Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27054.t1 | XP_003589478.1 | 70.3 | 296 | 25 | 3 | 1 | 260 | 224 | 492 | 1.80E-98 | 369 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27054.t1 | Q6Q8A5 | 53.2 | 299 | 78 | 3 | 1 | 263 | 226 | 498 | 8.6e-73 | 275.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27054.t1 | G7I766 | 70.3 | 296 | 25 | 3 | 1 | 260 | 224 | 492 | 1.3e-98 | 369.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene27054 | 0.837115 | 6.29E-57 | -1.69E-46 |
| MS.gene049404 | MS.gene27054 | 0.817622 | 3.00E-52 | -1.69E-46 |
| MS.gene050073 | MS.gene27054 | 0.808642 | 2.80E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene27054 | 0.813611 | 2.35E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene27054 | 0.840882 | 6.65E-58 | -1.69E-46 |
| MS.gene051332 | MS.gene27054 | 0.802939 | 4.42E-49 | -1.69E-46 |
| MS.gene051594 | MS.gene27054 | 0.814243 | 1.70E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene27054 | 0.820456 | 6.80E-53 | -1.69E-46 |
| MS.gene051957 | MS.gene27054 | 0.815289 | 9.98E-52 | -1.69E-46 |
| MS.gene052447 | MS.gene27054 | 0.830072 | 3.61E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene27054 | 0.804041 | 2.61E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene27054 | 0.802319 | 5.94E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene27054 | 0.815994 | 6.95E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene27054 | 0.806828 | 6.80E-50 | -1.69E-46 |
| MS.gene053154 | MS.gene27054 | 0.802527 | 5.38E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene27054 | 0.808269 | 3.36E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene27054 | 0.819214 | 1.31E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene27054 | 0.802772 | 4.79E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene27054 | 0.802427 | 5.64E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene27054 | 0.813216 | 2.86E-51 | -1.69E-46 |
| MS.gene054991 | MS.gene27054 | 0.819931 | 8.96E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene27054 | 0.81431 | 1.64E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene27054 | 0.800541 | 1.37E-48 | -1.69E-46 |
| MS.gene056162 | MS.gene27054 | 0.80107 | 1.07E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene27054 | 0.822008 | 2.98E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene27054 | 0.80975 | 1.62E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene27054 | 0.800035 | 1.74E-48 | -1.69E-46 |
