Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21357.t1 | XP_003591643.1 | 99.3 | 574 | 4 | 0 | 1 | 574 | 1 | 574 | 8.1e-309 | 1068.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21357.t1 | Q05046 | 92.2 | 575 | 44 | 1 | 1 | 574 | 1 | 575 | 3.8e-291 | 1001.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21357.t1 | Q1RSH3 | 99.3 | 574 | 4 | 0 | 1 | 574 | 1 | 574 | 5.8e-309 | 1068.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21357.t1 | MTR_1g090140 | 99.303 | 574 | 4 | 0 | 1 | 574 | 1 | 574 | 0.0 | 1146 |
| MS.gene21357.t1 | MTR_1g090130 | 94.840 | 562 | 29 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1078 |
| MS.gene21357.t1 | MTR_8g017080 | 70.833 | 576 | 166 | 2 | 1 | 574 | 1 | 576 | 0.0 | 802 |
| MS.gene21357.t1 | MTR_1g017390 | 47.664 | 535 | 274 | 4 | 34 | 564 | 47 | 579 | 1.19e-167 | 489 |
| MS.gene21357.t1 | MTR_1g017380 | 47.477 | 535 | 275 | 4 | 34 | 564 | 47 | 579 | 4.95e-167 | 488 |
| MS.gene21357.t1 | MTR_4g057970 | 45.355 | 549 | 288 | 5 | 19 | 558 | 28 | 573 | 6.36e-158 | 464 |
| MS.gene21357.t1 | MTR_4g084130 | 40.850 | 541 | 313 | 6 | 33 | 569 | 40 | 577 | 9.58e-136 | 407 |
| MS.gene21357.t1 | MTR_4g084130 | 39.700 | 466 | 275 | 5 | 108 | 569 | 2 | 465 | 1.26e-110 | 338 |
| MS.gene21357.t1 | MTR_0991s0010 | 50.758 | 132 | 63 | 1 | 34 | 163 | 47 | 178 | 2.20e-34 | 129 |
| MS.gene21357.t1 | MTR_3g090510 | 90.164 | 61 | 6 | 0 | 117 | 177 | 100 | 160 | 5.07e-27 | 113 |
| MS.gene21357.t1 | MTR_7g060560 | 82.812 | 64 | 11 | 0 | 114 | 177 | 90 | 153 | 1.63e-25 | 109 |
| MS.gene21357.t1 | MTR_1g037030 | 68.333 | 60 | 4 | 1 | 119 | 178 | 59 | 103 | 2.57e-15 | 75.9 |
| MS.gene21357.t1 | MTR_7g113470 | 24.429 | 569 | 325 | 22 | 40 | 562 | 16 | 525 | 2.48e-14 | 76.3 |
| MS.gene21357.t1 | MTR_7g067470 | 24.077 | 569 | 327 | 22 | 40 | 562 | 16 | 525 | 1.52e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21357.t1 | AT3G23990 | 90.053 | 563 | 55 | 1 | 1 | 563 | 1 | 562 | 0.0 | 1026 |
| MS.gene21357.t1 | AT2G33210 | 86.702 | 564 | 75 | 0 | 1 | 564 | 1 | 564 | 0.0 | 998 |
| MS.gene21357.t1 | AT2G33210 | 85.993 | 564 | 74 | 1 | 1 | 564 | 1 | 559 | 0.0 | 981 |
| MS.gene21357.t1 | AT3G13860 | 72.826 | 552 | 147 | 2 | 22 | 572 | 21 | 570 | 0.0 | 810 |
| MS.gene21357.t1 | AT5G56500 | 47.731 | 551 | 283 | 3 | 28 | 574 | 46 | 595 | 7.88e-172 | 500 |
| MS.gene21357.t1 | AT5G56500 | 47.731 | 551 | 283 | 3 | 28 | 574 | 46 | 595 | 7.88e-172 | 500 |
| MS.gene21357.t1 | AT3G13470 | 46.984 | 547 | 282 | 5 | 33 | 574 | 51 | 594 | 5.09e-165 | 483 |
| MS.gene21357.t1 | AT1G55490 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.51e-164 | 481 |
| MS.gene21357.t1 | AT1G55490 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.51e-164 | 481 |
| MS.gene21357.t1 | AT1G55490 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.51e-164 | 481 |
| MS.gene21357.t1 | AT1G55490 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.51e-164 | 481 |
| MS.gene21357.t1 | AT1G55490 | 46.801 | 547 | 283 | 5 | 33 | 574 | 55 | 598 | 3.51e-164 | 481 |
| MS.gene21357.t1 | AT1G26230 | 43.284 | 536 | 298 | 4 | 33 | 564 | 39 | 572 | 6.68e-156 | 460 |
| MS.gene21357.t1 | AT1G26230 | 43.907 | 517 | 286 | 3 | 50 | 564 | 6 | 520 | 5.95e-155 | 456 |
| MS.gene21357.t1 | AT2G28000 | 44.508 | 528 | 289 | 3 | 28 | 553 | 42 | 567 | 8.60e-155 | 456 |
| MS.gene21357.t1 | AT1G26230 | 44.055 | 513 | 283 | 3 | 54 | 564 | 2 | 512 | 1.60e-154 | 454 |
| MS.gene21357.t1 | AT1G26230 | 43.008 | 472 | 264 | 3 | 33 | 500 | 39 | 509 | 4.01e-137 | 410 |
| MS.gene21357.t1 | AT5G18820 | 39.259 | 540 | 322 | 4 | 34 | 569 | 35 | 572 | 1.10e-122 | 374 |
| MS.gene21357.t1 | AT1G26230 | 43.210 | 405 | 227 | 2 | 33 | 435 | 39 | 442 | 1.29e-119 | 362 |
| MS.gene21357.t1 | AT5G18820 | 38.197 | 466 | 283 | 3 | 108 | 569 | 2 | 466 | 8.18e-99 | 308 |
| MS.gene21357.t1 | AT5G18820 | 37.995 | 379 | 234 | 1 | 34 | 412 | 35 | 412 | 1.03e-81 | 263 |
| MS.gene21357.t1 | AT5G20890 | 23.199 | 569 | 332 | 21 | 40 | 562 | 16 | 525 | 6.00e-13 | 72.0 |
Find 137 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGCCTTGGTTGCATTTA+AGG | 0.066385 | 1.4:+71389173 | None:intergenic |
| GAAAGATTGGCCAAGCTTTC+TGG | 0.129629 | 1.4:-71389369 | MS.gene21357:CDS |
| AATTATCCAAAACGCTTTAA+AGG | 0.167858 | 1.4:-71388964 | MS.gene21357:intron |
| ATTAAGAACATACACATTTC+TGG | 0.203030 | 1.4:+71390758 | None:intergenic |
| GCGATCAAAGCCCCTGGTTT+TGG | 0.247960 | 1.4:-71389984 | MS.gene21357:CDS |
| TAAGCTTCGTGCTGGAATTA+AGG | 0.250806 | 1.4:-71390114 | MS.gene21357:intron |
| CAGGATCTCGCTGTTCTTAC+AGG | 0.260673 | 1.4:-71389939 | MS.gene21357:CDS |
| CACGCCAAATTTGATCTCTT+TGG | 0.262496 | 1.4:+71392224 | None:intergenic |
| ACCTATCTTCTGATCAAAAT+TGG | 0.264660 | 1.4:+71388992 | None:intergenic |
| GGAGCATCTTTATCTTCTTT+TGG | 0.274868 | 1.4:+71388309 | None:intergenic |
| GCTGCCAAAGAGATCAAATT+TGG | 0.276119 | 1.4:-71392228 | MS.gene21357:CDS |
| AACACACCTTTAAAGCGTTT+TGG | 0.279175 | 1.4:+71388958 | None:intergenic |
| GCTAATGGGGATAGAGAAAT+TGG | 0.310768 | 1.4:-71391109 | MS.gene21357:CDS |
| GGCTCGTGCTTTGATGCTTA+AGG | 0.319494 | 1.4:-71392199 | MS.gene21357:CDS |
| TGTTGTTGTTGGTAAACTTT+TGG | 0.322472 | 1.4:-71388712 | MS.gene21357:CDS |
| AGTATTAGAGTTAGCTTTGA+AGG | 0.325433 | 1.4:-71390284 | MS.gene21357:intron |
| GATGACACTGTCATTCTTGA+TGG | 0.339637 | 1.4:-71389612 | MS.gene21357:CDS |
| TTCTGGTTTGTTATGAAATA+CGG | 0.342174 | 1.4:+71390784 | None:intergenic |
| AAGAATGACAGTGTCATCTT+TGG | 0.342488 | 1.4:+71389617 | None:intergenic |
| TTGATCCATTGAAGGTGATT+AGG | 0.344579 | 1.4:-71388489 | MS.gene21357:CDS |
