AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21583

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21583.t1 MTR_1g090140 99.477 574 3 0 1 574 1 574 0.0 1147
MS.gene21583.t1 MTR_1g090130 95.018 562 28 0 1 562 1 562 0.0 1080
MS.gene21583.t1 MTR_8g017080 70.833 576 166 2 1 574 1 576 0.0 803
MS.gene21583.t1 MTR_1g017390 47.664 535 274 4 34 564 47 579 2.34e-167 488
MS.gene21583.t1 MTR_1g017380 47.477 535 275 4 34 564 47 579 6.85e-167 487
MS.gene21583.t1 MTR_4g057970 45.537 549 287 5 19 558 28 573 1.59e-158 466
MS.gene21583.t1 MTR_4g084130 40.850 541 313 6 33 569 40 577 9.28e-136 407
MS.gene21583.t1 MTR_4g084130 39.700 466 275 5 108 569 2 465 1.45e-110 338
MS.gene21583.t1 MTR_0991s0010 50.758 132 63 1 34 163 47 178 2.13e-34 129
MS.gene21583.t1 MTR_3g090510 90.164 61 6 0 117 177 100 160 4.98e-27 113
MS.gene21583.t1 MTR_7g060560 82.812 64 11 0 114 177 90 153 1.69e-25 108
MS.gene21583.t1 MTR_1g037030 68.333 60 4 1 119 178 59 103 2.65e-15 75.5
MS.gene21583.t1 MTR_7g113470 24.429 569 325 22 40 562 16 525 1.61e-14 76.6
MS.gene21583.t1 MTR_7g067470 24.077 569 327 22 40 562 16 525 1.07e-13 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21583.t1 AT3G23990 90.231 563 54 1 1 563 1 562 0.0 1027
MS.gene21583.t1 AT2G33210 86.879 564 74 0 1 564 1 564 0.0 998
MS.gene21583.t1 AT2G33210 86.170 564 73 1 1 564 1 559 0.0 983
MS.gene21583.t1 AT3G13860 72.826 552 147 2 22 572 21 570 0.0 810
MS.gene21583.t1 AT5G56500 47.731 551 283 3 28 574 46 595 7.31e-172 500
MS.gene21583.t1 AT5G56500 47.731 551 283 3 28 574 46 595 7.31e-172 500
MS.gene21583.t1 AT3G13470 46.984 547 282 5 33 574 51 594 5.56e-165 483
MS.gene21583.t1 AT1G55490 46.801 547 283 5 33 574 55 598 2.73e-164 481
MS.gene21583.t1 AT1G55490 46.801 547 283 5 33 574 55 598 2.73e-164 481
MS.gene21583.t1 AT1G55490 46.801 547 283 5 33 574 55 598 2.73e-164 481
MS.gene21583.t1 AT1G55490 46.801 547 283 5 33 574 55 598 2.73e-164 481
MS.gene21583.t1 AT1G55490 46.801 547 283 5 33 574 55 598 2.73e-164 481
MS.gene21583.t1 AT1G26230 43.284 536 298 4 33 564 39 572 5.44e-156 460
MS.gene21583.t1 AT2G28000 44.697 528 288 3 28 553 42 567 3.24e-155 457
MS.gene21583.t1 AT1G26230 43.907 517 286 3 50 564 6 520 5.46e-155 456
MS.gene21583.t1 AT1G26230 44.055 513 283 3 54 564 2 512 1.13e-154 455
MS.gene21583.t1 AT1G26230 43.008 472 264 3 33 500 39 509 3.56e-137 410
MS.gene21583.t1 AT5G18820 39.444 540 321 4 34 569 35 572 3.43e-123 375
MS.gene21583.t1 AT1G26230 43.210 405 227 2 33 435 39 442 1.02e-119 362
MS.gene21583.t1 AT5G18820 38.412 466 282 3 108 569 2 466 2.96e-99 310
MS.gene21583.t1 AT5G18820 38.259 379 233 1 34 412 35 412 3.75e-82 264
MS.gene21583.t1 AT5G20890 23.199 569 332 21 40 562 16 525 6.38e-13 71.6

Find 138 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGCCTTGGTTGCATTTA+AGG 0.066385 1.3:+63032732 None:intergenic
GAAAGATTGGCCAAGCTTTC+TGG 0.129629 1.3:-63032927 MS.gene21583:CDS
AATTATCCAAAACGCTTTAA+AGG 0.167858 1.3:-63032523 MS.gene21583:intron
GTTAAGAACATACACATTTC+TGG 0.206681 1.3:+63034323 None:intergenic
GCGATCAAAGCCCCTGGTTT+TGG 0.249647 1.3:-63033536 MS.gene21583:CDS
TAAGCTTCGTGCTGGAATTA+AGG 0.250806 1.3:-63033666 MS.gene21583:intron
CAGGATCTCGCTGTTCTTAC+AGG 0.260673 1.3:-63033491 MS.gene21583:CDS
CACGCCAAATTTGATCTCTT+TGG 0.262496 1.3:+63035848 None:intergenic
GGAGCATCTTTATCTTCTTT+TGG 0.274868 1.3:+63031858 None:intergenic
GCTGCCAAAGAGATCAAATT+TGG 0.276119 1.3:-63035852 MS.gene21583:CDS
AACACACCTTTAAAGCGTTT+TGG 0.279175 1.3:+63032517 None:intergenic
GCTAATGGGGATAGAGAAAT+TGG 0.310768 1.3:-63034682 MS.gene21583:CDS
GGCTCGTGCTTTGATGCTTA+AGG 0.319494 1.3:-63035823 MS.gene21583:CDS
TGTTGTTGTTGGTAAACTTT+TGG 0.322472 1.3:-63032270 MS.gene21583:CDS
AGTATTAGAGTTAGCTTTGA+AGG 0.325433 1.3:-63033842 MS.gene21583:intron
TTCTGGTTTGTTATGAAATA+CGG 0.342174 1.3:+63034349 None:intergenic
AAGAATGACAGTGTCATCTT+TGG 0.342488 1.3:+63033169 None:intergenic
GATGACACTGTCATTCTTGA+TGG 0.343288 1.3:-63033164 MS.gene21583:CDS
TTGATCCATTGAAGGTGATT+AGG 0.344579 1.3:-63032038 MS.gene21583:CDS
TGGAGGAGTTGCAGTGCTTA+AGG 0.349238 1.3:-63032907 MS.gene21583:intron
ATACACATTTCTGGTTCTTC+TGG 0.367623 1.3:+63034332 None:intergenic
GAACAGGATAATCCTGATCT+TGG 0.368234 1.3:-63032248 MS.gene21583:CDS
ATTAGGTGAATATGTTGATA+TGG 0.372412 1.3:-63032076 MS.gene21583:intron
TTTGGGGAAAACAGGAAATC+TGG 0.375733 1.3:-63033518 MS.gene21583:CDS
ATTGATGACTTACCGAGCTT+TGG 0.376430 1.3:+63036304 None:intergenic
AATGTTCGGTTCTTGCAAAA+AGG 0.380948 1.3:-63033326 MS.gene21583:intron
TTGGCACAATATCTGCTAAT+GGG 0.388899 1.3:-63034696 MS.gene21583:CDS
GGCTGAAGTTGGTGAGAAAA+AGG 0.389181 1.3:-63032770 MS.gene21583:CDS
TGCTCCTGCCATGCCTGGTA+TGG 0.389510 1.3:-63031841 MS.gene21583:CDS
GCTCGTGCTTTGATGCTTAA+GGG 0.392668 1.3:-63035822 MS.gene21583:CDS
TGCTAGGAGCAACGCTAATC+AGG 0.394183 1.3:-63036012 MS.gene21583:intron
CTCACCAACTTCAGCCTCAC+TGG 0.395856 1.3:+63032777 None:intergenic
GTTGGCACAATATCTGCTAA+TGG 0.396523 1.3:-63034697 MS.gene21583:CDS
TATGTTGATATGGTTAAATC+TGG 0.397957 1.3:-63032066 MS.gene21583:CDS
AAAGTTGATCTTGAAATGTT+CGG 0.399954 1.3:-63033340 MS.gene21583:CDS
CACTTCTGAAGAAATTGCTC+AGG 0.402357 1.3:-63034819 MS.gene21583:intron
GCCCTCCTCTACAGCTGCCT+TGG 0.403912 1.3:+63032720 None:intergenic
CCTGAGGCGAGGTATAAATA+TGG 0.408456 1.3:-63034891 MS.gene21583:CDS
GGCTAAGAGCATTGAATTCA+AGG 0.411181 1.3:-63035436 MS.gene21583:CDS
CTGTAAGAACAGCGAGATCC+TGG 0.413061 1.3:+63033492 None:intergenic