| MS.gene05690 | MS.gene27054 | 0.801555 | 8.52E-49 | -1.69E-46 |
| MS.gene057414 | MS.gene27054 | 0.806367 | 8.51E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene27054 | 0.808706 | 2.71E-50 | -1.69E-46 |
| MS.gene058294 | MS.gene27054 | 0.806411 | 8.34E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene27054 | 0.800049 | 1.73E-48 | -1.69E-46 |
| MS.gene059015 | MS.gene27054 | 0.802376 | 5.78E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene27054 | 0.801085 | 1.06E-48 | -1.69E-46 |
| MS.gene059458 | MS.gene27054 | 0.803425 | 3.51E-49 | -1.69E-46 |
| MS.gene059459 | MS.gene27054 | 0.807043 | 6.13E-50 | -1.69E-46 |
| MS.gene059460 | MS.gene27054 | 0.82256 | 2.22E-53 | -1.69E-46 |
| MS.gene059584 | MS.gene27054 | 0.838287 | 3.15E-57 | -1.69E-46 |
| MS.gene059625 | MS.gene27054 | 0.800186 | 1.62E-48 | -1.69E-46 |
| MS.gene060167 | MS.gene27054 | 0.804096 | 2.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27054.t1 | MTR_1g025140 | 70.270 | 296 | 25 | 3 | 1 | 260 | 224 | 492 | 1.31e-132 | 384 |
| MS.gene27054.t1 | MTR_1g025140 | 76.440 | 191 | 18 | 2 | 1 | 191 | 224 | 387 | 2.15e-94 | 283 |
| MS.gene27054.t1 | MTR_8g102460 | 41.611 | 298 | 109 | 6 | 1 | 260 | 87 | 357 | 3.98e-67 | 212 |
| MS.gene27054.t1 | MTR_8g102460 | 41.611 | 298 | 109 | 6 | 1 | 260 | 222 | 492 | 1.30e-65 | 212 |
| MS.gene27054.t1 | MTR_6g088795 | 42.617 | 298 | 106 | 6 | 1 | 260 | 220 | 490 | 5.82e-64 | 208 |
| MS.gene27054.t1 | MTR_8g014530 | 39.597 | 298 | 115 | 6 | 1 | 260 | 221 | 491 | 2.29e-59 | 196 |
| MS.gene27054.t1 | MTR_4g097900 | 39.464 | 261 | 121 | 6 | 1 | 256 | 1 | 229 | 1.48e-50 | 166 |
| MS.gene27054.t1 | MTR_5g009000 | 35.082 | 305 | 123 | 7 | 1 | 258 | 220 | 496 | 1.22e-46 | 162 |
| MS.gene27054.t1 | MTR_8g102460 | 61.017 | 118 | 45 | 1 | 1 | 117 | 222 | 339 | 7.48e-44 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27054.t1 | AT1G47840 | 45.608 | 296 | 97 | 5 | 1 | 260 | 226 | 493 | 1.49e-74 | 235 |
| MS.gene27054.t1 | AT4G29130 | 41.196 | 301 | 112 | 6 | 1 | 263 | 222 | 495 | 3.62e-62 | 203 |
| MS.gene27054.t1 | AT2G19860 | 40.940 | 298 | 111 | 6 | 1 | 260 | 113 | 383 | 3.83e-59 | 192 |
| MS.gene27054.t1 | AT2G19860 | 40.940 | 298 | 111 | 6 | 1 | 260 | 222 | 492 | 4.59e-58 | 192 |
| MS.gene27054.t1 | AT1G47840 | 68.421 | 114 | 35 | 1 | 1 | 114 | 226 | 338 | 1.26e-47 | 162 |
| MS.gene27054.t1 | AT1G50460 | 33.333 | 303 | 127 | 5 | 1 | 256 | 145 | 419 | 3.24e-44 | 154 |