| TGGAGGAGTTGCAGTGCTTA+AGG | 0.349238 | 1.4:-71389349 | MS.gene21357:intron |
| TCTTACCCGGGCAATATTTA+CGG | 0.358409 | 1.4:-71391381 | MS.gene21357:CDS |
| ATACACATTTCTGGTTCTTC+TGG | 0.367623 | 1.4:+71390767 | None:intergenic |
| GAACAGGATAATCCTGATCT+TGG | 0.368234 | 1.4:-71388690 | MS.gene21357:CDS |
| ATTAGGTGAATATGTTGATA+TGG | 0.372412 | 1.4:-71388527 | MS.gene21357:intron |
| TTTGGGGAAAACAGGAAATC+TGG | 0.375733 | 1.4:-71389966 | MS.gene21357:CDS |
| ATTGATGACTTACCGAGCTT+TGG | 0.376430 | 1.4:+71392682 | None:intergenic |
| AATGTTCGGTTCTTGCAAAA+AGG | 0.380948 | 1.4:-71389774 | MS.gene21357:intron |
| GTTGGCACAATATCTGCTAA+TGG | 0.381948 | 1.4:-71391124 | MS.gene21357:CDS |
| TTGGCACAATATCTGCTAAT+GGG | 0.388899 | 1.4:-71391123 | MS.gene21357:CDS |
| TGCTCCTGCCATGCCTGGTA+TGG | 0.389510 | 1.4:-71388292 | MS.gene21357:CDS |
| GCTCGTGCTTTGATGCTTAA+GGG | 0.392668 | 1.4:-71392198 | MS.gene21357:CDS |
| TGCTAGGAGCAACGCTAATC+AGG | 0.394183 | 1.4:-71392388 | MS.gene21357:intron |
| GGCTGAAGTTGGTGAGAAAA+AGG | 0.395231 | 1.4:-71389211 | MS.gene21357:CDS |
| CTCACCAACTTCAGCCTCAC+TGG | 0.395856 | 1.4:+71389218 | None:intergenic |
| TATGTTGATATGGTTAAATC+TGG | 0.397957 | 1.4:-71388517 | MS.gene21357:CDS |
| AAAGTTGATCTTGAAATGTT+CGG | 0.399954 | 1.4:-71389788 | MS.gene21357:CDS |
| CACTTCTGAAGAAATTGCTC+AGG | 0.402357 | 1.4:-71391246 | MS.gene21357:intron |
| GCCCTCCTCTACAGCTGCCT+TGG | 0.403912 | 1.4:+71389161 | None:intergenic |
| CCTGAGGCGAGGTATAAATA+TGG | 0.408456 | 1.4:-71391318 | MS.gene21357:CDS |
| GGCTAAGAGCATTGAATTCA+AGG | 0.411181 | 1.4:-71391812 | MS.gene21357:CDS |
| CTGTAAGAACAGCGAGATCC+TGG | 0.413061 | 1.4:+71389940 | None:intergenic |
| GTAGAGGGTGCTGTTGTTGT+TGG | 0.422645 | 1.4:-71388723 | MS.gene21357:CDS |
| TTCTTTGCCAACTTTCTCCA+TGG | 0.436356 | 1.4:+71391069 | None:intergenic |
| AAGGATAAAGTCAAGAATAT+CGG | 0.438011 | 1.4:-71391793 | MS.gene21357:CDS |
| TCCTCAGCAACAATCAATAA+AGG | 0.438194 | 1.4:+71390173 | None:intergenic |
| AAGATTCATGCCAAGCTCTT+CGG | 0.445204 | 1.4:+71389814 | None:intergenic |
| GATGACTTACCGAGCTTTGG+AGG | 0.447733 | 1.4:+71392685 | None:intergenic |
| TGCAACCTGCTTTACAAGAC+TGG | 0.457958 | 1.4:+71391768 | None:intergenic |
| ATCCTTCCGTAAATATTGCC+CGG | 0.471871 | 1.4:+71391375 | None:intergenic |
| AATGAGTTGGAAGTTGTTGA+AGG | 0.477205 | 1.4:-71390835 | MS.gene21357:CDS |
| TGCAACTCCTCCAGAAAGCT+TGG | 0.478495 | 1.4:+71389359 | None:intergenic |
| GCGGTCCTAATCACCTTCAA+TGG | 0.479235 | 1.4:+71388484 | None:intergenic |
| CCGCCTTGGTTGACGCAGCC+AGG | 0.479827 | 1.4:-71388465 | MS.gene21357:intron |
| GCCCCTAAAGTGACAAAAGA+TGG | 0.479995 | 1.4:-71391844 | MS.gene21357:CDS |
| ACTGTCATTCTTGATGGATC+TGG | 0.480375 | 1.4:-71389606 | MS.gene21357:CDS |
| GCTCCTGCCATGCCTGGTAT+GGG | 0.490109 | 1.4:-71388291 | MS.gene21357:CDS |
| GCGGCATCGTAACCAAGATC+AGG | 0.490844 | 1.4:+71388678 | None:intergenic |
| TGGAATAATTGATCCATTGA+AGG | 0.491715 | 1.4:-71388497 | MS.gene21357:CDS |
| ATGGAGAAAGTTGGCAAAGA+AGG | 0.492043 | 1.4:-71391067 | MS.gene21357:CDS |
| TTCTGATCAAAATTGGCGGT+TGG | 0.494191 | 1.4:+71388999 | None:intergenic |
| CAAGACATTGCAAAATGAGT+TGG | 0.496144 | 1.4:-71390848 | MS.gene21357:CDS |
| CTTAGTTACCTTAGGACCCA+TGG | 0.497517 | 1.4:+71392143 | None:intergenic |
| AAAGATGCTCCTGCCATGCC+TGG | 0.497620 | 1.4:-71388297 | MS.gene21357:CDS |
| AAACAGGAAATCTGGTCTCC+AGG | 0.499170 | 1.4:-71389958 | MS.gene21357:CDS |
| AATTGAGGAAAGATGTGAGC+AGG | 0.500933 | 1.4:-71389571 | MS.gene21357:intron |
| TAAAGTAACCATGGGTCCTA+AGG | 0.503309 | 1.4:-71392151 | MS.gene21357:intron |
| CGGTGCCAGTCTTGTAAAGC+AGG | 0.504414 | 1.4:-71391773 | MS.gene21357:CDS |
| CATGCCTGGTATGGGTGGTA+TGG | 0.507454 | 1.4:-71388283 | MS.gene21357:CDS |
| GGATGCAAATCAGTTGCAGC+TGG | 0.520565 | 1.4:-71391356 | MS.gene21357:CDS |
| CAAGGAACACTGACCTTTGG+CGG | 0.520960 | 1.4:+71388659 | None:intergenic |
| ATTGATTGTTGCTGAGGATG+TGG | 0.521979 | 1.4:-71390168 | MS.gene21357:CDS |
| TTTGCTCAATCACCACGTTA+CGG | 0.522654 | 1.4:+71391875 | None:intergenic |
| TGATGAAGCAAAACGGTACA+TGG | 0.524897 | 1.4:+71392712 | None:intergenic |
| ACTTGATTTATGAAGATTGG+AGG | 0.528207 | 1.4:-71389243 | MS.gene21357:intron |
| GTAGAGGAGGGCATAGTACC+TGG | 0.531895 | 1.4:-71389150 | MS.gene21357:intron |
| CTTGTGCTACAGTTCTTACC+CGG | 0.535613 | 1.4:-71391394 | MS.gene21357:CDS |
| GAAGGTGATTAGGACCGCCT+TGG | 0.537650 | 1.4:-71388479 | MS.gene21357:CDS |
| ACCATCACCAGCCACATCAT+TGG | 0.538003 | 1.4:+71391738 | None:intergenic |
| ACCTTTATTGATTGTTGCTG+AGG | 0.539398 | 1.4:-71390174 | MS.gene21357:CDS |
| ATTCTAAATAAGCTTCGTGC+TGG | 0.540824 | 1.4:-71390122 | MS.gene21357:CDS |
| TGCAACCAAGGCAGCTGTAG+AGG | 0.541405 | 1.4:-71389166 | MS.gene21357:CDS |
| CAGCTTATCACCGAAGAGCT+TGG | 0.542247 | 1.4:-71389824 | MS.gene21357:CDS |
| ATTTAGAATAAGAGTTGCAA+GGG | 0.543816 | 1.4:+71390136 | None:intergenic |
| GCAAAAGCCATGGAGAAAGT+TGG | 0.544162 | 1.4:-71391076 | MS.gene21357:CDS |
| GCATCAAATGCTGGAGTAGA+GGG | 0.546345 | 1.4:-71388738 | MS.gene21357:CDS |
| TATTTAGAATAAGAGTTGCA+AGG | 0.553538 | 1.4:+71390135 | None:intergenic |
| CATACAATTGCATCAAATGC+TGG | 0.554740 | 1.4:-71388747 | MS.gene21357:CDS |
| TGCATCAAATGCTGGAGTAG+AGG | 0.557397 | 1.4:-71388739 | MS.gene21357:CDS |
| TCCTTCCGTAAATATTGCCC+GGG | 0.565365 | 1.4:+71391376 | None:intergenic |
| CCACCCATACCAGGCATGGC+AGG | 0.565885 | 1.4:+71388288 | None:intergenic |
| GTGGTGATTGAGCAAAGCTT+TGG | 0.566454 | 1.4:-71391868 | MS.gene21357:CDS |
| CATCACTTGCCTCCAAAGCT+CGG | 0.570155 | 1.4:-71392694 | MS.gene21357:intron |
| CCTGCCATGCCTGGTATGGG+TGG | 0.574287 | 1.4:-71388288 | MS.gene21357:CDS |
| TTCTCGTGGATTATAATGAG+AGG | 0.575624 | 1.4:+71390337 | None:intergenic |