GTAGAGGGTGCTGTTGTTGT+TGG 0.422645 1.3:-63032281 MS.gene21583:CDS
TTCTTTGCCAACTTTCTCCA+TGG 0.436356 1.3:+63034642 None:intergenic
AAGGATAAAGTCAAGAATAT+CGG 0.438011 1.3:-63035417 MS.gene21583:CDS
TCCTCAGCAACAATCAATAA+AGG 0.438194 1.3:+63033725 None:intergenic
AAGATTCATGCCAAGCTCTT+CGG 0.445204 1.3:+63033366 None:intergenic
GATGACTTACCGAGCTTTGG+AGG 0.447733 1.3:+63036307 None:intergenic
TGCAACCTGCTTTACTAGAC+TGG 0.457958 1.3:+63035392 None:intergenic
ATCCTTCTGTAAATATTGCC+CGG 0.473428 1.3:+63034948 None:intergenic
AATGAGTTGGAAGTTGTTGA+AGG 0.477205 1.3:-63034400 MS.gene21583:CDS
TGCAACTCCTCCAGAAAGCT+TGG 0.478495 1.3:+63032917 None:intergenic
GCGGTCCTAATCACCTTCAA+TGG 0.479235 1.3:+63032033 None:intergenic
CCGCCTTGGTTGACGCAGCC+AGG 0.479827 1.3:-63032014 MS.gene21583:intron
GCCCCTAAAGTGACAAAAGA+TGG 0.479995 1.3:-63035468 MS.gene21583:CDS
TGTTGCATAGATTGGAAGTA+GGG 0.486042 1.3:-63035895 MS.gene21583:intron
GCTCCTGCCATGCCTGGTAT+GGG 0.490109 1.3:-63031840 MS.gene21583:CDS
GCGGCATCGTAACCAAGATC+AGG 0.490844 1.3:+63032236 None:intergenic
TGGAATAATTGATCCATTGA+AGG 0.491715 1.3:-63032046 MS.gene21583:CDS
ATGGAGAAAGTTGGCAAAGA+AGG 0.492043 1.3:-63034640 MS.gene21583:CDS
TCTTCTCGTGGATTATAATG+AGG 0.495313 1.3:+63033893 None:intergenic
CTTCTCGTGGATTATAATGA+GGG 0.495517 1.3:+63033894 None:intergenic
CAAGACATTGCAAAATGAGT+TGG 0.496144 1.3:-63034413 MS.gene21583:CDS
CTTAGTTACCTTAGGACCCA+TGG 0.497517 1.3:+63035767 None:intergenic
AAAGATGCTCCTGCCATGCC+TGG 0.497620 1.3:-63031846 MS.gene21583:CDS
AAACAGGAAATCTGGTCTCC+AGG 0.499170 1.3:-63033510 MS.gene21583:CDS
AATTGAGGAAAGATGTGAGC+AGG 0.500933 1.3:-63033123 MS.gene21583:intron
TAAAGTAACCATGGGTCCTA+AGG 0.503309 1.3:-63035775 MS.gene21583:intron
CATGCCTGGTATGGGTGGTA+TGG 0.507454 1.3:-63031832 MS.gene21583:CDS
GGATGCAAATCAGTTGCAGC+TGG 0.520565 1.3:-63034929 MS.gene21583:CDS
CAAGGAACACTGACCTTTGG+CGG 0.520960 1.3:+63032217 None:intergenic
ATTGATTGTTGCTGAGGATG+TGG 0.521979 1.3:-63033720 MS.gene21583:CDS
TTTGCTCAATCACCACGTTA+CGG 0.522654 1.3:+63035499 None:intergenic
TGATGAAGCAAAACGGTACA+TGG 0.524897 1.3:+63036334 None:intergenic
ACTTGATTTATGAAGATTGG+AGG 0.528207 1.3:-63032802 MS.gene21583:intron
CGGTGCCAGTCTAGTAAAGC+AGG 0.529927 1.3:-63035397 MS.gene21583:CDS
GTAGAGGAGGGCATAGTACC+TGG 0.531895 1.3:-63032709 MS.gene21583:intron
CTTGTGCTACAGTTCTTACC+CGG 0.535613 1.3:-63034967 MS.gene21583:CDS
GAAGGTGATTAGGACCGCCT+TGG 0.537650 1.3:-63032028 MS.gene21583:CDS
ACCATCACCAGCCACATCAT+TGG 0.538003 1.3:+63035362 None:intergenic
ACCTTTATTGATTGTTGCTG+AGG 0.539398 1.3:-63033726 MS.gene21583:CDS
ATTCTAAATAAGCTTCGTGC+TGG 0.540824 1.3:-63033674 MS.gene21583:CDS
TGCAACCAAGGCAGCTGTAG+AGG 0.541405 1.3:-63032725 MS.gene21583:CDS
CAGCTTATCACCGAAGAGCT+TGG 0.542247 1.3:-63033376 MS.gene21583:CDS
ATTTAGAATAAGAGTTGCAA+GGG 0.543816 1.3:+63033688 None:intergenic
GCAAAAGCCATGGAGAAAGT+TGG 0.544162 1.3:-63034649 MS.gene21583:CDS
GCATCAAATGCTGGAGTAGA+GGG 0.546345 1.3:-63032296 MS.gene21583:CDS
GTGTTGCATAGATTGGAAGT+AGG 0.549231 1.3:-63035896 MS.gene21583:intron
ACTGTCATTCTTGATGGAGC+TGG 0.549742 1.3:-63033158 MS.gene21583:CDS
TATTTAGAATAAGAGTTGCA+AGG 0.553538 1.3:+63033687 None:intergenic
CATACAATTGCATCAAATGC+TGG 0.554740 1.3:-63032305 MS.gene21583:CDS
TGCATCAAATGCTGGAGTAG+AGG 0.557397 1.3:-63032297 MS.gene21583:CDS
TCCTTCTGTAAATATTGCCC+GGG 0.560443 1.3:+63034949 None:intergenic
CCACCCATACCAGGCATGGC+AGG 0.565885 1.3:+63031837 None:intergenic
GTGGTGATTGAGCAAAGCTT+TGG 0.566454 1.3:-63035492 MS.gene21583:CDS
AGATTGGAAGTAGGGTGGCA+TGG 0.567170 1.3:-63035887 MS.gene21583:CDS
CATCACTTGCCTCCAAAGCT+CGG 0.570155 1.3:-63036316 MS.gene21583:intron
CCTGCCATGCCTGGTATGGG+TGG 0.574287 1.3:-63031837 MS.gene21583:CDS
ACCAATGATGTGGCTGGTGA+TGG 0.577314 1.3:-63035363 MS.gene21583:intron
TGAGTTAATTGCAAAAGCCA+TGG 0.577983 1.3:-63034659 MS.gene21583:CDS
CCATATTTATACCTCGCCTC+AGG 0.579496 1.3:+63034891 None:intergenic
TGGTGATAAGAAATCAATTG+AGG 0.584040 1.3:-63033138 MS.gene21583:CDS
AACCAAGGCAGCTGTAGAGG+AGG 0.586821 1.3:-63032722 MS.gene21583:CDS
CTTGGTTACGATGCCGCCAA+AGG 0.591473 1.3:-63032230 MS.gene21583:intron
ACCCGGGCAATATTTACAGA+AGG 0.591917 1.3:-63034950 MS.gene21583:CDS
AGGCAAGTGATGAAGCAAAA+CGG 0.600903 1.3:+63036327 None:intergenic
TTCTCGTGGATTATAATGAG+GGG 0.603485 1.3:+63033895 None:intergenic
GTATGCGCGATCAAAGCCCC+TGG 0.606996 1.3:-63033542 MS.gene21583:CDS
TGAGGCAGTTAAAGTAACCA+TGG 0.610661 1.3:-63035784 MS.gene21583:CDS
TAGTCCATACCACCCATACC+AGG 0.615608 1.3:+63031828 None:intergenic
GGGTGTTGAAGAACTTGCTG+AGG 0.617007 1.3:-63035802 MS.gene21583:CDS
GGTAAGAACTGTAGCACAAG+TGG 0.617248 1.3:+63034970 None:intergenic
CTACCTGGCTGCGTCAACCA+AGG 0.618790 1.3:+63032011 None:intergenic
GGAGCCAGTGAGGCTGAAGT+TGG 0.619289 1.3:-63032781 MS.gene21583:CDS
ACCAAGGCAGCTGTAGAGGA+GGG 0.620345 1.3:-63032721 MS.gene21583:CDS
TGGCACAATATCTGCTAATG+GGG 0.620505 1.3:-63034695 MS.gene21583:CDS
TTTGATGCAATTGTATGCAC+AGG 0.621753 1.3:+63032311 None:intergenic
GAGGCAGTTAAAGTAACCAT+GGG 0.626223 1.3:-63035783 MS.gene21583:CDS
AATGCTACCAATGATGTGGC+TGG 0.626483 1.3:-63035369 MS.gene21583:CDS
AATTCATCTACAGATTAGGT+CGG 0.630754 1.3:-63032994 MS.gene21583:intron
TTTGTTACCACAGGAACTCG+AGG 0.635926 1.3:-63033920 MS.gene21583:intron
AGAGATCAAATTTGGCGTGG+AGG 0.637900 1.3:-63035844 MS.gene21583:CDS
AGATGCCTTAAATGCAACCA+AGG 0.645500 1.3:-63032737 MS.gene21583:CDS
AGATTGGCCAAGCTTTCTGG+AGG 0.646303 1.3:-63032924 MS.gene21583:CDS