| MS.gene27054.t1 | AT1G50460 | 33.333 | 303 | 127 | 5 | 1 | 256 | 221 | 495 | 1.20e-43 | 154 |
| MS.gene27054.t1 | AT3G20040 | 32.000 | 300 | 133 | 5 | 1 | 257 | 222 | 493 | 1.35e-40 | 146 |
| MS.gene27054.t1 | AT4G37840 | 36.140 | 285 | 122 | 7 | 4 | 255 | 225 | 482 | 1.92e-39 | 143 |
| MS.gene27054.t1 | AT1G47845 | 46.154 | 156 | 58 | 3 | 58 | 213 | 40 | 169 | 4.67e-37 | 129 |
| MS.gene27054.t1 | AT1G50460 | 51.695 | 118 | 56 | 1 | 1 | 117 | 221 | 338 | 8.85e-34 | 125 |
Find 51 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTATCAAATACAGTTAA+AGG | 0.151018 | 1.1:+796806 | None:intergenic |
| TGTAAATTGTAAGCATATTT+TGG | 0.164201 | 1.1:+796170 | None:intergenic |
| AGAAACATGGCCTTGTAATT+TGG | 0.165747 | 1.1:+796984 | None:intergenic |
| TGTTTCTTCTTCTGGTAAAA+TGG | 0.207744 | 1.1:-796968 | MS.gene27054:intron |
| CAAGGCCATGTTTCTTCTTC+TGG | 0.211056 | 1.1:-796976 | MS.gene27054:CDS |
| GAAACATGGCCTTGTAATTT+GGG | 0.287932 | 1.1:+796985 | None:intergenic |
| TGCTGCATGGCGCTTAGATC+CGG | 0.320311 | 1.1:+796129 | None:intergenic |
| TCAAAAGATGGTTCAGGTAT+TGG | 0.321089 | 1.1:-795636 | MS.gene27054:CDS |
| GCTGCATGGCGCTTAGATCC+GGG | 0.391118 | 1.1:+796130 | None:intergenic |
| AGATACACTTTGTGTTTGTA+AGG | 0.396369 | 1.1:-796236 | MS.gene27054:CDS |
| CTCTATCAAATACAGTTAAA+GGG | 0.412605 | 1.1:+796807 | None:intergenic |
| AACTGTATTTGATAGAGAAA+TGG | 0.419441 | 1.1:-796801 | MS.gene27054:CDS |
| GAGACGAGTGCTAGTCAATA+TGG | 0.421859 | 1.1:-796596 | MS.gene27054:CDS |
| TGCTCAATCTTGTTTGTACA+TGG | 0.425914 | 1.1:+795587 | None:intergenic |
| GAACATTCAAAAGATGGTTC+AGG | 0.429010 | 1.1:-795642 | MS.gene27054:CDS |
| AAAGCGAGGTGGTAGCTTGC+CGG | 0.429514 | 1.1:-795846 | MS.gene27054:CDS |
| GTGATAGAACATTCAAAAGA+TGG | 0.439467 | 1.1:-795648 | MS.gene27054:CDS |
| AGGTATTGGAGGTGCTCTAT+TGG | 0.445879 | 1.1:-795622 | MS.gene27054:CDS |
| AGGTGGTAGCTTGCCGGTGC+AGG | 0.449812 | 1.1:-795840 | MS.gene27054:CDS |
| GCCATGCAGCAAGATAATTC+TGG | 0.458132 | 1.1:-796117 | MS.gene27054:CDS |
| ACAATCTCAGGAATGTATCT+AGG | 0.472627 | 1.1:-796628 | MS.gene27054:CDS |
| CTGGCGATTTACAAGCAGTT+GGG | 0.483122 | 1.1:-796098 | MS.gene27054:CDS |
| AGATATGCGAGTTTCTGCTT+TGG | 0.488293 | 1.1:-797230 | None:intergenic |
| GCTAGTCAATATGGCTAAAG+AGG | 0.497774 | 1.1:-796587 | MS.gene27054:CDS |
| TCCCTCCTCTATGATAAAGC+AGG | 0.511452 | 1.1:-796075 | MS.gene27054:CDS |
| TCTGGCGATTTACAAGCAGT+TGG | 0.527066 | 1.1:-796099 | MS.gene27054:CDS |
| TTACCCCTGCTTTATCATAG+AGG | 0.528899 | 1.1:+796070 | None:intergenic |