| ACCAATGATGTGGCTGGTGA+TGG | 0.577314 | 1.4:-71391739 | MS.gene21357:intron |
| TGAGTTAATTGCAAAAGCCA+TGG | 0.577983 | 1.4:-71391086 | MS.gene21357:CDS |
| CCATATTTATACCTCGCCTC+AGG | 0.579496 | 1.4:+71391318 | None:intergenic |
| TATCTTCTGATCAAAATTGG+CGG | 0.579635 | 1.4:+71388995 | None:intergenic |
| TGGTGATAAGAAATCAATTG+AGG | 0.584040 | 1.4:-71389586 | MS.gene21357:CDS |
| AACCAAGGCAGCTGTAGAGG+AGG | 0.586821 | 1.4:-71389163 | MS.gene21357:CDS |
| CTTGGTTACGATGCCGCCAA+AGG | 0.591473 | 1.4:-71388672 | MS.gene21357:intron |
| GTATGTGCGATCAAAGCCCC+TGG | 0.591861 | 1.4:-71389990 | MS.gene21357:CDS |
| ACCCGGGCAATATTTACGGA+AGG | 0.599417 | 1.4:-71391377 | MS.gene21357:CDS |
| AGGCAAGTGATGAAGCAAAA+CGG | 0.600903 | 1.4:+71392705 | None:intergenic |
| TGAGGCAGTTAAAGTAACCA+TGG | 0.610661 | 1.4:-71392160 | MS.gene21357:CDS |
| TAGTCCATACCACCCATACC+AGG | 0.615608 | 1.4:+71388279 | None:intergenic |
| GGGTGTTGAAGAACTTGCTG+AGG | 0.617007 | 1.4:-71392178 | MS.gene21357:CDS |
| GGTAAGAACTGTAGCACAAG+TGG | 0.617248 | 1.4:+71391397 | None:intergenic |
| CTACCTGGCTGCGTCAACCA+AGG | 0.618790 | 1.4:+71388462 | None:intergenic |
| GGAGCCAGTGAGGCTGAAGT+TGG | 0.619289 | 1.4:-71389222 | MS.gene21357:CDS |
| ACCAAGGCAGCTGTAGAGGA+GGG | 0.620345 | 1.4:-71389162 | MS.gene21357:CDS |
| TGGCACAATATCTGCTAATG+GGG | 0.620505 | 1.4:-71391122 | MS.gene21357:CDS |
| TTTGATGCAATTGTATGCAC+AGG | 0.621753 | 1.4:+71388753 | None:intergenic |
| GAGGCAGTTAAAGTAACCAT+GGG | 0.626223 | 1.4:-71392159 | MS.gene21357:CDS |
| AATGCTACCAATGATGTGGC+TGG | 0.626483 | 1.4:-71391745 | MS.gene21357:CDS |
| AATTCATCTACAGATTAGGT+CGG | 0.630754 | 1.4:-71389436 | MS.gene21357:intron |
| TTTGTTACCACAGGAACTCG+AGG | 0.635926 | 1.4:-71390362 | MS.gene21357:intron |
| AGAGATCAAATTTGGCGTGG+AGG | 0.637900 | 1.4:-71392220 | MS.gene21357:CDS |
| TGCATAGATTGGAAGTAGAG+TGG | 0.642888 | 1.4:-71392268 | MS.gene21357:intron |
| AGATGCCTTAAATGCAACCA+AGG | 0.645500 | 1.4:-71389178 | MS.gene21357:CDS |
| AGATTGGCCAAGCTTTCTGG+AGG | 0.646303 | 1.4:-71389366 | MS.gene21357:CDS |
| TGCAGCTGGAATGAATGCAA+TGG | 0.646496 | 1.4:-71391342 | MS.gene21357:CDS |
| CATACCACCCATACCAGGCA+TGG | 0.647057 | 1.4:+71388284 | None:intergenic |
| AATACGGAGAAATGTAGCCT+CGG | 0.653427 | 1.4:+71390800 | None:intergenic |
| AGATTGGAAGTAGAGTGGCA+TGG | 0.658826 | 1.4:-71392263 | MS.gene21357:CDS |
| TTGTGCTACAGTTCTTACCC+GGG | 0.659855 | 1.4:-71391393 | MS.gene21357:CDS |
| CAAAGAGATCAAATTTGGCG+TGG | 0.667217 | 1.4:-71392223 | MS.gene21357:CDS |
| AATGCAATGGACCTGAGGCG+AGG | 0.674402 | 1.4:-71391329 | MS.gene21357:CDS |
| GAATGAATGCAATGGACCTG+AGG | 0.678991 | 1.4:-71391334 | MS.gene21357:CDS |
| TGCAAATGCTACCAATGATG+TGG | 0.685010 | 1.4:-71391749 | MS.gene21357:CDS |
| GATCTCGCTGTTCTTACAGG+AGG | 0.694554 | 1.4:-71389936 | MS.gene21357:CDS |
| GAAGATTGGAGGAGCCAGTG+AGG | 0.699698 | 1.4:-71389232 | MS.gene21357:intron |
| TAGCACTTCAGATTATGACA+AGG | 0.700368 | 1.4:-71389403 | MS.gene21357:CDS |
| CCTGGCTGCGTCAACCAAGG+CGG | 0.705423 | 1.4:+71388465 | None:intergenic |
| GAAGGAATGAAGCTTGACCG+AGG | 0.708985 | 1.4:-71390817 | MS.gene21357:CDS |
| GACAAAAGATGGAGTCACTG+TGG | 0.727240 | 1.4:-71391833 | MS.gene21357:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAAAAACAGATATAA+AGG | + | chr1.4:71388692-71388711 | None:intergenic | 10.0% |
| !! | TTAGAAATTAAATCTAAATA+CGG | - | chr1.4:71389423-71389442 | MS.gene21357:CDS | 10.0% |
| !! | ATTAAGAAAATTAGTTAAGT+AGG | + | chr1.4:71391331-71391350 | None:intergenic | 15.0% |
| !! | GTAATCATAATGTAATTAAA+GGG | + | chr1.4:71390444-71390463 | None:intergenic | 15.0% |
| !! | TAATCATAATGTAATTAAAG+GGG | + | chr1.4:71390443-71390462 | None:intergenic | 15.0% |
| !! | TGTAATCATAATGTAATTAA+AGG | + | chr1.4:71390445-71390464 | None:intergenic | 15.0% |
| !! | TTAGAATCATTCAATATAAT+TGG | + | chr1.4:71388546-71388565 | None:intergenic | 15.0% |
| !!! | TTTTTTGAAATTATTCATCT+GGG | - | chr1.4:71388391-71388410 | MS.gene21357:intron | 15.0% |
| !! | AATCAAATAAGAAAAACTAC+AGG | + | chr1.4:71390954-71390973 | None:intergenic | 20.0% |
| !! | AGGATATAAAAAATTTGCAT+TGG | - | chr1.4:71392544-71392563 | MS.gene21357:intron | 20.0% |
| !! | ATACATTTATCAGATATGTT+TGG | + | chr1.4:71391907-71391926 | None:intergenic | 20.0% |
| !! | ATGGTAAAATGAAATCTAAT+AGG | + | chr1.4:71391453-71391472 | None:intergenic | 20.0% |
| !! | CATCAACAACAATTAATAAT+GGG | + | chr1.4:71389066-71389085 | None:intergenic | 20.0% |
| !! | GGATAATTGAAACAAAAAAA+AGG | + | chr1.4:71388337-71388356 | None:intergenic | 20.0% |
| !! | TCATCAACAACAATTAATAA+TGG | + | chr1.4:71389067-71389086 | None:intergenic | 20.0% |
| !! | TTATTCAATCATATTTCAGA+GGG | - | chr1.4:71388979-71388998 | MS.gene21357:CDS | 20.0% |
| !! | TTCAAAAATATAATCAACCA+TGG | + | chr1.4:71389285-71389304 | None:intergenic | 20.0% |
| !!! | AATGTAAATTTTTGTGCTTT+TGG | - | chr1.4:71388565-71388584 | MS.gene21357:intron | 20.0% |
| !!! | ATCAAATTTTTAGAGCTAAT+AGG | - | chr1.4:71389769-71389788 | MS.gene21357:intron | 20.0% |
| !!! | ATTTTTAATTTTGCAATGCT+AGG | - | chr1.4:71389839-71389858 | MS.gene21357:intron | 20.0% |
| !!! | CGTTTTAAAATGATTGATAA+TGG | - | chr1.4:71388415-71388434 | MS.gene21357:intron | 20.0% |
| !!! | CTTTTTTGAAATTATTCATC+TGG | - | chr1.4:71388390-71388409 | MS.gene21357:intron | 20.0% |
| !!! | TTAAATTTTCACAGTTGATT+CGG | - | chr1.4:71389307-71389326 | MS.gene21357:intron | 20.0% |
| !!! | TTATATGTGTTTTTTTGACT+GGG | - | chr1.4:71390003-71390022 | MS.gene21357:intron | 20.0% |
| !!! | TTGTTTTTTTCTCATTACTT+AGG | - | chr1.4:71390973-71390992 | MS.gene21357:intron | 20.0% |
