Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23508.t1 | XP_013449859.1 | 96.1 | 1012 | 32 | 2 | 1 | 1011 | 1 | 1006 | 0.00E+00 | 1929.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23508.t1 | Q9ZP54 | 68.9 | 1016 | 278 | 10 | 1 | 1011 | 1 | 983 | 0.0e+00 | 1343.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23508.t1 | A0A072U2F3 | 96.1 | 1012 | 32 | 2 | 1 | 1011 | 1 | 1006 | 0.0e+00 | 1929.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057669 | MS.gene23508 | 0.800232 | 1.59E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene23508 | MS.gene34372 | PPI |
MS.gene071364 | MS.gene23508 | PPI |
MS.gene04079 | MS.gene23508 | PPI |
MS.gene070946 | MS.gene23508 | PPI |
MS.gene23508 | MS.gene041066 | PPI |
MS.gene043818 | MS.gene23508 | PPI |
MS.gene024860 | MS.gene23508 | PPI |
MS.gene23508 | MS.gene010334 | PPI |
MS.gene08109 | MS.gene23508 | PPI |
MS.gene77163 | MS.gene23508 | PPI |
MS.gene95803 | MS.gene23508 | PPI |
MS.gene23508 | MS.gene067030 | PPI |
MS.gene49473 | MS.gene23508 | PPI |
MS.gene21834 | MS.gene23508 | PPI |
MS.gene23508 | MS.gene015168 | PPI |
MS.gene77160 | MS.gene23508 | PPI |
MS.gene045239 | MS.gene23508 | PPI |
MS.gene001031 | MS.gene23508 | PPI |
MS.gene04418 | MS.gene23508 | PPI |
MS.gene23508 | MS.gene75579 | PPI |
MS.gene78972 | MS.gene23508 | PPI |
MS.gene81099 | MS.gene23508 | PPI |
MS.gene071366 | MS.gene23508 | PPI |
MS.gene23508 | MS.gene043821 | PPI |
MS.gene05640 | MS.gene23508 | PPI |
MS.gene047613 | MS.gene23508 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23508.t1 | MTR_7g096520 | 97.530 | 1012 | 18 | 2 | 1 | 1011 | 1 | 1006 | 0.0 | 2046 |
MS.gene23508.t1 | MTR_1g088375 | 39.175 | 485 | 264 | 11 | 542 | 1007 | 127 | 599 | 9.56e-110 | 354 |
MS.gene23508.t1 | MTR_4g053530 | 31.070 | 766 | 450 | 19 | 292 | 1010 | 72 | 806 | 1.50e-109 | 359 |
MS.gene23508.t1 | MTR_1g088400 | 42.188 | 256 | 139 | 4 | 727 | 974 | 22 | 276 | 2.27e-61 | 211 |
MS.gene23508.t1 | MTR_1g088400 | 45.575 | 226 | 120 | 3 | 751 | 974 | 5 | 229 | 3.66e-61 | 209 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23508.t1 | AT2G31320 | 68.209 | 1016 | 285 | 10 | 1 | 1011 | 1 | 983 | 0.0 | 1396 |
MS.gene23508.t1 | AT4G02390 | 39.754 | 488 | 264 | 10 | 542 | 1010 | 89 | 565 | 3.69e-107 | 345 |
MS.gene23508.t1 | AT4G02390 | 39.754 | 488 | 264 | 10 | 542 | 1010 | 158 | 634 | 1.15e-106 | 346 |
MS.gene23508.t1 | AT4G02390 | 39.754 | 488 | 264 | 10 | 542 | 1010 | 160 | 636 | 1.23e-106 | 346 |
MS.gene23508.t1 | AT5G22470 | 30.303 | 825 | 479 | 22 | 234 | 1010 | 29 | 805 | 1.06e-100 | 335 |
MS.gene23508.t1 | AT3G14890 | 28.782 | 271 | 176 | 7 | 9 | 266 | 49 | 315 | 7.22e-12 | 70.1 |
MS.gene23508.t1 | AT3G14890 | 31.658 | 199 | 122 | 5 | 9 | 197 | 49 | 243 | 9.27e-11 | 66.6 |
Find 254 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATTCATCCACATATTATT+AGG | 0.105501 | 7.3:-14711972 | MS.gene23508:CDS |
GGGCATGAGGCCATCGAATT+TGG | 0.181131 | 7.3:+14717331 | None:intergenic |
CGACTATTCTTTGAGAAAAC+TGG | 0.242070 | 7.3:-14712668 | MS.gene23508:CDS |
TAGCCAGTTGCTGGGGCTTC+AGG | 0.259348 | 7.3:+14710237 | None:intergenic |
CAGTGGTTCAAATCTCAAAA+AGG | 0.259566 | 7.3:-14714430 | MS.gene23508:CDS |