| GTCAATATGGCTAAAGAGGA+AGG | 0.546836 | 1.1:-796583 | MS.gene27054:intron |
| TCAGATCATTAGTACTGAGT+GGG | 0.549065 | 1.1:-796849 | MS.gene27054:intron |
| ATGGCCTTGTAATTTGGGAA+TGG | 0.553947 | 1.1:+796990 | None:intergenic |
| AGTGCCATTCCCAAATTACA+AGG | 0.562170 | 1.1:-796994 | MS.gene27054:CDS |
| CGAAAACTTACATGGTGACC+AGG | 0.563070 | 1.1:+796761 | None:intergenic |
| GCCAGAATTATCTTGCTGCA+TGG | 0.563415 | 1.1:+796116 | None:intergenic |
| AAAGATGGTTCAGGTATTGG+AGG | 0.563572 | 1.1:-795633 | MS.gene27054:CDS |
| TTACTTGCAAGATTCAGTAA+AGG | 0.568226 | 1.1:-795703 | MS.gene27054:CDS |
| GATACTGTCGGAACACTAGC+CGG | 0.573684 | 1.1:-797096 | MS.gene27054:CDS |
| AATCCCTACAATTCCTGCAC+CGG | 0.577992 | 1.1:+795827 | None:intergenic |
| CCCCTGCTTTATCATAGAGG+AGG | 0.578706 | 1.1:+796073 | None:intergenic |
| CTGCATGGCGCTTAGATCCG+GGG | 0.580837 | 1.1:+796131 | None:intergenic |
| CCCTGCTTTATCATAGAGGA+GGG | 0.582109 | 1.1:+796074 | None:intergenic |
| ATTGTCGTAGTATTCTGCTC+CGG | 0.591120 | 1.1:+797077 | None:intergenic |
| ATACTACGACAATGATGCTA+AGG | 0.592137 | 1.1:-797067 | MS.gene27054:CDS |
| CCCTCCTCTATGATAAAGCA+GGG | 0.592227 | 1.1:-796074 | MS.gene27054:CDS |
| GATGCTGCTGGTATAAATCC+TGG | 0.595310 | 1.1:-796779 | MS.gene27054:CDS |
| GATAGAGAAATGGATGCTGC+TGG | 0.610170 | 1.1:-796791 | MS.gene27054:CDS |
| TTCAGATCATTAGTACTGAG+TGG | 0.635066 | 1.1:-796850 | MS.gene27054:intron |
| TGATAGGTTAATGATACTGT+CGG | 0.637284 | 1.1:-797108 | MS.gene27054:intron |
| TGCGACACAATTGTAAAGCG+AGG | 0.658970 | 1.1:-795860 | MS.gene27054:CDS |
| CAGATCATTAGTACTGAGTG+GGG | 0.682773 | 1.1:-796848 | MS.gene27054:CDS |
| CCTCCTCTATGATAAAGCAG+GGG | 0.712381 | 1.1:-796073 | MS.gene27054:intron |
| GACACAATTGTAAAGCGAGG+TGG | 0.713641 | 1.1:-795857 | MS.gene27054:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAATAATCTTATTTG+TGG | - | chr1.1:796378-796397 | MS.gene27054:intron | 10.0% |
| !!! | AATTTACAAATAAATTTTAC+AGG | - | chr1.1:796661-796680 | MS.gene27054:intron | 10.0% |
| !!! | TTATTTTTTAATTAAACACA+CGG | + | chr1.1:796365-796384 | None:intergenic | 10.0% |
| !! | TTATTTGAACAAAGAAATAA+AGG | + | chr1.1:795895-795914 | None:intergenic | 15.0% |
| !! | AGATTAATATGTACTTTCTT+GGG | + | chr1.1:796841-796860 | None:intergenic | 20.0% |
| !! | ATGCATATTAAAATGTGAAA+GGG | + | chr1.1:796285-796304 | None:intergenic | 20.0% |
| !! | TAAATATACAAATGCAGTAT+TGG | - | chr1.1:795658-795677 | MS.gene27054:CDS | 20.0% |
| !!! | GCAGATAATTTAAAATACTA+AGG | + | chr1.1:796819-796838 | None:intergenic | 20.0% |
