Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23988.t1 | XP_013468437.1 | 89.7 | 890 | 92 | 0 | 1 | 890 | 1 | 890 | 0.00E+00 | 1637.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23988.t1 | Q9SSE9 | 45.6 | 848 | 348 | 10 | 89 | 885 | 112 | 897 | 9.3e-204 | 711.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23988.t1 | A0A072VKD6 | 89.7 | 890 | 92 | 0 | 1 | 890 | 1 | 890 | 0.0e+00 | 1637.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23988.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene23988 | 0.811543 | 6.64E-51 | -1.69E-46 |
| MS.gene049255 | MS.gene23988 | 0.803928 | 2.76E-49 | -1.69E-46 |
| MS.gene049341 | MS.gene23988 | 0.819479 | 1.14E-52 | -1.69E-46 |
| MS.gene049821 | MS.gene23988 | 0.818985 | 1.47E-52 | -1.69E-46 |
| MS.gene049824 | MS.gene23988 | 0.851494 | 8.56E-61 | -1.69E-46 |
| MS.gene049825 | MS.gene23988 | 0.821509 | 3.89E-53 | -1.69E-46 |
| MS.gene050020 | MS.gene23988 | 0.813531 | 2.44E-51 | -1.69E-46 |
| MS.gene050194 | MS.gene23988 | 0.812593 | 3.92E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene23988 | 0.827566 | 1.46E-54 | -1.69E-46 |
| MS.gene05157 | MS.gene23988 | 0.804993 | 1.65E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene23988 | 0.806511 | 7.94E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene23988 | 0.813969 | 1.96E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene23988 | 0.814398 | 1.57E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene23988 | 0.829493 | 4.99E-55 | -1.69E-46 |
| MS.gene052665 | MS.gene23988 | 0.827512 | 1.50E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene23988 | 0.821899 | 3.16E-53 | -1.69E-46 |
| MS.gene053122 | MS.gene23988 | 0.835639 | 1.49E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene23988 | 0.824907 | 6.26E-54 | -1.69E-46 |
| MS.gene053563 | MS.gene23988 | 0.822841 | 1.91E-53 | -1.69E-46 |
| MS.gene053599 | MS.gene23988 | 0.816286 | 5.98E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene23988 | 0.826025 | 3.40E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene23988 | 0.802969 | 4.36E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene23988 | 0.815918 | 7.23E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene23988 | 0.802679 | 5.00E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene23988 | 0.810396 | 1.18E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene23988 | 0.820608 | 6.27E-53 | -1.69E-46 |
| MS.gene055580 | MS.gene23988 | -0.834476 | 2.93E-56 | -1.69E-46 |
| MS.gene055808 | MS.gene23988 | 0.821242 | 4.48E-53 | -1.69E-46 |
| MS.gene055890 | MS.gene23988 | 0.811932 | 5.47E-51 | -1.69E-46 |
| MS.gene055891 | MS.gene23988 | 0.814652 | 1.38E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene23988 | -0.821905 | 3.15E-53 | -1.69E-46 |
| MS.gene057705 | MS.gene23988 | 0.827714 | 1.34E-54 | -1.69E-46 |
| MS.gene058216 | MS.gene23988 | 0.828619 | 8.13E-55 | -1.69E-46 |
| MS.gene058852 | MS.gene23988 | 0.819153 | 1.35E-52 | -1.69E-46 |
| MS.gene05978 | MS.gene23988 | 0.85098 | 1.20E-60 | -1.69E-46 |
| MS.gene06001 | MS.gene23988 | 0.818795 | 1.63E-52 | -1.69E-46 |
| MS.gene060194 | MS.gene23988 | 0.824306 | 8.67E-54 | -1.69E-46 |
| MS.gene060429 | MS.gene23988 | 0.815264 | 1.01E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene23988 | 0.863881 | 1.81E-64 | -1.69E-46 |
| MS.gene060603 | MS.gene23988 | 0.804381 | 2.22E-49 | -1.69E-46 |
| MS.gene061176 | MS.gene23988 | 0.807727 | 4.39E-50 | -1.69E-46 |
| MS.gene061177 | MS.gene23988 | 0.806958 | 6.39E-50 | -1.69E-46 |