TGCAGCTGGAATGAATGCAA+TGG 0.646496 1.3:-63034915 MS.gene21583:CDS
CATACCACCCATACCAGGCA+TGG 0.647057 1.3:+63031833 None:intergenic
AATACGGAGAAATGTAGCCT+CGG 0.653427 1.3:+63034365 None:intergenic
TTGTGCTACAGTTCTTACCC+GGG 0.659855 1.3:-63034966 MS.gene21583:CDS
TGCATAGATTGGAAGTAGGG+TGG 0.661029 1.3:-63035892 MS.gene21583:intron
CAAAGAGATCAAATTTGGCG+TGG 0.667217 1.3:-63035847 MS.gene21583:CDS
CAAACTTGAAAAGCAGAGCA+CGG 0.669082 1.3:-63034850 MS.gene21583:CDS
AATGCAATGGACCTGAGGCG+AGG 0.674402 1.3:-63034902 MS.gene21583:CDS
GAATGAATGCAATGGACCTG+AGG 0.678991 1.3:-63034907 MS.gene21583:CDS
TGCAAATGCTACCAATGATG+TGG 0.685010 1.3:-63035373 MS.gene21583:CDS
GATCTCGCTGTTCTTACAGG+AGG 0.694554 1.3:-63033488 MS.gene21583:CDS
GAAGATTGGAGGAGCCAGTG+AGG 0.699698 1.3:-63032791 MS.gene21583:intron
TAGCACTTCAGATTATGACA+AGG 0.700368 1.3:-63032961 MS.gene21583:CDS
CCTGGCTGCGTCAACCAAGG+CGG 0.705423 1.3:+63032014 None:intergenic
GAAGGAATGAAGCTTGACCG+AGG 0.708985 1.3:-63034382 MS.gene21583:CDS
GACAAAAGATGGAGTCACTG+TGG 0.727240 1.3:-63035457 MS.gene21583:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAAAACAGATATAA+AGG + chr1.3:63032239-63032258 None:intergenic 10.0%
!! GTAATCATAATGTAATTAAA+GGG + chr1.3:63034050-63034069 None:intergenic 15.0%
!! TAATCATAATGTAATTAAAG+GGG + chr1.3:63034049-63034068 None:intergenic 15.0%
!! TGTAATCATAATGTAATTAA+AGG + chr1.3:63034051-63034070 None:intergenic 15.0%
!! TTAGAAATTAAATCTAAACA+CGG - chr1.3:63032972-63032991 MS.gene21583:CDS 15.0%
!! TTAGAATCATTCAATATAAT+TGG + chr1.3:63032093-63032112 None:intergenic 15.0%
!!! ATTTTTAATTTTGCAATGTT+AGG - chr1.3:63033437-63033456 MS.gene21583:intron 15.0%
!!! TTTTTTGAAATTATTCATCT+GGG - chr1.3:63031940-63031959 MS.gene21583:intron 15.0%
!! ATACATTTATCAGAAATGTT+TGG + chr1.3:63035519-63035538 None:intergenic 20.0%
!! ATGGTAAAATGAAATCTAAT+AGG + chr1.3:63035072-63035091 None:intergenic 20.0%
!! CATCAACAACAATTAATAAT+GGG + chr1.3:63032613-63032632 None:intergenic 20.0%
!! CTAATGAATGGTATAAAATT+TGG - chr1.3:63033157-63033176 MS.gene21583:CDS 20.0%
!! GGATAATTGAAACAAAAAAA+AGG + chr1.3:63031886-63031905 None:intergenic 20.0%
!! GTTGTTAAAATGATTGATAA+TGG - chr1.3:63031965-63031984 MS.gene21583:intron 20.0%
!! TCATCAACAACAATTAATAA+TGG + chr1.3:63032614-63032633 None:intergenic 20.0%
!! TTATTCAATCATATTTCAGA+GGG - chr1.3:63032526-63032545 MS.gene21583:CDS 20.0%
!! TTCAAAAATATAATCAACCA+TGG + chr1.3:63032832-63032851 None:intergenic 20.0%
!!! AATGTAAATTTTTGTGCTTT+TGG - chr1.3:63032112-63032131 MS.gene21583:intron 20.0%
!!! ATCAAATTTTTAGAGCTAAT+AGG - chr1.3:63033367-63033386 MS.gene21583:CDS 20.0%
!!! ATCTCTAAAATATATACCAA+AGG + chr1.3:63032922-63032941 None:intergenic 20.0%
!!! ATTTTATACCATTCATTAGT+CGG + chr1.3:63033156-63033175 None:intergenic 20.0%
!!! CTTTTTTGAAATTATTCATC+TGG - chr1.3:63031939-63031958 MS.gene21583:intron 20.0%
!!! TTAAATTTTCACAGTTGATT+CGG - chr1.3:63032854-63032873 MS.gene21583:intron 20.0%
!!! TTATATGTGTTTTTTTGACT+GGG - chr1.3:63033601-63033620 MS.gene21583:intron 20.0%
!!! TTGTTTTTTTCTCATTACTT+AGG - chr1.3:63034592-63034611 MS.gene21583:intron 20.0%
! AAAAAAGTAAACCTACAGAT+AGG + chr1.3:63034525-63034544 None:intergenic 25.0%
! AAGGATAAAGTCAAGAATAT+CGG - chr1.3:63032739-63032758 MS.gene21583:CDS 25.0%
! AATTATCCAAAACGCTTTAA+AGG - chr1.3:63035633-63035652 MS.gene21583:intron 25.0%
! ATAAGTGGGAAAAAAAGAAA+AGG + chr1.3:63033661-63033680 None:intergenic 25.0%
! ATCTTCATAAATCAAGTTTC+AGG + chr1.3:63035351-63035370 None:intergenic 25.0%
! ATTAGGTGAATATGTTGATA+TGG - chr1.3:63036080-63036099 MS.gene21583:intron 25.0%
! CTTATTCAATCATATTTCAG+AGG - chr1.3:63032525-63032544 MS.gene21583:CDS 25.0%
! GAAAAACTTGGAATGTTAAT+AGG + chr1.3:63035318-63035337 None:intergenic 25.0%
! GAAACTTGATTTATGAAGAT+TGG - chr1.3:63035351-63035370 MS.gene21583:intron 25.0%
! GCAAGAATTATCATTAATCT+TGG - chr1.3:63033578-63033597 MS.gene21583:intron 25.0%
! GGTAAATGTAGTAGAATAAA+AGG - chr1.3:63032458-63032477 MS.gene21583:intron 25.0%
! TATCATGCTAATAATTTACC+AGG + chr1.3:63035468-63035487 None:intergenic 25.0%
! TATGTTGATATGGTTAAATC+TGG - chr1.3:63036090-63036109 MS.gene21583:intron 25.0%
! TGAAAATTCATCTACAGATT+AGG - chr1.3:63035158-63035177 MS.gene21583:intron 25.0%
! TTATGACAAGGAAAAATTAC+AGG - chr1.3:63035207-63035226 MS.gene21583:intron 25.0%
!! AAAGTTGATCTTGAAATGTT+CGG - chr1.3:63034816-63034835 MS.gene21583:intron 25.0%
!! AATAATGCACAGTTGAATTT+TGG - chr1.3:63034884-63034903 MS.gene21583:CDS 25.0%
!! ACCTATCTTTTGATCAAAAT+TGG + chr1.3:63035608-63035627 None:intergenic 25.0%
!! AGGATATAAAATTTTTGCGT+TGG - chr1.3:63036166-63036185 MS.gene21583:intron 25.0%
!! ATTTAGAATAAGAGTTGCAA+GGG + chr1.3:63034471-63034490 None:intergenic 25.0%
!! CAAAAATTTTATATCCTACC+TGG + chr1.3:63036163-63036182 None:intergenic 25.0%
!! TATCTTTTGATCAAAATTGG+CGG + chr1.3:63035605-63035624 None:intergenic 25.0%
!! TATTTAGAATAAGAGTTGCA+AGG + chr1.3:63034472-63034491 None:intergenic 25.0%
!! TTAATTTTGCAATGTTAGGT+TGG - chr1.3:63033441-63033460 MS.gene21583:intron 25.0%
!!! ATAAATGTATGTTTTTGCAC+AGG - chr1.3:63035529-63035548 MS.gene21583:intron 25.0%
!!! ATTACATTTCTCCTGTTTTT+AGG - chr1.3:63032633-63032652 MS.gene21583:intron 25.0%
!!! GTTATATGTGTTTTTTTGAC+TGG - chr1.3:63033600-63033619 MS.gene21583:intron 25.0%
!!! TAGAGATTTGTTTTATTCCT+AGG - chr1.3:63032935-63032954 MS.gene21583:CDS 25.0%
!!! TTAAAGCGTTTTGGATAATT+TGG + chr1.3:63035633-63035652 None:intergenic 25.0%
