Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23509.t1 | XP_013449858.1 | 98.1 | 317 | 6 | 0 | 1 | 317 | 1 | 317 | 1.30E-164 | 589 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23509.t1 | Q2QLW3 | 70.8 | 301 | 85 | 1 | 16 | 316 | 1 | 298 | 2.5e-111 | 403.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23509.t1 | A0A072U3H2 | 98.1 | 317 | 6 | 0 | 1 | 317 | 1 | 317 | 9.7e-165 | 589.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene23509 | -0.800311 | 1.53E-48 | -1.69E-46 |
| MS.gene049350 | MS.gene23509 | -0.806003 | 1.02E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene23509 | -0.801518 | 8.67E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene23509 | -0.806574 | 7.70E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene23509 | -0.809585 | 1.76E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene23509 | -0.802242 | 6.16E-49 | -1.69E-46 |
| MS.gene050201 | MS.gene23509 | -0.80647 | 8.10E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene23509 | -0.823674 | 1.22E-53 | -1.69E-46 |
| MS.gene050826 | MS.gene23509 | -0.807982 | 3.87E-50 | -1.69E-46 |
| MS.gene051594 | MS.gene23509 | -0.804638 | 1.96E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene23509 | -0.849482 | 3.14E-60 | -1.69E-46 |
| MS.gene051720 | MS.gene23509 | -0.829669 | 4.52E-55 | -1.69E-46 |
| MS.gene052358 | MS.gene23509 | 0.862664 | 4.32E-64 | -1.69E-46 |
| MS.gene052361 | MS.gene23509 | 0.830618 | 2.65E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene23509 | -0.80305 | 4.20E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene23509 | -0.836065 | 1.16E-56 | -1.69E-46 |
| MS.gene052582 | MS.gene23509 | -0.81052 | 1.11E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene23509 | -0.80544 | 1.33E-49 | -1.69E-46 |
| MS.gene052673 | MS.gene23509 | 0.890024 | 1.43E-73 | -1.69E-46 |
| MS.gene052863 | MS.gene23509 | -0.822061 | 2.90E-53 | -1.69E-46 |
| MS.gene052896 | MS.gene23509 | -0.80753 | 4.83E-50 | -1.69E-46 |
| MS.gene053054 | MS.gene23509 | 0.813265 | 2.79E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene23509 | -0.80518 | 1.51E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene23509 | -0.800309 | 1.53E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene23509 | -0.811265 | 7.63E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene23509 | -0.801978 | 6.98E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene23509 | -0.82852 | 8.59E-55 | -1.69E-46 |
| MS.gene054291 | MS.gene23509 | 0.835594 | 1.53E-56 | -1.69E-46 |
| MS.gene054468 | MS.gene23509 | -0.804524 | 2.07E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene23509 | -0.807823 | 4.19E-50 | -1.69E-46 |
| MS.gene054991 | MS.gene23509 | -0.812337 | 4.46E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene23509 | -0.801938 | 7.11E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene23509 | -0.831948 | 1.25E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene23509 | -0.821022 | 5.04E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene23509 | -0.849292 | 3.55E-60 | -1.69E-46 |
| MS.gene055926 | MS.gene23509 | -0.804415 | 2.18E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene23509 | -0.807365 | 5.24E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene23509 | -0.822099 | 2.84E-53 | -1.69E-46 |