| ! | AAAAAAGTAAACCTACAGAT+AGG | + | chr1.4:71390906-71390925 | None:intergenic | 25.0% |
| ! | AAAAACTTGGAATGCTTAAT+AGG | + | chr1.4:71391705-71391724 | None:intergenic | 25.0% |
| ! | AAATATATACCAAAAGTCCT+TGG | + | chr1.4:71389368-71389387 | None:intergenic | 25.0% |
| ! | AAGGATAAAGTCAAGAATAT+CGG | - | chr1.4:71389192-71389211 | MS.gene21357:CDS | 25.0% |
| ! | AATTATCCAAAACGCTTTAA+AGG | - | chr1.4:71392021-71392040 | MS.gene21357:intron | 25.0% |
| ! | AATTTATACCACTCATTAGT+TGG | + | chr1.4:71389558-71389577 | None:intergenic | 25.0% |
| ! | ATAAGTGGGAAAAAAAGAAA+AGG | + | chr1.4:71390064-71390083 | None:intergenic | 25.0% |
| ! | ATCTTCATAAATCAAGTTTC+AGG | + | chr1.4:71391739-71391758 | None:intergenic | 25.0% |
| ! | ATGTTGTATGTTATATATGC+AGG | - | chr1.4:71392573-71392592 | MS.gene21357:intron | 25.0% |
| ! | ATTAAGAACATACACATTTC+TGG | + | chr1.4:71390230-71390249 | None:intergenic | 25.0% |
| ! | ATTAGGTGAATATGTTGATA+TGG | - | chr1.4:71392458-71392477 | MS.gene21357:intron | 25.0% |
| ! | CTTATTCAATCATATTTCAG+AGG | - | chr1.4:71388978-71388997 | MS.gene21357:CDS | 25.0% |
| ! | GAAACTTGATTTATGAAGAT+TGG | - | chr1.4:71391739-71391758 | MS.gene21357:intron | 25.0% |
| ! | GCAAGAATTATCATTAATCT+TGG | - | chr1.4:71389980-71389999 | MS.gene21357:CDS | 25.0% |
| ! | GGTAAATGTAGTAGAATAAA+AGG | - | chr1.4:71388911-71388930 | MS.gene21357:intron | 25.0% |
| ! | TATCATGCTAATAATTTACC+AGG | + | chr1.4:71391856-71391875 | None:intergenic | 25.0% |
| ! | TATGTTGATATGGTTAAATC+TGG | - | chr1.4:71392468-71392487 | MS.gene21357:intron | 25.0% |
| ! | TGAAAATTCATCTACAGATT+AGG | - | chr1.4:71391545-71391564 | MS.gene21357:intron | 25.0% |
| ! | TTATGACAAGGAAAAATTAC+AGG | - | chr1.4:71391594-71391613 | MS.gene21357:intron | 25.0% |
| !! | AAAGTTGATCTTGAAATGTT+CGG | - | chr1.4:71391197-71391216 | MS.gene21357:intron | 25.0% |
| !! | ACATTTTACATGCTGATATT+GGG | - | chr1.4:71389514-71389533 | MS.gene21357:intron | 25.0% |
| !! | ATTTAGAATAAGAGTTGCAA+GGG | + | chr1.4:71390852-71390871 | None:intergenic | 25.0% |
| !! | CTAATGAGTGGTATAAATTT+TGG | - | chr1.4:71389559-71389578 | MS.gene21357:intron | 25.0% |
| !! | TATTTAGAATAAGAGTTGCA+AGG | + | chr1.4:71390853-71390872 | None:intergenic | 25.0% |
| !!! | ATAAATGTATGTTTTTGCAC+AGG | - | chr1.4:71391917-71391936 | MS.gene21357:intron | 25.0% |
| !!! | ATTACATTTCTCCTGTTTTT+AGG | - | chr1.4:71389086-71389105 | MS.gene21357:intron | 25.0% |
| !!! | CAAATTTTTTATATCCTACC+TGG | + | chr1.4:71392541-71392560 | None:intergenic | 25.0% |
| !!! | GTTATATGTGTTTTTTTGAC+TGG | - | chr1.4:71390002-71390021 | MS.gene21357:intron | 25.0% |
| !!! | TAGAGATTTGTTTTATTCCT+AGG | - | chr1.4:71389388-71389407 | MS.gene21357:CDS | 25.0% |
| !!! | TTAAAGCGTTTTGGATAATT+TGG | + | chr1.4:71392021-71392040 | None:intergenic | 25.0% |
| !!! | TTAATTTGTGTTGCATAGAT+TGG | - | chr1.4:71388706-71388725 | MS.gene21357:CDS | 25.0% |
| !!! | TTACATTTCTCCTGTTTTTA+GGG | - | chr1.4:71389087-71389106 | MS.gene21357:intron | 25.0% |
| !!! | TTCTGGTTTGTTATGAAATA+CGG | + | chr1.4:71390204-71390223 | None:intergenic | 25.0% |
| AATTCATCTACAGATTAGGT+CGG | - | chr1.4:71391549-71391568 | MS.gene21357:intron | 30.0% | |
| ACCTATCTTCTGATCAAAAT+TGG | + | chr1.4:71391996-71392015 | None:intergenic | 30.0% | |
| ACTTGATTTATGAAGATTGG+AGG | - | chr1.4:71391742-71391761 | MS.gene21357:CDS | 30.0% | |
| AGACAAGGAAAAAGAAAACA+AGG | + | chr1.4:71392347-71392366 | None:intergenic | 30.0% | |
| ATCACAAAGCATACAAAAGT+AGG | + | chr1.4:71388516-71388535 | None:intergenic | 30.0% | |
| CAGATTAAACTCTATATTGC+AGG | + | chr1.4:71392128-71392147 | None:intergenic | 30.0% | |
| CATTTATCAGATATGTTTGG+AGG | + | chr1.4:71391904-71391923 | None:intergenic | 30.0% | |
| GACAACGATACAGATAAATA+TGG | + | chr1.4:71390523-71390542 | None:intergenic | 30.0% | |
| GGAAAAATTACAGGAAAGAT+TGG | - | chr1.4:71391603-71391622 | MS.gene21357:intron | 30.0% | |
| GGTGTTAGTTATGAAAAACT+TGG | + | chr1.4:71391718-71391737 | None:intergenic | 30.0% | |
| TATCTTCTGATCAAAATTGG+CGG | + | chr1.4:71391993-71392012 | None:intergenic | 30.0% | |
| TATTTATCTGTATCGTTGTC+AGG | - | chr1.4:71390523-71390542 | MS.gene21357:intron | 30.0% | |
| TGGAATAATTGATCCATTGA+AGG | - | chr1.4:71392488-71392507 | MS.gene21357:intron | 30.0% | |
| TGGTGATAAGAAATCAATTG+AGG | - | chr1.4:71391399-71391418 | MS.gene21357:CDS | 30.0% | |
| ! | AATCTGTCTTTTAGACAGTA+TGG | - | chr1.4:71392142-71392161 | MS.gene21357:intron | 30.0% |
| ! | ACTTTTGTATGCTTTGTGAT+TGG | - | chr1.4:71388516-71388535 | MS.gene21357:CDS | 30.0% |
| ! | ATCATGTTGCATCTCAATTT+TGG | - | chr1.4:71390346-71390365 | MS.gene21357:CDS | 30.0% |
| ! | CACATTTTACATGCTGATAT+TGG | - | chr1.4:71389513-71389532 | MS.gene21357:intron | 30.0% |
| ! | TTAATTTTGCAATGCTAGGT+TGG | - | chr1.4:71389843-71389862 | MS.gene21357:intron | 30.0% |
| !! | AGTATTAGAGTTAGCTTTGA+AGG | - | chr1.4:71390701-71390720 | MS.gene21357:intron | 30.0% |
| !! | TATTTGAGATTTTCTTCTCG+TGG | + | chr1.4:71390665-71390684 | None:intergenic | 30.0% |
| !! | TTGTCAACTATTTTTCTTGC+TGG | - | chr1.4:71392429-71392448 | MS.gene21357:intron | 30.0% |
| !! | TTTCTTGCTGGTTTGTAATT+AGG | - | chr1.4:71392441-71392460 | MS.gene21357:intron | 30.0% |
| !!! | CTTTTTCCTTGTCTTGTTTA+AGG | - | chr1.4:71392353-71392372 | MS.gene21357:intron | 30.0% |
| AAAAAAGCAGCAAGTTAGTC+AGG | + | chr1.4:71392602-71392621 | None:intergenic | 35.0% | |
| AAACCAGAATACGCTAACAA+TGG | + | chr1.4:71391472-71391491 | None:intergenic | 35.0% | |
| AAAGAGCAAAACACAATGAC+TGG | + | chr1.4:71390378-71390397 | None:intergenic | 35.0% | |
| AAGAATGACAGTGTCATCTT+TGG | + | chr1.4:71391371-71391390 | None:intergenic | 35.0% | |