!!! TTAATTTGTGTTGCATAGAT+TGG - chr1.3:63032253-63032272 MS.gene21583:CDS 25.0%
!!! TTACATTTCTCCTGTTTTTA+GGG - chr1.3:63032634-63032653 MS.gene21583:intron 25.0%
!!! TTCTGGTTTGTTATGAAATA+CGG + chr1.3:63033810-63033829 None:intergenic 25.0%
AAATATATACCAAAGGTCCT+TGG + chr1.3:63032915-63032934 None:intergenic 30.0%
AATTCATCTACAGATTAGGT+CGG - chr1.3:63035162-63035181 MS.gene21583:intron 30.0%
ACTTGATTTATGAAGATTGG+AGG - chr1.3:63035354-63035373 MS.gene21583:intron 30.0%
AGACAAGGAAAAAGAAAACA+AGG + chr1.3:63035960-63035979 None:intergenic 30.0%
ATATCAGAATACGCTAACAA+TGG + chr1.3:63035091-63035110 None:intergenic 30.0%
ATCACAAAGCATACAAAAGT+AGG + chr1.3:63032063-63032082 None:intergenic 30.0%
CAGATTAAACTCTATATTGC+AGG + chr1.3:63035740-63035759 None:intergenic 30.0%
CATTTATCAGAAATGTTTGG+AGG + chr1.3:63035516-63035535 None:intergenic 30.0%
GAATGTTGTACTTTATATGC+AGG - chr1.3:63036193-63036212 MS.gene21583:intron 30.0%
GACAACGATACAGATAAATA+TGG + chr1.3:63034129-63034148 None:intergenic 30.0%
GGAAAAATTACAGGAAAGAT+TGG - chr1.3:63035216-63035235 MS.gene21583:intron 30.0%
GGTGTTAGTTATGAAAAACT+TGG + chr1.3:63035330-63035349 None:intergenic 30.0%
GTTAAGAACATACACATTTC+TGG + chr1.3:63033836-63033855 None:intergenic 30.0%
TAATATATACACCACATCCT+AGG + chr1.3:63032955-63032974 None:intergenic 30.0%
TAATTGAGCATTCATTGAGA+TGG - chr1.3:63032010-63032029 MS.gene21583:intron 30.0%
TATTTATCTGTATCGTTGTC+AGG - chr1.3:63034129-63034148 MS.gene21583:intron 30.0%
TGAATGGTATAAAATTTGGC+AGG - chr1.3:63033161-63033180 MS.gene21583:CDS 30.0%
TGGAATAATTGATCCATTGA+AGG - chr1.3:63036110-63036129 MS.gene21583:intron 30.0%
TGGTGATAAGAAATCAATTG+AGG - chr1.3:63035018-63035037 MS.gene21583:intron 30.0%
TTATCTATCAACGATAGTAG+TGG - chr1.3:63033926-63033945 MS.gene21583:intron 30.0%
! AATCTGTCTTTTAGACAGTA+TGG - chr1.3:63035754-63035773 MS.gene21583:intron 30.0%
! ACTATCGTTGATAGATAACT+AGG + chr1.3:63033924-63033943 None:intergenic 30.0%
! ACTTTTGTATGCTTTGTGAT+TGG - chr1.3:63032063-63032082 MS.gene21583:CDS 30.0%
! ATACCAAAAGTGCACAATAT+CGG + chr1.3:63033012-63033031 None:intergenic 30.0%
! ATCATGTTGCATCTCAATTT+TGG - chr1.3:63033952-63033971 MS.gene21583:intron 30.0%
!! AGTATTAGAGTTAGCTTTGA+AGG - chr1.3:63034314-63034333 MS.gene21583:intron 30.0%
!! GCCAATTTTGATCAAAAGAT+AGG - chr1.3:63035604-63035623 MS.gene21583:intron 30.0%
!! TATAACTTTTGAGCTGTTTC+AGG - chr1.3:63033716-63033735 MS.gene21583:CDS 30.0%
!! TATTTGAGATTTTCTTCTCG+TGG + chr1.3:63034278-63034297 None:intergenic 30.0%
!! TGTTGTTGTTGGTAAACTTT+TGG - chr1.3:63035886-63035905 MS.gene21583:CDS 30.0%
!! TTGTCAACTATTTTTCTTGC+TGG - chr1.3:63036051-63036070 MS.gene21583:intron 30.0%
!! TTTCTTGCTGGTTTGTAATT+AGG - chr1.3:63036063-63036082 MS.gene21583:intron 30.0%
!!! CTTTTTCCTTGTCTTGTTTA+AGG - chr1.3:63035966-63035985 MS.gene21583:intron 30.0%
!!! TTTGTTTTATTCCTAGGATG+TGG - chr1.3:63032941-63032960 MS.gene21583:CDS 30.0%
AAAAAAGCAGCAAGTTAGTC+AGG + chr1.3:63036222-63036241 None:intergenic 35.0%
AAAGAGCAAAACACAATGAC+TGG + chr1.3:63033984-63034003 None:intergenic 35.0%
AAGAATGACAGTGTCATCTT+TGG + chr1.3:63034990-63035009 None:intergenic 35.0%
AATGTTCGGTTCTTGCAAAA+AGG - chr1.3:63034830-63034849 MS.gene21583:CDS 35.0%
ATCCTTCTGTAAATATTGCC+CGG + chr1.3:63033211-63033230 None:intergenic 35.0%
ATTCTAAATAAGCTTCGTGC+TGG - chr1.3:63034482-63034501 MS.gene21583:intron 35.0%
CAAGACATTGCAAAATGAGT+TGG - chr1.3:63033743-63033762 MS.gene21583:intron 35.0%
CATACAATTGCATCAAATGC+TGG - chr1.3:63035851-63035870 MS.gene21583:CDS 35.0%
GAAACTCCTTAAACAAGACA+AGG + chr1.3:63035975-63035994 None:intergenic 35.0%
GAGATATATAATGCTGATGC+TGG - chr1.3:63032480-63032499 MS.gene21583:intron 35.0%
GTGGTAACAAATAGATGTCA+TGG + chr1.3:63034227-63034246 None:intergenic 35.0%
TAATAGGCATATTAGCCACA+AGG - chr1.3:63033383-63033402 MS.gene21583:intron 35.0%
TAGCACTTCAGATTATGACA+AGG - chr1.3:63035195-63035214 MS.gene21583:intron 35.0%
TAGGTAATCACGAATCAACA+TGG + chr1.3:63032044-63032063 None:intergenic 35.0%
TCATGAGTCATGACAATGTA+TGG + chr1.3:63034177-63034196 None:intergenic 35.0%
TCCTCAGCAACAATCAATAA+AGG + chr1.3:63034434-63034453 None:intergenic 35.0%
TGAGTTAATTGCAAAAGCCA+TGG - chr1.3:63033497-63033516 MS.gene21583:CDS 35.0%
TGTTGCATAGATTGGAAGTA+GGG - chr1.3:63032261-63032280 MS.gene21583:CDS 35.0%
TTAATATCTTCCAGTCCTAC+AGG + chr1.3:63032575-63032594 None:intergenic 35.0%
TTGATCCATTGAAGGTGATT+AGG - chr1.3:63036118-63036137 MS.gene21583:intron 35.0%
TTGGCACAATATCTGCTAAT+GGG - chr1.3:63033460-63033479 MS.gene21583:intron 35.0%
TTTCTAATGCTGCTATGTAG+AGG + chr1.3:63033864-63033883 None:intergenic 35.0%
TTTGATGCAATTGTATGCAC+AGG + chr1.3:63035848-63035867 None:intergenic 35.0%
! AAGGTTTGCTTAGTTACCTT+AGG + chr1.3:63032400-63032419 None:intergenic 35.0%
! AATGAGTTGGAAGTTGTTGA+AGG - chr1.3:63033756-63033775 MS.gene21583:intron 35.0%
! ACCTTTATTGATTGTTGCTG+AGG - chr1.3:63034430-63034449 MS.gene21583:intron 35.0%
! AGTCATTGTGTTTTGCTCTT+TGG - chr1.3:63033983-63034002 MS.gene21583:intron 35.0%
! ATCCTTTTACACACTTCAGA+TGG - chr1.3:63031902-63031921 MS.gene21583:CDS 35.0%
! CTTCTCGTGGATTATAATGA+GGG + chr1.3:63034265-63034284 None:intergenic 35.0%
! TCTTCTCGTGGATTATAATG+AGG + chr1.3:63034266-63034285 None:intergenic 35.0%
! TGACATCTATTTGTTACCAC+AGG - chr1.3:63034227-63034246 MS.gene21583:intron 35.0%
! TTCTCGTGGATTATAATGAG+GGG + chr1.3:63034264-63034283 None:intergenic 35.0%