TGTTCTCTACTTCAGGTTCT+AGG | 0.267279 | 7.3:-14710308 | MS.gene23508:intron |
ATCTTGATCAATTCTATTAA+TGG | 0.278783 | 7.3:+14712404 | None:intergenic |
GGTTGCAATGGGACTCTTGC+AGG | 0.282998 | 7.3:+14717388 | None:intergenic |
GATTTGAGAGTTGCCATCTC+TGG | 0.283526 | 7.3:-14714304 | MS.gene23508:CDS |
CATTCATCCACATATTATTA+GGG | 0.284288 | 7.3:-14711971 | MS.gene23508:CDS |
TACTGATTATCTGTTTCCTT+TGG | 0.287387 | 7.3:+14714530 | None:intergenic |
TATCTTCTTCAATTATTTGC+AGG | 0.292751 | 7.3:+14712801 | None:intergenic |
CAAATAATTGAAGAAGATAA+TGG | 0.297851 | 7.3:-14712797 | MS.gene23508:CDS |
AATAGTCAGAGAGGACTATT+TGG | 0.300812 | 7.3:-14713813 | MS.gene23508:CDS |
ACTGATTATCTGTTTCCTTT+GGG | 0.313751 | 7.3:+14714531 | None:intergenic |
CAGTTTCCCAAGTGGCATTT+CGG | 0.317336 | 7.3:+14712256 | None:intergenic |
GCTTCTGGCCTACAGGATTC+TGG | 0.317832 | 7.3:-14713674 | MS.gene23508:CDS |
CTGGAAACCCTTGGGAGGCC+TGG | 0.325393 | 7.3:-14712649 | MS.gene23508:CDS |
ATTTGTCTACTGGTATTAAC+AGG | 0.328166 | 7.3:-14713598 | MS.gene23508:intron |
ACTTTGCATATTCAGATTCC+AGG | 0.332395 | 7.3:+14709665 | None:intergenic |
AGTGCTGTTCATGATGCTTC+TGG | 0.337109 | 7.3:-14713689 | MS.gene23508:CDS |
TTGCCAACTTTGTCTCTGTA+AGG | 0.340991 | 7.3:+14711340 | None:intergenic |
AGCCCCAGCAACTGGCTATA+TGG | 0.348497 | 7.3:-14710232 | MS.gene23508:intron |
ACTTTGCCCCTTGACTTTGA+TGG | 0.354008 | 7.3:+14713709 | None:intergenic |
CACTTCCCTTCAGCACGCTT+CGG | 0.357140 | 7.3:+14714560 | None:intergenic |
CCTCCTGAAGCCCCAGCAAC+TGG | 0.366832 | 7.3:-14710240 | MS.gene23508:CDS |
AGCCTGATGGTCAAGGTGCC+AGG | 0.368170 | 7.3:-14715692 | MS.gene23508:CDS |
GGACTATTTGGTTGACTGTA+TGG | 0.370013 | 7.3:-14713801 | MS.gene23508:CDS |
TGGTCAAGGTGCCAGGGGTT+TGG | 0.371181 | 7.3:-14715685 | MS.gene23508:CDS |
CTTCCAAAGGTGGCACTAAA+CGG | 0.382184 | 7.3:-14715391 | MS.gene23508:CDS |
GAGCCCAGAGATCTTTGATC+TGG | 0.384627 | 7.3:+14715234 | None:intergenic |
TTCCAAAGGTGGCACTAAAC+GGG | 0.385197 | 7.3:-14715390 | MS.gene23508:CDS |
AAGTTTCACTGTTTGATGTT+TGG | 0.385231 | 7.3:+14714332 | None:intergenic |
GGTGGTCAGTGGAGCACTTA+AGG | 0.386722 | 7.3:-14713965 | MS.gene23508:CDS |
TGTCGAAATCTGATGCAATC+AGG | 0.391979 | 7.3:-14712700 | MS.gene23508:CDS |
AAGGTGCCAGGGGTTTGGCT+TGG | 0.393692 | 7.3:-14715680 | MS.gene23508:CDS |
ATCAATGGAGTCGTCGTTGT+TGG | 0.395881 | 7.3:+14711649 | None:intergenic |
ATTTATACAACGGAATCTTC+AGG | 0.397858 | 7.3:+14714277 | None:intergenic |
AATATGTCTGATTTGTCTAC+TGG | 0.398742 | 7.3:-14713608 | MS.gene23508:CDS |
ATTGCTACGTGTTTCGCAAA+TGG | 0.400336 | 7.3:-14712769 | MS.gene23508:CDS |
ATTGTGTTAACATACCCTTT+TGG | 0.408371 | 7.3:+14712219 | None:intergenic |
AGGCCCAGATCAAAGATCTC+TGG | 0.408797 | 7.3:-14715238 | MS.gene23508:CDS |
AGTGCTGATGGAATGATGTT+TGG | 0.410252 | 7.3:-14714695 | MS.gene23508:CDS |
TTGCTACGTGTTTCGCAAAT+GGG | 0.412307 | 7.3:-14712768 | MS.gene23508:CDS |
AGATAATCAGTACCTTAAAA+AGG | 0.412335 | 7.3:-14714519 | MS.gene23508:intron |
CCTAATAATATGTGGATGAA+TGG | 0.413880 | 7.3:+14711972 | None:intergenic |
TCATGATGCTTCTGGCCTAC+AGG | 0.417766 | 7.3:-14713681 | MS.gene23508:CDS |
CTTAAAAGCATTAGACCAAC+AGG | 0.419926 | 7.3:+14709972 | None:intergenic |
TAAACTGCAATTCTTGTTGA+AGG | 0.420099 | 7.3:-14708981 | MS.gene23508:CDS |
