AlfalfaGEDB | MS.gene23509

M. sativa cultivar XinJiangDaYe / MS.gene23509

KEGG: K06072
GO: GO:0003674 GO:0003824 GO:0004497 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009987 GO:0016491 GO:0016705 GO:0018193 GO:0018205 GO:0019135 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:1901564
PFAM: PF13646.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23509.t1	XP_013449858.1	98.1	317	6	0	1	317	1	317	1.30E-164	589

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23509.t1	Q2QLW3	70.8	301	85	1	16	316	1	298	2.5e-111	403.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23509.t1	A0A072U3H2	98.1	317	6	0	1	317	1	317	9.7e-165	589.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene23509	-0.800311	1.53E-48	-1.69E-46
MS.gene049350	MS.gene23509	-0.806003	1.02E-49	-1.69E-46
MS.gene049821	MS.gene23509	-0.801518	8.67E-49	-1.69E-46
MS.gene049825	MS.gene23509	-0.806574	7.70E-50	-1.69E-46
MS.gene049850	MS.gene23509	-0.809585	1.76E-50	-1.69E-46
MS.gene050156	MS.gene23509	-0.802242	6.16E-49	-1.69E-46
MS.gene050201	MS.gene23509	-0.80647	8.10E-50	-1.69E-46
MS.gene050807	MS.gene23509	-0.823674	1.22E-53	-1.69E-46
MS.gene050826	MS.gene23509	-0.807982	3.87E-50	-1.69E-46
MS.gene051594	MS.gene23509	-0.804638	1.96E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23509.t1	MTR_7g096510	98.107	317	6	0	1	317	1	317	0.0	622

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23509.t1	AT3G58180	75.884	311	75	0	7	317	4	314	2.34e-169	473
MS.gene23509.t1	AT3G62530	50.968	155	69	2	151	304	68	216	1.35e-41	144
MS.gene23509.t1	AT3G62530	36.923	130	78	3	22	150	92	218	2.68e-13	68.6

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Find 69 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGAGTAACCTAGAATA+AGG	0.319941	7.3:+14722665	None:intergenic
AACGTTTAATGTACAATTGG+AGG	0.500470	7.3:+14719665	None:intergenic
AACTGAGGTTAATGCAGGTA+TGG	0.493370	7.3:+14722079	None:intergenic
AAGAGATTCATCGAATTTGT+TGG	0.413615	7.3:-14722147	MS.gene23509:CDS
AAGATCAGGGAAATCGTTTG+AGG	0.512480	7.3:-14719785	MS.gene23509:intron
AAGCAGCTTTGTCTTGCAAT+TGG	0.318055	7.3:+14721094	None:intergenic
AAGGGAGTAACCTAGAATAA+GGG	0.546220	7.3:+14722666	None:intergenic
AATAAGGGCGGTGCGAGGGG+CGG	0.393478	7.3:+14722681	None:intergenic
AATACCTGCAATTGAACCAA+GGG	0.629721	7.3:+14721002	None:intergenic
ACCAACTGAAGAACAAGAGC+TGG	0.552840	7.3:+14721712	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTGACACATTCAGAAA+AGG	+	chr7.3:14720504-14720523	None:intergenic	30.0%
AAAGTTAAGCAGCAACATTA+AGG	+	chr7.3:14721302-14721321	None:intergenic	30.0%
AACATACAAATTACTCTCTC+TGG	+	chr7.3:14720852-14720871	None:intergenic	30.0%
AAGAGATTCATCGAATTTGT+TGG	-	chr7.3:14720343-14720362	MS.gene23509:intron	30.0%
AATACATGTTTCATTCTGGA+AGG	+	chr7.3:14719940-14719959	None:intergenic	30.0%
ATGCTAGAATTTGAAAGATC+AGG	-	chr7.3:14722691-14722710	MS.gene23509:CDS	30.0%
CATTGAACCATTATATTCGT+TGG	-	chr7.3:14721184-14721203	MS.gene23509:intron	30.0%
CTGTTGCAGTCAATAATATA+TGG	-	chr7.3:14721547-14721566	MS.gene23509:CDS	30.0%
GACAAAAGAACTATGTAAAC+AGG	+	chr7.3:14722576-14722595	None:intergenic	30.0%
GACTAAACAGACTATATAAC+AGG	+	chr7.3:14722104-14722123	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	14719670	14722842	14719670	ID=MS.gene23509
chr7.3	mRNA	14719670	14722842	14719670	ID=MS.gene23509.t1;Parent=MS.gene23509
chr7.3	exon	14722677	14722842	14722677	ID=MS.gene23509.t1.exon1;Parent=MS.gene23509.t1
chr7.3	CDS	14722677	14722842	14722677	ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1
chr7.3	exon	14722040	14722173	14722040	ID=MS.gene23509.t1.exon2;Parent=MS.gene23509.t1
chr7.3	CDS	14722040	14722173	14722040	ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1
chr7.3	exon	14721704	14721939	14721704	ID=MS.gene23509.t1.exon3;Parent=MS.gene23509.t1
chr7.3	CDS	14721704	14721939	14721704	ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1
chr7.3	exon	14721472	14721610	14721472	ID=MS.gene23509.t1.exon4;Parent=MS.gene23509.t1
chr7.3	CDS	14721472	14721610	14721472	ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1
chr7.3	exon	14721007	14721133	14721007	ID=MS.gene23509.t1.exon5;Parent=MS.gene23509.t1
chr7.3	CDS	14721007	14721133	14721007	ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1
chr7.3	exon	14719786	14719904	14719786	ID=MS.gene23509.t1.exon6;Parent=MS.gene23509.t1
chr7.3	CDS	14719786	14719904	14719786	ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1
chr7.3	exon	14719670	14719702	14719670	ID=MS.gene23509.t1.exon7;Parent=MS.gene23509.t1
chr7.3	CDS	14719670	14719702	14719670	ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1