| !!! | TGTAAATTGTAAGCATATTT+TGG | + | chr1.1:796649-796668 | None:intergenic | 20.0% |
| ! | AAATAGTATAAACGGATATG+TGG | + | chr1.1:796501-796520 | None:intergenic | 25.0% |
| ! | AACTGTATTTGATAGAGAAA+TGG | - | chr1.1:796015-796034 | MS.gene27054:intron | 25.0% |
| ! | ATGAAAATTATCCTCAATAC+AGG | - | chr1.1:797088-797107 | MS.gene27054:CDS | 25.0% |
| ! | CATGCATATTAAAATGTGAA+AGG | + | chr1.1:796286-796305 | None:intergenic | 25.0% |
| ! | CTCTATCAAATACAGTTAAA+GGG | + | chr1.1:796012-796031 | None:intergenic | 25.0% |
| ! | GAGATTAATATGTACTTTCT+TGG | + | chr1.1:796842-796861 | None:intergenic | 25.0% |
| ! | TCTCTATCAAATACAGTTAA+AGG | + | chr1.1:796013-796032 | None:intergenic | 25.0% |
| ! | TGATTGATATTACGAATGAT+AGG | + | chr1.1:796446-796465 | None:intergenic | 25.0% |
| !! | TGTTTTTCTTTCACTTAGAT+TGG | + | chr1.1:796924-796943 | None:intergenic | 25.0% |
| !!! | AAATGCAGTATTGGTATAAA+TGG | - | chr1.1:795667-795686 | MS.gene27054:CDS | 25.0% |
| !!! | ACTCACTTGTTTTCTATATA+AGG | + | chr1.1:796125-796144 | None:intergenic | 25.0% |
| !!! | ATGGATCACAAAGTTTTATA+TGG | + | chr1.1:796472-796491 | None:intergenic | 25.0% |
| !!! | CTCACTTGTTTTCTATATAA+GGG | + | chr1.1:796124-796143 | None:intergenic | 25.0% |
| !!! | TTGATCGCTTTTAATTCTAT+AGG | - | chr1.1:796407-796426 | MS.gene27054:intron | 25.0% |
| AAAATGGAAGAAGACTCAAA+AGG | - | chr1.1:797018-797037 | MS.gene27054:CDS | 30.0% | |
| AACGGATATGTGGATTTATA+TGG | + | chr1.1:796491-796510 | None:intergenic | 30.0% | |
| AATATTCCTTGGTCACTATA+TGG | - | chr1.1:796310-796329 | MS.gene27054:intron | 30.0% | |
| AGATACACTTTGTGTTTGTA+AGG | - | chr1.1:796580-796599 | MS.gene27054:intron | 30.0% | |
| ATGCATGCATAAATATTCCT+TGG | - | chr1.1:796299-796318 | MS.gene27054:intron | 30.0% | |
| CAACAACATTACAATATCGA+TGG | + | chr1.1:796083-796102 | None:intergenic | 30.0% | |
| CTAATAATTTCCTACCTGAT+AGG | - | chr1.1:795692-795711 | MS.gene27054:CDS | 30.0% | |
| GGTAAAATGGTTAGTAAAAG+TGG | - | chr1.1:795861-795880 | MS.gene27054:CDS | 30.0% | |
| GTGATAGAACATTCAAAAGA+TGG | - | chr1.1:797168-797187 | MS.gene27054:intron | 30.0% | |
| TGATAGGTTAATGATACTGT+CGG | - | chr1.1:795708-795727 | MS.gene27054:CDS | 30.0% | |
| TGTTTCTTCTTCTGGTAAAA+TGG | - | chr1.1:795848-795867 | MS.gene27054:CDS | 30.0% | |
| TTACTTGCAAGATTCAGTAA+AGG | - | chr1.1:797113-797132 | MS.gene27054:intron | 30.0% | |
| ! | AAATAAATTTTACAGGACCC+CGG | - | chr1.1:796668-796687 | MS.gene27054:intron | 30.0% |