TGAAATAGCCTCAAGATTAG+TGG | 0.423165 | 7.3:-14711681 | MS.gene23508:CDS |
CTTCTTATAATTATCATCAA+TGG | 0.427067 | 7.3:+14711634 | None:intergenic |
TCCATCCTCATTTCTTGTGA+TGG | 0.429629 | 7.3:+14708951 | None:intergenic |
AAATAGTCCTCTCTGACTAT+TGG | 0.430169 | 7.3:+14713815 | None:intergenic |
AAATTATCCACTTCAATTGA+TGG | 0.434056 | 7.3:+14715627 | None:intergenic |
ATTTGAGAGTTGCCATCTCT+GGG | 0.434588 | 7.3:-14714303 | MS.gene23508:CDS |
CCCCTGGCACCTTGACCATC+AGG | 0.441143 | 7.3:+14715690 | None:intergenic |
CGTTGTTCCCTGTGGGAAAC+CGG | 0.449287 | 7.3:-14709629 | MS.gene23508:CDS |
GAGCAAAAGTAATATCCAAA+AGG | 0.451321 | 7.3:-14712234 | MS.gene23508:CDS |
ACCTGGGAGATTCTTCCCCT+TGG | 0.453013 | 7.3:-14712603 | MS.gene23508:CDS |
AACATCAAACAGTGAAACTT+TGG | 0.454487 | 7.3:-14714329 | MS.gene23508:CDS |
TCAACTTTGTACATATCAAA+TGG | 0.457516 | 7.3:+14713761 | None:intergenic |
AGCAGAGATGCGTGAAATGC+TGG | 0.457723 | 7.3:-14715180 | MS.gene23508:CDS |
TGCTCATTGATGCTAGCAAT+AGG | 0.458324 | 7.3:-14712014 | MS.gene23508:CDS |
TATTGTCATTTCAGTGCTGA+TGG | 0.458515 | 7.3:-14714707 | MS.gene23508:intron |
CAAGATTGGAGGGAACAAAC+TGG | 0.458917 | 7.3:-14712729 | MS.gene23508:CDS |
CACATCTCCCTTGACTTTAG+CGG | 0.462505 | 7.3:+14715334 | None:intergenic |
TTGAGAAAACTGGAAACCCT+TGG | 0.466084 | 7.3:-14712658 | MS.gene23508:CDS |
TTCTAGGTTGACGAACTTTG+TGG | 0.466090 | 7.3:-14710292 | MS.gene23508:CDS |
TGGAAACCCTTGGGAGGCCT+GGG | 0.466277 | 7.3:-14712648 | MS.gene23508:CDS |
TCTCTCATCTTCTGATCAAT+CGG | 0.467085 | 7.3:-14715589 | MS.gene23508:CDS |
AAATAATTGAAGAAGATAAT+GGG | 0.467660 | 7.3:-14712796 | MS.gene23508:CDS |
TTCAGCACGCTTCGGTTCGC+AGG | 0.467797 | 7.3:+14714568 | None:intergenic |
TTTGCGTACTCTGCTTTCCA+TGG | 0.468447 | 7.3:+14717434 | None:intergenic |
ATTGAAGTGGATAATTTGCC+TGG | 0.469195 | 7.3:-14715621 | MS.gene23508:CDS |
AGTCCTTGCTCTCTATGTGA+TGG | 0.470443 | 7.3:-14714665 | MS.gene23508:CDS |
AAAGCAGAGTACGCAAAATC+AGG | 0.472100 | 7.3:-14717428 | MS.gene23508:CDS |
CGGAGCTTCTCGGTTGCAAT+GGG | 0.474695 | 7.3:+14717377 | None:intergenic |
AGGCTATTTCAATATCTTGA+AGG | 0.475473 | 7.3:+14711693 | None:intergenic |
GCACCATGCTAAGTGTCTCT+TGG | 0.477110 | 7.3:-14715658 | MS.gene23508:CDS |
GAACTTAGAGTCGCTTCGTT+GGG | 0.480032 | 7.3:-14716932 | MS.gene23508:CDS |
AGGGAGATGTGTCTGCGAGC+AGG | 0.481221 | 7.3:-14715322 | MS.gene23508:CDS |
CTCAAGATCACGTGCCGCCC+CGG | 0.481538 | 7.3:+14715271 | None:intergenic |
GGAGGAATGTACCGGTGCAC+TGG | 0.484725 | 7.3:-14714626 | MS.gene23508:CDS |
TTTGCCTGCAGTTTGGCAAA+GGG | 0.487008 | 7.3:-14710055 | MS.gene23508:intron |
GCCGCCTCTAAGTCGAGTGC+TGG | 0.487078 | 7.3:-14716823 | MS.gene23508:CDS |
TGCCAACTTTGTCTCTGTAA+GGG | 0.487650 | 7.3:+14711341 | None:intergenic |
GCCAATGGTCAAGATTCAAC+AGG | 0.488288 | 7.3:-14715155 | MS.gene23508:CDS |
AGAACCATATAGCCAGTTGC+TGG | 0.488876 | 7.3:+14710228 | None:intergenic |
TCTTTAATGTGGAAACATAC+AGG | 0.491969 | 7.3:-14712379 | MS.gene23508:intron |
TGAGAAAACTGGAAACCCTT+GGG | 0.492370 | 7.3:-14712657 | MS.gene23508:CDS |
GCAATGCTGATCCATCAGTC+AGG | 0.495787 | 7.3:-14712044 | MS.gene23508:CDS |
GGCGGAGGCAATATCCTAGT+TGG | 0.497852 | 7.3:+14714400 | None:intergenic |