| MS.gene061178 | MS.gene23988 | 0.80768 | 4.49E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23988.t1 | MTR_1g069565 | 93.371 | 890 | 59 | 0 | 1 | 890 | 1 | 890 | 0.0 | 1656 |
| MS.gene23988.t1 | MTR_1g069565 | 86.695 | 947 | 69 | 3 | 1 | 890 | 1 | 947 | 0.0 | 1600 |
| MS.gene23988.t1 | MTR_1g114150 | 79.412 | 782 | 114 | 6 | 119 | 890 | 315 | 1059 | 0.0 | 1272 |
| MS.gene23988.t1 | MTR_1g114130 | 69.933 | 898 | 172 | 8 | 61 | 890 | 180 | 1047 | 0.0 | 1243 |
| MS.gene23988.t1 | MTR_1g114070 | 69.673 | 765 | 187 | 5 | 124 | 888 | 212 | 931 | 0.0 | 1080 |
| MS.gene23988.t1 | MTR_5g065200 | 63.835 | 871 | 226 | 10 | 27 | 883 | 41 | 836 | 0.0 | 1064 |
| MS.gene23988.t1 | MTR_1g114150 | 77.190 | 662 | 104 | 6 | 119 | 770 | 315 | 939 | 0.0 | 1039 |
| MS.gene23988.t1 | MTR_5g047620 | 69.265 | 680 | 186 | 8 | 207 | 882 | 138 | 798 | 0.0 | 941 |
| MS.gene23988.t1 | MTR_0020s0100 | 64.103 | 663 | 182 | 10 | 207 | 864 | 80 | 691 | 0.0 | 829 |
| MS.gene23988.t1 | MTR_7g117445 | 42.654 | 912 | 421 | 24 | 65 | 888 | 36 | 933 | 0.0 | 665 |
| MS.gene23988.t1 | MTR_7g117445 | 42.810 | 904 | 415 | 24 | 65 | 880 | 36 | 925 | 0.0 | 664 |
| MS.gene23988.t1 | MTR_7g117445 | 42.810 | 904 | 415 | 24 | 65 | 880 | 36 | 925 | 0.0 | 663 |
| MS.gene23988.t1 | MTR_4g132540 | 47.122 | 747 | 334 | 15 | 144 | 879 | 168 | 864 | 0.0 | 639 |
| MS.gene23988.t1 | MTR_2g024270 | 47.568 | 740 | 310 | 13 | 143 | 879 | 153 | 817 | 0.0 | 620 |
| MS.gene23988.t1 | MTR_2g024140 | 45.087 | 743 | 312 | 12 | 143 | 879 | 33 | 685 | 0.0 | 591 |
| MS.gene23988.t1 | MTR_7g117445 | 41.351 | 844 | 393 | 24 | 65 | 820 | 36 | 865 | 0.0 | 585 |
| MS.gene23988.t1 | MTR_1g083120 | 37.367 | 752 | 401 | 20 | 143 | 880 | 197 | 892 | 5.78e-148 | 461 |
| MS.gene23988.t1 | MTR_1g083120 | 37.367 | 752 | 401 | 20 | 143 | 880 | 214 | 909 | 9.22e-148 | 461 |
| MS.gene23988.t1 | MTR_1g008060 | 45.693 | 534 | 253 | 11 | 140 | 669 | 857 | 1357 | 3.26e-133 | 437 |
| MS.gene23988.t1 | MTR_1g008060 | 72.059 | 136 | 38 | 0 | 735 | 870 | 1542 | 1677 | 2.05e-58 | 218 |
| MS.gene23988.t1 | MTR_1g008060 | 45.693 | 534 | 253 | 11 | 140 | 669 | 866 | 1366 | 4.02e-133 | 437 |
| MS.gene23988.t1 | MTR_1g008060 | 72.059 | 136 | 38 | 0 | 735 | 870 | 1551 | 1686 | 1.95e-58 | 218 |
| MS.gene23988.t1 | MTR_2g011630 | 34.536 | 776 | 450 | 15 | 144 | 884 | 207 | 959 | 5.17e-131 | 417 |
| MS.gene23988.t1 | MTR_1g083120 | 37.085 | 693 | 366 | 20 | 144 | 822 | 198 | 834 | 8.89e-130 | 410 |
| MS.gene23988.t1 | MTR_1g083120 | 37.085 | 693 | 366 | 20 | 144 | 822 | 198 | 834 | 1.10e-129 | 410 |
| MS.gene23988.t1 | MTR_2g011630 | 34.343 | 693 | 399 | 12 | 226 | 884 | 45 | 715 | 5.64e-119 | 378 |
| MS.gene23988.t1 | MTR_2g011630 | 34.343 | 693 | 399 | 12 | 226 | 884 | 77 | 747 | 1.97e-118 | 378 |
| MS.gene23988.t1 | MTR_8g062940 | 50.000 | 398 | 161 | 6 | 113 | 510 | 8 | 367 | 4.10e-116 | 358 |
| MS.gene23988.t1 | MTR_2g024240 | 53.086 | 324 | 103 | 3 | 521 | 844 | 114 | 388 | 5.65e-107 | 336 |
| MS.gene23988.t1 | MTR_4g091520 | 37.077 | 561 | 296 | 14 | 367 | 880 | 727 | 1277 | 8.23e-98 | 333 |
| MS.gene23988.t1 | MTR_4g091520 | 35.556 | 180 | 106 | 4 | 139 | 309 | 255 | 433 | 3.11e-27 | 120 |
| MS.gene23988.t1 | MTR_4g091520 | 34.105 | 475 | 256 | 14 | 367 | 794 | 657 | 1121 | 4.07e-62 | 229 |
| MS.gene23988.t1 | MTR_4g091520 | 35.556 | 180 | 106 | 4 | 139 | 309 | 255 | 433 | 2.28e-27 | 120 |
| MS.gene23988.t1 | MTR_4g091520 | 34.105 | 475 | 256 | 14 | 367 | 794 | 727 | 1191 | 5.65e-62 | 229 |
| MS.gene23988.t1 | MTR_4g091520 | 35.556 | 180 | 106 | 4 | 139 | 309 | 255 | 433 | 2.91e-27 | 120 |