! TTTTGATCAAAATTGGCGGT+TGG + chr1.3:63035601-63035620 None:intergenic 35.0%
!! AATGTATGTTTTTGCACAGG+TGG - chr1.3:63035532-63035551 MS.gene21583:intron 35.0%
!! ATAAAAAGCATCAGCAAGCA+AGG + chr1.3:63035293-63035312 None:intergenic 35.0%
!! ATACACATTTCTGGTTCTTC+TGG + chr1.3:63033827-63033846 None:intergenic 35.0%
!! ATGGTAAGCTGTTTTATCCA+TGG - chr1.3:63032812-63032831 MS.gene21583:intron 35.0%
!! GGAGCATCTTTATCTTCTTT+TGG + chr1.3:63036301-63036320 None:intergenic 35.0%
!! GGTTTGTTTTTCCTATCTGT+AGG - chr1.3:63034511-63034530 MS.gene21583:intron 35.0%
!! GTTTTATTCCTAGGATTCCT+AGG - chr1.3:63033047-63033066 MS.gene21583:intron 35.0%
!!! AACACACCTTTAAAGCGTTT+TGG + chr1.3:63035642-63035661 None:intergenic 35.0%
!!! ACTCCATCTTTTGTCACTTT+AGG + chr1.3:63032694-63032713 None:intergenic 35.0%
!!! CTCCATCTTTTGTCACTTTA+GGG + chr1.3:63032693-63032712 None:intergenic 35.0%
!!! GTTGATTCGGTTTTATTCCA+AGG - chr1.3:63032895-63032914 MS.gene21583:intron 35.0%
!!! GTTGATTCGGTTTTATTCCT+AGG - chr1.3:63032867-63032886 MS.gene21583:intron 35.0%
!!! TCCATCTTTTGTCACTTTAG+GGG + chr1.3:63032692-63032711 None:intergenic 35.0%
!!! TGTTGGTAAACTTTTGGAAC+AGG - chr1.3:63035892-63035911 MS.gene21583:intron 35.0%
AAACAAGGAACACTGACCTT+TGG + chr1.3:63035945-63035964 None:intergenic 40.0%
AAAGCTCGGTAAGTCATCAA+TGG - chr1.3:63031854-63031873 MS.gene21583:CDS 40.0%
AAGATTCATGCCAAGCTCTT+CGG + chr1.3:63034793-63034812 None:intergenic 40.0%
AATACGGAGAAATGTAGCCT+CGG + chr1.3:63033794-63033813 None:intergenic 40.0%
AATTGAGGAAAGATGTGAGC+AGG - chr1.3:63035033-63035052 MS.gene21583:intron 40.0%
ACAAAAGTCGCAACTACGAT+AGG + chr1.3:63034022-63034041 None:intergenic 40.0%
ACGGCAAGATGACAATAAGT+GGG + chr1.3:63033675-63033694 None:intergenic 40.0%
AGATGCCTTAAATGCAACCA+AGG - chr1.3:63035419-63035438 MS.gene21583:CDS 40.0%
AGGCAAGTGATGAAGCAAAA+CGG + chr1.3:63031832-63031851 None:intergenic 40.0%
ATGGAGAAAGTTGGCAAAGA+AGG - chr1.3:63033516-63033535 MS.gene21583:CDS 40.0%
ATTCCACTGCGAATATGTGA+AGG + chr1.3:63032429-63032448 None:intergenic 40.0%
ATTGATTGTTGCTGAGGATG+TGG - chr1.3:63034436-63034455 MS.gene21583:intron 40.0%
ATTGCAGGATTAAGCCTGAA+AGG + chr1.3:63035725-63035744 None:intergenic 40.0%
CAAACTTGAAAAGCAGAGCA+CGG - chr1.3:63033306-63033325 MS.gene21583:intron 40.0%
CAAAGAGATCAAATTTGGCG+TGG - chr1.3:63032309-63032328 MS.gene21583:CDS 40.0%
CACGCCAAATTTGATCTCTT+TGG + chr1.3:63032311-63032330 None:intergenic 40.0%
CGAGACAAAATGCACAACAT+CGG + chr1.3:63033124-63033143 None:intergenic 40.0%
CTGCGAATATGTGAAGGAAA+CGG + chr1.3:63032423-63032442 None:intergenic 40.0%
GAACAGGATAATCCTGATCT+TGG - chr1.3:63035908-63035927 MS.gene21583:intron 40.0%
GAATATGTGAAGGAAACGGA+AGG + chr1.3:63032419-63032438 None:intergenic 40.0%
GAGGCAGTTAAAGTAACCAT+GGG - chr1.3:63032373-63032392 MS.gene21583:intron 40.0%
GATGACACTGTCATTCTTGA+TGG - chr1.3:63034992-63035011 MS.gene21583:intron 40.0%
GCTAATGGGGATAGAGAAAT+TGG - chr1.3:63033474-63033493 MS.gene21583:intron 40.0%
GCTGCCAAAGAGATCAAATT+TGG - chr1.3:63032304-63032323 MS.gene21583:CDS 40.0%
GTGTTGCATAGATTGGAAGT+AGG - chr1.3:63032260-63032279 MS.gene21583:CDS 40.0%
GTTGGCACAATATCTGCTAA+TGG - chr1.3:63033459-63033478 MS.gene21583:intron 40.0%
TAAAGTAACCATGGGTCCTA+AGG - chr1.3:63032381-63032400 MS.gene21583:intron 40.0%
TAAGCTTCGTGCTGGAATTA+AGG - chr1.3:63034490-63034509 MS.gene21583:intron 40.0%
TCATGACAATGTATGGAGCA+AGG + chr1.3:63034170-63034189 None:intergenic 40.0%
TCCTTCTGTAAATATTGCCC+GGG + chr1.3:63033210-63033229 None:intergenic 40.0%
TGAGGCAGTTAAAGTAACCA+TGG - chr1.3:63032372-63032391 MS.gene21583:intron 40.0%
TGCAAATGCTACCAATGATG+TGG - chr1.3:63032783-63032802 MS.gene21583:CDS 40.0%
TGGCACAATATCTGCTAATG+GGG - chr1.3:63033461-63033480 MS.gene21583:intron 40.0%
TGTTGTGACCGACTAATGAA+TGG - chr1.3:63033145-63033164 MS.gene21583:CDS 40.0%
TTCTTTGCCAACTTTCTCCA+TGG + chr1.3:63033517-63033536 None:intergenic 40.0%
TTTCCTTCACATATTCGCAG+TGG - chr1.3:63032423-63032442 MS.gene21583:intron 40.0%
TTTGCTCAATCACCACGTTA+CGG + chr1.3:63032660-63032679 None:intergenic 40.0%
TTTGGGGAAAACAGGAAATC+TGG - chr1.3:63034638-63034657 MS.gene21583:CDS 40.0%
! AGCCATCTGAAGTGTGTAAA+AGG + chr1.3:63031907-63031926 None:intergenic 40.0%
! ATGCCGATATTGTGCACTTT+TGG - chr1.3:63033006-63033025 MS.gene21583:intron 40.0%
! ATTGATGACTTACCGAGCTT+TGG + chr1.3:63031855-63031874 None:intergenic 40.0%
! CACTTCTGAAGAAATTGCTC+AGG - chr1.3:63033337-63033356 MS.gene21583:CDS 40.0%
! CTTTTGGATGCAGAATTGCT+AGG - chr1.3:63032128-63032147 MS.gene21583:intron 40.0%
!! ACTTTTGAGCTGTTTCAGGA+TGG - chr1.3:63033720-63033739 MS.gene21583:CDS 40.0%
!! GGCTAAGAGCATTGAATTCA+AGG - chr1.3:63032720-63032739 MS.gene21583:CDS 40.0%
!!! GGTTTTATTCCAAGGACCTT+TGG - chr1.3:63032903-63032922 MS.gene21583:intron 40.0%
AAACAGGAAATCTGGTCTCC+AGG - chr1.3:63034646-63034665 MS.gene21583:CDS 45.0%
AAGCCTGAAAGGAATTGACG+AGG + chr1.3:63035714-63035733 None:intergenic 45.0%
AATGCTACCAATGATGTGGC+TGG - chr1.3:63032787-63032806 MS.gene21583:CDS 45.0%
ACCCGGGCAATATTTACAGA+AGG - chr1.3:63033206-63033225 MS.gene21583:intron 45.0%
ACTGTCATTCTTGATGGAGC+TGG - chr1.3:63034998-63035017 MS.gene21583:intron 45.0%
AGAGATCAAATTTGGCGTGG+AGG - chr1.3:63032312-63032331 MS.gene21583:CDS 45.0%
AGCTGCCTTGGTTGCATTTA+AGG + chr1.3:63035427-63035446 None:intergenic 45.0%
ATATTAGCCACAAGGACTGC+AGG - chr1.3:63033391-63033410 MS.gene21583:intron 45.0%
CACGGCAAGATGACAATAAG+TGG + chr1.3:63033676-63033695 None:intergenic 45.0%