TTTAGTGCCACCTTTGGAAG+AGG | 0.498151 | 7.3:+14715394 | None:intergenic |
TCCTGTTGAATCTTGACCAT+TGG | 0.499269 | 7.3:+14715154 | None:intergenic |
TGTGTCTGCGAGCAGGGTAG+CGG | 0.500249 | 7.3:-14715315 | MS.gene23508:CDS |
AAAGCATTCTACTAAAGGAC+TGG | 0.500575 | 7.3:-14709701 | MS.gene23508:CDS |
ACGGAGCTTCTCGGTTGCAA+TGG | 0.502052 | 7.3:+14717376 | None:intergenic |
CAAAGATCTCTGGGCTCTGA+AGG | 0.505056 | 7.3:-14715228 | MS.gene23508:CDS |
TCCACATATTATTAGGGATG+AGG | 0.505116 | 7.3:-14711965 | MS.gene23508:CDS |
AGCAAAAGTAATATCCAAAA+GGG | 0.506378 | 7.3:-14712233 | MS.gene23508:intron |
CAAGGAAAGCATTCTACTAA+AGG | 0.506710 | 7.3:-14709706 | MS.gene23508:CDS |
GTTTCGCAAACTTCACGTGC+TGG | 0.507650 | 7.3:-14716775 | MS.gene23508:CDS |
TCTTCACTGTCATGAGGAAG+TGG | 0.510609 | 7.3:+14711593 | None:intergenic |
ACCCTCAAAACGCGAAGCCA+TGG | 0.510955 | 7.3:-14717451 | MS.gene23508:CDS |
AAGAAATAGTACAATTTCCA+AGG | 0.514163 | 7.3:+14712586 | None:intergenic |
TCAGCAGGAGTCCTTGATGA+TGG | 0.514978 | 7.3:+14714379 | None:intergenic |
CGAAGCGTGCTGAAGGGAAG+TGG | 0.517630 | 7.3:-14714559 | MS.gene23508:CDS |
AAGACTATTCAGAAGCAACC+TGG | 0.518065 | 7.3:-14712620 | MS.gene23508:CDS |
ATCAATTCTATTAATGGAGG+GGG | 0.518129 | 7.3:+14712410 | None:intergenic |
GCCTGATGGTCAAGGTGCCA+GGG | 0.518214 | 7.3:-14715691 | MS.gene23508:CDS |
GAAATAGCCTCAAGATTAGT+GGG | 0.518552 | 7.3:-14711680 | MS.gene23508:CDS |
CGCAAAATTGATGCAGTAGG+TGG | 0.519400 | 7.3:-14714122 | MS.gene23508:CDS |
GCCAACTTTGTCTCTGTAAG+GGG | 0.519558 | 7.3:+14711342 | None:intergenic |
TCTAGGTTGACGAACTTTGT+GGG | 0.519658 | 7.3:-14710291 | MS.gene23508:CDS |
GAGGTGCAATTCTCAGTCCT+TGG | 0.520896 | 7.3:+14710259 | None:intergenic |
CATGAGGCCATCGAATTTGG+AGG | 0.521208 | 7.3:+14717334 | None:intergenic |
GGGAGATGTGTCTGCGAGCA+GGG | 0.522810 | 7.3:-14715321 | MS.gene23508:CDS |
TTGGCAACAGAATGCTCCTA+TGG | 0.523040 | 7.3:-14711324 | MS.gene23508:CDS |
TGCAATTCTTGTTGAAGGTG+AGG | 0.523731 | 7.3:-14708976 | MS.gene23508:CDS |
ACAGAAGTTTGACTTTCAGC+AGG | 0.526769 | 7.3:+14714364 | None:intergenic |
GTCGAAATCTGATGCAATCA+GGG | 0.527691 | 7.3:-14712699 | MS.gene23508:CDS |
GGCTATTTCAATATCTTGAA+GGG | 0.528095 | 7.3:+14711694 | None:intergenic |
AAGTACATTGAGAGCGGTGG+TGG | 0.529024 | 7.3:-14716889 | MS.gene23508:CDS |
GTCAAAGGCCGCTAAAGTCA+AGG | 0.529642 | 7.3:-14715342 | MS.gene23508:CDS |
CGCATATCTACTAAGCCTGA+TGG | 0.530256 | 7.3:-14715705 | MS.gene23508:CDS |
TGATGACACCGGTTTCCCAC+AGG | 0.530388 | 7.3:+14709621 | None:intergenic |
ACTGGGCAAGAAAATGCCCC+TGG | 0.531158 | 7.3:-14709683 | MS.gene23508:CDS |
AGCCCAGAGATCTTTGATCT+GGG | 0.531514 | 7.3:+14715235 | None:intergenic |
ATAATATGTGGATGAATGGA+AGG | 0.532035 | 7.3:+14711976 | None:intergenic |
AAGTGGATAATTTGCCTGGA+TGG | 0.532909 | 7.3:-14715617 | MS.gene23508:CDS |
TCCTCATCCCTAATAATATG+TGG | 0.533242 | 7.3:+14711964 | None:intergenic |
GGCCCAGATCAAAGATCTCT+GGG | 0.533562 | 7.3:-14715237 | MS.gene23508:CDS |
TTTGAACCAGCATTCGACTT+CGG | 0.536967 | 7.3:+14716853 | None:intergenic |
AGCTTGATTTGCGTGACCGT+TGG | 0.538235 | 7.3:-14715127 | MS.gene23508:intron |
TGCGAACCGAAGCGTGCTGA+AGG | 0.538550 | 7.3:-14714566 | MS.gene23508:CDS |
GAACCATATAGCCAGTTGCT+GGG | 0.542371 | 7.3:+14710229 | None:intergenic |
