGG | 0.590832 | 5.1:+5190708 | None:intergenic |
| ACTGCGGGAACTGGGCCAGG+TGG | 0.591719 | 5.1:-5188157 | MS.gene09930:CDS |
| AGTCTGAGGAAAATTAGGTA+TGG | 0.591962 | 5.1:+5190587 | None:intergenic |
| GATTATTACACGAAATGCTA+AGG | 0.597429 | 5.1:-5193815 | MS.gene09930:CDS |
| TGCCAGCAAAAGGTGAGCTG+TGG | 0.599301 | 5.1:+5187109 | None:intergenic |
| TCAGCCTTCTAGTAAGCTTG+TGG | 0.601262 | 5.1:+5185680 | None:intergenic |
| GGATTCCAAATCAACTTGGA+AGG | 0.607966 | 5.1:-5193778 | MS.gene09930:intron |
| CTATTTGTATTCATTGTCGG+TGG | 0.608557 | 5.1:-5185821 | MS.gene09930:CDS |
| TGTTGCATGTTTGAATGCAA+TGG | 0.613656 | 5.1:-5190881 | MS.gene09930:CDS |
| GAGGAGCATCATGTCTATGT+CGG | 0.615188 | 5.1:-5194052 | None:intergenic |
| CAAACTCTCCCTCCATGTAG+AGG | 0.618973 | 5.1:-5189105 | MS.gene09930:intron |
| GGGACTTGGCAGCACGAAAG+CGG | 0.620933 | 5.1:+5190700 | None:intergenic |
| CTTACATGAAACACCTTCGT+CGG | 0.627545 | 5.1:+5192919 | None:intergenic |
| CAATGAATACAAATAGTCGT+TGG | 0.627844 | 5.1:+5185828 | None:intergenic |
| GAGCTGTGGAAAGTTGCACT+TGG | 0.632632 | 5.1:+5187123 | None:intergenic |
| AAAACTAACCTCTACATGGA+GGG | 0.632717 | 5.1:+5189097 | None:intergenic |
| GAGAAATCAACTGTCTAAGG+AGG | 0.645035 | 5.1:-5187166 | MS.gene09930:CDS |
| GGTAGCACGGTTAACAGATG+AGG | 0.645727 | 5.1:-5187676 | MS.gene09930:CDS |
| TCATGATTTGCTGAATATGG+AGG | 0.647982 | 5.1:-5190388 | MS.gene09930:CDS |
| CTACATCAGCAATATGAGCA+TGG | 0.648526 | 5.1:+5190177 | None:intergenic |
| GCACTTGGATCATTCAAACA+TGG | 0.648843 | 5.1:+5187138 | None:intergenic |
| TTGCTCCTGTAATACATGAG+TGG | 0.652791 | 5.1:-5190428 | MS.gene09930:CDS |
| GAATAACTTGAGAATGCTTG+GGG | 0.654755 | 5.1:-5187640 | MS.gene09930:CDS |
| ATTGGCGCCACCGTAAGAGG+AGG | 0.656163 | 5.1:+5194017 | None:intergenic |
| TCGATTAGGTGCATTAAGAG+AGG | 0.657496 | 5.1:-5191865 | MS.gene09930:intron |
| CATGATTTGCTGAATATGGA+GGG | 0.667358 | 5.1:-5190387 | MS.gene09930:CDS |
| GCTTTGTAGGAACAAGATCA+CGG | 0.669039 | 5.1:+5190652 | None:intergenic |
| ATTCAGCAAATCATGACACA+TGG | 0.674046 | 5.1:+5190395 | None:intergenic |
| ATGGCTGATATCACCGACGA+AGG | 0.680593 | 5.1:-5192932 | MS.gene09930:CDS |
| GACAATGTCAGGCTAGTGAA+CGG | 0.683507 | 5.1:-5190100 | MS.gene09930:intron |
| AAAGCTGCACAAATTCAGCA+TGG | 0.683869 | 5.1:-5190041 | MS.gene09930:CDS |
| TGCAAGGATAGAACGTCCTG+GGG | 0.686134 | 5.1:-5187523 | MS.gene09930:CDS |
| TCATTAGGGAGTCAGGACTG+CGG | 0.691345 | 5.1:-5188173 | MS.gene09930:CDS |
| TGATCCTGCACAATTCATCA+CGG | 0.693413 | 5.1:-5185623 | MS.gene09930:intron |
| CAAAACTAACCTCTACATGG+AGG | 0.693964 | 5.1:+5189096 | None:intergenic |
| GTAGCAGTGAAATGTCAACA+AGG | 0.703273 | 5.1:-5189178 | MS.gene09930:CDS |
| TTGAAGACATACACAAACGA+AGG | 0.709550 | 5.1:-5192694 | MS.gene09930:CDS |
| TAGCAGTGAAATGTCAACAA+GGG | 0.710043 | 5.1:-5189177 | MS.gene09930:CDS |
| TACCCATCATCAGAGCCTCG+CGG | 0.738058 | 5.1:+5187030 | None:intergenic |
| CCAAGTTGGGCAAAACCGCG+AGG | 0.739809 | 5.1:-5187045 | MS.gene09930:CDS |
| AATAACTTGAGAATGCTTGG+GGG | 0.791847 | 5.1:-5187639 | MS.gene09930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 5185469 | 5194064 | 5185469 | ID=MS.gene09930 |
| chr5.1 | mRNA | 5185469 | 5194064 | 5185469 | ID=MS.gene09930.t1;Parent=MS.gene09930 |