| MS.gene23988.t1 | MTR_4g091520 | 34.105 | 475 | 256 | 14 | 367 | 794 | 692 | 1156 | 6.12e-62 | 228 |
| MS.gene23988.t1 | MTR_4g091520 | 35.556 | 180 | 106 | 4 | 139 | 309 | 255 | 433 | 2.34e-27 | 120 |
| MS.gene23988.t1 | MTR_8g013920 | 70.414 | 169 | 31 | 3 | 546 | 714 | 40 | 189 | 1.85e-61 | 207 |
| MS.gene23988.t1 | MTR_0295s0020 | 61.585 | 164 | 63 | 0 | 512 | 675 | 12 | 175 | 1.78e-59 | 201 |
| MS.gene23988.t1 | MTR_8g465700 | 52.247 | 178 | 81 | 1 | 456 | 633 | 4 | 177 | 1.08e-55 | 194 |
| MS.gene23988.t1 | MTR_8g465720 | 77.528 | 89 | 19 | 1 | 734 | 822 | 52 | 139 | 1.82e-42 | 152 |
| MS.gene23988.t1 | MTR_3g080750 | 69.841 | 63 | 19 | 0 | 633 | 695 | 86 | 148 | 9.53e-21 | 90.1 |
| MS.gene23988.t1 | MTR_6g051930 | 89.655 | 29 | 3 | 0 | 275 | 303 | 45 | 73 | 6.78e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23988.t1 | AT3G07610 | 43.492 | 922 | 399 | 11 | 27 | 885 | 35 | 897 | 0.0 | 713 |
| MS.gene23988.t1 | AT3G07610 | 42.295 | 941 | 405 | 12 | 27 | 885 | 35 | 919 | 0.0 | 692 |
| MS.gene23988.t1 | AT1G11950 | 48.988 | 741 | 308 | 13 | 144 | 879 | 193 | 868 | 0.0 | 688 |
| MS.gene23988.t1 | AT1G11950 | 48.988 | 741 | 308 | 13 | 144 | 879 | 193 | 868 | 0.0 | 688 |
| MS.gene23988.t1 | AT1G62310 | 49.108 | 729 | 313 | 12 | 144 | 868 | 209 | 883 | 0.0 | 681 |
| MS.gene23988.t1 | AT4G00990 | 43.790 | 781 | 367 | 16 | 142 | 879 | 78 | 829 | 0.0 | 605 |
| MS.gene23988.t1 | AT1G11950 | 46.736 | 674 | 289 | 13 | 144 | 812 | 193 | 801 | 0.0 | 585 |
| MS.gene23988.t1 | AT4G00990 | 42.603 | 730 | 347 | 16 | 142 | 828 | 78 | 778 | 1.14e-179 | 538 |
| MS.gene23988.t1 | AT4G00990 | 42.936 | 722 | 340 | 16 | 142 | 820 | 78 | 770 | 1.82e-178 | 535 |
| MS.gene23988.t1 | AT3G07610 | 40.237 | 676 | 321 | 9 | 27 | 639 | 35 | 690 | 3.62e-153 | 469 |
| MS.gene23988.t1 | AT1G09060 | 30.645 | 868 | 497 | 21 | 36 | 880 | 106 | 891 | 3.70e-116 | 377 |
| MS.gene23988.t1 | AT1G09060 | 30.645 | 868 | 497 | 21 | 36 | 880 | 106 | 891 | 3.70e-116 | 377 |
| MS.gene23988.t1 | AT1G09060 | 30.645 | 868 | 497 | 21 | 36 | 880 | 120 | 905 | 5.17e-116 | 377 |
| MS.gene23988.t1 | AT1G09060 | 30.645 | 868 | 497 | 21 | 36 | 880 | 120 | 905 | 5.17e-116 | 377 |
| MS.gene23988.t1 | AT4G21430 | 28.791 | 521 | 320 | 9 | 140 | 657 | 223 | 695 | 1.16e-59 | 220 |
| MS.gene23988.t1 | AT4G21430 | 43.791 | 153 | 85 | 1 | 734 | 886 | 768 | 919 | 7.28e-35 | 144 |
Find 214 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGGTCATTGTTGGTTTC+TGG | 0.066287 | 1.3:+48980289 | None:intergenic |
| TTTAAATATTCTTCCAATTT+AGG | 0.124269 | 1.3:+48977012 | None:intergenic |
| AGTACATTGCTGACAATTAT+AGG | 0.182829 | 1.3:+48979142 | None:intergenic |
| TGATAAAGAAAATAGTTTAT+TGG | 0.211724 | 1.3:-48977091 | MS.gene23988:CDS |
| TTGCTCGTATGAAGCCTTTA+TGG | 0.217000 | 1.3:+48977188 | None:intergenic |
| GCTATGGTTTCTTGATTATC+AGG | 0.232645 | 1.3:+48981820 | None:intergenic |
| AATTTGCACCAATTCTTTAC+TGG | 0.236831 | 1.3:-48978195 | MS.gene23988:CDS |
| GAGAGAGGATGTACCTAAAT+TGG | 0.270507 | 1.3:-48977025 | MS.gene23988:CDS |
| GTCCTTATTGGTCTGTAATA+AGG | 0.273383 | 1.3:-48981367 | MS.gene23988:CDS |
| TCTGCAGACTTGTGATTTAC+TGG | 0.286546 | 1.3:+48975392 | None:intergenic |
| TTTCTGCCACGTTTCTTTGC+CGG | 0.291268 | 1.3:+48981760 | None:intergenic |
| AGTGTTCGATTTGTGGAAAA+TGG | 0.293306 | 1.3:-48977162 | MS.gene23988:CDS |
| TGAAGTGAAGCTGGATTCTA+AGG | 0.294563 | 1.3:-48977328 | MS.gene23988:CDS |
| ACAGCATCCTGGACATTTCT+TGG | 0.294851 | 1.3:+48980458 | None:intergenic |
| GATTGAAGATGTGTCCTTAT+TGG | 0.294904 | 1.3:-48981379 | MS.gene23988:CDS |
