AlfalfaGEDB | MS.gene41080

M. sativa cultivar XinJiangDaYe / MS.gene41080

KEGG: K03386
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0051920 GO:0055114 GO:0065007 GO:0065008
PFAM: PF00578.24 PF10417.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41080.t1	XP_003592451.2	98.1	267	5	0	1	267	1	267	1.20E-134	489.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41080.t1	Q96291	82.6	236	38	2	35	267	31	266	1.6e-106	387.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41080.t1	G7IE32	98.1	267	5	0	1	267	1	267	8.8e-135	489.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene41080	0.836843	7.38E-57	-1.69E-46
MS.gene049171	MS.gene41080	0.906678	1.15E-80	-1.69E-46
MS.gene049173	MS.gene41080	0.890558	8.84E-74	-1.69E-46
MS.gene049217	MS.gene41080	0.920992	6.33E-88	-1.69E-46
MS.gene049222	MS.gene41080	0.910551	1.65E-82	-1.69E-46
MS.gene049232	MS.gene41080	0.853662	2.06E-61	-1.69E-46
MS.gene049285	MS.gene41080	0.940869	1.11E-100	-1.69E-46
MS.gene049320	MS.gene41080	0.928288	3.57E-92	-1.69E-46
MS.gene049369	MS.gene41080	0.803864	2.84E-49	-1.69E-46
MS.gene04939	MS.gene41080	0.839796	1.28E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene002700	MS.gene41080	PPI
MS.gene005416	MS.gene41080	PPI
MS.gene20783	MS.gene41080	PPI
MS.gene41080	MS.gene20919	PPI
MS.gene41080	MS.gene07262	PPI
MS.gene41080	MS.gene20834	PPI
MS.gene41080	MS.gene05816	PPI
MS.gene41080	MS.gene004381	PPI
MS.gene41080	MS.gene07373	PPI
MS.gene41080	MS.gene21128	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41080.t1	MTR_1g105090	98.127	267	5	0	1	267	1	267	0.0	535
MS.gene41080.t1	MTR_7g105830	86.056	251	25	3	23	267	19	265	3.75e-149	417
MS.gene41080.t1	MTR_4g094720	31.111	180	114	3	76	250	6	180	1.90e-22	92.4
MS.gene41080.t1	MTR_4g124790	32.867	143	87	3	90	231	87	221	1.56e-14	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41080.t1	AT5G06290	88.208	212	24	1	57	267	62	273	1.12e-139	394
MS.gene41080.t1	AT3G11630	90.686	204	18	1	65	267	63	266	6.26e-139	392
MS.gene41080.t1	AT5G06290	85.876	177	24	1	57	232	62	238	9.72e-110	317
MS.gene41080.t1	AT1G48130	30.682	176	117	2	76	250	6	177	7.71e-24	96.3
MS.gene41080.t1	AT3G26060	34.194	155	90	4	77	230	10	153	1.88e-16	75.1
MS.gene41080.t1	AT3G26060	33.758	157	88	5	77	230	72	215	3.95e-16	75.5
MS.gene41080.t1	AT3G26060	33.758	157	88	5	77	230	73	216	4.06e-16	75.5