| AATGTTCGGTTCTTGCAAAA+AGG | - | chr1.4:71391211-71391230 | MS.gene21357:intron | 35.0% | |
| ATTCTAAATAAGCTTCGTGC+TGG | - | chr1.4:71390863-71390882 | MS.gene21357:intron | 35.0% | |
| CAAGACATTGCAAAATGAGT+TGG | - | chr1.4:71390137-71390156 | MS.gene21357:CDS | 35.0% | |
| CATACAATTGCATCAAATGC+TGG | - | chr1.4:71392238-71392257 | MS.gene21357:CDS | 35.0% | |
| GAAACTCCTTAAACAAGACA+AGG | + | chr1.4:71392362-71392381 | None:intergenic | 35.0% | |
| GAGATATATAATGCTGATGC+TGG | - | chr1.4:71388933-71388952 | MS.gene21357:intron | 35.0% | |
| GTGGTAACAAATAGATGTCA+TGG | + | chr1.4:71390614-71390633 | None:intergenic | 35.0% | |
| TAATAGGCATATTAGCCACA+AGG | - | chr1.4:71389785-71389804 | MS.gene21357:CDS | 35.0% | |
| TAGCACTTCAGATTATGACA+AGG | - | chr1.4:71391582-71391601 | MS.gene21357:intron | 35.0% | |
| TAGGTAATCACGAATCAACA+TGG | + | chr1.4:71388497-71388516 | None:intergenic | 35.0% | |
| TCCTCAGCAACAATCAATAA+AGG | + | chr1.4:71390815-71390834 | None:intergenic | 35.0% | |
| TCTAATATATACCACGTCCT+AGG | + | chr1.4:71389408-71389427 | None:intergenic | 35.0% | |
| TGAGTTAATTGCAAAAGCCA+TGG | - | chr1.4:71389899-71389918 | MS.gene21357:intron | 35.0% | |
| TTAATATCTTCCAGTCCTAC+AGG | + | chr1.4:71389028-71389047 | None:intergenic | 35.0% | |
| TTACCATTGTTAGCGTATTC+TGG | - | chr1.4:71391466-71391485 | MS.gene21357:intron | 35.0% | |
| TTATCTATCCACGATAGTAG+TGG | - | chr1.4:71390320-71390339 | MS.gene21357:CDS | 35.0% | |
| TTGATCCATTGAAGGTGATT+AGG | - | chr1.4:71392496-71392515 | MS.gene21357:intron | 35.0% | |
| TTGGCACAATATCTGCTAAT+GGG | - | chr1.4:71389862-71389881 | MS.gene21357:intron | 35.0% | |
| TTTCTAATGCTGCTATGTAG+AGG | + | chr1.4:71390258-71390277 | None:intergenic | 35.0% | |
| TTTGATGCAATTGTATGCAC+AGG | + | chr1.4:71392235-71392254 | None:intergenic | 35.0% | |
| ! | AAGGTTTGCTTAGTTACCTT+AGG | + | chr1.4:71388853-71388872 | None:intergenic | 35.0% |
| ! | AATGAGTTGGAAGTTGTTGA+AGG | - | chr1.4:71390150-71390169 | MS.gene21357:CDS | 35.0% |
| ! | ACCTTTATTGATTGTTGCTG+AGG | - | chr1.4:71390811-71390830 | MS.gene21357:CDS | 35.0% |
| ! | AGTCATTGTGTTTTGCTCTT+TGG | - | chr1.4:71390377-71390396 | MS.gene21357:intron | 35.0% |
| ! | ATCCTTTTACACACTTCAGA+TGG | - | chr1.4:71388353-71388372 | MS.gene21357:CDS | 35.0% |
| ! | TGACATCTATTTGTTACCAC+AGG | - | chr1.4:71390614-71390633 | MS.gene21357:intron | 35.0% |
| ! | TTCTCGTGGATTATAATGAG+AGG | + | chr1.4:71390651-71390670 | None:intergenic | 35.0% |
| !! | AATGTATGTTTTTGCACAGG+TGG | - | chr1.4:71391920-71391939 | MS.gene21357:intron | 35.0% |
| !! | ATAAAAAGCATCAGCAAGCA+AGG | + | chr1.4:71391680-71391699 | None:intergenic | 35.0% |
| !! | ATACACATTTCTGGTTCTTC+TGG | + | chr1.4:71390221-71390240 | None:intergenic | 35.0% |
| !! | ATGGTAAGCTGTTTTATCCA+TGG | - | chr1.4:71389265-71389284 | MS.gene21357:intron | 35.0% |
| !! | GCCAATTTTGATCAGAAGAT+AGG | - | chr1.4:71391992-71392011 | MS.gene21357:intron | 35.0% |
| !! | GGAGCATCTTTATCTTCTTT+TGG | + | chr1.4:71392679-71392698 | None:intergenic | 35.0% |
| !! | GGTTTGTTTTTCCTATCTGT+AGG | - | chr1.4:71390892-71390911 | MS.gene21357:intron | 35.0% |
| !! | TGAGTGGTATAAATTTTGGC+AGG | - | chr1.4:71389563-71389582 | MS.gene21357:intron | 35.0% |
| !!! | AACACACCTTTAAAGCGTTT+TGG | + | chr1.4:71392030-71392049 | None:intergenic | 35.0% |
| !!! | ACTCCATCTTTTGTCACTTT+AGG | + | chr1.4:71389147-71389166 | None:intergenic | 35.0% |
| !!! | CTCCATCTTTTGTCACTTTA+GGG | + | chr1.4:71389146-71389165 | None:intergenic | 35.0% |
| !!! | GGTTTTATTCCAAGGACTTT+TGG | - | chr1.4:71389356-71389375 | MS.gene21357:CDS | 35.0% |
| !!! | GTTGATTCGGTTTTATTCCA+AGG | - | chr1.4:71389348-71389367 | MS.gene21357:intron | 35.0% |
| !!! | GTTGATTCGGTTTTATTCCT+AGG | - | chr1.4:71389320-71389339 | MS.gene21357:intron | 35.0% |
| !!! | TACATGCTGGTTTTATTCCT+AGG | - | chr1.4:71389454-71389473 | MS.gene21357:intron | 35.0% |
| !!! | TCCATCTTTTGTCACTTTAG+GGG | + | chr1.4:71389145-71389164 | None:intergenic | 35.0% |
| !!! | TGTTGGTAAACTTTTGGAAC+AGG | - | chr1.4:71392279-71392298 | MS.gene21357:intron | 35.0% |
| !!! | TTTGTTTTATTCCTAGGACG+TGG | - | chr1.4:71389394-71389413 | MS.gene21357:CDS | 35.0% |
| AAACAAGGAACACTGACCTT+TGG | + | chr1.4:71392332-71392351 | None:intergenic | 40.0% | |
| AAAGCTCGGTAAGTCATCAA+TGG | - | chr1.4:71388305-71388324 | MS.gene21357:CDS | 40.0% | |
| AAGATTCATGCCAAGCTCTT+CGG | + | chr1.4:71391174-71391193 | None:intergenic | 40.0% | |
| AATACGGAGAAATGTAGCCT+CGG | + | chr1.4:71390188-71390207 | None:intergenic | 40.0% | |
| AATTGAGGAAAGATGTGAGC+AGG | - | chr1.4:71391414-71391433 | MS.gene21357:intron | 40.0% | |
| ACAAAAGTCGCAACTACGAT+AGG | + | chr1.4:71390416-71390435 | None:intergenic | 40.0% | |
| ACGGCAAGATGACAATAAGT+GGG | + | chr1.4:71390078-71390097 | None:intergenic | 40.0% | |
| AGATGCCTTAAATGCAACCA+AGG | - | chr1.4:71391807-71391826 | MS.gene21357:CDS | 40.0% | |
| AGGCAAGTGATGAAGCAAAA+CGG | + | chr1.4:71388283-71388302 | None:intergenic | 40.0% | |
| ATCCTTCCGTAAATATTGCC+CGG | + | chr1.4:71389613-71389632 | None:intergenic | 40.0% | |
| ATGCTGGGTTATAACGTTTC+AGG | - | chr1.4:71390110-71390129 | MS.gene21357:intron | 40.0% | |
| ATGGAGAAAGTTGGCAAAGA+AGG | - | chr1.4:71389918-71389937 | MS.gene21357:intron | 40.0% | |
| ATTCCACTGCGAATATGTGA+AGG | + | chr1.4:71388882-71388901 | None:intergenic | 40.0% | |
| ATTGATTGTTGCTGAGGATG+TGG | - | chr1.4:71390817-71390836 | MS.gene21357:CDS | 40.0% | |
| ATTGCAGGATTAAGCCTGAA+AGG | + | chr1.4:71392113-71392132 | None:intergenic | 40.0% | |
| CAAAGAGATCAAATTTGGCG+TGG | - | chr1.4:71388762-71388781 | MS.gene21357:intron | 40.0% | |