Gene Sequence

>MS.gene23509

ATGTCTGCGAATTCGCTAAACGACGTCGCTTCGTGCTCATCAGAGATGGAGAAGTTCCTGTGCGAGTTGCTGTTGGACTCAACCCAGCCAATCTCCGAACGCTTCAGAGCACTCTTCTCTCTTCGCAACCTCAAAGGCCCCGCCCCTCGCACCGCCCTTATTCTAGGTTACTCCCTTTTCCTTTTCTCTTCAATTTTACAGCTTGCGCAAAGAACTTATGAGTTATTTTCAGCTTATTTTCGACATAGTTTGTTCAGACAACTTACTCCTTCCAGAATGAAACATGTATTGGAAAAGTTGATGTATTTCATCTAAAATCTAAACCATTTTACTTCAACTTTTCAAGTACCTTTTTGTTTATAGTTCATTGCGGAGGAGTATAGCTTATAATTAAAAGTTTATCTTTTGTTATAGAAATAGCTTATACACAATCACTTATAAGATAAGTTGTTTATCCAAATAGGGCCTTAACATAAAAATAACTTATAAGATAAATGCTTAGCTAAGTTGTTTATCCAAATAGGGACTTAATCAGCGATTGTTGTTAAGTGTTTATAAGATAAAAGCTTAATTAAGTTGTTTATCCAAATAGGGACTTAATCAATCAATGATTGTTGTTAAGTGTATTATTGCATGGATTCTGAACCAGCTTTTCTTTCTCTTTGGCAGCGACAAGAGATTCATCGAATTTGTTGGCACACGAAGCTGCATTTGCATTAGGGCAAATGCAAGAACTCGAAGCCATACCTGCATTAACCTCAGTTCTTAATGATCTTTCCTTGCATCCCATTGTTCGCCATGAGGTAGTACCGTAGTAGCCTTCTATTTCTTCCTTTTCTGAATGTGTCACTTTTTCTGTTTCAATTTTAAGATGATGATTGTGTTTGTTTCAATCTTGCTTAGGCAGCTGAAGCACTAGGCGCTATTGGTTCAGATAGTAATGTTTCTCTTTTGAAGCATAGTTTGGATTCTGATCCAGCTCAAGAGGTTCGAGAAACATGTGAATTAGCTCTTCAACGTATTCTCAATTTAAAACATGCTGCTGCTACTGATGATTCGACAGCACCTGCTATTTCTCCGTTTAAGTCTGTTGATCCTGCAGCACCGGCCAGCTCTTGTTCTTCAGTTGGTCAACTAAGGTTTGTTTGGTTCATGCTGTTAGAAACAGACTCTTGTTAACCAGAGAGAGTAATTTGTATGTTGCTAACTCGGTTTTAAATTAATAATATTAGGGATTTACTTCTCGATGAGGAAAAAGGGATGTATGAGCGCTATGCAGCTCTTTTTGCACTTCGAAATGATGGTGGAAATGAAGCTGTTGCTGCTATTGTTGATTCCTTGGGTTCCAAGAGTGCTTTATTGAAACATGAGGTTTGATAAGTACACTTTTATGTCAATAAACGTTGTCTGCATTCAGTATGTTTTGTATGAATTGCACGTAAGTGGTAATATGCACTTCACATGAGAAAACATCAGGTCAATCTAGAGGGTTCCATATCGTTCGTACTTTTAAACATTGAACCATTATATTCGTTGGAGCAGAATAAGCATGTAATTGTCATGTCAAAAGAAGTCAGCTGTTCTTCAGTAGTTTAATAAAACAATAATTCAAATAATATCATACGACTGCCTTAATGTTGCTGCTTAACTTTGAGTACACCTGTTTGATTCTCTGAATTTTTTAACAACTGTATTTGCTGAAATTTTAGGTTGCATATGTTTTGGGCCAATTGCAAGACAAAGCTGCTTCAGCTGCTCTATCCAATATACTTAGAGATGTGAATGAGCATCCAATGGTTAGACATGAGGCTGCTGAAGCCCTTGGTTCAATTGCAGGTATTGCATTTAAAACCACATACTATGGAATCATGTGACCTCTGTTGCAGTCAATAATATATGGTATTAATATTGCTTTGTGGTGTCATCCATGTATAAAAAGATAAATGCAAGCATATTGTATAGTATATAGAATTCATGAATAGATAGTAATGTAGCAGTCTAAGTAAATGTTCTTTTTGGTAATGAGCATTGAGCAGTTCAACTTAACTTAGGTTGCAACTTTTAGTATTTATGGTGACTCAGTTCATATCTGTATGGTTTTGACTGGTCAAAATTCAAACGTAAGCTCATTCTCTTAGTTTGCAAATAAAAAAGTAGAGGTGTTGGAGAAGGCACCTGTTAGTTTTTACTATTCAAAGTGATTTTAAAGTTTTATGCTTCTTGGTTGGATTTGGTCGAGATATATTATGCATCAATTTGAAGAGCGTCTAACTATTAGTTCATGGGTGCAATCAATATCTTTTAGTTTGAGACAATCTTTCTGTTCTCGTTGGTTCTACCTTTTTACATGGACCAACGAATACCATAAGGCTTTGTCACGTATTACTTCAAAGATAGATTTTTTTCATGTAGATACTTCTTTGTGATTTGGCCTGTTATATAGTCTGTTTAGTCTCTGCATCTGGAATTTTTAATCTATCTTCTATTTGGTCGACTCTTTTTACTGGTGCTTCTACATCTCTTTTTCACACATGTCCAAATCACTAAAACATGAATTTATTTCCTTTGGCAGCTTCCCCAACTTTTTTAGTTGAACCAAAATTTACTAAACATAGAACACAAATGTTATGTTTTGTGCTTTTCTTCTGTTCTAAGATATTTACCAAATGCTACCCAAGTTTGACTTCAGTTTAATTTTGAGAAAATTTATTTAATCTCTTAGTTTTACTTTAATTTAATTTTGCTTATCTTTATTTAATCTTTTACCAAGTTTGACTTCTATTTAATTTTGCCTCTGGTAGAGTCACATGACAGATATCAGTTGACTAATTGATCATTTATTGCCTCAATGTTTTTATTTATCACTAAGTTTAGTTGTGAATACTTCTAAATATTCGAATCTCCCTGTTTACATAGTTCTTTTGTCGTATGTTCTTAGATGACCAAAGTGTATACCTTCTTGAAGAATTTTCGGCAGACCCAGAGCCTCTTGTTGCACAAAGTTGTCAAGTTGCTCTAAGCATGCTAGAATTTGAAAGATCAGGGAAATCGTTTGAGGTATACACCTTGGTACTTGCTGAAGATTTTCATAATTTGCTTCAATGTTTGTTGACACTACTATCTTTTTCTCTTGGTTGCAGTTCCTGTTCATGCGTCCTCCAATTGTACATTAA

Protein sequence

>MS.gene23509.t1

MSANSLNDVASCSSEMEKFLCELLLDSTQPISERFRALFSLRNLKGPAPRTALILATRDSSNLLAHEAAFALGQMQELEAIPALTSVLNDLSLHPIVRHEAAEALGAIGSDSNVSLLKHSLDSDPAQEVRETCELALQRILNLKHAAATDDSTAPAISPFKSVDPAAPASSCSSVGQLRDLLLDEEKGMYERYAALFALRNDGGNEAVAAIVDSLGSKSALLKHEVAYVLGQLQDKAASAALSNILRDVNEHPMVRHEAAEALGSIADDQSVYLLEEFSADPEPLVAQSCQVALSMLEFERSGKSFEFLFMRPPIVH