| ! | TGAAAGAAAAACAGTTCTAG+AGG | - | chr1.1:796931-796950 | MS.gene27054:intron | 30.0% |
| ! | TTTTACCAGAAGAAGAAACA+TGG | + | chr1.1:795848-795867 | None:intergenic | 30.0% |
| !! | ATTTTTGAGAAGACAATCTC+AGG | - | chr1.1:796176-796195 | MS.gene27054:CDS | 30.0% |
| ACAATCTCAGGAATGTATCT+AGG | - | chr1.1:796188-796207 | MS.gene27054:CDS | 35.0% | |
| ATACTACGACAATGATGCTA+AGG | - | chr1.1:795749-795768 | MS.gene27054:intron | 35.0% | |
| CACGGTAATTCAACAGTTAT+TGG | + | chr1.1:796347-796366 | None:intergenic | 35.0% | |
| GAACATTCAAAAGATGGTTC+AGG | - | chr1.1:797174-797193 | MS.gene27054:intron | 35.0% | |
| GACAGTATCATTAACCTATC+AGG | + | chr1.1:795709-795728 | None:intergenic | 35.0% | |
| GCTAAAGAGGAAGGTTTATT+TGG | - | chr1.1:796242-796261 | MS.gene27054:CDS | 35.0% | |
| GTATCATTAACCTATCAGGT+AGG | + | chr1.1:795705-795724 | None:intergenic | 35.0% | |
| TAGATTGGATTCAACCTGAA+TGG | + | chr1.1:796909-796928 | None:intergenic | 35.0% | |
| TCAAAAGATGGTTCAGGTAT+TGG | - | chr1.1:797180-797199 | MS.gene27054:intron | 35.0% | |
| TGTAGGGATTCTGCAAAAAA+TGG | - | chr1.1:797002-797021 | MS.gene27054:CDS | 35.0% | |
| ! | TCAGATCATTAGTACTGAGT+GGG | - | chr1.1:795967-795986 | MS.gene27054:intron | 35.0% |
| ! | TTCAGATCATTAGTACTGAG+TGG | - | chr1.1:795966-795985 | MS.gene27054:intron | 35.0% |
| !! | AGAAACATGGCCTTGTAATT+TGG | + | chr1.1:795835-795854 | None:intergenic | 35.0% |
| !! | GAAACATGGCCTTGTAATTT+GGG | + | chr1.1:795834-795853 | None:intergenic | 35.0% |
| !! | GACTCAAAAGGTGTTATCTT+TGG | - | chr1.1:797030-797049 | MS.gene27054:CDS | 35.0% |
| !!! | GCTAAGGTTGCTGTTATTTT+AGG | - | chr1.1:795765-795784 | MS.gene27054:intron | 35.0% |
| !!! | GTTGCTGTTATTTTAGGAAC+TGG | - | chr1.1:795771-795790 | MS.gene27054:intron | 35.0% |
| AATGGAACAAGTGAGTGTCA+AGG | + | chr1.1:796891-796910 | None:intergenic | 40.0% | |
| ATGGAACAAGTGAGTGTCAA+GGG | + | chr1.1:796890-796909 | None:intergenic | 40.0% | |
| ATTGTCGTAGTATTCTGCTC+CGG | + | chr1.1:795742-795761 | None:intergenic | 40.0% | |
| GCTAGTCAATATGGCTAAAG+AGG | - | chr1.1:796229-796248 | MS.gene27054:CDS | 40.0% | |
| GTCAATATGGCTAAAGAGGA+AGG | - | chr1.1:796233-796252 | MS.gene27054:CDS | 40.0% | |
| TGCAAGTAAGTCCTGTATTG+AGG | + | chr1.1:797102-797121 | None:intergenic | 40.0% | |
| TTACCCCTGCTTTATCATAG+AGG | + | chr1.1:796749-796768 | None:intergenic | 40.0% | |
| TTCATACAAACCCCCATCAA+TGG | + | chr1.1:797073-797092 | None:intergenic | 40.0% | |
| TTCTGACCATATAGTGACCA+AGG | + | chr1.1:796319-796338 | None:intergenic | 40.0% | |