| CACGCCAAATTTGATCTCTT+TGG | + | chr1.4:71388764-71388783 | None:intergenic | 40.0% | |
| CCAAAACTGAGCAATCATTG+AGG | + | chr1.4:71391295-71391314 | None:intergenic | 40.0% | |
| CTGCGAATATGTGAAGGAAA+CGG | + | chr1.4:71388876-71388895 | None:intergenic | 40.0% | |
| GAACAGGATAATCCTGATCT+TGG | - | chr1.4:71392295-71392314 | MS.gene21357:intron | 40.0% | |
| GAATATGTGAAGGAAACGGA+AGG | + | chr1.4:71388872-71388891 | None:intergenic | 40.0% | |
| GAGGCAGTTAAAGTAACCAT+GGG | - | chr1.4:71388826-71388845 | MS.gene21357:intron | 40.0% | |
| GATGACACTGTCATTCTTGA+TGG | - | chr1.4:71391373-71391392 | MS.gene21357:CDS | 40.0% | |
| GCTAATGGGGATAGAGAAAT+TGG | - | chr1.4:71389876-71389895 | MS.gene21357:intron | 40.0% | |
| GCTGCCAAAGAGATCAAATT+TGG | - | chr1.4:71388757-71388776 | MS.gene21357:CDS | 40.0% | |
| GTTGGCACAATATCTGCTAA+TGG | - | chr1.4:71389861-71389880 | MS.gene21357:intron | 40.0% | |
| TAAAGTAACCATGGGTCCTA+AGG | - | chr1.4:71388834-71388853 | MS.gene21357:intron | 40.0% | |
| TAAGCTTCGTGCTGGAATTA+AGG | - | chr1.4:71390871-71390890 | MS.gene21357:intron | 40.0% | |
| TACAGACTCATGACAATGCA+TGG | + | chr1.4:71390571-71390590 | None:intergenic | 40.0% | |
| TCTTACCCGGGCAATATTTA+CGG | - | chr1.4:71389604-71389623 | MS.gene21357:CDS | 40.0% | |
| TGAGGCAGTTAAAGTAACCA+TGG | - | chr1.4:71388825-71388844 | MS.gene21357:intron | 40.0% | |
| TGCAAATGCTACCAATGATG+TGG | - | chr1.4:71389236-71389255 | MS.gene21357:intron | 40.0% | |
| TGCATAGATTGGAAGTAGAG+TGG | - | chr1.4:71388717-71388736 | MS.gene21357:CDS | 40.0% | |
| TGGCACAATATCTGCTAATG+GGG | - | chr1.4:71389863-71389882 | MS.gene21357:intron | 40.0% | |
| TGGGTTATAACGTTTCAGGA+TGG | - | chr1.4:71390114-71390133 | MS.gene21357:intron | 40.0% | |
| TTCTGATCAAAATTGGCGGT+TGG | + | chr1.4:71391989-71392008 | None:intergenic | 40.0% | |
| TTCTTTGCCAACTTTCTCCA+TGG | + | chr1.4:71389919-71389938 | None:intergenic | 40.0% | |
| TTTCCTTCACATATTCGCAG+TGG | - | chr1.4:71388876-71388895 | MS.gene21357:intron | 40.0% | |
| TTTGCTCAATCACCACGTTA+CGG | + | chr1.4:71389113-71389132 | None:intergenic | 40.0% | |
| TTTGGGGAAAACAGGAAATC+TGG | - | chr1.4:71391019-71391038 | MS.gene21357:intron | 40.0% | |
| ! | ACTGTCATTCTTGATGGATC+TGG | - | chr1.4:71391379-71391398 | MS.gene21357:CDS | 40.0% |
| ! | AGCCATCTGAAGTGTGTAAA+AGG | + | chr1.4:71388358-71388377 | None:intergenic | 40.0% |
| ! | ATTGATGACTTACCGAGCTT+TGG | + | chr1.4:71388306-71388325 | None:intergenic | 40.0% |
| ! | CACTTCTGAAGAAATTGCTC+AGG | - | chr1.4:71389739-71389758 | MS.gene21357:intron | 40.0% |
| ! | CCTCAATGATTGCTCAGTTT+TGG | - | chr1.4:71391292-71391311 | MS.gene21357:CDS | 40.0% |
| ! | CTTTTGGATGCAGAATTGCT+AGG | - | chr1.4:71388581-71388600 | MS.gene21357:intron | 40.0% |
| ! | TACGGTCACATTTTACATGC+TGG | - | chr1.4:71389441-71389460 | MS.gene21357:intron | 40.0% |
| ! | TTGAGCATTGTGCATTGAGA+TGG | - | chr1.4:71388463-71388482 | MS.gene21357:intron | 40.0% |
| !! | AAGTTGGTGAGAAAAAGGAC+AGG | - | chr1.4:71391779-71391798 | MS.gene21357:CDS | 40.0% |
| !! | AGTTGGTGAGAAAAAGGACA+GGG | - | chr1.4:71391780-71391799 | MS.gene21357:CDS | 40.0% |
| !! | GGCTAAGAGCATTGAATTCA+AGG | - | chr1.4:71389173-71389192 | MS.gene21357:CDS | 40.0% |
| AAACAGGAAATCTGGTCTCC+AGG | - | chr1.4:71391027-71391046 | MS.gene21357:intron | 45.0% | |
| AAGCCTGAAAGGAATTGACG+AGG | + | chr1.4:71392102-71392121 | None:intergenic | 45.0% | |
| AATGCTACCAATGATGTGGC+TGG | - | chr1.4:71389240-71389259 | MS.gene21357:intron | 45.0% | |
| AGAGATCAAATTTGGCGTGG+AGG | - | chr1.4:71388765-71388784 | MS.gene21357:intron | 45.0% | |
| AGATTGGAAGTAGAGTGGCA+TGG | - | chr1.4:71388722-71388741 | MS.gene21357:CDS | 45.0% | |
| AGCCTGAAAGGAATTGACGA+GGG | + | chr1.4:71392101-71392120 | None:intergenic | 45.0% | |
| AGCTGCCTTGGTTGCATTTA+AGG | + | chr1.4:71391815-71391834 | None:intergenic | 45.0% | |
| ATATTAGCCACAAGGACTGC+AGG | - | chr1.4:71389793-71389812 | MS.gene21357:CDS | 45.0% | |
| ATGATGCTCCACTACTATCG+TGG | + | chr1.4:71390331-71390350 | None:intergenic | 45.0% | |
| CACGGCAAGATGACAATAAG+TGG | + | chr1.4:71390079-71390098 | None:intergenic | 45.0% | |
| CCAGCATATCACAAAGTGCA+CGG | + | chr1.4:71390097-71390116 | None:intergenic | 45.0% | |
| CCATATTTATACCTCGCCTC+AGG | + | chr1.4:71389670-71389689 | None:intergenic | 45.0% | |
| CCTGAGGCGAGGTATAAATA+TGG | - | chr1.4:71389667-71389686 | MS.gene21357:intron | 45.0% | |
| CGTGCACTTTGTGATATGCT+GGG | - | chr1.4:71390095-71390114 | MS.gene21357:intron | 45.0% | |
| CGTTGTGACCAACTAATGAG+TGG | - | chr1.4:71389547-71389566 | MS.gene21357:intron | 45.0% | |
| CTTAGTTACCTTAGGACCCA+TGG | + | chr1.4:71388845-71388864 | None:intergenic | 45.0% | |
| CTTGTGCTACAGTTCTTACC+CGG | - | chr1.4:71389591-71389610 | MS.gene21357:CDS | 45.0% | |
| GAATGAATGCAATGGACCTG+AGG | - | chr1.4:71389651-71389670 | MS.gene21357:intron | 45.0% | |
| GACAAAAGATGGAGTCACTG+TGG | - | chr1.4:71389152-71389171 | MS.gene21357:CDS | 45.0% | |
| GCAAAAGCCATGGAGAAAGT+TGG | - | chr1.4:71389909-71389928 | MS.gene21357:intron | 45.0% | |
| GCATCAAATGCTGGAGTAGA+GGG | - | chr1.4:71392247-71392266 | MS.gene21357:CDS | 45.0% | |
| GCCCCTAAAGTGACAAAAGA+TGG | - | chr1.4:71389141-71389160 | MS.gene21357:intron | 45.0% | |
| GCTCGTGCTTTGATGCTTAA+GGG | - | chr1.4:71388787-71388806 | MS.gene21357:intron | 45.0% | |
| GGTAAGAACTGTAGCACAAG+TGG | + | chr1.4:71389591-71389610 | None:intergenic | 45.0% | |
| GTGGTGATTGAGCAAAGCTT+TGG | - | chr1.4:71389117-71389136 | MS.gene21357:intron | 45.0% | |
| TCATGACAATGCATGGAGCA+AGG | + | chr1.4:71390564-71390583 | None:intergenic | 45.0% | |
| TCCTTCCGTAAATATTGCCC+GGG | + | chr1.4:71389612-71389631 | None:intergenic | 45.0% | |