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Find 74 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGGTGAAGTCCAAT+GGG	0.558564	1.3:+42555785	None:intergenic
AAATCCATATCAAAATCTTA+CGG	0.524416	1.3:-42554888	MS.gene41080:CDS
AAGTAATCTTTGCTAAGTTT+TGG	0.270982	1.3:+42554138	None:intergenic
AATGGTTTAGGAAGAGAATT+AGG	0.120754	1.3:+42557511	None:intergenic
ACAGCCTCTGCTTCAAAATC+AGG	0.381358	1.3:+42556022	None:intergenic
ACCAATTCCCAAGTTGTTGA+TGG	0.378833	1.3:+42554414	None:intergenic
ACCATCAACAACTTGGGAAT+TGG	0.356828	1.3:-42554415	MS.gene41080:CDS
ACCTGACTAACCAACCTGTT+GGG	0.441801	1.3:+42555761	None:intergenic
AGCTTACAGAGGATTTAACA+AGG	0.680115	1.3:+42557425	None:intergenic
AGGATTGTTCATTATTGACA+AGG	0.639152	1.3:-42554458	MS.gene41080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTATCTTGGAGATATTA+TGG	+	chr1.3:42555387-42555406	None:intergenic	30.0%
AATCAACTGCAAAGGATTAT+AGG	-	chr1.3:42556292-42556311	MS.gene41080:intron	30.0%
AATGGTTTAGGAAGAGAATT+AGG	+	chr1.3:42554236-42554255	None:intergenic	30.0%
ACATTGAAATATGAGCGTAA+AGG	+	chr1.3:42557153-42557172	None:intergenic	30.0%
AGGATTGTTCATTATTGACA+AGG	-	chr1.3:42557286-42557305	MS.gene41080:intron	30.0%
ATCAACTGCAAAGGATTATA+GGG	-	chr1.3:42556293-42556312	MS.gene41080:intron	30.0%
ATGGTTTAGGAAGAGAATTA+GGG	+	chr1.3:42554235-42554254	None:intergenic	30.0%
ATGTGGTATAACCTATGTAA+CGG	-	chr1.3:42556693-42556712	MS.gene41080:intron	30.0%
ATTTAACAAGGAAGCTACTA+CGG	+	chr1.3:42554310-42554329	None:intergenic	30.0%
CCATTTAAGGAATCCTTAAT+AGG	-	chr1.3:42555148-42555167	MS.gene41080:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	42554125	42557641	42554125	ID=MS.gene41080
chr1.3	mRNA	42554125	42557641	42554125	ID=MS.gene41080.t1;Parent=MS.gene41080
chr1.3	exon	42557432	42557641	42557432	ID=MS.gene41080.t1.exon1;Parent=MS.gene41080.t1
chr1.3	CDS	42557432	42557641	42557432	ID=cds.MS.gene41080.t1;Parent=MS.gene41080.t1
chr1.3	exon	42556000	42556074	42556000	ID=MS.gene41080.t1.exon2;Parent=MS.gene41080.t1
chr1.3	CDS	42556000	42556074	42556000	ID=cds.MS.gene41080.t1;Parent=MS.gene41080.t1
chr1.3	exon	42555776	42555857	42555776	ID=MS.gene41080.t1.exon3;Parent=MS.gene41080.t1
chr1.3	CDS	42555776	42555857	42555776	ID=cds.MS.gene41080.t1;Parent=MS.gene41080.t1
chr1.3	exon	42555613	42555692	42555613	ID=MS.gene41080.t1.exon4;Parent=MS.gene41080.t1
chr1.3	CDS	42555613	42555692	42555613	ID=cds.MS.gene41080.t1;Parent=MS.gene41080.t1
chr1.3	exon	42554869	42554994	42554869	ID=MS.gene41080.t1.exon5;Parent=MS.gene41080.t1
chr1.3	CDS	42554869	42554994	42554869	ID=cds.MS.gene41080.t1;Parent=MS.gene41080.t1
chr1.3	exon	42554381	42554494	42554381	ID=MS.gene41080.t1.exon6;Parent=MS.gene41080.t1
chr1.3	CDS	42554381	42554494	42554381	ID=cds.MS.gene41080.t1;Parent=MS.gene41080.t1
chr1.3	exon	42554125	42554241	42554125	ID=MS.gene41080.t1.exon7;Parent=MS.gene41080.t1
chr1.3	CDS	42554125	42554241	42554125	ID=cds.MS.gene41080.t1;Parent=MS.gene41080.t1