CCAAAACCGAGCAATCATTG+TGG + chr1.3:63034914-63034933 None:intergenic 45.0%
CCATATTTATACCTCGCCTC+AGG + chr1.3:63033268-63033287 None:intergenic 45.0%
CCTGAGGCGAGGTATAAATA+TGG - chr1.3:63033265-63033284 MS.gene21583:intron 45.0%
CGAGGAAGGAGAATGGAATA+TGG + chr1.3:63035696-63035715 None:intergenic 45.0%
CTGAAAGGAATTGACGAGGA+AGG + chr1.3:63035710-63035729 None:intergenic 45.0%
CTTAGTTACCTTAGGACCCA+TGG + chr1.3:63032392-63032411 None:intergenic 45.0%
CTTCCTCGTCAATTCCTTTC+AGG - chr1.3:63035708-63035727 MS.gene21583:intron 45.0%
CTTGTGCTACAGTTCTTACC+CGG - chr1.3:63033189-63033208 MS.gene21583:intron 45.0%
GAATGAATGCAATGGACCTG+AGG - chr1.3:63033249-63033268 MS.gene21583:intron 45.0%
GAATTGACGAGGAAGGAGAA+TGG + chr1.3:63035703-63035722 None:intergenic 45.0%
GACAAAAGATGGAGTCACTG+TGG - chr1.3:63032699-63032718 MS.gene21583:intron 45.0%
GCAAAAGCCATGGAGAAAGT+TGG - chr1.3:63033507-63033526 MS.gene21583:CDS 45.0%
GCATCAAATGCTGGAGTAGA+GGG - chr1.3:63035860-63035879 MS.gene21583:CDS 45.0%
GCCCCTAAAGTGACAAAAGA+TGG - chr1.3:63032688-63032707 MS.gene21583:intron 45.0%
GCTCGTGCTTTGATGCTTAA+GGG - chr1.3:63032334-63032353 MS.gene21583:intron 45.0%
GGTAAGAACTGTAGCACAAG+TGG + chr1.3:63033189-63033208 None:intergenic 45.0%
GGTAGTCCACAATGATTGCT+CGG - chr1.3:63034905-63034924 MS.gene21583:CDS 45.0%
GTGGTGATTGAGCAAAGCTT+TGG - chr1.3:63032664-63032683 MS.gene21583:intron 45.0%
TCGCAGTGGAATGATGTCTT+TGG - chr1.3:63032437-63032456 MS.gene21583:intron 45.0%
TGCAACCTGCTTTACTAGAC+TGG + chr1.3:63032767-63032786 None:intergenic 45.0%
TGCAGCTGGAATGAATGCAA+TGG - chr1.3:63033241-63033260 MS.gene21583:intron 45.0%
TGCATAGATTGGAAGTAGGG+TGG - chr1.3:63032264-63032283 MS.gene21583:CDS 45.0%
TGCATCAAATGCTGGAGTAG+AGG - chr1.3:63035859-63035878 MS.gene21583:CDS 45.0%
TTCCTAGGACGTGGTTGATT+CGG - chr1.3:63032882-63032901 MS.gene21583:intron 45.0%
TTCCTAGGATTCCTAGGATG+TGG - chr1.3:63033053-63033072 MS.gene21583:intron 45.0%
TTGTGCTACAGTTCTTACCC+GGG - chr1.3:63033190-63033209 MS.gene21583:intron 45.0%
TTTGTTACCACAGGAACTCG+AGG - chr1.3:63034236-63034255 MS.gene21583:intron 45.0%
! AGAGGGAAGAACACTAGCTT+TGG - chr1.3:63032543-63032562 MS.gene21583:CDS 45.0%
! CCACAATGATTGCTCGGTTT+TGG - chr1.3:63034911-63034930 MS.gene21583:CDS 45.0%
! GAAAGATTGGCCAAGCTTTC+TGG - chr1.3:63035229-63035248 MS.gene21583:intron 45.0%
! TCCTGTTTTCCCCAAAACCA+GGG + chr1.3:63034634-63034653 None:intergenic 45.0%
! TTCCTGTTTTCCCCAAAACC+AGG + chr1.3:63034635-63034654 None:intergenic 45.0%
!! GGCTGAAGTTGGTGAGAAAA+AGG - chr1.3:63035386-63035405 MS.gene21583:CDS 45.0%
!! GTATGTTTTTGCACAGGTGG+TGG - chr1.3:63035535-63035554 MS.gene21583:intron 45.0%
!! TAGCTTTGGTTGTAGCCTGT+AGG - chr1.3:63032557-63032576 MS.gene21583:CDS 45.0%
!!! TCGGTTTTATTCCTAGGACG+TGG - chr1.3:63032873-63032892 MS.gene21583:intron 45.0%
AACCGAATCAACCACGTCCT+AGG + chr1.3:63032887-63032906 None:intergenic 50.0%
ACCAATGATGTGGCTGGTGA+TGG - chr1.3:63032793-63032812 MS.gene21583:intron 50.0%
ACCATCACCAGCCACATCAT+TGG + chr1.3:63032797-63032816 None:intergenic 50.0%
AGATTGGAAGTAGGGTGGCA+TGG - chr1.3:63032269-63032288 MS.gene21583:CDS 50.0%
CAAGGAACACTGACCTTTGG+CGG + chr1.3:63035942-63035961 None:intergenic 50.0%
CACCACATCCTAGGAATCCT+AGG + chr1.3:63033058-63033077 None:intergenic 50.0%
CACGTTACGGCCCTAAAAAC+AGG + chr1.3:63032647-63032666 None:intergenic 50.0%
CAGCTTATCACCGAAGAGCT+TGG - chr1.3:63034780-63034799 MS.gene21583:intron 50.0%
CAGGATCTCGCTGTTCTTAC+AGG - chr1.3:63034665-63034684 MS.gene21583:CDS 50.0%
CATCACTTGCCTCCAAAGCT+CGG - chr1.3:63031840-63031859 MS.gene21583:CDS 50.0%
CCAGCATACCACAAAGTGCA+CGG + chr1.3:63033694-63033713 None:intergenic 50.0%
CGTGCACTTTGTGGTATGCT+GGG - chr1.3:63033692-63033711 MS.gene21583:CDS 50.0%
CTGTAAGAACAGCGAGATCC+TGG + chr1.3:63034667-63034686 None:intergenic 50.0%
GAAGGAATGAAGCTTGACCG+AGG - chr1.3:63033774-63033793 MS.gene21583:intron 50.0%
GATCTCGCTGTTCTTACAGG+AGG - chr1.3:63034668-63034687 MS.gene21583:CDS 50.0%
GCGGTCCTAATCACCTTCAA+TGG + chr1.3:63036126-63036145 None:intergenic 50.0%
GGATGCAAATCAGTTGCAGC+TGG - chr1.3:63033227-63033246 MS.gene21583:intron 50.0%
GGCTCGTGCTTTGATGCTTA+AGG - chr1.3:63032333-63032352 MS.gene21583:intron 50.0%
TAGTCCATACCACCCATACC+AGG + chr1.3:63036331-63036350 None:intergenic 50.0%
TCATCTTGCCGTGCACTTTG+TGG - chr1.3:63033683-63033702 MS.gene21583:CDS 50.0%
TGCAACTCCTCCAGAAAGCT+TGG + chr1.3:63035242-63035261 None:intergenic 50.0%
TGCTAGGAGCAACGCTAATC+AGG - chr1.3:63032144-63032163 MS.gene21583:intron 50.0%
TGGAGGAGTTGCAGTGCTTA+AGG - chr1.3:63035249-63035268 MS.gene21583:intron 50.0%
TTGGTTGTAGCCTGTAGGAC+TGG - chr1.3:63032562-63032581 MS.gene21583:CDS 50.0%
! AGATTGGCCAAGCTTTCTGG+AGG - chr1.3:63035232-63035251 MS.gene21583:intron 50.0%
! CCTGTTTTCCCCAAAACCAG+GGG + chr1.3:63034633-63034652 None:intergenic 50.0%
! GATGACTTACCGAGCTTTGG+AGG + chr1.3:63031852-63031871 None:intergenic 50.0%
!! CGATCAAAGCCCCTGGTTTT+GGG - chr1.3:63034621-63034640 MS.gene21583:intron 50.0%
!! GGGTGTTGAAGAACTTGCTG+AGG - chr1.3:63032354-63032373 MS.gene21583:intron 50.0%
!! GTAGAGGGTGCTGTTGTTGT+TGG - chr1.3:63035875-63035894 MS.gene21583:CDS 50.0%
!!! CTGTTTTTAGGGCCGTAACG+TGG - chr1.3:63032645-63032664 MS.gene21583:intron 50.0%
!!! GATCAAAGCCCCTGGTTTTG+GGG - chr1.3:63034622-63034641 MS.gene21583:intron 50.0%
AAAGATGCTCCTGCCATGCC+TGG - chr1.3:63036310-63036329 MS.gene21583:intron 55.0%
AACCAAGGCAGCTGTAGAGG+AGG - chr1.3:63035434-63035453 MS.gene21583:CDS 55.0%