| TCACAATCATCATCGGCTTT+TGG | 0.295247 | 1.3:+48979454 | None:intergenic |
| CTTCGTGGTGGGAAGCTTCT+AGG | 0.295572 | 1.3:-48979652 | MS.gene23988:CDS |
| TCTGGAACTGAAGAAGATTA+AGG | 0.298549 | 1.3:-48981626 | MS.gene23988:CDS |
| CTCGCCTGGACTGGCTTAAT+TGG | 0.302310 | 1.3:-48978161 | MS.gene23988:CDS |
| TGTTGCTGTTCAATGCATTC+AGG | 0.310113 | 1.3:+48981523 | None:intergenic |
| TATGTTATACCTTCAGATTT+CGG | 0.328391 | 1.3:+48975914 | None:intergenic |
| TAATTCATCTTCTTCCATAA+AGG | 0.328727 | 1.3:-48977202 | MS.gene23988:CDS |
| GCAAAATAGTGTTCGATTTG+TGG | 0.335906 | 1.3:-48977169 | MS.gene23988:CDS |
| AAGAAAATAGTTTATTGGTT+GGG | 0.336358 | 1.3:-48977086 | MS.gene23988:CDS |
| TTTGTCTCTCCTGAAAATAT+TGG | 0.339057 | 1.3:-48975452 | MS.gene23988:CDS |
| TCTGGCTGTAAAACATCTTT+AGG | 0.339519 | 1.3:+48977991 | None:intergenic |
| ATTATCAAGCATGTCAATCT+TGG | 0.359732 | 1.3:+48977221 | None:intergenic |
| AGAAGCATTTCAGAGAGTTC+AGG | 0.360974 | 1.3:-48976990 | MS.gene23988:CDS |
| AACGGAGAAGGAAGCCGAAA+AGG | 0.363667 | 1.3:-48981731 | MS.gene23988:CDS |
| TTATCAACTTCTTTGAGCTC+TGG | 0.364253 | 1.3:+48977108 | None:intergenic |
| CTTTCCTCAAATAAATTAGA+AGG | 0.368022 | 1.3:+48978108 | None:intergenic |
| AAGAGGCTTAAGGAGGAGTA+TGG | 0.382059 | 1.3:-48976109 | MS.gene23988:intron |
| ATTCTTTAGACGGTGCTCTC+TGG | 0.384591 | 1.3:-48977059 | MS.gene23988:CDS |
| AGAAAATAGTTTATTGGTTG+GGG | 0.387608 | 1.3:-48977085 | MS.gene23988:CDS |
| TATGGATTTGCTCAGGAGCT+TGG | 0.388333 | 1.3:-48977943 | MS.gene23988:CDS |
| GTGCTCTCTGGGATATCTTT+CGG | 0.394357 | 1.3:-48977047 | MS.gene23988:CDS |
| AACAGATGTGGAGGAGGATC+TGG | 0.398883 | 1.3:-48981644 | MS.gene23988:CDS |
| GGGAGCTACATGGTGATAAT+CGG | 0.399614 | 1.3:-48977254 | MS.gene23988:CDS |
| GCCTCCTTCTAATTTATTTG+AGG | 0.400880 | 1.3:-48978112 | MS.gene23988:CDS |
| ATTTGCTCAGGAGCTTGGGC+GGG | 0.402390 | 1.3:-48977938 | MS.gene23988:CDS |
| CAAGTCTGCAGAGGACAAAT+TGG | 0.404949 | 1.3:-48975381 | MS.gene23988:CDS |
| TGTGAAAACTATTGATTGCT+TGG | 0.405542 | 1.3:-48979029 | MS.gene23988:CDS |
| ATACCTTCAGATTTCGGACT+TGG | 0.410789 | 1.3:+48975920 | None:intergenic |
| TTCAATGGCACTGGAGCAAA+GGG | 0.413215 | 1.3:-48979168 | MS.gene23988:CDS |
| CTCAACCTCATGGTCATTGT+TGG | 0.418130 | 1.3:+48980282 | None:intergenic |
| TTTGCTCAGGAGCTTGGGCG+GGG | 0.418489 | 1.3:-48977937 | MS.gene23988:CDS |
| ATGGATTTGCTCAGGAGCTT+GGG | 0.418850 | 1.3:-48977942 | MS.gene23988:CDS |
| TACATACCAACTGTTAATAC+AGG | 0.419767 | 1.3:+48981260 | None:intergenic |
| AATGTACTTGAATGTACATC+AGG | 0.426491 | 1.3:-48979127 | MS.gene23988:CDS |
| GTCCTTATTACAGACCAATA+AGG | 0.427034 | 1.3:+48981365 | None:intergenic |
| TCATCCAATCGTCTTAAATA+CGG | 0.427692 | 1.3:+48980229 | None:intergenic |
| TGGGTACACAAAGGCTCGCC+TGG | 0.428484 | 1.3:-48978175 | MS.gene23988:CDS |
| TCAAATAAAACGTCTGATCA+TGG | 0.431981 | 1.3:+48976146 | None:intergenic |
| CTGGAACTGAAGAAGATTAA+GGG | 0.432265 | 1.3:-48981625 | MS.gene23988:CDS |
| TATGAACTCGGCACAATGAC+GGG | 0.437450 | 1.3:+48978080 | None:intergenic |
| AACAACACAGTTGCTTTCAC+AGG | 0.439858 | 1.3:-48981856 | MS.gene23988:CDS |
| TTCTTTAGACGGTGCTCTCT+GGG | 0.443773 | 1.3:-48977058 | MS.gene23988:CDS |
| GGACTGGCTTAATTGGCCTC+AGG | 0.444813 | 1.3:-48978154 | MS.gene23988:CDS |
| TTGCAATTGCAAAGCATGCT+TGG | 0.446682 | 1.3:-48980430 | MS.gene23988:CDS |
| TTGTGTACCCAGTAAAGAAT+TGG | 0.446939 | 1.3:+48978187 | None:intergenic |
| TCTTGACCATTCACGAATCT+CGG | 0.449180 | 1.3:+48979516 | None:intergenic |
| AATGTACATCAGGTTTAAGC+TGG | 0.453673 | 1.3:-48979117 | MS.gene23988:CDS |
| GATTATCTGCATGGTGGAAA+TGG | 0.456346 | 1.3:-48979586 | MS.gene23988:CDS |