CTTCGGTTCGCAGGTAGAGT+AGG | 0.542539 | 7.3:+14714577 | None:intergenic |
GATCAAGATGCTCTTTAATG+TGG | 0.543678 | 7.3:-14712390 | MS.gene23508:CDS |
ATGTACAAAGTTGAAATGAT+TGG | 0.544000 | 7.3:-14713752 | MS.gene23508:CDS |
AGAACTTAGAGTCGCTTCGT+TGG | 0.544067 | 7.3:-14716933 | MS.gene23508:CDS |
CTTCATGCAAAAGTGAAGAA+AGG | 0.545004 | 7.3:-14714095 | MS.gene23508:intron |
GCAACCGAGAAGCTCCGTCT+TGG | 0.548248 | 7.3:-14717371 | MS.gene23508:CDS |
CGAGTGGGAAATGACAAGAT+TGG | 0.548954 | 7.3:-14712743 | MS.gene23508:CDS |
TCCAAAGGTGGCACTAAACG+GGG | 0.550317 | 7.3:-14715389 | MS.gene23508:CDS |
GGCACACCGAAGTCGAATGC+TGG | 0.551393 | 7.3:-14716859 | MS.gene23508:CDS |
TGATCAATTCTATTAATGGA+GGG | 0.554166 | 7.3:+14712408 | None:intergenic |
TTGATCAATTCTATTAATGG+AGG | 0.555295 | 7.3:+14712407 | None:intergenic |
TGAGCTCATACACATTTCCA+AGG | 0.555953 | 7.3:+14709940 | None:intergenic |
CCAGTTGCTGGGGCTTCAGG+AGG | 0.557381 | 7.3:+14710240 | None:intergenic |
ACTGAGCACTCTTGCTGACA+AGG | 0.558738 | 7.3:+14710018 | None:intergenic |
GATCAATTCTATTAATGGAG+GGG | 0.558979 | 7.3:+14712409 | None:intergenic |
GCTGAAAGTCAAACTTCTGT+AGG | 0.559238 | 7.3:-14714361 | MS.gene23508:CDS |
ATCTTCAGGCAACCCAGAGA+TGG | 0.559690 | 7.3:+14714291 | None:intergenic |
ATTGATCTCAAATTCCATCA+TGG | 0.560644 | 7.3:+14712283 | None:intergenic |
AGCAAGCTATCCCTGACTGA+TGG | 0.560975 | 7.3:+14712033 | None:intergenic |
TACAGATACTAACTGCTTGG+TGG | 0.561481 | 7.3:-14713983 | MS.gene23508:intron |
AATATGTCCGAAATGCCACT+TGG | 0.562170 | 7.3:-14712263 | MS.gene23508:CDS |
TGCTACGTGTTTCGCAAATG+GGG | 0.565409 | 7.3:-14712767 | MS.gene23508:CDS |
TTTGTTCCCAGGCCTCCCAA+GGG | 0.569125 | 7.3:+14712642 | None:intergenic |
CTTTGCATATTCAGATTCCA+GGG | 0.571220 | 7.3:+14709666 | None:intergenic |
GTTTCGCAAATGGGGTCGAG+TGG | 0.571251 | 7.3:-14712759 | MS.gene23508:CDS |
GTGGGAAATGACAAGATTGG+AGG | 0.572154 | 7.3:-14712740 | MS.gene23508:CDS |
ACTTACAGATACTAACTGCT+TGG | 0.575225 | 7.3:-14713986 | MS.gene23508:intron |
ACTATCTCCATCAATTGAAG+TGG | 0.576095 | 7.3:-14715634 | MS.gene23508:CDS |
GAGAGCGGTGGTGGTAGTAG+TGG | 0.577586 | 7.3:-14716880 | MS.gene23508:CDS |
ATGGTCACCATCAAAGTCAA+GGG | 0.578992 | 7.3:-14713716 | MS.gene23508:CDS |
TATTGCCTCCGCCATCATCA+AGG | 0.581370 | 7.3:-14714390 | MS.gene23508:CDS |
ACTAACTGCTTGGTGGTCAG+TGG | 0.581725 | 7.3:-14713976 | MS.gene23508:CDS |
CATGGTCACCATCAAAGTCA+AGG | 0.582667 | 7.3:-14713717 | MS.gene23508:CDS |
ACCGGTGTCATCAAATGTCA+AGG | 0.583088 | 7.3:-14709611 | MS.gene23508:CDS |
TATAGACATACCGTATGTGT+GGG | 0.584053 | 7.3:+14711530 | None:intergenic |
TCCAAGGGGAAGAATCTCCC+AGG | 0.585297 | 7.3:+14712602 | None:intergenic |
GATGAGAGACTACTCCATCC+AGG | 0.585331 | 7.3:+14715603 | None:intergenic |
AGAAATAGTACAATTTCCAA+GGG | 0.587610 | 7.3:+14712587 | None:intergenic |
ATGGTGCCAAGCCAAACCCC+TGG | 0.590698 | 7.3:+14715674 | None:intergenic |
AGACTATTCAGAAGCAACCT+GGG | 0.591957 | 7.3:-14712619 | MS.gene23508:CDS |
TCTGGCCACATACTAGAGGA+AGG | 0.592429 | 7.3:-14713656 | MS.gene23508:CDS |
GCTGATGGAATGATGTTTGG+AGG | 0.592452 | 7.3:-14714692 | MS.gene23508:CDS |
GTTATTCTGGAGGAATGTAC+CGG | 0.592767 | 7.3:-14714634 | MS.gene23508:CDS |
TCTACTAAGCCTGATGGTCA+AGG | 0.596570 | 7.3:-14715699 | MS.gene23508:CDS |