| ! | AGTGCCATTCCCAAATTACA+AGG | - | chr1.1:795822-795841 | MS.gene27054:intron | 40.0% |
| ! | CAGATCATTAGTACTGAGTG+GGG | - | chr1.1:795968-795987 | MS.gene27054:intron | 40.0% |
| ! | GGTGTTATCTTTGGAAAGAG+AGG | - | chr1.1:797039-797058 | MS.gene27054:CDS | 40.0% |
| !! | AAAGATGGTTCAGGTATTGG+AGG | - | chr1.1:797183-797202 | MS.gene27054:intron | 40.0% |
| !! | ATGGCCTTGTAATTTGGGAA+TGG | + | chr1.1:795829-795848 | None:intergenic | 40.0% |
| AATCCCTACAATTCCTGCAC+CGG | + | chr1.1:796992-797011 | None:intergenic | 45.0% | |
| CAAGGCCATGTTTCTTCTTC+TGG | - | chr1.1:795840-795859 | MS.gene27054:CDS | 45.0% | |
| CCCTCCTCTATGATAAAGCA+GGG | - | chr1.1:796742-796761 | MS.gene27054:intron | 45.0% | |
| CCCTGCTTTATCATAGAGGA+GGG | + | chr1.1:796745-796764 | None:intergenic | 45.0% | |
| CCTCCTCTATGATAAAGCAG+GGG | - | chr1.1:796743-796762 | MS.gene27054:intron | 45.0% | |
| CGAAAACTTACATGGTGACC+AGG | + | chr1.1:796058-796077 | None:intergenic | 45.0% | |
| CGATGGTGCGAAAACTTACA+TGG | + | chr1.1:796066-796085 | None:intergenic | 45.0% | |
| CTGGCGATTTACAAGCAGTT+GGG | - | chr1.1:796718-796737 | MS.gene27054:intron | 45.0% | |
| GACACAATTGTAAAGCGAGG+TGG | - | chr1.1:796959-796978 | MS.gene27054:intron | 45.0% | |
| GACACTCACTTGTTCCATTC+AGG | - | chr1.1:796892-796911 | MS.gene27054:intron | 45.0% | |
| GAGACGAGTGCTAGTCAATA+TGG | - | chr1.1:796220-796239 | MS.gene27054:CDS | 45.0% | |
| GATAGAGAAATGGATGCTGC+TGG | - | chr1.1:796025-796044 | MS.gene27054:intron | 45.0% | |
| GATGCTGCTGGTATAAATCC+TGG | - | chr1.1:796037-796056 | MS.gene27054:intron | 45.0% | |
| GCCAGAATTATCTTGCTGCA+TGG | + | chr1.1:796703-796722 | None:intergenic | 45.0% | |
| GCCATGCAGCAAGATAATTC+TGG | - | chr1.1:796699-796718 | MS.gene27054:intron | 45.0% | |
| TCCCTCCTCTATGATAAAGC+AGG | - | chr1.1:796741-796760 | MS.gene27054:intron | 45.0% | |
| TCTGGCGATTTACAAGCAGT+TGG | - | chr1.1:796717-796736 | MS.gene27054:intron | 45.0% | |
| TGCGACACAATTGTAAAGCG+AGG | - | chr1.1:796956-796975 | MS.gene27054:intron | 45.0% | |
| !! | AGAGGTGTTGTTGCCATTGA+TGG | - | chr1.1:797057-797076 | MS.gene27054:CDS | 45.0% |
| !! | AGGTATTGGAGGTGCTCTAT+TGG | - | chr1.1:797194-797213 | MS.gene27054:intron | 45.0% |
| !! | AGGTGTTGTTGCCATTGATG+GGG | - | chr1.1:797059-797078 | MS.gene27054:CDS | 45.0% |
| !! | GAGGTGTTGTTGCCATTGAT+GGG | - | chr1.1:797058-797077 | MS.gene27054:CDS | 45.0% |
| !!! | GAGTGGGGTGCTTTTTCAAA+TGG | - | chr1.1:795983-796002 | MS.gene27054:intron | 45.0% |