| GACAAAATCAAGTGCAACCT+TGG | 0.456526 | 1.3:+48975469 | None:intergenic |
| TGAGAAGGAGTGAGCGTGCT+AGG | 0.457513 | 1.3:-48981699 | MS.gene23988:CDS |
| ATGTCAGATGCATTCAAAAC+AGG | 0.458193 | 1.3:+48979292 | None:intergenic |
| AGGAAGAAGAAGGTGGCAAT+TGG | 0.459943 | 1.3:-48981592 | MS.gene23988:CDS |
| TGAAATGCACGGAATGCAAC+CGG | 0.461269 | 1.3:-48981299 | MS.gene23988:CDS |
| GAAGTATGCTTCTCAGTTCA+AGG | 0.462341 | 1.3:+48979422 | None:intergenic |
| ACACAAAGGCTCGCCTGGAC+TGG | 0.464280 | 1.3:-48978170 | MS.gene23988:CDS |
| CTTTGTTGCTGCGAGCTTCG+TGG | 0.465758 | 1.3:-48979667 | MS.gene23988:CDS |
| GCTTGATCTGGTCGAGAAGT+TGG | 0.466266 | 1.3:-48974796 | MS.gene23988:CDS |
| ATTTGCACCAATTCTTTACT+GGG | 0.468225 | 1.3:-48978194 | MS.gene23988:CDS |
| AAAGAAAATAGTTTATTGGT+TGG | 0.470270 | 1.3:-48977087 | MS.gene23988:CDS |
| ATTCGTGAATGGTCAAGATC+TGG | 0.470424 | 1.3:-48979511 | MS.gene23988:CDS |
| AGGGTATGCAAAATTTCTTC+CGG | 0.470503 | 1.3:+48981280 | None:intergenic |
| TGTTGATGCTGCCGCTCCTC+CGG | 0.475825 | 1.3:-48981779 | MS.gene23988:CDS |
| TTATCAAGCATGTCAATCTT+GGG | 0.478672 | 1.3:+48977222 | None:intergenic |
| GCCGATGATGATTGTGATCA+TGG | 0.480443 | 1.3:-48979448 | MS.gene23988:CDS |
| TCATATTGCTGAAGTGAAGC+TGG | 0.481347 | 1.3:-48977337 | MS.gene23988:CDS |
| ATGTCCTCCTCTTTCAAGTC+AGG | 0.481667 | 1.3:+48980483 | None:intergenic |
| ACGATTGGATGAAGAACAAA+TGG | 0.482210 | 1.3:-48980218 | MS.gene23988:CDS |
| ACGGAGAAGGAAGCCGAAAA+GGG | 0.482416 | 1.3:-48981730 | MS.gene23988:CDS |
| AGCTTCATCAGGAGCAGCTA+TGG | 0.485026 | 1.3:+48981804 | None:intergenic |
| TGTGATTTACTGGAAGTTTG+CGG | 0.485220 | 1.3:+48975402 | None:intergenic |
| TATTGCTTATGGATTTGCTC+AGG | 0.486399 | 1.3:-48977950 | MS.gene23988:CDS |
| GGTTTCTTGATTATCAGGAA+TGG | 0.486545 | 1.3:+48981825 | None:intergenic |
| CCATTCACGAATCTCGGGTT+GGG | 0.489370 | 1.3:+48979522 | None:intergenic |
| AAGATAAACTCAAACTCGAT+TGG | 0.491141 | 1.3:+48979619 | None:intergenic |
| GATTTGCTCAGGAGCTTGGG+CGG | 0.493090 | 1.3:-48977939 | MS.gene23988:CDS |
| TATGTATGCTATGCTTGATC+TGG | 0.494282 | 1.3:-48974808 | MS.gene23988:CDS |
| TGATGAAATCAATGCTGCTC+AGG | 0.495231 | 1.3:-48981557 | MS.gene23988:CDS |
| TCTTCCGTATTTAAGACGAT+TGG | 0.495391 | 1.3:-48980233 | MS.gene23988:CDS |
| CTTGACCATTCACGAATCTC+GGG | 0.495468 | 1.3:+48979517 | None:intergenic |
| GTAAAAGAAATGACAAGGGC+AGG | 0.498499 | 1.3:-48981326 | MS.gene23988:CDS |
| CAGCTTCTGAACAAAAGTCC+AGG | 0.502730 | 1.3:+48975978 | None:intergenic |
| CCTTCAGATTTCGGACTTGG+TGG | 0.506047 | 1.3:+48975923 | None:intergenic |
| AACAATTAAGCTTCAAGTTG+CGG | 0.506575 | 1.3:-48979350 | MS.gene23988:CDS |
| TGAAGAACAAATGGCTGAGA+AGG | 0.507808 | 1.3:-48980209 | MS.gene23988:CDS |
| GCATCAACAGAAGCTTCATC+AGG | 0.508288 | 1.3:+48981793 | None:intergenic |
| GGAGCTACATGGTGATAATC+GGG | 0.514858 | 1.3:-48977253 | MS.gene23988:CDS |
| TTTCAATGGCACTGGAGCAA+AGG | 0.515097 | 1.3:-48979169 | MS.gene23988:CDS |
| ACCATTCACGAATCTCGGGT+TGG | 0.516372 | 1.3:+48979521 | None:intergenic |
| GCTCCCTCTTGTCTTGCTCA+AGG | 0.519343 | 1.3:+48977271 | None:intergenic |
| GACATTGCCAAGAAATGTCC+AGG | 0.520062 | 1.3:-48980465 | MS.gene23988:CDS |
| ACTTGGTGGGGACAACCAGC+TGG | 0.521593 | 1.3:+48975937 | None:intergenic |
| AGATTAAGGGGAAACGTGGT+AGG | 0.523807 | 1.3:-48981612 | MS.gene23988:CDS |
| TACAGTTTACATAGGAACCT+TGG | 0.524108 | 1.3:+48974562 | None:intergenic |
| AAACTATTGATTGCTTGGAT+TGG | 0.524576 | 1.3:-48979024 | MS.gene23988:CDS |
| GCATACCCTGTATTAACAGT+TGG | 0.527233 | 1.3:-48981266 | MS.gene23988:intron |