| chr5.1 | exon | 5193986 | 5194064 | 5193986 | ID=MS.gene09930.t1.exon1;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5193986 | 5194064 | 5193986 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5193779 | 5193837 | 5193779 | ID=MS.gene09930.t1.exon2;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5193779 | 5193837 | 5193779 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5192924 | 5193005 | 5192924 | ID=MS.gene09930.t1.exon3;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5192924 | 5193005 | 5192924 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5192641 | 5192719 | 5192641 | ID=MS.gene09930.t1.exon4;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5192641 | 5192719 | 5192641 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5192053 | 5192103 | 5192053 | ID=MS.gene09930.t1.exon5;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5192053 | 5192103 | 5192053 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5191866 | 5191962 | 5191866 | ID=MS.gene09930.t1.exon6;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5191866 | 5191962 | 5191866 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5191721 | 5191753 | 5191721 | ID=MS.gene09930.t1.exon7;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5191721 | 5191753 | 5191721 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5190846 | 5190971 | 5190846 | ID=MS.gene09930.t1.exon8;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5190846 | 5190971 | 5190846 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5190545 | 5190736 | 5190545 | ID=MS.gene09930.t1.exon9;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5190545 | 5190736 | 5190545 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5190368 | 5190451 | 5190368 | ID=MS.gene09930.t1.exon10;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5190368 | 5190451 | 5190368 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5190181 | 5190279 | 5190181 | ID=MS.gene09930.t1.exon11;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5190181 | 5190279 | 5190181 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5190035 | 5190111 | 5190035 | ID=MS.gene09930.t1.exon12;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5190035 | 5190111 | 5190035 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5189106 | 5189202 | 5189106 | ID=MS.gene09930.t1.exon13;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5189106 | 5189202 | 5189106 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5188092 | 5188217 | 5188092 | ID=MS.gene09930.t1.exon14;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5188092 | 5188217 | 5188092 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5187828 | 5187923 | 5187828 | ID=MS.gene09930.t1.exon15;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5187828 | 5187923 | 5187828 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5187594 | 5187697 | 5187594 | ID=MS.gene09930.t1.exon16;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5187594 | 5187697 | 5187594 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5187479 | 5187560 | 5187479 | ID=MS.gene09930.t1.exon17;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5187479 | 5187560 | 5187479 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5187024 | 5187208 | 5187024 | ID=MS.gene09930.t1.exon18;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5187024 | 5187208 | 5187024 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5185805 | 5185895 | 5185805 | ID=MS.gene09930.t1.exon19;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5185805 | 5185895 | 5185805 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5185624 | 5185713 | 5185624 | ID=MS.gene09930.t1.exon20;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5185624 | 5185713 | 5185624 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| chr5.1 | exon | 5185469 | 5185522 | 5185469 | ID=MS.gene09930.t1.exon21;Parent=MS.gene09930.t1 |
| chr5.1 | CDS | 5185469 | 5185522 | 5185469 | ID=cds.MS.gene09930.t1;Parent=MS.gene09930.t1 |
| Gene Sequence |
| Protein sequence |