| !! | AAAAAATAAAATAGTATAAA+CGG | + | chr1.1:796509-796528 | None:intergenic | 5.0% |
| CCCCTGCTTTATCATAGAGG+AGG | + | chr1.1:796746-796765 | None:intergenic | 50.0% | |
| GATACTGTCGGAACACTAGC+CGG | - | chr1.1:795720-795739 | MS.gene27054:intron | 50.0% | |
| TTGCCGGTGCAGGAATTGTA+GGG | - | chr1.1:796986-797005 | MS.gene27054:CDS | 50.0% | |
| !! | GGTGTTGTTGCCATTGATGG+GGG | - | chr1.1:797060-797079 | MS.gene27054:CDS | 50.0% |
| CTTGCCGGTGCAGGAATTGT+AGG | - | chr1.1:796985-797004 | MS.gene27054:CDS | 55.0% | |
| TGCTGCATGGCGCTTAGATC+CGG | + | chr1.1:796690-796709 | None:intergenic | 55.0% | |
| ! | AAAGCGAGGTGGTAGCTTGC+CGG | - | chr1.1:796970-796989 | MS.gene27054:CDS | 55.0% |
| CTGCATGGCGCTTAGATCCG+GGG | + | chr1.1:796688-796707 | None:intergenic | 60.0% | |
| GCTGCATGGCGCTTAGATCC+GGG | + | chr1.1:796689-796708 | None:intergenic | 60.0% | |
| ! | AGGTGGTAGCTTGCCGGTGC+AGG | - | chr1.1:796976-796995 | MS.gene27054:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 795590 | 797248 | 795590 | ID=MS.gene27054 |
| chr1.1 | mRNA | 795590 | 797248 | 795590 | ID=MS.gene27054.t1;Parent=MS.gene27054 |
| chr1.1 | exon | 797231 | 797248 | 797231 | ID=MS.gene27054.t1.exon1;Parent=MS.gene27054.t1 |
| chr1.1 | CDS | 797231 | 797248 | 797231 | ID=cds.MS.gene27054.t1;Parent=MS.gene27054.t1 |
| chr1.1 | exon | 796969 | 797124 | 796969 | ID=MS.gene27054.t1.exon2;Parent=MS.gene27054.t1 |
| chr1.1 | CDS | 796969 | 797124 | 796969 | ID=cds.MS.gene27054.t1;Parent=MS.gene27054.t1 |
| chr1.1 | exon | 796772 | 796867 | 796772 | ID=MS.gene27054.t1.exon3;Parent=MS.gene27054.t1 |
| chr1.1 | CDS | 796772 | 796867 | 796772 | ID=cds.MS.gene27054.t1;Parent=MS.gene27054.t1 |
| chr1.1 | exon | 796584 | 796662 | 796584 | ID=MS.gene27054.t1.exon4;Parent=MS.gene27054.t1 |
| chr1.1 | CDS | 796584 | 796662 | 796584 | ID=cds.MS.gene27054.t1;Parent=MS.gene27054.t1 |
| chr1.1 | exon | 796074 | 796288 | 796074 | ID=MS.gene27054.t1.exon5;Parent=MS.gene27054.t1 |
| chr1.1 | CDS | 796074 | 796288 | 796074 | ID=cds.MS.gene27054.t1;Parent=MS.gene27054.t1 |
| chr1.1 | exon | 795836 | 795924 | 795836 | ID=MS.gene27054.t1.exon6;Parent=MS.gene27054.t1 |
| chr1.1 | CDS | 795836 | 795924 | 795836 | ID=cds.MS.gene27054.t1;Parent=MS.gene27054.t1 |
| chr1.1 | exon | 795590 | 795728 | 795590 | ID=MS.gene27054.t1.exon7;Parent=MS.gene27054.t1 |
| chr1.1 | CDS | 795590 | 795728 | 795590 | ID=cds.MS.gene27054.t1;Parent=MS.gene27054.t1 |
| Gene Sequence |
| Protein sequence |