| AGAACTTCTTATACTGTCCC+AGG | 0.529232 | 1.3:-48979225 | MS.gene23988:CDS |
| GAATATACAGATCCTTTCAA+TGG | 0.530031 | 1.3:-48978039 | MS.gene23988:CDS |
| GGACTCACCTGCACTTATCA+AGG | 0.530918 | 1.3:-48980409 | MS.gene23988:intron |
| CGATTTGTGGAAAATGGAAG+TGG | 0.534768 | 1.3:-48977156 | MS.gene23988:CDS |
| ATAAAACGTCTGATCATGGA+TGG | 0.535414 | 1.3:+48976150 | None:intergenic |
| CCATTGCTCTCCTTTAAAGC+AGG | 0.538406 | 1.3:-48976962 | MS.gene23988:intron |
| TTCAGATTTCGGACTTGGTG+GGG | 0.539205 | 1.3:+48975925 | None:intergenic |
| GGATCTGTATATTCTTTGAA+CGG | 0.541600 | 1.3:+48978048 | None:intergenic |
| ATGACGTAGATTTACTGCCC+TGG | 0.541910 | 1.3:+48979207 | None:intergenic |
| TTGCAATTACCACAGCATCC+TGG | 0.543302 | 1.3:+48980447 | None:intergenic |
| CTGCCACGTTTCTTTGCCGG+AGG | 0.549368 | 1.3:+48981763 | None:intergenic |
| CGAGGGCGTGATTATCTGCA+TGG | 0.550325 | 1.3:-48979595 | MS.gene23988:CDS |
| CGGTGGAGACTTCTGATAGT+AGG | 0.550779 | 1.3:-48979330 | MS.gene23988:CDS |
| GACTTGTAGGAATTGAACCC+TGG | 0.555009 | 1.3:-48975996 | MS.gene23988:intron |
| GCTTGGTATTACGTATCTGA+CGG | 0.555671 | 1.3:+48979068 | None:intergenic |
| GAACTGACCTTGATAAGTGC+AGG | 0.556203 | 1.3:+48980402 | None:intergenic |
| ACAACACAGTTGCTTTCACA+GGG | 0.556589 | 1.3:-48981855 | MS.gene23988:CDS |
| CTTCAGATTTCGGACTTGGT+GGG | 0.557725 | 1.3:+48975924 | None:intergenic |
| TAAAACGTCTGATCATGGAT+GGG | 0.558437 | 1.3:+48976151 | None:intergenic |
| TGACGTAGATTTACTGCCCT+GGG | 0.558873 | 1.3:+48979208 | None:intergenic |
| AATGCACGCCACATGACAAA+CGG | 0.559884 | 1.3:+48979091 | None:intergenic |
| GAAATCAATGCTGCTCAGGA+GGG | 0.560506 | 1.3:-48981553 | MS.gene23988:CDS |
| GCTGGGAACCGTTTGTCATG+TGG | 0.563485 | 1.3:-48979099 | MS.gene23988:CDS |
| CTGGGATATCTTTCGGAGAG+AGG | 0.564748 | 1.3:-48977040 | MS.gene23988:CDS |
| AAATCAATGCTGCTCAGGAG+GGG | 0.565311 | 1.3:-48981552 | MS.gene23988:CDS |
| CACGAAGCTCGCAGCAACAA+AGG | 0.565525 | 1.3:+48979668 | None:intergenic |
| TGGAACTGAAGAAGATTAAG+GGG | 0.565775 | 1.3:-48981624 | MS.gene23988:CDS |
| TGAAATCAATGCTGCTCAGG+AGG | 0.567663 | 1.3:-48981554 | MS.gene23988:CDS |
| GCACCTTGAGCAAGACAAGA+GGG | 0.570458 | 1.3:-48977274 | MS.gene23988:CDS |
| ACAGTATAAGAAGTTCTCAC+TGG | 0.571064 | 1.3:+48979231 | None:intergenic |
| AAGTGGAATATGTGATGAAA+AGG | 0.573587 | 1.3:-48977139 | MS.gene23988:CDS |
| GAGGCCAATTAAGCCAGTCC+AGG | 0.578924 | 1.3:+48978157 | None:intergenic |
| AATCAATGCTGCTCAGGAGG+GGG | 0.580226 | 1.3:-48981551 | MS.gene23988:CDS |
| GAATAGTAGATCGTTGAATG+AGG | 0.582028 | 1.3:-48981674 | MS.gene23988:CDS |
| TGTATATTCTTTGAACGGCA+AGG | 0.583089 | 1.3:+48978053 | None:intergenic |
| CCTGCTTTAAAGGAGAGCAA+TGG | 0.584616 | 1.3:+48976962 | None:intergenic |
| GAGTTTGAGTTTATCTTCCG+AGG | 0.584896 | 1.3:-48979613 | MS.gene23988:CDS |
| GAAAATAGTTTATTGGTTGG+GGG | 0.586081 | 1.3:-48977084 | MS.gene23988:CDS |
| GTTGCTGCGAGCTTCGTGGT+GGG | 0.586137 | 1.3:-48979663 | MS.gene23988:CDS |
| GAAACGTGGTAGGAAGAAGA+AGG | 0.586757 | 1.3:-48981602 | MS.gene23988:CDS |
| ATATGAACTCGGCACAATGA+CGG | 0.586817 | 1.3:+48978079 | None:intergenic |
| AAGGTATCCTGACTTGAAAG+AGG | 0.587569 | 1.3:-48980490 | MS.gene23988:CDS |
| AGGTTTAGAACACCATTGAA+AGG | 0.588651 | 1.3:+48978027 | None:intergenic |
| CAAGACAAGAGGGAGCTACA+TGG | 0.591607 | 1.3:-48977264 | MS.gene23988:CDS |
| GTCTGCAGAGGACAAATTGG+AGG | 0.593405 | 1.3:-48975378 | MS.gene23988:intron |
| TGTTGCTGCGAGCTTCGTGG+TGG | 0.594415 | 1.3:-48979664 | MS.gene23988:CDS |
| TGATCTGGTCGAGAAGTTGG+AGG | 0.595507 | 1.3:-48974793 | MS.gene23988:CDS |