| MS.gene057060 | MS.gene23509 | -0.800149 | 1.65E-48 | -1.69E-46 |
| MS.gene057444 | MS.gene23509 | -0.801195 | 1.01E-48 | -1.69E-46 |
| MS.gene057921 | MS.gene23509 | -0.812038 | 5.18E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene23509 | -0.851445 | 8.84E-61 | -1.69E-46 |
| MS.gene05954 | MS.gene23509 | -0.805609 | 1.23E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene23509 | 0.849845 | 2.49E-60 | -1.69E-46 |
| MS.gene060322 | MS.gene23509 | -0.826395 | 2.78E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene23509 | -0.812588 | 3.93E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene23509 | 0.859244 | 4.73E-63 | -1.69E-46 |
| MS.gene060803 | MS.gene23509 | -0.800289 | 1.55E-48 | -1.69E-46 |
| MS.gene061040 | MS.gene23509 | 0.841941 | 3.50E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23509.t1 | MTR_7g096510 | 98.107 | 317 | 6 | 0 | 1 | 317 | 1 | 317 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23509.t1 | AT3G58180 | 75.884 | 311 | 75 | 0 | 7 | 317 | 4 | 314 | 2.34e-169 | 473 |
| MS.gene23509.t1 | AT3G62530 | 50.968 | 155 | 69 | 2 | 151 | 304 | 68 | 216 | 1.35e-41 | 144 |
| MS.gene23509.t1 | AT3G62530 | 36.923 | 130 | 78 | 3 | 22 | 150 | 92 | 218 | 2.68e-13 | 68.6 |
Find 69 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTTCTCGATGAGGAAAA+AGG | 0.236522 | 7.3:-14721584 | MS.gene23509:CDS |
| CCTCGCACCGCCCTTATTCT+AGG | 0.251159 | 7.3:-14722676 | MS.gene23509:intron |
| TGCTGCTATTGTTGATTCCT+TGG | 0.290741 | 7.3:-14721501 | MS.gene23509:CDS |
| ATTCACATCTCTAAGTATAT+TGG | 0.307934 | 7.3:+14721059 | None:intergenic |
| AAGCAGCTTTGTCTTGCAAT+TGG | 0.318055 | 7.3:+14721094 | None:intergenic |
| CACGAAGCTGCATTTGCATT+AGG | 0.319693 | 7.3:-14722122 | MS.gene23509:CDS |
| AAAGGGAGTAACCTAGAATA+AGG | 0.319941 | 7.3:+14722665 | None:intergenic |
| GAAGCCCTTGGTTCAATTGC+AGG | 0.331761 | 7.3:-14721006 | MS.gene23509:intron |
| TGAAGCGTTCGGAGATTGGC+TGG | 0.334155 | 7.3:+14722737 | None:intergenic |
| ATAAGGGCGGTGCGAGGGGC+GGG | 0.339458 | 7.3:+14722682 | None:intergenic |
| ACGAAGCTGCATTTGCATTA+GGG | 0.353033 | 7.3:-14722121 | MS.gene23509:CDS |
| ATGCTAGAATTTGAAAGATC+AGG | 0.354231 | 7.3:-14719799 | MS.gene23509:CDS |
| CAAGAGCTGGCCGGTGCTGC+AGG | 0.367951 | 7.3:+14721725 | None:intergenic |
| TGCGAGGGGCGGGGCCTTTG+AGG | 0.372831 | 7.3:+14722692 | None:intergenic |
| TAAGGGCGGTGCGAGGGGCG+GGG | 0.381669 | 7.3:+14722683 | None:intergenic |
| CTTTGTGCAACAAGAGGCTC+TGG | 0.382092 | 7.3:+14719841 | None:intergenic |
| GCTGAAGCACTAGGCGCTAT+TGG | 0.386313 | 7.3:-14721914 | MS.gene23509:CDS |
| GCTGCTATTGTTGATTCCTT+GGG | 0.393386 | 7.3:-14721500 | MS.gene23509:CDS |
| AATAAGGGCGGTGCGAGGGG+CGG | 0.393478 | 7.3:+14722681 | None:intergenic |
| AAGAGATTCATCGAATTTGT+TGG | 0.413615 | 7.3:-14722147 | MS.gene23509:CDS |
| GTTCTTCAGTTGGTCAACTA+AGG | 0.420278 | 7.3:-14721703 | MS.gene23509:intron |
| GAAAACGTTTAATGTACAAT+TGG | 0.420894 | 7.3:+14719662 | None:intergenic |
| ATGTTTCAATAAAGCACTCT+TGG | 0.443976 | 7.3:+14721475 | None:intergenic |
| GCTCTGAAGCGTTCGGAGAT+TGG | 0.445480 | 7.3:+14722733 | None:intergenic |
| CAATTGGAGGACGCATGAAC+AGG | 0.447305 | 7.3:+14719678 | None:intergenic |
| CTTCAAGAAGGTATACACTT+TGG | 0.450900 | 7.3:+14719878 | None:intergenic |
| GCCAGCTCTTGTTCTTCAGT+TGG | 0.457141 | 7.3:-14721713 | MS.gene23509:CDS |