GTAGAATGCTTTCCTTGCGG+AGG | 0.597209 | 7.3:+14709712 | None:intergenic |
GGAGTCCTTGATGATGGCGG+AGG | 0.598242 | 7.3:+14714385 | None:intergenic |
TCAAAGGCCGCTAAAGTCAA+GGG | 0.599366 | 7.3:-14715341 | MS.gene23508:CDS |
GCCCCTTACAGAGACAAAGT+TGG | 0.599749 | 7.3:-14711343 | MS.gene23508:CDS |
AAACCATCACATAGAGAGCA+AGG | 0.601001 | 7.3:+14714662 | None:intergenic |
AAGTTGAGATGCGGAAGGCA+AGG | 0.601482 | 7.3:-14713939 | MS.gene23508:intron |
TGGGAAATGACAAGATTGGA+GGG | 0.601675 | 7.3:-14712739 | MS.gene23508:CDS |
AACAGAATGCTCCTATGGCA+TGG | 0.602372 | 7.3:-14711319 | MS.gene23508:intron |
AGGTTCCATCACAAGAAATG+AGG | 0.602431 | 7.3:-14708956 | None:intergenic |
AAGCATTCTACTAAAGGACT+GGG | 0.602949 | 7.3:-14709700 | MS.gene23508:CDS |
GATTGGTGAGGCTTCTAGCA+TGG | 0.603400 | 7.3:-14713735 | MS.gene23508:CDS |
TCTTCAATATGCACTCAGCA+TGG | 0.604013 | 7.3:+14717081 | None:intergenic |
TTTCGCAAATGGGGTCGAGT+GGG | 0.606651 | 7.3:-14712758 | MS.gene23508:CDS |
ATATAGACATACCGTATGTG+TGG | 0.608110 | 7.3:+14711529 | None:intergenic |
ACGTGATCTTGAGAATAGAC+TGG | 0.608484 | 7.3:-14715261 | MS.gene23508:CDS |
TCAATCGGCGGTCAGTGAGT+TGG | 0.609881 | 7.3:-14715574 | MS.gene23508:CDS |
CGGAAATGTATCCAGTGCAC+CGG | 0.610371 | 7.3:+14714615 | None:intergenic |
GCCTTGACATTTGATGACAC+CGG | 0.612387 | 7.3:+14709610 | None:intergenic |
CTCATCTTCTGATCAATCGG+CGG | 0.612790 | 7.3:-14715586 | MS.gene23508:CDS |
GTCAAATCCCACTAATCTTG+AGG | 0.614798 | 7.3:+14711673 | None:intergenic |
AAGCTTAAAACTTACTTGAG+CGG | 0.615129 | 7.3:+14709549 | None:intergenic |
AAACGCAAAATTGATGCAGT+AGG | 0.615874 | 7.3:-14714125 | MS.gene23508:CDS |
CTAAAATCTTCACTGTCATG+AGG | 0.616080 | 7.3:+14711587 | None:intergenic |
GTTCAATCCTCCAAATTCGA+TGG | 0.617034 | 7.3:-14717341 | MS.gene23508:CDS |
TAATATGTGGATGAATGGAA+GGG | 0.619233 | 7.3:+14711977 | None:intergenic |
CCTGATGGTCAAGGTGCCAG+GGG | 0.620093 | 7.3:-14715690 | MS.gene23508:CDS |
AAGTTATGATTACGGGCATG+AGG | 0.620971 | 7.3:+14717318 | None:intergenic |
GTAGGAACATTTACTCCACT+CGG | 0.621416 | 7.3:+14714595 | None:intergenic |
GAGCTCATACACATTTCCAA+GGG | 0.623853 | 7.3:+14709941 | None:intergenic |
CGTGCTGGTTGCAAGCATTG+CGG | 0.624498 | 7.3:-14716760 | MS.gene23508:CDS |
GATGACACCGGTTTCCCACA+GGG | 0.624877 | 7.3:+14709622 | None:intergenic |
AACCATATAGCCAGTTGCTG+GGG | 0.625838 | 7.3:+14710230 | None:intergenic |
CAACAATCCTCTTCCAAAGG+TGG | 0.628043 | 7.3:-14715401 | MS.gene23508:CDS |
ATATGTCCGAAATGCCACTT+GGG | 0.628831 | 7.3:-14712262 | MS.gene23508:CDS |
CGTGAAATGCTGGATGCCAA+TGG | 0.629579 | 7.3:-14715170 | MS.gene23508:CDS |
GCGAACCGAAGCGTGCTGAA+GGG | 0.632007 | 7.3:-14714565 | MS.gene23508:CDS |
GTATGTGGCCAGAATCCTGT+AGG | 0.633585 | 7.3:+14713666 | None:intergenic |
GATGATGTCGTTGTTCCCTG+TGG | 0.635856 | 7.3:-14709637 | MS.gene23508:CDS |
TCCAGCACTCGACTTAGAGG+CGG | 0.639433 | 7.3:+14716822 | None:intergenic |
AGAGGGTGAGCAAAAGTCAA+AGG | 0.641322 | 7.3:-14715357 | MS.gene23508:CDS |
ACACAACAATCCTCTTCCAA+AGG | 0.641848 | 7.3:-14715404 | MS.gene23508:CDS |
CAATGCTGATCCATCAGTCA+GGG | 0.642435 | 7.3:-14712043 | MS.gene23508:CDS |
ACCAAAACTTACCATGCCAT+AGG | 0.643460 | 7.3:+14711308 | None:intergenic |