| TGATTGCTTGGATTGGTGTG+AGG | 0.595645 | 1.3:-48979017 | MS.gene23988:intron |
| ACTTGGAGAGCTCAACCTCA+TGG | 0.596456 | 1.3:+48980272 | None:intergenic |
| TTACTTAACAGATGTGGAGG+AGG | 0.596713 | 1.3:-48981650 | MS.gene23988:CDS |
| AAAACGTCTGATCATGGATG+GGG | 0.596952 | 1.3:+48976152 | None:intergenic |
| CCCAACCCGAGATTCGTGAA+TGG | 0.597529 | 1.3:-48979522 | MS.gene23988:CDS |
| AATTAAGCTTCAAGTTGCGG+TGG | 0.598915 | 1.3:-48979347 | MS.gene23988:CDS |
| ACGTTTCTTTGCCGGAGGAG+CGG | 0.599042 | 1.3:+48981768 | None:intergenic |
| CTTTAGGCAACTTCACAGCA+AGG | 0.600321 | 1.3:+48978007 | None:intergenic |
| AAGAAGGTGGCAATTGGTGT+CGG | 0.600696 | 1.3:-48981586 | MS.gene23988:CDS |
| ATGTACATCAGGTTTAAGCT+GGG | 0.604955 | 1.3:-48979116 | MS.gene23988:CDS |
| ACCATGATCACAATCATCAT+CGG | 0.605104 | 1.3:+48979447 | None:intergenic |
| CGAGTGCTTTCGTTTGACAG+AGG | 0.605461 | 1.3:-48975429 | MS.gene23988:CDS |
| GGCAGTAAATCTACGTCATG+AGG | 0.606103 | 1.3:-48979203 | MS.gene23988:CDS |
| TGAGGATTACTTAACAGATG+TGG | 0.606859 | 1.3:-48981656 | MS.gene23988:CDS |
| TAAAAGAAATGACAAGGGCA+GGG | 0.606870 | 1.3:-48981325 | MS.gene23988:CDS |
| TCCTCAAATAAATTAGAAGG+AGG | 0.607054 | 1.3:+48978111 | None:intergenic |
| TGGAATATGTGATGAAAAGG+TGG | 0.607337 | 1.3:-48977136 | MS.gene23988:CDS |
| AGTTTGAGTTTATCTTCCGA+GGG | 0.609136 | 1.3:-48979612 | MS.gene23988:CDS |
| GATACATCTACAGTTTACAT+AGG | 0.609345 | 1.3:+48974554 | None:intergenic |
| TCTTTCAGTTTCAAAACCTG+AGG | 0.609559 | 1.3:+48978138 | None:intergenic |
| AGCTTCTGAACAAAAGTCCA+GGG | 0.617796 | 1.3:+48975979 | None:intergenic |
| AGCACCTTGAGCAAGACAAG+AGG | 0.618569 | 1.3:-48977275 | MS.gene23988:CDS |
| GAGATAGAAGCAAAGAGACA+AGG | 0.619116 | 1.3:-48980187 | MS.gene23988:intron |
| TCGGGTTGGGCAGCAGCACG+AGG | 0.619296 | 1.3:+48979535 | None:intergenic |
| ATGCATTGAACAGCAACAGA+TGG | 0.621495 | 1.3:-48981518 | MS.gene23988:intron |
| CGGCAAGGAAGATATGAACT+CGG | 0.631163 | 1.3:+48978068 | None:intergenic |
| TCGAGAAGTTGGAGGAAGCA+AGG | 0.632086 | 1.3:-48974785 | MS.gene23988:intron |
| GGATTACTTAACAGATGTGG+AGG | 0.635978 | 1.3:-48981653 | MS.gene23988:CDS |
| CATACACAATAGCACAAGGA+AGG | 0.637072 | 1.3:-48979272 | MS.gene23988:CDS |
| GCTCCTCCGGCAAAGAAACG+TGG | 0.637351 | 1.3:-48981766 | MS.gene23988:CDS |
| CATGCAGATAATCACGCCCT+CGG | 0.639805 | 1.3:+48979596 | None:intergenic |
| TTACAGGTCTGGAGAAACCA+AGG | 0.639931 | 1.3:-48974579 | MS.gene23988:intron |
| CCACCAAGTCCGAAATCTGA+AGG | 0.644909 | 1.3:-48975923 | MS.gene23988:intron |
| GAAGTGAAGCTGGATTCTAA+GGG | 0.652860 | 1.3:-48977327 | MS.gene23988:CDS |
| AAAAGGGCGAAAGTGTGAGA+AGG | 0.653518 | 1.3:-48981714 | MS.gene23988:CDS |
| CTGACATACACAATAGCACA+AGG | 0.658068 | 1.3:-48979276 | MS.gene23988:CDS |
| GGGCAGGGTTGTGAAATGCA+CGG | 0.660572 | 1.3:-48981310 | MS.gene23988:CDS |
| GGATGGCTTGCAGACAGTGA+TGG | 0.662046 | 1.3:-48979490 | MS.gene23988:CDS |
| ATTCTTTACTGGGTACACAA+AGG | 0.662591 | 1.3:-48978184 | MS.gene23988:CDS |
| ATGAACTCGGCACAATGACG+GGG | 0.667242 | 1.3:+48978081 | None:intergenic |
| GTATCCTGACTTGAAAGAGG+AGG | 0.668706 | 1.3:-48980487 | MS.gene23988:CDS |
| TCAATGTAAAAGAAATGACA+AGG | 0.668906 | 1.3:-48981331 | MS.gene23988:CDS |
| CGTGGTGGGAAGCTTCTAGG+TGG | 0.669451 | 1.3:-48979649 | MS.gene23988:CDS |
| CTACATGGTGATAATCGGGA+CGG | 0.669945 | 1.3:-48977249 | MS.gene23988:CDS |
| GTGAATGGTCAAGATCTGGA+TGG | 0.677090 | 1.3:-48979507 | MS.gene23988:CDS |
| AGTAAATCACAAGTCTGCAG+AGG | 0.679551 | 1.3:-48975390 | MS.gene23988:CDS |
| ACATACCAACTGTTAATACA+GGG | 0.682457 | 1.3:+48981261 | None:intergenic |