| TCGCAGTGGAATGATGTCTT+TGG | - | chr1.4:71388890-71388909 | MS.gene21357:intron | 45.0% | |
| TGCAACCTGCTTTACAAGAC+TGG | + | chr1.4:71389220-71389239 | None:intergenic | 45.0% | |
| TGCAGCTGGAATGAATGCAA+TGG | - | chr1.4:71389643-71389662 | MS.gene21357:intron | 45.0% | |
| TGCATCAAATGCTGGAGTAG+AGG | - | chr1.4:71392246-71392265 | MS.gene21357:CDS | 45.0% | |
| TTCCTAGGACGTGGTTGATT+CGG | - | chr1.4:71389335-71389354 | MS.gene21357:intron | 45.0% | |
| TTGTGCTACAGTTCTTACCC+GGG | - | chr1.4:71389592-71389611 | MS.gene21357:CDS | 45.0% | |
| TTTGTTACCACAGGAACTCG+AGG | - | chr1.4:71390623-71390642 | MS.gene21357:intron | 45.0% | |
| ! | AGAGGGAAGAACACTAGCTT+TGG | - | chr1.4:71388996-71389015 | MS.gene21357:CDS | 45.0% |
| ! | GAAAGATTGGCCAAGCTTTC+TGG | - | chr1.4:71391616-71391635 | MS.gene21357:intron | 45.0% |
| ! | TCCTGTTTTCCCCAAAACCA+GGG | + | chr1.4:71391015-71391034 | None:intergenic | 45.0% |
| ! | TTCCTGTTTTCCCCAAAACC+AGG | + | chr1.4:71391016-71391035 | None:intergenic | 45.0% |
| !! | GGCTGAAGTTGGTGAGAAAA+AGG | - | chr1.4:71391774-71391793 | MS.gene21357:CDS | 45.0% |
| !! | GTATGTTTTTGCACAGGTGG+TGG | - | chr1.4:71391923-71391942 | MS.gene21357:intron | 45.0% |
| !! | TAGCTTTGGTTGTAGCCTGT+AGG | - | chr1.4:71389010-71389029 | MS.gene21357:CDS | 45.0% |
| !!! | CTGGTTTTATTCCTAGGACG+TGG | - | chr1.4:71389460-71389479 | MS.gene21357:intron | 45.0% |
| !!! | TCGGTTTTATTCCTAGGACG+TGG | - | chr1.4:71389326-71389345 | MS.gene21357:intron | 45.0% |
| !! | TTAGAAATTAAATTTAAATA+CGG | - | chr1.4:71389489-71389508 | MS.gene21357:intron | 5.0% |
| !!! | AAGAAAATATTAATATATTT+TGG | - | chr1.4:71391094-71391113 | MS.gene21357:CDS | 5.0% |
| AACCGAATCAACCACGTCCT+AGG | + | chr1.4:71389340-71389359 | None:intergenic | 50.0% | |
| ACCAATGATGTGGCTGGTGA+TGG | - | chr1.4:71389246-71389265 | MS.gene21357:intron | 50.0% | |
| ACCATCACCAGCCACATCAT+TGG | + | chr1.4:71389250-71389269 | None:intergenic | 50.0% | |
| ACCCGGGCAATATTTACGGA+AGG | - | chr1.4:71389608-71389627 | MS.gene21357:CDS | 50.0% | |
| CAAGGAACACTGACCTTTGG+CGG | + | chr1.4:71392329-71392348 | None:intergenic | 50.0% | |
| CACGTTACGGCCCTAAAAAC+AGG | + | chr1.4:71389100-71389119 | None:intergenic | 50.0% | |
| CAGCTTATCACCGAAGAGCT+TGG | - | chr1.4:71391161-71391180 | MS.gene21357:intron | 50.0% | |
| CAGGATCTCGCTGTTCTTAC+AGG | - | chr1.4:71391046-71391065 | MS.gene21357:intron | 50.0% | |
| CATCACTTGCCTCCAAAGCT+CGG | - | chr1.4:71388291-71388310 | MS.gene21357:CDS | 50.0% | |
| CCGTGCACTTTGTGATATGC+TGG | - | chr1.4:71390094-71390113 | MS.gene21357:intron | 50.0% | |
| CGAGGGAGGAGAATGGAATA+TGG | + | chr1.4:71392084-71392103 | None:intergenic | 50.0% | |
| CTCCCTCGTCAATTCCTTTC+AGG | - | chr1.4:71392096-71392115 | MS.gene21357:intron | 50.0% | |
| CTGAAAGGAATTGACGAGGG+AGG | + | chr1.4:71392098-71392117 | None:intergenic | 50.0% | |
| CTGTAAGAACAGCGAGATCC+TGG | + | chr1.4:71391048-71391067 | None:intergenic | 50.0% | |
| GAAGGAATGAAGCTTGACCG+AGG | - | chr1.4:71390168-71390187 | MS.gene21357:CDS | 50.0% | |
| GAATTGACGAGGGAGGAGAA+TGG | + | chr1.4:71392091-71392110 | None:intergenic | 50.0% | |
| GATCTCGCTGTTCTTACAGG+AGG | - | chr1.4:71391049-71391068 | MS.gene21357:intron | 50.0% | |
| GCGGTCCTAATCACCTTCAA+TGG | + | chr1.4:71392504-71392523 | None:intergenic | 50.0% | |
| GGATGCAAATCAGTTGCAGC+TGG | - | chr1.4:71389629-71389648 | MS.gene21357:CDS | 50.0% | |
| GGCTCGTGCTTTGATGCTTA+AGG | - | chr1.4:71388786-71388805 | MS.gene21357:intron | 50.0% | |
| TAGTCCATACCACCCATACC+AGG | + | chr1.4:71392709-71392728 | None:intergenic | 50.0% | |
| TGCAACTCCTCCAGAAAGCT+TGG | + | chr1.4:71391629-71391648 | None:intergenic | 50.0% | |
| TGCTAGGAGCAACGCTAATC+AGG | - | chr1.4:71388597-71388616 | MS.gene21357:intron | 50.0% | |
| TGGAGGAGTTGCAGTGCTTA+AGG | - | chr1.4:71391636-71391655 | MS.gene21357:intron | 50.0% | |
| TTGGTTGTAGCCTGTAGGAC+TGG | - | chr1.4:71389015-71389034 | MS.gene21357:CDS | 50.0% | |
| ! | AGATTGGCCAAGCTTTCTGG+AGG | - | chr1.4:71391619-71391638 | MS.gene21357:intron | 50.0% |
| ! | CCTGTTTTCCCCAAAACCAG+GGG | + | chr1.4:71391014-71391033 | None:intergenic | 50.0% |
| ! | GATGACTTACCGAGCTTTGG+AGG | + | chr1.4:71388303-71388322 | None:intergenic | 50.0% |
| !! | CGATCAAAGCCCCTGGTTTT+GGG | - | chr1.4:71391002-71391021 | MS.gene21357:intron | 50.0% |
| !! | GGGTGTTGAAGAACTTGCTG+AGG | - | chr1.4:71388807-71388826 | MS.gene21357:intron | 50.0% |
| !!! | CTGTTTTTAGGGCCGTAACG+TGG | - | chr1.4:71389098-71389117 | MS.gene21357:intron | 50.0% |
| !!! | GATCAAAGCCCCTGGTTTTG+GGG | - | chr1.4:71391003-71391022 | MS.gene21357:intron | 50.0% |
| AAAGATGCTCCTGCCATGCC+TGG | - | chr1.4:71392688-71392707 | MS.gene21357:intron | 55.0% | |
| AACCAAGGCAGCTGTAGAGG+AGG | - | chr1.4:71391822-71391841 | MS.gene21357:CDS | 55.0% | |
| AATGCAATGGACCTGAGGCG+AGG | - | chr1.4:71389656-71389675 | MS.gene21357:intron | 55.0% | |
| ACCAAGGCAGCTGTAGAGGA+GGG | - | chr1.4:71391823-71391842 | MS.gene21357:CDS | 55.0% | |
| AGAGGATCCTCGAGTTCCTG+TGG | + | chr1.4:71390633-71390652 | None:intergenic | 55.0% | |
| ATGGAGCAAGGACACCGACA+CGG | + | chr1.4:71390552-71390571 | None:intergenic | 55.0% | |
| CATACCACCCATACCAGGCA+TGG | + | chr1.4:71392704-71392723 | None:intergenic | 55.0% | |
| CATGCCTGGTATGGGTGGTA+TGG | - | chr1.4:71392702-71392721 | MS.gene21357:CDS | 55.0% | |
| CTACTGTCCTGCAGTCCTTG+TGG | + | chr1.4:71389803-71389822 | None:intergenic | 55.0% | |
| CTCACCAACTTCAGCCTCAC+TGG | + | chr1.4:71391770-71391789 | None:intergenic | 55.0% | |
| CTTGGTTACGATGCCGCCAA+AGG | - | chr1.4:71392313-71392332 | MS.gene21357:intron | 55.0% | |