| GTCTGTTGATCCTGCAGCAC+CGG | 0.466493 | 7.3:-14721735 | MS.gene23509:CDS |
| GAAGAGTGCTCTGAAGCGTT+CGG | 0.477233 | 7.3:+14722726 | None:intergenic |
| ACTACCTCATGGCGAACAAT+GGG | 0.478742 | 7.3:+14722035 | None:intergenic |
| GTTTCTCGAACCTCTTGAGC+TGG | 0.484293 | 7.3:+14721845 | None:intergenic |
| GCAGGATCAACAGACTTAAA+CGG | 0.491292 | 7.3:+14721743 | None:intergenic |
| AACTGAGGTTAATGCAGGTA+TGG | 0.493370 | 7.3:+14722079 | None:intergenic |
| GCTTAGGCAGCTGAAGCACT+AGG | 0.495965 | 7.3:-14721923 | MS.gene23509:intron |
| GAAGCGTTCGGAGATTGGCT+GGG | 0.496757 | 7.3:+14722738 | None:intergenic |
| AACGTTTAATGTACAATTGG+AGG | 0.500470 | 7.3:+14719665 | None:intergenic |
| TAGAATAAGGGCGGTGCGAG+GGG | 0.501591 | 7.3:+14722678 | None:intergenic |
| TGCTAGAATTTGAAAGATCA+GGG | 0.509212 | 7.3:-14719798 | MS.gene23509:CDS |
| GTTCCTGTGCGAGTTGCTGT+TGG | 0.510297 | 7.3:-14722767 | MS.gene23509:CDS |
| TACTACCTCATGGCGAACAA+TGG | 0.510393 | 7.3:+14722034 | None:intergenic |
| AAGATCAGGGAAATCGTTTG+AGG | 0.512480 | 7.3:-14719785 | MS.gene23509:intron |
| CATGAGGCTGCTGAAGCCCT+TGG | 0.515557 | 7.3:-14721018 | MS.gene23509:CDS |
| GCAGCCTCATGTCTAACCAT+TGG | 0.519278 | 7.3:+14721030 | None:intergenic |
| CGCTTCGTGCTCATCAGAGA+TGG | 0.529035 | 7.3:-14722794 | MS.gene23509:CDS |
| CTAGAATAAGGGCGGTGCGA+GGG | 0.531517 | 7.3:+14722677 | None:intergenic |
| TTCTCTCTTCGCAACCTCAA+AGG | 0.536423 | 7.3:-14722706 | MS.gene23509:CDS |
| GGATTCTGATCCAGCTCAAG+AGG | 0.544300 | 7.3:-14721855 | MS.gene23509:CDS |
| AAGGGAGTAACCTAGAATAA+GGG | 0.546220 | 7.3:+14722666 | None:intergenic |
| ACCAACTGAAGAACAAGAGC+TGG | 0.552840 | 7.3:+14721712 | None:intergenic |
| TGACAACTTTGTGCAACAAG+AGG | 0.553059 | 7.3:+14719835 | None:intergenic |
| GACTTAAACGGAGAAATAGC+AGG | 0.567631 | 7.3:+14721755 | None:intergenic |
| TTAAGAACTGAGGTTAATGC+AGG | 0.570810 | 7.3:+14722074 | None:intergenic |
| AGTCCAACAGCAACTCGCAC+AGG | 0.572500 | 7.3:+14722764 | None:intergenic |
| TAAAGCACTCTTGGAACCCA+AGG | 0.578502 | 7.3:+14721484 | None:intergenic |
| GAGTGCTTTATTGAAACATG+AGG | 0.578510 | 7.3:-14721471 | MS.gene23509:intron |
| ATGGCGAACAATGGGATGCA+AGG | 0.582507 | 7.3:+14722043 | None:intergenic |
| TTTGCACTTCGAAATGATGG+TGG | 0.586504 | 7.3:-14721536 | MS.gene23509:CDS |
| TAGGGATTTACTTCTCGATG+AGG | 0.598291 | 7.3:-14721591 | MS.gene23509:CDS |
| CTGCCGAAAATTCTTCAAGA+AGG | 0.610074 | 7.3:+14719866 | None:intergenic |
| GCATCCCATTGTTCGCCATG+AGG | 0.616911 | 7.3:-14722039 | MS.gene23509:intron |
| ACTGAAGAACAAGAGCTGGC+CGG | 0.622351 | 7.3:+14721716 | None:intergenic |
| CCTAGAATAAGGGCGGTGCG+AGG | 0.629672 | 7.3:+14722676 | None:intergenic |
| AATACCTGCAATTGAACCAA+GGG | 0.629721 | 7.3:+14721002 | None:intergenic |
| GCATCCAATGGTTAGACATG+AGG | 0.635787 | 7.3:-14721034 | MS.gene23509:CDS |
| CAATACCTGCAATTGAACCA+AGG | 0.638670 | 7.3:+14721001 | None:intergenic |
| AGATGTGAATGAGCATCCAA+TGG | 0.641853 | 7.3:-14721046 | MS.gene23509:CDS |
| GGAAAGATCATTAAGAACTG+AGG | 0.652674 | 7.3:+14722064 | None:intergenic |
| TTTGTGCAACAAGAGGCTCT+GGG | 0.657645 | 7.3:+14719842 | None:intergenic |
| GGAGTAACCTAGAATAAGGG+CGG | 0.721114 | 7.3:+14722669 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTTTTAAATTAATAATATT+AGG | - | chr7.3:14720880-14720899 | MS.gene23509:intron | 10.0% |
| !!! | TATAAGTTATTTTTATGTTA+AGG | + | chr7.3:14720138-14720157 | None:intergenic | 10.0% |