TTTGGAAGAGGATTGTTGTG+TGG | 0.645988 | 7.3:+14715406 | None:intergenic |
CTGGCCACATACTAGAGGAA+GGG | 0.647983 | 7.3:-14713655 | MS.gene23508:CDS |
AGAAAGTACATTGAGAGCGG+TGG | 0.649025 | 7.3:-14716892 | MS.gene23508:CDS |
GGATTCTGGCCACATACTAG+AGG | 0.653815 | 7.3:-14713660 | MS.gene23508:CDS |
TTTGTGGGCATTCTTAACCA+AGG | 0.654222 | 7.3:-14710276 | MS.gene23508:CDS |
TGGTAGTGGTACAAATGTCG+AGG | 0.657202 | 7.3:-14715447 | MS.gene23508:CDS |
GAAAATACCAATAGTCAGAG+AGG | 0.660210 | 7.3:-14713822 | MS.gene23508:CDS |
TATATGGATAAACCTCCGCA+AGG | 0.661215 | 7.3:-14709724 | MS.gene23508:CDS |
CAAAGTTGAAATGATTGGTG+AGG | 0.661472 | 7.3:-14713747 | MS.gene23508:CDS |
TTAGTAGAATGCTTTCCTTG+CGG | 0.662055 | 7.3:+14709709 | None:intergenic |
TTTGCATATTCAGATTCCAG+GGG | 0.662095 | 7.3:+14709667 | None:intergenic |
TGGAATCTGAATATGCAAAG+TGG | 0.664227 | 7.3:-14709663 | MS.gene23508:CDS |
TGGTCACCATCAAAGTCAAG+GGG | 0.670459 | 7.3:-14713715 | MS.gene23508:CDS |
GAAAACTGGAAACCCTTGGG+AGG | 0.670628 | 7.3:-14712654 | MS.gene23508:CDS |
GCAGGAGTCCTTGATGATGG+CGG | 0.670824 | 7.3:+14714382 | None:intergenic |
TAGACATACCGTATGTGTGG+GGG | 0.672350 | 7.3:+14711532 | None:intergenic |
ATGATGTCGTTGTTCCCTGT+GGG | 0.672597 | 7.3:-14709636 | MS.gene23508:CDS |
GGATGAAGTTGAGATGCGGA+AGG | 0.673329 | 7.3:-14713944 | MS.gene23508:CDS |
ATAGACATACCGTATGTGTG+GGG | 0.680316 | 7.3:+14711531 | None:intergenic |
GTTCCAAGAGACACTTAGCA+TGG | 0.680316 | 7.3:+14715655 | None:intergenic |
CCAAAGGTGGCACTAAACGG+GGG | 0.682751 | 7.3:-14715388 | MS.gene23508:CDS |
ATTAGAAAGTACATTGAGAG+CGG | 0.683297 | 7.3:-14716895 | MS.gene23508:CDS |
TTAAGGATGAAGTTGAGATG+CGG | 0.698261 | 7.3:-14713948 | MS.gene23508:CDS |
TGATCTTGAGAATAGACTGG+AGG | 0.707817 | 7.3:-14715258 | MS.gene23508:CDS |
AGGGAAGTGGAAAATCCCAA+AGG | 0.709398 | 7.3:-14714546 | MS.gene23508:CDS |
GAAATAGTACAATTTCCAAG+GGG | 0.718834 | 7.3:+14712588 | None:intergenic |
GATCTCAAATTCCATCATGG+CGG | 0.725809 | 7.3:+14712286 | None:intergenic |
GATTGGAGGGAACAAACTGG+AGG | 0.726096 | 7.3:-14712726 | MS.gene23508:CDS |
AAATGCTGATGACTCCGGGG+CGG | 0.729846 | 7.3:-14715285 | MS.gene23508:CDS |
GCACTGGATACATTTCCGAG+TGG | 0.746551 | 7.3:-14714610 | MS.gene23508:CDS |
GAAGTGGAGATATATCACAG+TGG | 0.820451 | 7.3:+14711609 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 14708958 | 14717480 | 14708958 | ID=MS.gene23508 |
chr7.3 | mRNA | 14708958 | 14717480 | 14708958 | ID=MS.gene23508.t1;Parent=MS.gene23508 |
chr7.3 | exon | 14717331 | 14717480 | 14717331 | ID=MS.gene23508.t1.exon1;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14717331 | 14717480 | 14717331 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14717062 | 14717111 | 14717062 | ID=MS.gene23508.t1.exon2;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14717062 | 14717111 | 14717062 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14716738 | 14716969 | 14716738 | ID=MS.gene23508.t1.exon3;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14716738 | 14716969 | 14716738 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14715544 | 14715730 | 14715544 | ID=MS.gene23508.t1.exon4;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14715544 | 14715730 | 14715544 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14715128 | 14715470 | 14715128 | ID=MS.gene23508.t1.exon5;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14715128 | 14715470 | 14715128 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14714520 | 14714715 | 14714520 | ID=MS.gene23508.t1.exon6;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14714520 | 14714715 | 14714520 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14714285 | 14714449 | 14714285 | ID=MS.gene23508.t1.exon7;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14714285 | 14714449 | 14714285 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14714096 | 14714156 | 14714096 | ID=MS.gene23508.t1.exon8;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14714096 | 14714156 | 14714096 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14713940 | 14714000 | 14713940 | ID=MS.gene23508.t1.exon9;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14713940 | 14714000 | 14713940 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14713599 | 14713850 | 14713599 | ID=MS.gene23508.t1.exon10;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14713599 | 14713850 | 14713599 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14712598 | 14712832 | 14712598 | ID=MS.gene23508.t1.exon11;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14712598 | 14712832 | 14712598 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14712380 | 14712492 | 14712380 | ID=MS.gene23508.t1.exon12;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14712380 | 14712492 | 14712380 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14712234 | 14712310 | 14712234 | ID=MS.gene23508.t1.exon13;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14712234 | 14712310 | 14712234 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14711948 | 14712108 | 14711948 | ID=MS.gene23508.t1.exon14;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14711948 | 14712108 | 14711948 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14711541 | 14711732 | 14711541 | ID=MS.gene23508.t1.exon15;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14711541 | 14711732 | 14711541 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14711320 | 14711428 | 14711320 | ID=MS.gene23508.t1.exon16;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14711320 | 14711428 | 14711320 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14710233 | 14710315 | 14710233 | ID=MS.gene23508.t1.exon17;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14710233 | 14710315 | 14710233 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14709929 | 14710066 | 14709929 | ID=MS.gene23508.t1.exon18;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14709929 | 14710066 | 14709929 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14709564 | 14709746 | 14709564 | ID=MS.gene23508.t1.exon19;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14709564 | 14709746 | 14709564 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
chr7.3 | exon | 14708958 | 14709005 | 14708958 | ID=MS.gene23508.t1.exon20;Parent=MS.gene23508.t1 |
chr7.3 | CDS | 14708958 | 14709005 | 14708958 | ID=cds.MS.gene23508.t1;Parent=MS.gene23508.t1 |
Gene Sequence |
Protein sequence |