| GAAGATTGGAGGAGCCAGTG+AGG | - | chr1.4:71391753-71391772 | MS.gene21357:CDS | 55.0% | |
| GAAGGTGATTAGGACCGCCT+TGG | - | chr1.4:71392506-71392525 | MS.gene21357:intron | 55.0% | |
| GCGGCATCGTAACCAAGATC+AGG | + | chr1.4:71392310-71392329 | None:intergenic | 55.0% | |
| GTATGTGCGATCAAAGCCCC+TGG | - | chr1.4:71390995-71391014 | MS.gene21357:intron | 55.0% | |
| TCGTTGTCAGGTGTCCGTGT+CGG | - | chr1.4:71390535-71390554 | MS.gene21357:intron | 55.0% | |
| TGCAACCAAGGCAGCTGTAG+AGG | - | chr1.4:71391819-71391838 | MS.gene21357:CDS | 55.0% | |
| ! | CGGTGCCAGTCTTGTAAAGC+AGG | - | chr1.4:71389212-71389231 | MS.gene21357:CDS | 55.0% |
| ! | GCGATCAAAGCCCCTGGTTT+TGG | - | chr1.4:71391001-71391020 | MS.gene21357:intron | 55.0% |
| ! | GTAGAGGAGGGCATAGTACC+TGG | - | chr1.4:71391835-71391854 | MS.gene21357:CDS | 55.0% |
| !!! | CCCCTGGTTTTGGGGAAAAC+AGG | - | chr1.4:71391011-71391030 | MS.gene21357:intron | 55.0% |
| CTACCTGGCTGCGTCAACCA+AGG | + | chr1.4:71392526-71392545 | None:intergenic | 60.0% | |
| CTTGGTTGACGCAGCCAGGT+AGG | - | chr1.4:71392524-71392543 | MS.gene21357:intron | 60.0% | |
| GCTCCTGCCATGCCTGGTAT+GGG | - | chr1.4:71392694-71392713 | MS.gene21357:intron | 60.0% | |
| GGAGCCAGTGAGGCTGAAGT+TGG | - | chr1.4:71391763-71391782 | MS.gene21357:CDS | 60.0% | |
| TGCTCCTGCCATGCCTGGTA+TGG | - | chr1.4:71392693-71392712 | MS.gene21357:intron | 60.0% | |
| CCACCCATACCAGGCATGGC+AGG | + | chr1.4:71392700-71392719 | None:intergenic | 65.0% | |
| CCTGCCATGCCTGGTATGGG+TGG | - | chr1.4:71392697-71392716 | MS.gene21357:CDS | 65.0% | |
| CCTGGCTGCGTCAACCAAGG+CGG | + | chr1.4:71392523-71392542 | None:intergenic | 65.0% | |
| GCCCTCCTCTACAGCTGCCT+TGG | + | chr1.4:71391827-71391846 | None:intergenic | 65.0% | |
| CCGCCTTGGTTGACGCAGCC+AGG | - | chr1.4:71392520-71392539 | MS.gene21357:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 71388275 | 71392732 | 71388275 | ID=MS.gene21357 |
| chr1.4 | mRNA | 71388275 | 71392732 | 71388275 | ID=MS.gene21357.t1;Parent=MS.gene21357 |
| chr1.4 | exon | 71392695 | 71392732 | 71392695 | ID=MS.gene21357.t1.exon1;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71392695 | 71392732 | 71392695 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71392389 | 71392413 | 71392389 | ID=MS.gene21357.t1.exon2;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71392389 | 71392413 | 71392389 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71392152 | 71392283 | 71392152 | ID=MS.gene21357.t1.exon3;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71392152 | 71392283 | 71392152 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71391740 | 71391899 | 71391740 | ID=MS.gene21357.t1.exon4;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71391740 | 71391899 | 71391740 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71391247 | 71391422 | 71391247 | ID=MS.gene21357.t1.exon5;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71391247 | 71391422 | 71391247 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71391051 | 71391146 | 71391051 | ID=MS.gene21357.t1.exon6;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71391051 | 71391146 | 71391051 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71390771 | 71390875 | 71390771 | ID=MS.gene21357.t1.exon7;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71390771 | 71390875 | 71390771 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71390285 | 71390371 | 71390285 | ID=MS.gene21357.t1.exon8;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71390285 | 71390371 | 71390285 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71390115 | 71390204 | 71390115 | ID=MS.gene21357.t1.exon9;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71390115 | 71390204 | 71390115 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71389932 | 71390012 | 71389932 | ID=MS.gene21357.t1.exon10;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71389932 | 71390012 | 71389932 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71389775 | 71389843 | 71389775 | ID=MS.gene21357.t1.exon11;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71389775 | 71389843 | 71389775 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71389572 | 71389649 | 71389572 | ID=MS.gene21357.t1.exon12;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71389572 | 71389649 | 71389572 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71389350 | 71389445 | 71389350 | ID=MS.gene21357.t1.exon13;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71389350 | 71389445 | 71389350 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71389151 | 71389250 | 71389151 | ID=MS.gene21357.t1.exon14;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71389151 | 71389250 | 71389151 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71388965 | 71389068 | 71388965 | ID=MS.gene21357.t1.exon15;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71388965 | 71389068 | 71388965 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71388673 | 71388778 | 71388673 | ID=MS.gene21357.t1.exon16;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71388673 | 71388778 | 71388673 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71388466 | 71388544 | 71388466 | ID=MS.gene21357.t1.exon17;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71388466 | 71388544 | 71388466 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| chr1.4 | exon | 71388275 | 71388377 | 71388275 | ID=MS.gene21357.t1.exon18;Parent=MS.gene21357.t1 |
| chr1.4 | CDS | 71388275 | 71388377 | 71388275 | ID=cds.MS.gene21357.t1;Parent=MS.gene21357.t1 |
| Gene Sequence |
| Protein sequence |