AATGCAATGGACCTGAGGCG+AGG - chr1.3:63033254-63033273 MS.gene21583:intron 55.0%
ACCAAGGCAGCTGTAGAGGA+GGG - chr1.3:63035435-63035454 MS.gene21583:CDS 55.0%
ATGGAGCAAGGACACCGACA+GGG + chr1.3:63034158-63034177 None:intergenic 55.0%
CATACCACCCATACCAGGCA+TGG + chr1.3:63036326-63036345 None:intergenic 55.0%
CATGCCTGGTATGGGTGGTA+TGG - chr1.3:63036324-63036343 MS.gene21583:CDS 55.0%
CCGTGCACTTTGTGGTATGC+TGG - chr1.3:63033691-63033710 MS.gene21583:CDS 55.0%
CTACTGTCCTGCAGTCCTTG+TGG + chr1.3:63033401-63033420 None:intergenic 55.0%
CTCACCAACTTCAGCCTCAC+TGG + chr1.3:63035382-63035401 None:intergenic 55.0%
CTTGGTTACGATGCCGCCAA+AGG - chr1.3:63035926-63035945 MS.gene21583:intron 55.0%
GAAGATTGGAGGAGCCAGTG+AGG - chr1.3:63035365-63035384 MS.gene21583:CDS 55.0%
GAAGGTGATTAGGACCGCCT+TGG - chr1.3:63036128-63036147 MS.gene21583:intron 55.0%
GCGGCATCGTAACCAAGATC+AGG + chr1.3:63035923-63035942 None:intergenic 55.0%
TATGGAGCAAGGACACCGAC+AGG + chr1.3:63034159-63034178 None:intergenic 55.0%
TCGTTGTCAGGTGTCCCTGT+CGG - chr1.3:63034141-63034160 MS.gene21583:intron 55.0%
TGCAACCAAGGCAGCTGTAG+AGG - chr1.3:63035431-63035450 MS.gene21583:CDS 55.0%
! CGGTGCCAGTCTAGTAAAGC+AGG - chr1.3:63032759-63032778 MS.gene21583:CDS 55.0%
! GCGATCAAAGCCCCTGGTTT+TGG - chr1.3:63034620-63034639 MS.gene21583:intron 55.0%
! GTAGAGGAGGGCATAGTACC+TGG - chr1.3:63035447-63035466 MS.gene21583:CDS 55.0%
!!! CCCCTGGTTTTGGGGAAAAC+AGG - chr1.3:63034630-63034649 MS.gene21583:CDS 55.0%
AGGGGATCCTCGAGTTCCTG+TGG + chr1.3:63034246-63034265 None:intergenic 60.0%
CTACCTGGCTGCGTCAACCA+AGG + chr1.3:63036148-63036167 None:intergenic 60.0%
CTTGGTTGACGCAGCCAGGT+AGG - chr1.3:63036146-63036165 MS.gene21583:intron 60.0%
GCTCCTGCCATGCCTGGTAT+GGG - chr1.3:63036316-63036335 MS.gene21583:intron 60.0%
GGAGCCAGTGAGGCTGAAGT+TGG - chr1.3:63035375-63035394 MS.gene21583:CDS 60.0%
GTATGCGCGATCAAAGCCCC+TGG - chr1.3:63034614-63034633 MS.gene21583:intron 60.0%
TGCTCCTGCCATGCCTGGTA+TGG - chr1.3:63036315-63036334 MS.gene21583:intron 60.0%
CCACCCATACCAGGCATGGC+AGG + chr1.3:63036322-63036341 None:intergenic 65.0%
CCTGCCATGCCTGGTATGGG+TGG - chr1.3:63036319-63036338 MS.gene21583:CDS 65.0%
CCTGGCTGCGTCAACCAAGG+CGG + chr1.3:63036145-63036164 None:intergenic 65.0%
GCCCTCCTCTACAGCTGCCT+TGG + chr1.3:63035439-63035458 None:intergenic 65.0%
CCGCCTTGGTTGACGCAGCC+AGG - chr1.3:63036142-63036161 MS.gene21583:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 63031824 63036354 63031824 ID=MS.gene21583
chr1.3 mRNA 63031824 63036354 63031824 ID=MS.gene21583.t1;Parent=MS.gene21583
chr1.3 exon 63036317 63036354 63036317 ID=MS.gene21583.t1.exon1;Parent=MS.gene21583.t1
chr1.3 CDS 63036317 63036354 63036317 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63036013 63036037 63036013 ID=MS.gene21583.t1.exon2;Parent=MS.gene21583.t1
chr1.3 CDS 63036013 63036037 63036013 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63035776 63035907 63035776 ID=MS.gene21583.t1.exon3;Parent=MS.gene21583.t1
chr1.3 CDS 63035776 63035907 63035776 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63035364 63035523 63035364 ID=MS.gene21583.t1.exon4;Parent=MS.gene21583.t1
chr1.3 CDS 63035364 63035523 63035364 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63034820 63034995 63034820 ID=MS.gene21583.t1.exon5;Parent=MS.gene21583.t1
chr1.3 CDS 63034820 63034995 63034820 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63034624 63034719 63034624 ID=MS.gene21583.t1.exon6;Parent=MS.gene21583.t1
chr1.3 CDS 63034624 63034719 63034624 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63034336 63034440 63034336 ID=MS.gene21583.t1.exon7;Parent=MS.gene21583.t1
chr1.3 CDS 63034336 63034440 63034336 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63033843 63033929 63033843 ID=MS.gene21583.t1.exon8;Parent=MS.gene21583.t1
chr1.3 CDS 63033843 63033929 63033843 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63033667 63033756 63033667 ID=MS.gene21583.t1.exon9;Parent=MS.gene21583.t1
chr1.3 CDS 63033667 63033756 63033667 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63033484 63033564 63033484 ID=MS.gene21583.t1.exon10;Parent=MS.gene21583.t1
chr1.3 CDS 63033484 63033564 63033484 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63033327 63033395 63033327 ID=MS.gene21583.t1.exon11;Parent=MS.gene21583.t1
chr1.3 CDS 63033327 63033395 63033327 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63033124 63033201 63033124 ID=MS.gene21583.t1.exon12;Parent=MS.gene21583.t1
chr1.3 CDS 63033124 63033201 63033124 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63032908 63033003 63032908 ID=MS.gene21583.t1.exon13;Parent=MS.gene21583.t1
chr1.3 CDS 63032908 63033003 63032908 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63032710 63032809 63032710 ID=MS.gene21583.t1.exon14;Parent=MS.gene21583.t1
chr1.3 CDS 63032710 63032809 63032710 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63032524 63032627 63032524 ID=MS.gene21583.t1.exon15;Parent=MS.gene21583.t1
chr1.3 CDS 63032524 63032627 63032524 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63032231 63032336 63032231 ID=MS.gene21583.t1.exon16;Parent=MS.gene21583.t1
chr1.3 CDS 63032231 63032336 63032231 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63032015 63032093 63032015 ID=MS.gene21583.t1.exon17;Parent=MS.gene21583.t1
chr1.3 CDS 63032015 63032093 63032015 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
chr1.3 exon 63031824 63031926 63031824 ID=MS.gene21583.t1.exon18;Parent=MS.gene21583.t1
chr1.3 CDS 63031824 63031926 63031824 ID=cds.MS.gene21583.t1;Parent=MS.gene21583.t1
Gene Sequence

>MS.gene21583

ATGTACCGTTTTGCTTCATCACTTGCCTCCAAAGCTCGGTAAGTCATCAATGGCAGTGTCCTTTTTTTTGTTTCAATTATCCTTTTACACACTTCAGATGGCTTCAATTTTTAATCTTTTTTGAAATTATTCATCTGGGTCGTTGTTAAAATGATTGATAATGGATAAAAAAATTAACTTTTTCAATAATTGAGCATTCATTGAGATGGATCTAGAACCATGTTGATTCGTGATTACCTACTTTTGTATGCTTTGTGATTGGATATCCAATTATATTGAATGATTCTAAATGTAAATTTTTGTGCTTTTGGATGCAGAATTGCTAGGAGCAACGCTAATCAGGTGAATCACTGTTTGATTACATAGAACATTTTTTTGTTGAATAAGTTTTGAGATTTGTAACTCATTTAATCCTTTATATCTGTTTTTTTAATTTGTGTTGCATAGATTGGAAGTAGGGTGGCATGGAGCAGAAATTATGCTGCCAAAGAGATCAAATTTGGCGTGGAGGCTCGTGCTTTGATGCTTAAGGGTGTTGAAGAACTTGCTGAGGCAGTTAAAGTAACCATGGGTCCTAAGGTAACTAAGCAAACCTTCCGTTTCCTTCACATATTCGCAGTGGAATGATGTCTTTGGTAAATGTAGTAGAATAAAAGGAGATATATAATGCTGATGCTGGATTTTAATTCATTCATCACACACTTATTCAATCATATTTCAGAGGGAAGAACACTAGCTTTGGTTGTAGCCTGTAGGACTGGAAGATATTAAATCATCAATTATAGTCCCATTATTAATTGTTGTTGATGATTACATTTCTCCTGTTTTTAGGGCCGTAACGTGGTGATTGAGCAAAGCTTTGGTGCCCCTAAAGTGACAAAAGATGGAGTCACTGTGGCTAAGAGCATTGAATTCAAGGATAAAGTCAAGAATATCGGTGCCAGTCTAGTAAAGCAGGTTGCAAATGCTACCAATGATGTGGCTGGTGATGGTAAGCTGTTTTATCCATGGTTGATTATATTTTTGAAATTTAAATTTTCACAGTTGATTCGGTTTTATTCCTAGGACGTGGTTGATTCGGTTTTATTCCAAGGACCTTTGGTATATATTTTAGAGATTTGTTTTATTCCTAGGATGTGGTGTATATATTAGAAATTAAATCTAAACACGGTCACATTTTACATGCCGATATTGTGCACTTTTGGTATATATTTTAGAGATTTGTTTTATTCCTAGGATTCCTAGGATGTGGTGTATATATTAGAAATTAAATCTAAACACGGTCACATTTTACATGCCGATGTTGTGCATTTTGTCTCGTTGTTGTGACCGACTAATGAATGGTATAAAATTTGGCAGGAACCACTTGTGCTACAGTTCTTACCCGGGCAATATTTACAGAAGGATGCAAATCAGTTGCAGCTGGAATGAATGCAATGGACCTGAGGCGAGGTATAAATATGGCTGTTGATTCTGTTGTGACAAACTTGAAAAGCAGAGCACGGATGATCAGCACTTCTGAAGAAATTGCTCAGGTTTGTGTATCAAATTTTTAGAGCTAATAGGCATATTAGCCACAAGGACTGCAGGACAGTAGTTTATCTGAGTTTTGTATTTTTAATTTTGCAATGTTAGGTTGGCACAATATCTGCTAATGGGGATAGAGAAATTGGTGAGTTAATTGCAAAAGCCATGGAGAAAGTTGGCAAAGAAGGTGTAATCACAATTGCTGTAAGTTTAAATATGCTCATCTTGCAAGAATTATCATTAATCTTGGTTATATGTGTTTTTTTGACTGGGAACATGCTGTTATTCATGCAATGTTTTTATTGTGCCTTTTCTTTTTTTCCCACTTATTGTCATCTTGCCGTGCACTTTGTGGTATGCTGGGTTATAACTTTTGAGCTGTTTCAGGATGGCAAGACATTGCAAAATGAGTTGGAAGTTGTTGAAGGAATGAAGCTTGACCGAGGCTACATTTCTCCGTATTTCATAACAAACCAGAAGAACCAGAAATGTGTATGTTCTTAACTGATGCCTCTACATAGCAGCATTAGAAATATCTGTACATAATACTCTCTAACAAGCTTGTTAGCACCTAGTTATCTATCAACGATAGTAGTGGAGCATCATGTTGCATCTCAATTTTGGCATTCTCCAGTCATTGTGTTTTGCTCTTTGGTTGCAATTGTATACCTATCGTAGTTGCGACTTTTGTTTTGCCCCTTTAATTACATTATGATTACAAACTTTTACGACATTATAAATTACGAAATGCATAGCTAAAATTTCAATACTGTTGCCATATTTATCTGTATCGTTGTCAGGTGTCCCTGTCGGTGTCCTTGCTCCATACATTGTCATGACTCATGAGTCTGTATGTTTGTTAATCATAACTAACCATGACATCTATTTGTTACCACAGGAACTCGAGGATCCCCTCATTATAATCCACGAGAAGAAAATCTCAAATATAAATTCTATAGTTAAAGTATTAGAGTTAGCTTTGAAGGTGAGTAGTGCTATTTGCATCACTTTGCATTGAATTGTAAAATATTGATATTGATATTTTATTAACTTAAACTTTGTCATCAACAGAAACAAAGACCTTTATTGATTGTTGCTGAGGATGTGGAAAGTGATGCCCTTGCAACTCTTATTCTAAATAAGCTTCGTGCTGGAATTAAGGTTTGTTTTTCCTATCTGTAGGTTTACTTTTTTATTCTTAGATTCTTAAAATCTTTGATTTGTAGTTTTTCTTATTTGATTTGTTTTTTTCTCATTACTTAGGTATGCGCGATCAAAGCCCCTGGTTTTGGGGAAAACAGGAAATCTGGTCTCCAGGATCTCGCTGTTCTTACAGGAGGTCAAGTAAGTTATCTTTTTTACAAGAAAATATTAATATATTTTAGTCACATCTTATAAACATGTATGTGATGCGTTTTATATATGCATACAGCTTATCACCGAAGAGCTTGGCATGAATCTTGAAAAAGTTGATCTTGAAATGTTCGGTTCTTGCAAAAAGGTACTAGTGTAGCTTAATTGATGTAGCATTTTAATAATGCACAGTTGAATTTTGGTAGTCCACAATGATTGCTCGGTTTTGGTAAAAGATGCAAATCTACTGAACTAATTTTCTTAATGTTTTAGATTACAATTTCCAAAGATGACACTGTCATTCTTGATGGAGCTGGTGATAAGAAATCAATTGAGGAAAGATGTGAGCAGGTTTGTTCAAATCTCCTATTAGATTTCATTTTACCATTGTTAGCGTATTCTGATATCATATAGAGATATGTTTGATTGTTCTTTGATAACTTGTTTTCTGATGTGAAAATTCATCTACAGATTAGGTCGGCAATCGAAAATAGCACTTCAGATTATGACAAGGAAAAATTACAGGAAAGATTGGCCAAGCTTTCTGGAGGAGTTGCAGTGCTTAAGGTATGCTTAATTATGTTGACCTTGCTTGCTGATGCTTTTTATTACCTATTAACATTCCAAGTTTTTCATAACTAACACCTGAAACTTGATTTATGAAGATTGGAGGAGCCAGTGAGGCTGAAGTTGGTGAGAAAAAGGATAGAGTAACAGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCTGGTAAATTATTAGCATGATATTTGTATGCTTAATTAATTCTATGTCCTCCAAACATTTCTGATAAATGTATGTTTTTGCACAGGTGGTGGTGTTGCTCTTCTTTATGCATCAAATGAGTTAAGTAAGCTTCCAACCGCCAATTTTGATCAAAAGATAGGTGTCCAAATTATCCAAAACGCTTTAAAGGTGTGTTTTGTGTTCTGACTGATTTTTTATTTAGACGTCCATATTCCATTCTCCTTCCTCGTCAATTCCTTTCAGGCTTAATCCTGCAATATAGAGTTTAATCTGTCTTTTAGACAGTATGGTTTTAACTTCAATTTCAATCTCAGTTTCTCACTCTTTTACTACTTGTTTTGACAAAAAAATGCAGACACCTGTGCATACAATTGCATCAAATGCTGGAGTAGAGGGTGCTGTTGTTGTTGGTAAACTTTTGGAACAGGATAATCCTGATCTTGGTTACGATGCCGCCAAAGGTCAGTGTTCCTTGTTTTCTTTTTCCTTGTCTTGTTTAAGGAGTTTCTTTCGTTTACATCATCATCATCATCATCATCATCATCATTATTATTATTGATTCGTTTGTCAACTATTTTTCTTGCTGGTTTGTAATTAGGTGAATATGTTGATATGGTTAAATCTGGAATAATTGATCCATTGAAGGTGATTAGGACCGCCTTGGTTGACGCAGCCAGGTAGGATATAAAATTTTTGCGTTGGATATGAATGTTGTACTTTATATGCAGGTAGCCTGACTAACTTGCTGCTTTTTTTTTTCTGCAGTGTGTCATCTTTGATGACAACAACTGAAGCTGTTGTTTCTGAACTACCAAAAGAAGATAAAGATGCTCCTGCCATGCCTGGTATGGGTGGTATGGACTATTAG
Protein sequence

>MS.gene21583.t1

MYRFASSLASKARIARSNANQIGSRVAWSRNYAAKEIKFGVEARALMLKGVEELAEAVKVTMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGINMAVDSVVTNLKSRARMISTSEEIAQVGTISANGDREIGELIAKAMEKVGKEGVITIADGKTLQNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLIIIHEKKISNINSIVKVLELALKKQRPLLIVAEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKSGLQDLAVLTGGQLITEELGMNLEKVDLEMFGSCKKITISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASNELSKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAVVSELPKEDKDAPAMPGMGGMDY