AlfalfaGEDB | MS.gene24747

M. sativa cultivar XinJiangDaYe / MS.gene24747

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24747.t1	XP_024634011.1	95.4	109	4	1	1	108	1	109	3.60E-53	217.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24747.t1	A0A396IWG2	95.4	109	4	1	1	108	1	109	2.6e-53	217.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049320	MS.gene24747	0.80026	1.57E-48	-1.69E-46
MS.gene050577	MS.gene24747	0.800979	1.12E-48	-1.69E-46
MS.gene050675	MS.gene24747	0.814257	1.69E-51	-1.69E-46
MS.gene05080	MS.gene24747	0.800221	1.60E-48	-1.69E-46
MS.gene050868	MS.gene24747	0.801505	8.73E-49	-1.69E-46
MS.gene050871	MS.gene24747	0.804098	2.54E-49	-1.69E-46
MS.gene050986	MS.gene24747	0.814726	1.33E-51	-1.69E-46
MS.gene051509	MS.gene24747	0.807017	6.21E-50	-1.69E-46
MS.gene051838	MS.gene24747	0.805725	1.16E-49	-1.69E-46
MS.gene051941	MS.gene24747	0.818505	1.89E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24747.t1	MTR_3g076960	95.370	108	4	1	1	107	1	108	8.91e-55	168
MS.gene24747.t1	MTR_3g076950	68.908	119	23	6	1	108	1	116	9.24e-42	133
MS.gene24747.t1	MTR_3g076950	68.908	119	23	6	1	108	1	116	9.44e-42	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 46 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTACCCACGAAGGAAC+AGG	0.491085	3.2:-68114547	MS.gene24747:CDS
AATCATTGAGAGGGTTGAAG+TGG	0.684831	3.2:-68114651	MS.gene24747:CDS
AATGTGGGTGTGGTAGTCAT+TGG	0.581040	3.2:+68114805	None:intergenic
ACAACCCTGAAATCATTGAG+AGG	0.645359	3.2:-68114661	MS.gene24747:CDS
ACAGGTCAAATGGTCACTCA+TGG	0.552434	3.2:-68114529	MS.gene24747:CDS
AGTGATCTACGAAGAGGACG+TGG	0.585316	3.2:-68114585	MS.gene24747:CDS
ATAGACAACCCTCTTGTTGA+AGG	0.438765	3.2:+68114727	None:intergenic
ATGAACGTGTACCTGAGGTT+AGG	0.542173	3.2:-68114622	MS.gene24747:CDS
CAACAAGAGGGTTGTCTATG+AGG	0.468986	3.2:-68114723	MS.gene24747:CDS
CAACCCTCTCAATGATTTCA+GGG	0.395577	3.2:+68114657	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCATTGAGAGGGTTGAAG+TGG	-	chr3.2:68114675-68114694	MS.gene24747:CDS	40.0%
ACAACCCTGAAATCATTGAG+AGG	-	chr3.2:68114665-68114684	MS.gene24747:CDS	40.0%
ATAGACAACCCTCTTGTTGA+AGG	+	chr3.2:68114602-68114621	None:intergenic	40.0%
CAACCCTCTCAATGATTTCA+GGG	+	chr3.2:68114672-68114691	None:intergenic	40.0%
CAACCCTGAAATCATTGAGA+GGG	-	chr3.2:68114666-68114685	MS.gene24747:CDS	40.0%
CCACATTTCAGAAGTTCGAA+GGG	-	chr3.2:68114537-68114556	MS.gene24747:CDS	40.0%
GTCACTCATGGAATACATTC+AGG	-	chr3.2:68114809-68114828	MS.gene24747:CDS	40.0%
TAGATCACTTGACCACCATA+GGG	+	chr3.2:68114730-68114749	None:intergenic	40.0%
TCAACCCTCTCAATGATTTC+AGG	+	chr3.2:68114673-68114692	None:intergenic	40.0%
TCTCAATGATTTCAGGGTTG+TGG	+	chr3.2:68114666-68114685	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	68114511	68114837	68114511	ID=MS.gene24747
chr3.2	mRNA	68114511	68114837	68114511	ID=MS.gene24747.t1;Parent=MS.gene24747
chr3.2	exon	68114511	68114837	68114511	ID=MS.gene24747.t1.exon1;Parent=MS.gene24747.t1
chr3.2	CDS	68114511	68114837	68114511	ID=cds.MS.gene24747.t1;Parent=MS.gene24747.t1

Gene Sequence	>MS.gene24747 ATGATGAGATCCAATGACTACCACACCCACATTTCAGAAGTTCGAAGGGAGCCTAGCGAATACTCTCGCTACCCAAATGGTGAGATGGCCTTCAACAAGAGGGTTGTCTATGAGGAGGATGCGATTGAAGGATCACGCCATGGCCGCCACCACCACAACCCTGAAATCATTGAGAGGGTTGAAGTGGTGGAATATGAACGTGTACCTGAGGTTAGGCCCTATGGTGGTCAAGTGATCTACGAAGAGGACGTGGATGTTGAGACCAATCAACATTACCCACGAAGGAACAGGTCAAATGGTCACTCATGGAATACATTCAGGCCATAA
Protein sequence	>MS.gene24747.t1 MMRSNDYHTHISEVRREPSEYSRYPNGEMAFNKRVVYEEDAIEGSRHGRHHHNPEIIERVEVVEYERVPEVRPYGGQVIYEEDVDVETNQHYPRRNRSNGHSWNTFRP