| AAGAAATGTCCAGGATGCTG+TGG | 0.691596 | 1.3:-48980456 | MS.gene23988:CDS |
| GAACTTCTTATACTGTCCCA+GGG | 0.693482 | 1.3:-48979224 | MS.gene23988:CDS |
| GGGCGTGATTATCTGCATGG+TGG | 0.701277 | 1.3:-48979592 | MS.gene23988:CDS |
| CTGCATCTGACATATCACAA+TGG | 0.702155 | 1.3:+48977896 | None:intergenic |
| ACGTGGTAGGAAGAAGAAGG+TGG | 0.709702 | 1.3:-48981599 | MS.gene23988:CDS |
| AAGAAGATTAAGGGGAAACG+TGG | 0.711553 | 1.3:-48981616 | MS.gene23988:CDS |
| CAATGTAAAAGAAATGACAA+GGG | 0.715489 | 1.3:-48981330 | MS.gene23988:CDS |
| AGAAACCAACAATGACCATG+AGG | 0.730663 | 1.3:-48980287 | MS.gene23988:CDS |
| TCAATGGCACTGGAGCAAAG+GGG | 0.769506 | 1.3:-48979167 | MS.gene23988:CDS |
| CAACACAGTTGCTTTCACAG+GGG | 0.779411 | 1.3:-48981854 | MS.gene23988:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 48974568 | 48981902 | 48974568 | ID=MS.gene23988 |
| chr1.3 | mRNA | 48974568 | 48981902 | 48974568 | ID=MS.gene23988.t1;Parent=MS.gene23988 |
| chr1.3 | exon | 48981519 | 48981902 | 48981519 | ID=MS.gene23988.t1.exon1;Parent=MS.gene23988.t1 |
| chr1.3 | CDS | 48981519 | 48981902 | 48981519 | ID=cds.MS.gene23988.t1;Parent=MS.gene23988.t1 |
| chr1.3 | exon | 48981267 | 48981403 | 48981267 | ID=MS.gene23988.t1.exon2;Parent=MS.gene23988.t1 |
| chr1.3 | CDS | 48981267 | 48981403 | 48981267 | ID=cds.MS.gene23988.t1;Parent=MS.gene23988.t1 |
| chr1.3 | exon | 48980410 | 48980509 | 48980410 | ID=MS.gene23988.t1.exon3;Parent=MS.gene23988.t1 |
| chr1.3 | CDS | 48980410 | 48980509 | 48980410 | ID=cds.MS.gene23988.t1;Parent=MS.gene23988.t1 |
| chr1.3 | exon | 48980188 | 48980326 | 48980188 | ID=MS.gene23988.t1.exon4;Parent=MS.gene23988.t1 |
| chr1.3 | CDS | 48980188 | 48980326 | 48980188 | ID=cds.MS.gene23988.t1;Parent=MS.gene23988.t1 |
| chr1.3 | exon | 48979838 | 48979901 | 48979838 | ID=MS.gene23988.t1.exon5;Parent=MS.gene23988.t1 |
| chr1.3 | CDS | 48979838 | 48979901 | 48979838 | ID=cds.MS.gene23988.t1;Parent=MS.gene23988.t1 |
| chr1.3 | exon | 48979018 | 48979759 | 48979018 | ID=MS.gene23988.t1.exon6;Parent=MS.gene23988.t1 |
| chr1.3 | CDS | 48979018 | 48979759 | 48979018 | ID=cds.MS.gene23988.t1;Parent=MS.gene23988.t1 |
| chr1.3 | exon | 48977897 | 48978226 | 48977897 | ID=MS.gene23988.t1.exon7;Parent=MS.gene23988.t1 |
| chr1.3 | CDS | 48977897 | 48978226 | 48977897 | ID=cds.MS.gene23988.t1;Parent=MS.gene23988.t1 |
| chr1.3 | exon | 48976963 | 48977373 | 48976963 | ID=MS.gene23988.t1.exon8;Parent=MS.gene23988.t1 |
| chr1.3 | CDS | 48976963 | 48977373 | 48976963 | ID=cds.MS.gene23988.t1;Parent=MS.gene23988.t1 |
| chr1.3 | exon | 48976110 | 48976182 | 48976110 | ID=MS.gene23988.t1.exon9;Parent=MS.gene23988.t1 |
| chr1.3 | CDS | 48976110 | 48976182 | 48976110 | ID=cds.MS.gene23988.t1;Parent=MS.gene23988.t1 |
| chr1.3 | exon | 48975924 | 48976009 | 48975924 | ID=MS.gene23988.t1.exon10;Parent=MS.gene23988.t1 |
| chr1.3 | CDS | 48975924 | 48976009 | 48975924 | ID=cds.MS.gene23988.t1;Parent=MS.gene23988.t1 |
| chr1.3 | exon | 48975379 | 48975498 | 48975379 | ID=MS.gene23988.t1.exon11;Parent=MS.gene23988.t1 |
| chr1.3 | CDS | 48975379 | 48975498 | 48975379 | ID=cds.MS.gene23988.t1;Parent=MS.gene23988.t1 |
| chr1.3 | exon | 48974786 | 48974844 | 48974786 | ID=MS.gene23988.t1.exon12;Parent=MS.gene23988.t1 |
| chr1.3 | CDS | 48974786 | 48974844 | 48974786 | ID=cds.MS.gene23988.t1;Parent=MS.gene23988.t1 |
| chr1.3 | exon | 48974568 | 48974595 | 48974568 | ID=MS.gene23988.t1.exon13;Parent=MS.gene23988.t1 |
| chr1.3 | CDS | 48974568 | 48974595 | 48974568 | ID=cds.MS.gene23988.t1;Parent=MS.gene23988.t1 |
| Gene Sequence |
| Protein sequence |