| !!! | TTTTTAATCTATCTTCTATT+TGG | - | chr7.3:14722137-14722156 | MS.gene23509:CDS | 15.0% |
| !! | AAACATGAATTTATTTCCTT+TGG | - | chr7.3:14722216-14722235 | MS.gene23509:intron | 20.0% |
| !! | AATTAAATAGAAGTCAAACT+TGG | + | chr7.3:14722438-14722457 | None:intergenic | 20.0% |
| !! | AGTGATAAATAAAAACATTG+AGG | + | chr7.3:14722516-14722535 | None:intergenic | 20.0% |
| !! | ATAAGTTGTTTATCCAAATA+GGG | - | chr7.3:14720112-14720131 | MS.gene23509:intron | 20.0% |
| !! | TTTGAATAGTAAAAACTAAC+AGG | + | chr7.3:14721847-14721866 | None:intergenic | 20.0% |
| !!! | AAATTCATGTTTTAGTGATT+TGG | + | chr7.3:14722208-14722227 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+AGG | - | chr7.3:14720240-14720259 | MS.gene23509:intron | 20.0% |
| !!! | GTTCTATGTTTAGTAAATTT+TGG | + | chr7.3:14722268-14722287 | None:intergenic | 20.0% |
| !!! | TGCATTTATCTTTTTATACA+TGG | + | chr7.3:14721598-14721617 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+GGG | - | chr7.3:14720241-14720260 | MS.gene23509:intron | 20.0% |
| !!! | TTTTAAAGTTTTATGCTTCT+TGG | - | chr7.3:14721871-14721890 | MS.gene23509:CDS | 20.0% |
| !!! | TTTTTGTTTATAGTTCATTG+CGG | - | chr7.3:14720020-14720039 | MS.gene23509:intron | 20.0% |
| ! | AAAAATTCAGAGAATCAAAC+AGG | + | chr7.3:14721332-14721351 | None:intergenic | 25.0% |
| ! | AAATTGAAGAGAAAAGGAAA+AGG | + | chr7.3:14719846-14719865 | None:intergenic | 25.0% |
| ! | AATTAAACTGAAGTCAAACT+TGG | + | chr7.3:14722346-14722365 | None:intergenic | 25.0% |
| ! | AATTGAAGAGAAAAGGAAAA+GGG | + | chr7.3:14719845-14719864 | None:intergenic | 25.0% |
| ! | ACAAAAGAACTATGTAAACA+GGG | + | chr7.3:14722575-14722594 | None:intergenic | 25.0% |
| ! | ATGGTATTAATATTGCTTTG+TGG | - | chr7.3:14721566-14721585 | MS.gene23509:CDS | 25.0% |
| ! | ATTAAACTGAAGTCAAACTT+GGG | + | chr7.3:14722345-14722364 | None:intergenic | 25.0% |
| ! | ATTCACATCTCTAAGTATAT+TGG | + | chr7.3:14721434-14721453 | None:intergenic | 25.0% |
| ! | CTAAGTTGTTTATCCAAATA+GGG | - | chr7.3:14720172-14720191 | MS.gene23509:intron | 25.0% |
| ! | CTTGAAAAGTTGAAGTAAAA+TGG | + | chr7.3:14719996-14720015 | None:intergenic | 25.0% |
| ! | GATAAGTTGTTTATCCAAAT+AGG | - | chr7.3:14720111-14720130 | MS.gene23509:intron | 25.0% |
| ! | GCAATGAACTATAAACAAAA+AGG | + | chr7.3:14720021-14720040 | None:intergenic | 25.0% |
| ! | GTTTGCAAATAAAAAAGTAG+AGG | - | chr7.3:14721807-14721826 | MS.gene23509:CDS | 25.0% |
| ! | TTGGTTCAACTAAAAAAGTT+GGG | + | chr7.3:14722249-14722268 | None:intergenic | 25.0% |
| ! | TTGTTAAGTGTATTATTGCA+TGG | - | chr7.3:14720284-14720303 | MS.gene23509:intron | 25.0% |
| !! | AAATAAAAAAGTAGAGGTGT+TGG | - | chr7.3:14721813-14721832 | MS.gene23509:CDS | 25.0% |
| !! | ATACCTTCTTGAAGAATTTT+CGG | - | chr7.3:14722621-14722640 | MS.gene23509:intron | 25.0% |
| !! | GTCTAAGTAAATGTTCTTTT+TGG | - | chr7.3:14721666-14721685 | MS.gene23509:intron | 25.0% |
| !! | GTTGCAACTTTTAGTATTTA+TGG | - | chr7.3:14721721-14721740 | MS.gene23509:CDS | 25.0% |
| !! | TAATTTGTATGTTGCTAACT+CGG | - | chr7.3:14720859-14720878 | MS.gene23509:intron | 25.0% |
| !! | TTTGGTTCAACTAAAAAAGT+TGG | + | chr7.3:14722250-14722269 | None:intergenic | 25.0% |
| !!! | ACTGTATTTGCTGAAATTTT+AGG | - | chr7.3:14721357-14721376 | MS.gene23509:intron | 25.0% |
| !!! | ATTTTAGGTTGCATATGTTT+TGG | - | chr7.3:14721372-14721391 | MS.gene23509:intron | 25.0% |
| !!! | TTTTAGGTTGCATATGTTTT+GGG | - | chr7.3:14721373-14721392 | MS.gene23509:intron | 25.0% |
| AAAAGTGACACATTCAGAAA+AGG | + | chr7.3:14720504-14720523 | None:intergenic | 30.0% | |
| AAAGTTAAGCAGCAACATTA+AGG | + | chr7.3:14721302-14721321 | None:intergenic | 30.0% | |
| AACATACAAATTACTCTCTC+TGG | + | chr7.3:14720852-14720871 | None:intergenic | 30.0% | |
| AAGAGATTCATCGAATTTGT+TGG | - | chr7.3:14720343-14720362 | MS.gene23509:intron | 30.0% | |
| AATACATGTTTCATTCTGGA+AGG | + | chr7.3:14719940-14719959 | None:intergenic | 30.0% | |
| ATGCTAGAATTTGAAAGATC+AGG | - | chr7.3:14722691-14722710 | MS.gene23509:CDS | 30.0% | |
| CATTGAACCATTATATTCGT+TGG | - | chr7.3:14721184-14721203 | MS.gene23509:intron | 30.0% | |
| CTGTTGCAGTCAATAATATA+TGG | - | chr7.3:14721547-14721566 | MS.gene23509:CDS | 30.0% | |
| GACAAAAGAACTATGTAAAC+AGG | + | chr7.3:14722576-14722595 | None:intergenic | 30.0% | |
| GACTAAACAGACTATATAAC+AGG | + | chr7.3:14722104-14722123 | None:intergenic | 30.0% | |
| GCTAAGTTGTTTATCCAAAT+AGG | - | chr7.3:14720171-14720190 | MS.gene23509:intron | 30.0% | |
| GCTGTAAAATTGAAGAGAAA+AGG | + | chr7.3:14719852-14719871 | None:intergenic | 30.0% | |
| GTAGATACTTCTTTGTGATT+TGG | - | chr7.3:14722078-14722097 | MS.gene23509:CDS | 30.0% | |
| TCAGAAAAGGAAGAAATAGA+AGG | + | chr7.3:14720491-14720510 | None:intergenic | 30.0% | |
| TGATTGATTAAGTCCCTATT+TGG | + | chr7.3:14720257-14720276 | None:intergenic | 30.0% | |
| TGCTAGAATTTGAAAGATCA+GGG | - | chr7.3:14722692-14722711 | MS.gene23509:CDS | 30.0% | |
| TGGTTCAACTAAAAAAGTTG+GGG | + | chr7.3:14722248-14722267 | None:intergenic | 30.0% | |
| TGTTTGTTTCAATCTTGCTT+AGG | - | chr7.3:14720551-14720570 | MS.gene23509:intron | 30.0% | |
| TTCCAATACATGTTTCATTC+TGG | + | chr7.3:14719944-14719963 | None:intergenic | 30.0% | |
| TTCCAGAATGAAACATGTAT+TGG | - | chr7.3:14719939-14719958 | MS.gene23509:intron | 30.0% | |
| ! | ACACTACTATCTTTTTCTCT+TGG | - | chr7.3:14722781-14722800 | MS.gene23509:CDS | 30.0% |
| ! | ATGTTTCAATAAAGCACTCT+TGG | + | chr7.3:14721018-14721037 | None:intergenic | 30.0% |
| ! | GCATTTAAAACCACATACTA+TGG | - | chr7.3:14721511-14721530 | MS.gene23509:CDS | 30.0% |
| ! | GTTTAAAAGTACGAACGATA+TGG | + | chr7.3:14721165-14721184 | None:intergenic | 30.0% |
| ! | TATATTATTGACTGCAACAG+AGG | + | chr7.3:14721547-14721566 | None:intergenic | 30.0% |
| ! | TTTTATGTTAAGGCCCTATT+TGG | + | chr7.3:14720128-14720147 | None:intergenic | 30.0% |
| !! | AAAGTTTTATGCTTCTTGGT+TGG | - | chr7.3:14721875-14721894 | MS.gene23509:CDS | 30.0% |
| !! | CTTCTATTTAATTTTGCCTC+TGG | - | chr7.3:14722445-14722464 | MS.gene23509:intron | 30.0% |
| !!! | TTCTCTTTTGAAGCATAGTT+TGG | - | chr7.3:14720614-14720633 | MS.gene23509:intron | 30.0% |
| AAAACATCAGGTCAATCTAG+AGG | - | chr7.3:14721136-14721155 | MS.gene23509:intron | 35.0% | |
| AAAATCTTCAGCAAGTACCA+AGG | + | chr7.3:14722737-14722756 | None:intergenic | 35.0% | |
| AAACATCAGGTCAATCTAGA+GGG | - | chr7.3:14721137-14721156 | MS.gene23509:intron | 35.0% | |
| AAAGGGAGTAACCTAGAATA+AGG | + | chr7.3:14719828-14719847 | None:intergenic | 35.0% | |
| AAGGGAGTAACCTAGAATAA+GGG | + | chr7.3:14719827-14719846 | None:intergenic | 35.0% | |
| AATACCTGCAATTGAACCAA+GGG | + | chr7.3:14721491-14721510 | None:intergenic | 35.0% | |
| ACTTCACATGAGAAAACATC+AGG | - | chr7.3:14721124-14721143 | MS.gene23509:intron | 35.0% | |
| AGCGTCTAACTATTAGTTCA+TGG | - | chr7.3:14721932-14721951 | MS.gene23509:intron | 35.0% | |
| ATTCGTTGGTCCATGTAAAA+AGG | + | chr7.3:14722011-14722030 | None:intergenic | 35.0% | |
| GAAGAAATAGAAGGCTACTA+CGG | + | chr7.3:14720482-14720501 | None:intergenic | 35.0% | |
| GCGTCTAACTATTAGTTCAT+GGG | - | chr7.3:14721933-14721952 | MS.gene23509:intron | 35.0% | |
| GGAAAGATCATTAAGAACTG+AGG | + | chr7.3:14720429-14720448 | None:intergenic | 35.0% | |
| TAATACGTGACAAAGCCTTA+TGG | + | chr7.3:14722035-14722054 | None:intergenic | 35.0% | |
| TACTTCTCGATGAGGAAAAA+GGG | - | chr7.3:14720907-14720926 | MS.gene23509:intron | 35.0% | |
| TCACATGATTCCATAGTATG+TGG | + | chr7.3:14721524-14721543 | None:intergenic | 35.0% | |
| TGACTCAGTTCATATCTGTA+TGG | - | chr7.3:14721744-14721763 | MS.gene23509:CDS | 35.0% | |
| TGAGCAGTTCAACTTAACTT+AGG | - | chr7.3:14721699-14721718 | MS.gene23509:intron | 35.0% | |
| TTAAGAACTGAGGTTAATGC+AGG | + | chr7.3:14720419-14720438 | None:intergenic | 35.0% | |
| TTACTTCTCGATGAGGAAAA+AGG | - | chr7.3:14720906-14720925 | MS.gene23509:intron | 35.0% | |
| TTATGCTTCTTGGTTGGATT+TGG | - | chr7.3:14721881-14721900 | MS.gene23509:CDS | 35.0% | |
| TTCTGCTCCAACGAATATAA+TGG | + | chr7.3:14721194-14721213 | None:intergenic | 35.0% | |
| TTGTATGAATTGCACGTAAG+TGG | - | chr7.3:14721093-14721112 | MS.gene23509:CDS | 35.0% | |
| TTGTTTATAGTTCATTGCGG+AGG | - | chr7.3:14720023-14720042 | MS.gene23509:intron | 35.0% | |
| ! | AACCAGCTTTTCTTTCTCTT+TGG | - | chr7.3:14720313-14720332 | MS.gene23509:intron | 35.0% |
| ! | CTTCAAGAAGGTATACACTT+TGG | + | chr7.3:14722615-14722634 | None:intergenic | 35.0% |
| ! | CTTTTTGCACTTCGAAATGA+TGG | - | chr7.3:14720951-14720970 | MS.gene23509:intron | 35.0% |
| ! | GAGTGCTTTATTGAAACATG+AGG | - | chr7.3:14721019-14721038 | MS.gene23509:CDS | 35.0% |
| ! | TTGGTCAACTAAGGTTTGTT+TGG | - | chr7.3:14720796-14720815 | MS.gene23509:intron | 35.0% |
| !! | ATTTGGTCGACTCTTTTTAC+TGG | - | chr7.3:14722154-14722173 | MS.gene23509:CDS | 35.0% |
| !!! | CATATCTGTATGGTTTTGAC+TGG | - | chr7.3:14721754-14721773 | MS.gene23509:CDS | 35.0% |
| !!! | GTTGGTTCTACCTTTTTACA+TGG | - | chr7.3:14721998-14722017 | MS.gene23509:intron | 35.0% |
| AACTGAGGTTAATGCAGGTA+TGG | + | chr7.3:14720414-14720433 | None:intergenic | 40.0% | |
| AAGATCAGGGAAATCGTTTG+AGG | - | chr7.3:14722705-14722724 | MS.gene23509:CDS | 40.0% | |
| ACGAAGCTGCATTTGCATTA+GGG | - | chr7.3:14720369-14720388 | MS.gene23509:intron | 40.0% | |
| AGATGTGAATGAGCATCCAA+TGG | - | chr7.3:14721444-14721463 | MS.gene23509:intron | 40.0% | |
| AGTCAAACTTGGGTAGCATT+TGG | + | chr7.3:14722335-14722354 | None:intergenic | 40.0% | |
| ATGGACCAACGAATACCATA+AGG | - | chr7.3:14722017-14722036 | MS.gene23509:intron | 40.0% | |
| CAATACCTGCAATTGAACCA+AGG | + | chr7.3:14721492-14721511 | None:intergenic | 40.0% | |
| CTGCCGAAAATTCTTCAAGA+AGG | + | chr7.3:14722627-14722646 | None:intergenic | 40.0% | |
| GACAATCTTTCTGTTCTCGT+TGG | - | chr7.3:14721980-14721999 | MS.gene23509:intron | 40.0% | |
| GACTTAAACGGAGAAATAGC+AGG | + | chr7.3:14720738-14720757 | None:intergenic | 40.0% | |
| GCAGGATCAACAGACTTAAA+CGG | + | chr7.3:14720750-14720769 | None:intergenic | 40.0% | |
| GTTCTTCAGTTGGTCAACTA+AGG | - | chr7.3:14720787-14720806 | MS.gene23509:intron | 40.0% | |
| TAGGGATTTACTTCTCGATG+AGG | - | chr7.3:14720899-14720918 | MS.gene23509:intron | 40.0% | |
| TGACAACTTTGTGCAACAAG+AGG | + | chr7.3:14722658-14722677 | None:intergenic | 40.0% | |
| TGCCAAAGAGAAAGAAAAGC+TGG | + | chr7.3:14720318-14720337 | None:intergenic | 40.0% | |
| TTTGCACTTCGAAATGATGG+TGG | - | chr7.3:14720954-14720973 | MS.gene23509:intron | 40.0% | |
| ! | AAGCAGCTTTGTCTTGCAAT+TGG | + | chr7.3:14721399-14721418 | None:intergenic | 40.0% |
| ! | ATCGTTTGAGGTATACACCT+TGG | - | chr7.3:14722717-14722736 | MS.gene23509:CDS | 40.0% |
| ! | CAAAGCCTTATGGTATTCGT+TGG | + | chr7.3:14722025-14722044 | None:intergenic | 40.0% |
| ! | TCGCTGATTAAGTCCCTATT+TGG | + | chr7.3:14720188-14720207 | None:intergenic | 40.0% |
| !! | AAAAGTAGAGGTGTTGGAGA+AGG | - | chr7.3:14721819-14721838 | MS.gene23509:CDS | 40.0% |
| !! | GCTGCTATTGTTGATTCCTT+GGG | - | chr7.3:14720990-14721009 | MS.gene23509:intron | 40.0% |
| !! | TGCTGCTATTGTTGATTCCT+TGG | - | chr7.3:14720989-14721008 | MS.gene23509:intron | 40.0% |
| ACCAACTGAAGAACAAGAGC+TGG | + | chr7.3:14720781-14720800 | None:intergenic | 45.0% | |
| ACTACCTCATGGCGAACAAT+GGG | + | chr7.3:14720458-14720477 | None:intergenic | 45.0% | |
| CACGAAGCTGCATTTGCATT+AGG | - | chr7.3:14720368-14720387 | MS.gene23509:intron | 45.0% | |
| GCATCCAATGGTTAGACATG+AGG | - | chr7.3:14721456-14721475 | MS.gene23509:intron | 45.0% | |
| GGAGTAACCTAGAATAAGGG+CGG | + | chr7.3:14719824-14719843 | None:intergenic | 45.0% | |
| GTCTGTTTAGTCTCTGCATC+TGG | - | chr7.3:14722112-14722131 | MS.gene23509:CDS | 45.0% | |
| TACTACCTCATGGCGAACAA+TGG | + | chr7.3:14720459-14720478 | None:intergenic | 45.0% | |
| TTCTCTCTTCGCAACCTCAA+AGG | - | chr7.3:14719784-14719803 | MS.gene23509:intron | 45.0% | |
| TTTGTGCAACAAGAGGCTCT+GGG | + | chr7.3:14722651-14722670 | None:intergenic | 45.0% | |
| ! | TAAAGCACTCTTGGAACCCA+AGG | + | chr7.3:14721009-14721028 | None:intergenic | 45.0% |
| !!! | GTTTTAAATTAATAATATTA+GGG | - | chr7.3:14720881-14720900 | MS.gene23509:intron | 5.0% |
| AAAGTTGGGGAAGCTGCCAA+AGG | + | chr7.3:14722235-14722254 | None:intergenic | 50.0% | |
| ACTGAAGAACAAGAGCTGGC+CGG | + | chr7.3:14720777-14720796 | None:intergenic | 50.0% | |
| ATGGCGAACAATGGGATGCA+AGG | + | chr7.3:14720450-14720469 | None:intergenic | 50.0% | |
| CAATTGGAGGACGCATGAAC+AGG | + | chr7.3:14722815-14722834 | None:intergenic | 50.0% | |
| CTGTCATGTGACTCTACCAG+AGG | + | chr7.3:14722464-14722483 | None:intergenic | 50.0% | |
| CTTTGTGCAACAAGAGGCTC+TGG | + | chr7.3:14722652-14722671 | None:intergenic | 50.0% | |
| GAAGCCCTTGGTTCAATTGC+AGG | - | chr7.3:14721484-14721503 | MS.gene23509:CDS | 50.0% | |
| GCAGCCTCATGTCTAACCAT+TGG | + | chr7.3:14721463-14721482 | None:intergenic | 50.0% | |
| GCCAGCTCTTGTTCTTCAGT+TGG | - | chr7.3:14720777-14720796 | MS.gene23509:intron | 50.0% | |
| GCTACTACGGTACTACCTCA+TGG | + | chr7.3:14720469-14720488 | None:intergenic | 50.0% | |
| GGATTCTGATCCAGCTCAAG+AGG | - | chr7.3:14720635-14720654 | MS.gene23509:intron | 50.0% | |
| GTTTCTCGAACCTCTTGAGC+TGG | + | chr7.3:14720648-14720667 | None:intergenic | 50.0% | |
| !! | GAAGAGTGCTCTGAAGCGTT+CGG | + | chr7.3:14719767-14719786 | None:intergenic | 50.0% |
| AGTCCAACAGCAACTCGCAC+AGG | + | chr7.3:14719729-14719748 | None:intergenic | 55.0% | |
| CGCTTCGTGCTCATCAGAGA+TGG | - | chr7.3:14719696-14719715 | MS.gene23509:intron | 55.0% | |
| CTAGAATAAGGGCGGTGCGA+GGG | + | chr7.3:14719816-14719835 | None:intergenic | 55.0% | |
| GCATCCCATTGTTCGCCATG+AGG | - | chr7.3:14720451-14720470 | MS.gene23509:intron | 55.0% | |
| GTCTGTTGATCCTGCAGCAC+CGG | - | chr7.3:14720755-14720774 | MS.gene23509:intron | 55.0% | |
| GTTCCTGTGCGAGTTGCTGT+TGG | - | chr7.3:14719723-14719742 | MS.gene23509:intron | 55.0% | |
| TAGAATAAGGGCGGTGCGAG+GGG | + | chr7.3:14719815-14719834 | None:intergenic | 55.0% | |
| ! | GAAGCGTTCGGAGATTGGCT+GGG | + | chr7.3:14719755-14719774 | None:intergenic | 55.0% |
| ! | GCTGAAGCACTAGGCGCTAT+TGG | - | chr7.3:14720576-14720595 | MS.gene23509:intron | 55.0% |
| ! | GCTTAGGCAGCTGAAGCACT+AGG | - | chr7.3:14720567-14720586 | MS.gene23509:intron | 55.0% |
| ! | TGAAGCGTTCGGAGATTGGC+TGG | + | chr7.3:14719756-14719775 | None:intergenic | 55.0% |
| !! | GCTCTGAAGCGTTCGGAGAT+TGG | + | chr7.3:14719760-14719779 | None:intergenic | 55.0% |
| CATGAGGCTGCTGAAGCCCT+TGG | - | chr7.3:14721472-14721491 | MS.gene23509:CDS | 60.0% | |
| CCTAGAATAAGGGCGGTGCG+AGG | + | chr7.3:14719817-14719836 | None:intergenic | 60.0% | |
| CCTCGCACCGCCCTTATTCT+AGG | - | chr7.3:14719814-14719833 | MS.gene23509:CDS | 60.0% | |
| AATAAGGGCGGTGCGAGGGG+CGG | + | chr7.3:14719812-14719831 | None:intergenic | 65.0% | |
| ATAAGGGCGGTGCGAGGGGC+GGG | + | chr7.3:14719811-14719830 | None:intergenic | 70.0% | |
| !! | CAAGAGCTGGCCGGTGCTGC+AGG | + | chr7.3:14720768-14720787 | None:intergenic | 70.0% |
| TAAGGGCGGTGCGAGGGGCG+GGG | + | chr7.3:14719810-14719829 | None:intergenic | 75.0% | |
| TGCGAGGGGCGGGGCCTTTG+AGG | + | chr7.3:14719801-14719820 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 14719670 | 14722842 | 14719670 | ID=MS.gene23509 |
| chr7.3 | mRNA | 14719670 | 14722842 | 14719670 | ID=MS.gene23509.t1;Parent=MS.gene23509 |
| chr7.3 | exon | 14722677 | 14722842 | 14722677 | ID=MS.gene23509.t1.exon1;Parent=MS.gene23509.t1 |
| chr7.3 | CDS | 14722677 | 14722842 | 14722677 | ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1 |
| chr7.3 | exon | 14722040 | 14722173 | 14722040 | ID=MS.gene23509.t1.exon2;Parent=MS.gene23509.t1 |
| chr7.3 | CDS | 14722040 | 14722173 | 14722040 | ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1 |
| chr7.3 | exon | 14721704 | 14721939 | 14721704 | ID=MS.gene23509.t1.exon3;Parent=MS.gene23509.t1 |
| chr7.3 | CDS | 14721704 | 14721939 | 14721704 | ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1 |
| chr7.3 | exon | 14721472 | 14721610 | 14721472 | ID=MS.gene23509.t1.exon4;Parent=MS.gene23509.t1 |
| chr7.3 | CDS | 14721472 | 14721610 | 14721472 | ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1 |
| chr7.3 | exon | 14721007 | 14721133 | 14721007 | ID=MS.gene23509.t1.exon5;Parent=MS.gene23509.t1 |
| chr7.3 | CDS | 14721007 | 14721133 | 14721007 | ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1 |
| chr7.3 | exon | 14719786 | 14719904 | 14719786 | ID=MS.gene23509.t1.exon6;Parent=MS.gene23509.t1 |
| chr7.3 | CDS | 14719786 | 14719904 | 14719786 | ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1 |
| chr7.3 | exon | 14719670 | 14719702 | 14719670 | ID=MS.gene23509.t1.exon7;Parent=MS.gene23509.t1 |
| chr7.3 | CDS | 14719670 | 14719702 | 14719670 | ID=cds.MS.gene23509.t1;Parent=MS.gene23509.t1 |
| Gene Sequence |
| Protein sequence |