Gene Sequence

>MS.gene41080

ATGGCATGCTCAGCTACTACTACCTCTGCTTCTTCTCTCTTCTCATCTCTAAACCCTAAATCCTCACTTTTCTCTCCCAAATTACCCTCTTCTTCTACTCTCTCTATCCCTAATTCTCTTCCTAAACCATTCTCTCTCCCTTCACTTTCCTTCACTCGCCCCAATCTTCAACATTCTTCTCGCCGTAGTAGCTTCCTTGTTAAATCCTCTGTAAGCTTTTCCCACAATTTTCATTTATCCAATTTTGATTTTGAAATTTTCTGCATTGTTGAAAATGTTACTGTTGTTTATTGCTGTGTGTTTTTCTGTATCTTAATTATGTTAATTGAACATTAATTGATTATTGGGTTTGTTGATAATTAGATATGCTAGTTGGTTATGCAATTTGTTTTAATTTGAGTATTTCAGCAACACTGCTTGAAATTTCTACAACATGTATTTTTTTTTTACAATTACAATATTTATAATTCATGCTTGTTTTTGGGATTTTTGTATTTAATTGCTAAATTTTGCATATGCTTGAATTGACTTATTTGAGCTTATATACTTGCATTAGCATTTGTCAGTCTGTTTGGGGGAGCTTATGAAAACAAAGAGCATCTCCAATGGGGGGTCCTTACTTAACAAGGACCACTCCCCGTTAAGGACCCTCCATTGGAGGAAGAAAAATTGAGTCCCCGTTAAGGAACGGGCAACTATATAAGGACCCTCTCTCTCCTGAGTAACTAACGGGCCCCACGTTTAAAAATGTAATAAAATGTGTACTACTTGGTCCCACTTGTATAAATAAGTAATAAAATGTGTACTACTTGGTCCCACTTGCATAAAGAAGTAATAAAATGTGTACTACTTGGTCCCACTTGTAAAAATGAGTAATAGATAAATTATTTTTGTTTAATATGGAAAGATAGTGGGACATATTTAAGTACTTTTCATTGGAGTCCATATTTAAGTACTTTTTATTGAGTCCTTAATATGTACTTTTATTAAAAAATTATAAATAAGTGATGTGTCACGTGGGGTCCATTTAAGGAATCCTTAATAGGGAACTACCATTGTGGATGCTCTACAATTTCTACAATGTTTCTAGTTCATGTGCATTTTCGGGATTTTTATCTTTAATCACTAAATATTAGGGTCTTCATTTGACTTATTTGAGCTAATATGTTAGCATATAAGCATTTGTGAGTGTGTTTGAGAGAGGTTATGAAAACAACTTACAACATTTTTATAAGCAGTTTTCATCTTATTTCCAAATTCCATAATATCTCCAAGATAGCTTATGAAAGCAAGTTATAGCTTCTATGAAAACAATTTGACTTTATTTTACCGTCTGTCTAGAAAACAGTTTGACTATACATAAGCAAGTTGTTTATCCAAATTATGTCCTTGCTCCGAGCTAGAATGCTTTAATGCATTTGGGTGTTTTTAAATTTTAAGCATAAAGTATTGAAAATTTGAAATTTCTTCAATATTTCCAGTTCATGTGCGTTTTTGAGAATTTATTCTTTAAATGACTAAATCTTAGTCTAAGTATAGTCTTTAAATTTCTGGTTTGACCTCACAGAGTGAGCTTCCATTGGTTGGAAATGCAGCACCTGATTTTGAAGCAGAGGCTGTTTTTGATCAGGAGTTTATCAAGGTACGCAGCCACCAACCTACGCGAATACGAATACTGATTCTTAATGTCTTGACAAGTTTTTTCATTTTTATTATGTGGTTATTTTTGAGTAATCGCTTTTGGAAATTTCCATGTTTGATTGACTAAATCATTGTCATTCCAGGTCAAACTCTCTGACTACATTGGGAAGAAGTATGTCATCCTCTTTTTCTACCCATTGGACTTCACCTTTGTTTGCCCAACAGGTTGGTTAGTCAGGTCGATCTAGTTGTACTTTTAAATTTCTTTCTTTAACTTCCTAACGATAATGTGCGCTACTTGACTGCAGAAATCACCGCTTTCAGTGACCGACATGCAGAGTTTGAGGCAATAAATACCGAGATTTTGGGTGTTTCAGTGGACAGTGTGGTACGTTGGTTTATACTGTTTCTTTAATCATTACTGTTGACCTAGTTAACGTTGTGTGTCAATGTGTGTCTGCATAATTTCATGTTATACTTCATTATGACATACCTGCTGTCTGTCTATTAGTTAGCAAGAAAAATGAATCAACTGCAAAGGATTATAGGGCATTTTAAAGATTCCATATCGTTTAAGGATTTATTTTGTAGAGATAAACTAGTTCTTACTATAAGGTTAACAGTTCATACATGTTGTATTTTTACGTCTCTGAATAATTGCTGAATTGAACAAGAATATTGTCAGAGGGAATTTCTTCATAAATAAAGGAAAATGAAAAAATGTGAATGAACATTTGTTCAAACATAAATAATTCAAATATATCTTGTTAATCTACATATGTAATGAGATTCATAGCATTTGTAAACCAATGCCCACAGTCTTTACATAGACTACATGGATACACTCACATGCTGAGTGCTGACACATACCCTTGAAAAACAAGGCTTGTTGTCTTGGTATCTGATAGGTTCTTTATGCTCTTATGTATGTGGTATAACCTATGTAACGGAAATTCCAGCATCTGTTTCTTTTTTTATTAGCGATGCCATTGTTTCTATCGTGCAGTTCTCGCATCTTGCATGGGTTCAAACAGATAGAAAGTCAGGTGGCCTTGGTGACTTGAATTATCCTCTGGTTTCCGATGTCACCAAATCCATATCAAAATCTTACGGTGTTCTCATTCCTGATCAGGTATGTCCTGACATATGAAAATACTGTAACTTATGTATGGCTGGATTATAATAAAGCAACAGCCGTCTAGATTTTTTGTTGTATCATCTCTCCCTAAACGAACTTAGCAAGGGTATGCCATATCTACGGGGAATGCTCTCCCATTTGTAGAATTTCCCGAGTTATCGGACTTGCTATCTAATCAAAGCAAGTTTTTATTTGACTTGTTAAGGAATTGAACTAGGACATTGCTTTTCCTTCCCCAACACTTGTCCTTTACGCTCATATTTCAATGTTGTTTTGGAATGAAATTTATGATGCTTAATAGCTTTAACCGGTCAATAGTTGGCATCTAAACTATTGTCTTCCATTCCACTATTTTGGACTTGTTGCAGGGAATTGCATTGAGAGGATTGTTCATTATTGACAAGGAAGGGGTTATTCAGCATTCTACCATCAACAACTTGGGAATTGGTAGAAGTGTTGACGAGACAAAGAGAACACTCCAGGTGATTATACAACTAATTAATACCACATCAAGATTTAACAATATCTATTTAGAATATCACATTTTTATTTGTTCGCTTCTATATCCGATCTACCGTGTACATAACTTCATTGTTCCCTTGATGTGCATTTGTTTTGCAGGCCTTGCAGTATGTGCAGGAGAACCCAGATGAAGTTTGCCCTGCTGGATGGAAGCCTGGGGAGAAGTCCATGAAACCAGACCCAAAACTTAGCAAAGATTACTTTGCCGCGGTGTAA

Protein sequence

>MS.gene41080.t1

MACSATTTSASSLFSSLNPKSSLFSPKLPSSSTLSIPNSLPKPFSLPSLSFTRPNLQHSSRRSSFLVKSSSELPLVGNAAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHAEFEAINTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDVTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKDYFAAV