Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28224.t1 | XP_003598994.1 | 93.9 | 670 | 35 | 2 | 1 | 669 | 1 | 665 | 0.00E+00 | 1122.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28224.t1 | G7IZA9 | 93.9 | 670 | 35 | 2 | 1 | 669 | 1 | 665 | 0.0e+00 | 1122.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049153 | MS.gene28224 | 0.808441 | 3.09E-50 | -1.69E-46 |
| MS.gene049195 | MS.gene28224 | 0.800881 | 1.17E-48 | -1.69E-46 |
| MS.gene04933 | MS.gene28224 | 0.823916 | 1.07E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene28224 | 0.800083 | 1.70E-48 | -1.69E-46 |
| MS.gene049993 | MS.gene28224 | 0.803822 | 2.90E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene28224 | 0.808938 | 2.42E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene28224 | 0.83264 | 8.42E-56 | -1.69E-46 |
| MS.gene050228 | MS.gene28224 | 0.82417 | 9.33E-54 | -1.69E-46 |
| MS.gene050330 | MS.gene28224 | -0.806889 | 6.61E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene28224 | 0.836273 | 1.03E-56 | -1.69E-46 |
| MS.gene050787 | MS.gene28224 | 0.805832 | 1.10E-49 | -1.69E-46 |
| MS.gene050820 | MS.gene28224 | 0.829803 | 4.19E-55 | -1.69E-46 |
| MS.gene051208 | MS.gene28224 | 0.800915 | 1.15E-48 | -1.69E-46 |
| MS.gene051257 | MS.gene28224 | 0.801675 | 8.05E-49 | -1.69E-46 |
| MS.gene051582 | MS.gene28224 | 0.809628 | 1.72E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene28224 | 0.836344 | 9.89E-57 | -1.69E-46 |
| MS.gene051983 | MS.gene28224 | 0.848805 | 4.85E-60 | -1.69E-46 |
| MS.gene052011 | MS.gene28224 | -0.84334 | 1.49E-58 | -1.69E-46 |
| MS.gene052077 | MS.gene28224 | 0.805758 | 1.14E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene28224 | 0.815448 | 9.20E-52 | -1.69E-46 |
| MS.gene052389 | MS.gene28224 | 0.819005 | 1.46E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene28224 | 0.8422 | 2.99E-58 | -1.69E-46 |
| MS.gene054183 | MS.gene28224 | 0.834897 | 2.30E-56 | -1.69E-46 |
| MS.gene054473 | MS.gene28224 | 0.810956 | 8.91E-51 | -1.69E-46 |
| MS.gene054719 | MS.gene28224 | 0.821954 | 3.07E-53 | -1.69E-46 |
| MS.gene054918 | MS.gene28224 | 0.824227 | 9.05E-54 | -1.69E-46 |
| MS.gene054942 | MS.gene28224 | 0.810638 | 1.04E-50 | -1.69E-46 |
| MS.gene054983 | MS.gene28224 | 0.811215 | 7.83E-51 | -1.69E-46 |
| MS.gene056087 | MS.gene28224 | 0.808603 | 2.86E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene28224 | 0.851214 | 1.03E-60 | -1.69E-46 |
| MS.gene057121 | MS.gene28224 | 0.842368 | 2.70E-58 | -1.69E-46 |
| MS.gene057245 | MS.gene28224 | 0.806326 | 8.69E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene28224 | 0.806995 | 6.28E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene28224 | 0.807055 | 6.09E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene28224 | 0.856219 | 3.73E-62 | -1.69E-46 |
| MS.gene058220 | MS.gene28224 | 0.805456 | 1.32E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene28224 | 0.834534 | 2.83E-56 | -1.69E-46 |
| MS.gene058736 | MS.gene28224 | 0.803484 | 3.41E-49 | -1.69E-46 |
| MS.gene058739 | MS.gene28224 | 0.801794 | 7.61E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene28224 | 0.837854 | 4.07E-57 | -1.69E-46 |
| MS.gene059247 | MS.gene28224 | 0.836388 | 9.64E-57 | -1.69E-46 |
| MS.gene059285 | MS.gene28224 | 0.804109 | 2.53E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene28224 | 0.803879 | 2.82E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene28224 | 0.84132 | 5.11E-58 | -1.69E-46 |
| MS.gene061114 | MS.gene28224 | -0.876219 | 1.66E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28224.t1 | MTR_3g025870 | 93.881 | 670 | 35 | 2 | 1 | 669 | 1 | 665 | 0.0 | 1264 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28224.t1 | AT5G61040 | 31.373 | 714 | 315 | 23 | 1 | 666 | 1 | 587 | 3.28e-72 | 244 |
| MS.gene28224.t1 | AT5G08010 | 28.940 | 698 | 325 | 17 | 1 | 664 | 1 | 561 | 5.17e-54 | 194 |
Find 117 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTTAAAGATCCAATTT+TGG | 0.143154 | 3.3:-17726373 | None:intergenic |
| TTCATCAAGTTTCATCTTCT+TGG | 0.154558 | 3.3:-17726397 | None:intergenic |
| ACCTGATAGGTTGAGAATTA+AGG | 0.176647 | 3.3:-17729196 | None:intergenic |
| GTTCCTTCCTTGCCCAAAAT+TGG | 0.190143 | 3.3:+17726360 | MS.gene28224:CDS |
| AAAGACATATTCTTCCATTT+TGG | 0.197205 | 3.3:-17726175 | None:intergenic |
| ACCATATGATGATAAGTTTA+AGG | 0.206883 | 3.3:+17725948 | MS.gene28224:CDS |
| CAACTTTCTAAGGAATTTAA+TGG | 0.229860 | 3.3:-17726123 | None:intergenic |
| GGGTTGTTTGCGGGAGGTTA+AGG | 0.240369 | 3.3:-17725725 | None:intergenic |
| GAGCAAAATATTGGTAGTTT+TGG | 0.248009 | 3.3:+17725988 | MS.gene28224:CDS |
| TTCAGTCTTGGGATTTCTCT+TGG | 0.270448 | 3.3:+17727600 | MS.gene28224:CDS |
| GGTTGTTTGCGGGAGGTTAA+GGG | 0.271702 | 3.3:-17725724 | None:intergenic |
| CAAAGAATCATATGATAAAA+AGG | 0.284476 | 3.3:+17727866 | MS.gene28224:CDS |
| CATCTTTATTAATTCTTCAT+AGG | 0.285722 | 3.3:-17729244 | None:intergenic |
| TTCCTTAGAAAGTTGTTTCA+TGG | 0.286371 | 3.3:+17726131 | MS.gene28224:CDS |
| CGGCGTTTCTCTTCAGTCTT+GGG | 0.311500 | 3.3:+17727589 | MS.gene28224:CDS |
| ACGTCTCCGGGGTTGTTTGC+GGG | 0.313131 | 3.3:-17725734 | None:intergenic |
| CCTGATAGGTTGAGAATTAA+GGG | 0.320911 | 3.3:-17729195 | None:intergenic |
| TTATCATCATATGGTGATAA+TGG | 0.326001 | 3.3:-17725940 | None:intergenic |
| GAGTTACAAAATGAAAATTA+TGG | 0.330169 | 3.3:+17727750 | MS.gene28224:CDS |
| CTGGTTATTTAGCTAAATAT+TGG | 0.333394 | 3.3:+17725617 | MS.gene28224:CDS |
| CCGGCGTTTCTCTTCAGTCT+TGG | 0.340040 | 3.3:+17727588 | MS.gene28224:CDS |
| CCAGATGAAAGTAAAGTCTT+TGG | 0.340166 | 3.3:+17729080 | MS.gene28224:CDS |
| AGCCATGAAACAACTTTCTA+AGG | 0.343642 | 3.3:-17726133 | None:intergenic |
| CCCTTAATTCTCAACCTATC+AGG | 0.358072 | 3.3:+17729195 | MS.gene28224:CDS |
| CCAAAGACTTTACTTTCATC+TGG | 0.358080 | 3.3:-17729080 | None:intergenic |
| CTTCAAGAGCTTCACCTGAT+AGG | 0.366603 | 3.3:-17729209 | None:intergenic |
| ATTCCTATCCACAACTCTTT+CGG | 0.369194 | 3.3:+17726051 | MS.gene28224:CDS |
| AAAACGTTTCGTTGAGAGAA+AGG | 0.374754 | 3.3:-17726082 | None:intergenic |
| GATGGAAATGAGCAAAATAT+TGG | 0.379518 | 3.3:+17725979 | MS.gene28224:CDS |
| AAGGTCCGCTTTCACATGAT+TGG | 0.381776 | 3.3:+17729322 | MS.gene28224:CDS |
| ATGTAGCTCCTTACCATTGA+AGG | 0.383984 | 3.3:-17727796 | None:intergenic |
| ATATAAAGAGCATGCCAAAA+TGG | 0.389469 | 3.3:+17726161 | MS.gene28224:CDS |
| GAAGCTGAACTTGAGAGGTT+AGG | 0.389764 | 3.3:+17727933 | MS.gene28224:CDS |
| AGTGGAAAACTCACTCAATA+TGG | 0.390330 | 3.3:+17726465 | MS.gene28224:CDS |
| TCAGTCTTGGGATTTCTCTT+GGG | 0.395373 | 3.3:+17727601 | MS.gene28224:CDS |
| TGATTCTTTGCATTCTACTC+TGG | 0.395507 | 3.3:-17727853 | None:intergenic |
| GGAGACGTGGCTTCTTATAC+AGG | 0.396555 | 3.3:+17725841 | MS.gene28224:CDS |
| AAGCTGAACTTGAGAGGTTA+GGG | 0.400444 | 3.3:+17727934 | MS.gene28224:CDS |
| GGTGAAACTGCATAGTTTGC+AGG | 0.405373 | 3.3:-17728970 | None:intergenic |
| GTTGTGGATAGGAATCAATT+TGG | 0.417343 | 3.3:-17726043 | None:intergenic |
| TCCTTAAACTTATCATCATA+TGG | 0.430668 | 3.3:-17725949 | None:intergenic |
| CACGTCTCCGGGGTTGTTTG+CGG | 0.439128 | 3.3:-17725735 | None:intergenic |
| GTTGTTTGCGGGAGGTTAAG+GGG | 0.443607 | 3.3:-17725723 | None:intergenic |
| CAGTGCATTGACTGGAAGTA+AGG | 0.443744 | 3.3:+17726284 | MS.gene28224:CDS |
| TCCTTGGATGGTCCTTCGAC+AGG | 0.443961 | 3.3:+17725820 | MS.gene28224:CDS |
| ATGAAACTTGATGAAGTTGA+TGG | 0.445180 | 3.3:+17726405 | MS.gene28224:CDS |
| CGAAATAGCCTTGTTGTAGA+TGG | 0.445588 | 3.3:-17726213 | None:intergenic |
| TCTAGTGAATTGAATGTTAG+TGG | 0.446663 | 3.3:+17729396 | MS.gene28224:CDS |
| CTCTGAAGACAAATGATAAG+AGG | 0.447999 | 3.3:-17725665 | None:intergenic |
| GATTCTTTGCATTCTACTCT+GGG | 0.455473 | 3.3:-17727852 | None:intergenic |
| CTTTCACTCGTGTTTCGAGT+TGG | 0.461666 | 3.3:-17729032 | None:intergenic |
| GTTCTCAGACGCGAGTTCCT+TGG | 0.462611 | 3.3:+17725804 | MS.gene28224:CDS |
| CAACCCCGGAGACGTGAAAA+GGG | 0.464778 | 3.3:+17725742 | MS.gene28224:CDS |
| ATTGTTGAAAGAACCAAGAA+AGG | 0.468316 | 3.3:+17729474 | MS.gene28224:CDS |
| GCTCGGATAATTTCCTATCC+AGG | 0.472177 | 3.3:-17727977 | None:intergenic |
| ACAACCCCGGAGACGTGAAA+AGG | 0.475375 | 3.3:+17725741 | MS.gene28224:CDS |
| AAGTTTAAGGATGGTGAAGA+TGG | 0.478207 | 3.3:+17725961 | MS.gene28224:CDS |
| ACATGTGATCATTCCTTCAA+TGG | 0.489917 | 3.3:+17727783 | MS.gene28224:CDS |
| CTCTTATCATTTGTCTTCAG+AGG | 0.490889 | 3.3:+17725666 | MS.gene28224:CDS |
| TAAGGGGCTGCTAAAGGAAT+CGG | 0.497732 | 3.3:-17725707 | None:intergenic |
| ATCAATTTGGCAGAAAACTC+AGG | 0.499977 | 3.3:-17726030 | None:intergenic |
| CCATGATGTTAGTTTCCAAA+AGG | 0.500268 | 3.3:+17729110 | MS.gene28224:CDS |
| GGACATGAATGCGTCAAGCC+TGG | 0.500491 | 3.3:+17727959 | MS.gene28224:CDS |
| AAAATTCTTGCAGATTGATC+CGG | 0.500918 | 3.3:+17728867 | MS.gene28224:intron |
| ACTTTGATCAGTGCATTGAC+TGG | 0.507228 | 3.3:+17726276 | MS.gene28224:CDS |
| GGAGGTTAAGGGGCTGCTAA+AGG | 0.508804 | 3.3:-17725713 | None:intergenic |
| GTTGAAGCAGAATGAGAACT+TGG | 0.515778 | 3.3:+17727677 | MS.gene28224:CDS |
| AGGTGGAGAGGCTATTGATA+AGG | 0.520272 | 3.3:+17729448 | MS.gene28224:CDS |
| AATGGTCTACTAACATGCTC+CGG | 0.522168 | 3.3:-17726105 | None:intergenic |
| GTCATCAATAAGTTTCCTCT+AGG | 0.524349 | 3.3:-17729144 | None:intergenic |
| TCATCAATAAGTTTCCTCTA+GGG | 0.524601 | 3.3:-17729143 | None:intergenic |
| ACTGCATAGTTTGCAGGAAG+AGG | 0.525668 | 3.3:-17728964 | None:intergenic |
| ATACGATTTCGCGACAATGT+TGG | 0.527511 | 3.3:+17729362 | MS.gene28224:CDS |
| TGATCATTCCTTCAATGGTA+AGG | 0.528000 | 3.3:+17727788 | MS.gene28224:CDS |
| GATTATAAGCTGCATAAAGC+TGG | 0.528729 | 3.3:+17726306 | MS.gene28224:CDS |
| ATAGGTTGAGAATTAAGGGC+TGG | 0.530163 | 3.3:-17729191 | None:intergenic |
| TTTCGAGCTGACACGGCTAG+TGG | 0.539697 | 3.3:+17728919 | MS.gene28224:CDS |
| TGAATGTGATAATGAGGAGG+TGG | 0.547622 | 3.3:+17729431 | MS.gene28224:CDS |
| GTGATAATGAGGAGGTGGAG+AGG | 0.548162 | 3.3:+17729436 | MS.gene28224:CDS |
| TCCTGTCGAAGGACCATCCA+AGG | 0.560608 | 3.3:-17725821 | None:intergenic |
| TGTCCGAAAGAGTTGTGGAT+AGG | 0.561918 | 3.3:-17726054 | None:intergenic |
| GCAAAATCTGCTACAAACTC+CGG | 0.565111 | 3.3:-17728886 | None:intergenic |
| TAGGTTGAGAATTAAGGGCT+GGG | 0.566236 | 3.3:-17729190 | None:intergenic |
| GTCGTCACTATCATGAATGA+TGG | 0.571660 | 3.3:-17729295 | None:intergenic |
| TGAATGCGTCAAGCCTGGAT+AGG | 0.575622 | 3.3:+17727964 | MS.gene28224:CDS |
| TGAACTTGAGAGGTTAGGGT+TGG | 0.576928 | 3.3:+17727938 | MS.gene28224:CDS |
| CATGATAGTGACGACAAAGA+AGG | 0.582628 | 3.3:+17729303 | MS.gene28224:CDS |
| AGGTGAGTTTCGAGCTGACA+CGG | 0.586885 | 3.3:+17728912 | MS.gene28224:CDS |
| TATGCTTACCTCAACAAGCT+CGG | 0.589234 | 3.3:-17727994 | None:intergenic |
| GAAATTATCCGAGCTTGTTG+AGG | 0.590101 | 3.3:+17727986 | MS.gene28224:CDS |
| TATGATGATAAGTTTAAGGA+TGG | 0.591511 | 3.3:+17725952 | MS.gene28224:CDS |
| AGCTTGAAGCTGAACTTGAG+AGG | 0.594301 | 3.3:+17727928 | MS.gene28224:CDS |
| TCAGACGCGAGTTCCTTGGA+TGG | 0.600880 | 3.3:+17725808 | MS.gene28224:CDS |
| GATTTCGCGACAATGTTGGA+AGG | 0.608266 | 3.3:+17729366 | MS.gene28224:CDS |
| GAAGCCACGTCTCCTGTCGA+AGG | 0.618035 | 3.3:-17725832 | None:intergenic |
| GCGTTCCAATCATGTGAAAG+CGG | 0.618221 | 3.3:-17729327 | None:intergenic |
| TAACCTCCCGCAAACAACCC+CGG | 0.618799 | 3.3:+17725728 | MS.gene28224:CDS |
| CATCAATAAGTTTCCTCTAG+GGG | 0.619494 | 3.3:-17729142 | None:intergenic |
| GTTGTAGATGGTGATGAAAG+AGG | 0.619822 | 3.3:-17726201 | None:intergenic |
| AGGAAGAGGTGTGGTGACAT+TGG | 0.623249 | 3.3:-17728950 | None:intergenic |
| ATTTCGCGACAATGTTGGAA+GGG | 0.624496 | 3.3:+17729367 | MS.gene28224:CDS |
| ATCAATAAGTTTCCTCTAGG+GGG | 0.628805 | 3.3:-17729141 | None:intergenic |
| AGGCTATTTCGTGTTAGCAA+CGG | 0.629648 | 3.3:+17726225 | MS.gene28224:CDS |
| TGGTCCTTCGACAGGAGACG+TGG | 0.633277 | 3.3:+17725828 | MS.gene28224:CDS |
| GAAAGATTCAATGACCGTGA+AGG | 0.633573 | 3.3:+17727728 | MS.gene28224:CDS |
| CCAAGACTGAAGAGAAACGC+CGG | 0.633812 | 3.3:-17727588 | None:intergenic |
| TCTCCGGGGTTGTTTGCGGG+AGG | 0.635252 | 3.3:-17725731 | None:intergenic |
| CTATCATGAATGATGGCTGA+TGG | 0.644869 | 3.3:-17729288 | None:intergenic |
| AAGTTGTGAATGTGATAATG+AGG | 0.660939 | 3.3:+17729425 | MS.gene28224:CDS |
| AACGGTAGCCGAATACTCAA+CGG | 0.666934 | 3.3:+17726243 | MS.gene28224:CDS |
| GAGACGTGGCTTCTTATACA+GGG | 0.671853 | 3.3:+17725842 | MS.gene28224:CDS |
| TGGGATAATAACTTCCAACA+TGG | 0.689562 | 3.3:+17727620 | MS.gene28224:CDS |
| AAACGTAAACTCAGTTCATG+CGG | 0.690091 | 3.3:-17728991 | None:intergenic |
| AAGTTGATGGACGAAGTCGA+AGG | 0.694876 | 3.3:+17726418 | MS.gene28224:CDS |
| TTTCATCACCATCTACAACA+AGG | 0.703428 | 3.3:+17726205 | MS.gene28224:CDS |
| TTGTGAATGTGATAATGAGG+AGG | 0.705699 | 3.3:+17729428 | MS.gene28224:CDS |
| ATAGTTTGCAGGAAGAGGTG+TGG | 0.753936 | 3.3:-17728959 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTAATATATGAAAAAT+GGG | + | chr3.3:17728255-17728274 | MS.gene28224:intron | 10.0% |
| !!! | TAATATCTTTAAAATATTGA+AGG | - | chr3.3:17727191-17727210 | None:intergenic | 10.0% |
| !!! | TAGTTTTAATATATGAAAAA+TGG | + | chr3.3:17728254-17728273 | MS.gene28224:intron | 10.0% |
| !! | AAAAAAGATATTGTATTCTA+TGG | + | chr3.3:17729518-17729537 | MS.gene28224:CDS | 15.0% |
| !! | TACAAAAATAAGTATATGTA+TGG | - | chr3.3:17728596-17728615 | None:intergenic | 15.0% |
| !! | CAAAGAATCATATGATAAAA+AGG | + | chr3.3:17727866-17727885 | MS.gene28224:CDS | 20.0% |
| !! | CATCTTTATTAATTCTTCAT+AGG | - | chr3.3:17729247-17729266 | None:intergenic | 20.0% |
| !! | GAGTTACAAAATGAAAATTA+TGG | + | chr3.3:17727750-17727769 | MS.gene28224:CDS | 20.0% |
| !! | TAAATATTGGAAAAAGAGTT+TGG | + | chr3.3:17725630-17725649 | MS.gene28224:CDS | 20.0% |
| !! | TTCAAAGAATGGAATTAAAA+TGG | + | chr3.3:17728135-17728154 | MS.gene28224:intron | 20.0% |
| !!! | AAAAGAAAGAGTTCTAAAAA+AGG | - | chr3.3:17726671-17726690 | None:intergenic | 20.0% |
| !!! | AAGATGTTTTTTTAGATAGA+AGG | + | chr3.3:17725767-17725786 | MS.gene28224:CDS | 20.0% |
| !!! | AGATGTTTTTTTAGATAGAA+GGG | + | chr3.3:17725768-17725787 | MS.gene28224:CDS | 20.0% |
| !!! | ATCATTTAAAGATCCAATTT+TGG | - | chr3.3:17726376-17726395 | None:intergenic | 20.0% |
| !!! | TCATTTAAAGATCCAATTTT+GGG | - | chr3.3:17726375-17726394 | None:intergenic | 20.0% |
| !!! | TTGTAATTTTGATTAACTCA+AGG | - | chr3.3:17727269-17727288 | None:intergenic | 20.0% |
| !!! | TTTTTTGCATTTTGAAAAAG+AGG | - | chr3.3:17729504-17729523 | None:intergenic | 20.0% |
| ! | AAACATTTCAAACACAACAT+AGG | - | chr3.3:17726523-17726542 | None:intergenic | 25.0% |
| ! | AATATTGTTAGTGTGACAAT+GGG | + | chr3.3:17728832-17728851 | MS.gene28224:intron | 25.0% |
| ! | ACCATATGATGATAAGTTTA+AGG | + | chr3.3:17725948-17725967 | MS.gene28224:CDS | 25.0% |
| ! | ATAATTTCCTCAAGAATAAC+AGG | - | chr3.3:17727034-17727053 | None:intergenic | 25.0% |
| ! | ATAGAATGAAAAGAAGTCTA+TGG | - | chr3.3:17727070-17727089 | None:intergenic | 25.0% |
| ! | ATATGAGATTTACTTTACAC+TGG | - | chr3.3:17728771-17728790 | None:intergenic | 25.0% |
| ! | CAATATGATCTCTATATACA+AGG | - | chr3.3:17728179-17728198 | None:intergenic | 25.0% |
| ! | CTAATGGAAATTTCAAAGAA+TGG | + | chr3.3:17728124-17728143 | MS.gene28224:intron | 25.0% |
| ! | CTGGTTATTTAGCTAAATAT+TGG | + | chr3.3:17725617-17725636 | MS.gene28224:CDS | 25.0% |
| ! | GAAAAACACAAAAATGTAGT+TGG | + | chr3.3:17726333-17726352 | MS.gene28224:CDS | 25.0% |
| ! | TACTAACGAAAGATATATTC+AGG | + | chr3.3:17727399-17727418 | MS.gene28224:intron | 25.0% |
| ! | TAGAACTTGAAAGCAAAATA+AGG | - | chr3.3:17728707-17728726 | None:intergenic | 25.0% |
| ! | TATGATGATAAGTTTAAGGA+TGG | + | chr3.3:17725952-17725971 | MS.gene28224:CDS | 25.0% |
| ! | TATTTAAGCTGTTTAGTTAC+TGG | - | chr3.3:17726848-17726867 | None:intergenic | 25.0% |
| ! | TCCTTAAACTTATCATCATA+TGG | - | chr3.3:17725952-17725971 | None:intergenic | 25.0% |
| ! | TTATCATCATATGGTGATAA+TGG | - | chr3.3:17725943-17725962 | None:intergenic | 25.0% |
| ! | TTTGTACTTCTAGTAGATAT+TGG | + | chr3.3:17728610-17728629 | MS.gene28224:intron | 25.0% |
| !! | AAAGACATATTCTTCCATTT+TGG | - | chr3.3:17726178-17726197 | None:intergenic | 25.0% |
| !! | CAACTTTCTAAGGAATTTAA+TGG | - | chr3.3:17726126-17726145 | None:intergenic | 25.0% |
| !!! | GATGTTTTTTTAGATAGAAG+GGG | + | chr3.3:17725769-17725788 | MS.gene28224:CDS | 25.0% |
| !!! | TGTTTTTTCGTTAGTTAGTT+TGG | + | chr3.3:17727334-17727353 | MS.gene28224:intron | 25.0% |
| !!! | TTGCAATATAACGGATTTTT+AGG | - | chr3.3:17726616-17726635 | None:intergenic | 25.0% |
| !!! | TTTTGCTTTTTAACTGGTTT+AGG | + | chr3.3:17727164-17727183 | MS.gene28224:intron | 25.0% |
| AAAATTCTTGCAGATTGATC+CGG | + | chr3.3:17728867-17728886 | MS.gene28224:intron | 30.0% | |
| AAACACAAAAATGTAGTTGG+AGG | + | chr3.3:17726336-17726355 | MS.gene28224:CDS | 30.0% | |
| AACACAAAAATGTAGTTGGA+GGG | + | chr3.3:17726337-17726356 | MS.gene28224:CDS | 30.0% | |
| ATATCATTCAGTGCATGTTT+GGG | + | chr3.3:17728319-17728338 | MS.gene28224:intron | 30.0% | |
| ATGAAACTTGATGAAGTTGA+TGG | + | chr3.3:17726405-17726424 | MS.gene28224:CDS | 30.0% | |
| ATTGTTGAAAGAACCAAGAA+AGG | + | chr3.3:17729474-17729493 | MS.gene28224:CDS | 30.0% | |
| CAAAATAAGGAATGCAACAT+TGG | - | chr3.3:17728694-17728713 | None:intergenic | 30.0% | |
| CAATATTGTTAGTGTGACAA+TGG | + | chr3.3:17728831-17728850 | MS.gene28224:intron | 30.0% | |
| CATTGAGTAAATAGTCACTT+TGG | - | chr3.3:17727480-17727499 | None:intergenic | 30.0% | |
| CTAAACAGCTTAAATATAGC+TGG | + | chr3.3:17726852-17726871 | MS.gene28224:intron | 30.0% | |
| CTGGAAAAAGAAACTTTGTA+TGG | - | chr3.3:17728752-17728771 | None:intergenic | 30.0% | |
| GATGGAAATGAGCAAAATAT+TGG | + | chr3.3:17725979-17725998 | MS.gene28224:CDS | 30.0% | |
| GCTATCAAAACAAACATACA+TGG | - | chr3.3:17728730-17728749 | None:intergenic | 30.0% | |
| TCATCAATAAGTTTCCTCTA+GGG | - | chr3.3:17729146-17729165 | None:intergenic | 30.0% | |
| TCTAGTAGATATTGGAATTG+TGG | + | chr3.3:17728618-17728637 | MS.gene28224:intron | 30.0% | |
| TCTAGTGAATTGAATGTTAG+TGG | + | chr3.3:17729396-17729415 | MS.gene28224:CDS | 30.0% | |
| TGGAAAAAGAGTTTGGAAAA+TGG | + | chr3.3:17725637-17725656 | MS.gene28224:CDS | 30.0% | |
| TTCATCAAGTTTCATCTTCT+TGG | - | chr3.3:17726400-17726419 | None:intergenic | 30.0% | |
| TTGTTTAGTACCAATGTGTT+TGG | - | chr3.3:17728481-17728500 | None:intergenic | 30.0% | |
| ! | AAGTTGTGAATGTGATAATG+AGG | + | chr3.3:17729425-17729444 | MS.gene28224:CDS | 30.0% |
| ! | AGCTATCAATATGCTTTTCA+GGG | - | chr3.3:17727830-17727849 | None:intergenic | 30.0% |
| ! | ATATAAAGAGCATGCCAAAA+TGG | + | chr3.3:17726161-17726180 | MS.gene28224:CDS | 30.0% |
| ! | TGTTAAGGTGAAAACTTTTG+AGG | - | chr3.3:17728209-17728228 | None:intergenic | 30.0% |
| ! | TTCATTTTGTAACTCCTTCA+CGG | - | chr3.3:17727745-17727764 | None:intergenic | 30.0% |
| ! | TTCCTTAGAAAGTTGTTTCA+TGG | + | chr3.3:17726131-17726150 | MS.gene28224:CDS | 30.0% |
| ! | TTTTGACAAAAGCTACACTT+TGG | - | chr3.3:17728403-17728422 | None:intergenic | 30.0% |
| !! | GAGCAAAATATTGGTAGTTT+TGG | + | chr3.3:17725988-17726007 | MS.gene28224:CDS | 30.0% |
| !! | TTCTCTTTTATTTGCCATGT+TGG | - | chr3.3:17727637-17727656 | None:intergenic | 30.0% |
| !! | TTTCATCTGGCTATTTTCAA+GGG | - | chr3.3:17729070-17729089 | None:intergenic | 30.0% |
| !!! | AAAGCGTTTTGCTTTTTAAC+TGG | + | chr3.3:17727158-17727177 | MS.gene28224:intron | 30.0% |
| !!! | ATTGGTAGTTTTGGCAATAA+TGG | + | chr3.3:17725997-17726016 | MS.gene28224:CDS | 30.0% |
| !!! | TTGGTAGTTTTGGCAATAAT+GGG | + | chr3.3:17725998-17726017 | MS.gene28224:CDS | 30.0% |
| !!! | TTTTCTGATGACTTGTTTAG+TGG | + | chr3.3:17726447-17726466 | MS.gene28224:CDS | 30.0% |
| !!! | TTTTTTAGATAGAAGGGGTT+CGG | + | chr3.3:17725774-17725793 | MS.gene28224:CDS | 30.0% |
| AAAAAGAGGAGAACCTTTCT+TGG | - | chr3.3:17729490-17729509 | None:intergenic | 35.0% | |
| AAAACGTTTCGTTGAGAGAA+AGG | - | chr3.3:17726085-17726104 | None:intergenic | 35.0% | |
| AAACACACCTGTTATTCTTG+AGG | + | chr3.3:17727024-17727043 | MS.gene28224:intron | 35.0% | |
| AAACGTAAACTCAGTTCATG+CGG | - | chr3.3:17728994-17729013 | None:intergenic | 35.0% | |
| AAGTTTAAGGATGGTGAAGA+TGG | + | chr3.3:17725961-17725980 | MS.gene28224:CDS | 35.0% | |
| ACACAAAAATGTAGTTGGAG+GGG | + | chr3.3:17726338-17726357 | MS.gene28224:CDS | 35.0% | |
| ACATGTGATCATTCCTTCAA+TGG | + | chr3.3:17727783-17727802 | MS.gene28224:CDS | 35.0% | |
| ACGTTCGTAATTATCAGATC+CGG | + | chr3.3:17727569-17727588 | MS.gene28224:intron | 35.0% | |
| ACTAACGAAAAAACACATCG+AGG | - | chr3.3:17727329-17727348 | None:intergenic | 35.0% | |
| ACTTGAACCAAACATAGCTA+TGG | - | chr3.3:17728800-17728819 | None:intergenic | 35.0% | |
| AGCCATGAAACAACTTTCTA+AGG | - | chr3.3:17726136-17726155 | None:intergenic | 35.0% | |
| AGTGGAAAACTCACTCAATA+TGG | + | chr3.3:17726465-17726484 | MS.gene28224:CDS | 35.0% | |
| ATCAATAAGTTTCCTCTAGG+GGG | - | chr3.3:17729144-17729163 | None:intergenic | 35.0% | |
| ATCAATTTGGCAGAAAACTC+AGG | - | chr3.3:17726033-17726052 | None:intergenic | 35.0% | |
| ATTCCTATCCACAACTCTTT+CGG | + | chr3.3:17726051-17726070 | MS.gene28224:CDS | 35.0% | |
| CAATCGCAGTTGCAATATAA+CGG | - | chr3.3:17726625-17726644 | None:intergenic | 35.0% | |
| CATCAATAAGTTTCCTCTAG+GGG | - | chr3.3:17729145-17729164 | None:intergenic | 35.0% | |
| CCAAAGACTTTACTTTCATC+TGG | - | chr3.3:17729083-17729102 | None:intergenic | 35.0% | |
| CCAGATGAAAGTAAAGTCTT+TGG | + | chr3.3:17729080-17729099 | MS.gene28224:CDS | 35.0% | |
| CTCTATATTGCTGGAAAATG+AGG | + | chr3.3:17726561-17726580 | MS.gene28224:intron | 35.0% | |
| CTCTTATCATTTGTCTTCAG+AGG | + | chr3.3:17725666-17725685 | MS.gene28224:CDS | 35.0% | |
| GATATCATTCAGTGCATGTT+TGG | + | chr3.3:17728318-17728337 | MS.gene28224:intron | 35.0% | |
| GATTATAAGCTGCATAAAGC+TGG | + | chr3.3:17726306-17726325 | MS.gene28224:CDS | 35.0% | |
| GATTCTTTGCATTCTACTCT+GGG | - | chr3.3:17727855-17727874 | None:intergenic | 35.0% | |
| GTCATCAATAAGTTTCCTCT+AGG | - | chr3.3:17729147-17729166 | None:intergenic | 35.0% | |
| GTTGTGGATAGGAATCAATT+TGG | - | chr3.3:17726046-17726065 | None:intergenic | 35.0% | |
| TGAAAAGAAGTCTATGGCAT+TGG | - | chr3.3:17727064-17727083 | None:intergenic | 35.0% | |
| TGATCATTCCTTCAATGGTA+AGG | + | chr3.3:17727788-17727807 | MS.gene28224:CDS | 35.0% | |
| TGATTCTTTGCATTCTACTC+TGG | - | chr3.3:17727856-17727875 | None:intergenic | 35.0% | |
| TGGGATAATAACTTCCAACA+TGG | + | chr3.3:17727620-17727639 | MS.gene28224:CDS | 35.0% | |
| TTTCATCACCATCTACAACA+AGG | + | chr3.3:17726205-17726224 | MS.gene28224:CDS | 35.0% | |
| ! | ACCTGATAGGTTGAGAATTA+AGG | - | chr3.3:17729199-17729218 | None:intergenic | 35.0% |
| ! | AGCATAACTGTCACATTTTC+CGG | + | chr3.3:17728011-17728030 | MS.gene28224:intron | 35.0% |
| ! | CATTTTCTCCGTTGAGTATT+CGG | - | chr3.3:17726254-17726273 | None:intergenic | 35.0% |
| ! | CCATGATGTTAGTTTCCAAA+AGG | + | chr3.3:17729110-17729129 | MS.gene28224:CDS | 35.0% |
| ! | CCTGATAGGTTGAGAATTAA+GGG | - | chr3.3:17729198-17729217 | None:intergenic | 35.0% |
| ! | CTCATTTTCCAGCAATATAG+AGG | - | chr3.3:17726563-17726582 | None:intergenic | 35.0% |
| ! | CTCTGAAGACAAATGATAAG+AGG | - | chr3.3:17725668-17725687 | None:intergenic | 35.0% |
| ! | GAGCTATCAATATGCTTTTC+AGG | - | chr3.3:17727831-17727850 | None:intergenic | 35.0% |
| ! | GCTATCAATATGCTTTTCAG+GGG | - | chr3.3:17727829-17727848 | None:intergenic | 35.0% |
| ! | GTATGGATTGACAATGTGTT+TGG | - | chr3.3:17728579-17728598 | None:intergenic | 35.0% |
| ! | TAAAGATCCAATTTTGGGCA+AGG | - | chr3.3:17726370-17726389 | None:intergenic | 35.0% |
| ! | TTGTGAATGTGATAATGAGG+AGG | + | chr3.3:17729428-17729447 | MS.gene28224:CDS | 35.0% |
| ! | TTTTGCTCCATAGCTATGTT+TGG | + | chr3.3:17728790-17728809 | MS.gene28224:intron | 35.0% |
| !! | CCTTTTGGAAACTAACATCA+TGG | - | chr3.3:17729113-17729132 | None:intergenic | 35.0% |
| !! | CTTTCATCTGGCTATTTTCA+AGG | - | chr3.3:17729071-17729090 | None:intergenic | 35.0% |
| !! | TCGTTAGTTAGTTTGGTTCT+TGG | + | chr3.3:17727341-17727360 | MS.gene28224:intron | 35.0% |
| AAGCTGAACTTGAGAGGTTA+GGG | + | chr3.3:17727934-17727953 | MS.gene28224:CDS | 40.0% | |
| AATGGTCTACTAACATGCTC+CGG | - | chr3.3:17726108-17726127 | None:intergenic | 40.0% | |
| ATACGATTTCGCGACAATGT+TGG | + | chr3.3:17729362-17729381 | MS.gene28224:CDS | 40.0% | |
| ATCATGCTGCAACTGAAATC+AGG | - | chr3.3:17728301-17728320 | None:intergenic | 40.0% | |
| ATGCGACTTCTGTTACAATC+AGG | + | chr3.3:17726747-17726766 | MS.gene28224:intron | 40.0% | |
| ATGTAGCTCCTTACCATTGA+AGG | - | chr3.3:17727799-17727818 | None:intergenic | 40.0% | |
| ATTTCGCGACAATGTTGGAA+GGG | + | chr3.3:17729367-17729386 | MS.gene28224:CDS | 40.0% | |
| CAATGTGTTTGGCAGAATCA+CGG | - | chr3.3:17728568-17728587 | None:intergenic | 40.0% | |
| CAATGTGTTTGGCAGAATCT+CGG | - | chr3.3:17728470-17728489 | None:intergenic | 40.0% | |
| CCCTTAATTCTCAACCTATC+AGG | + | chr3.3:17729195-17729214 | MS.gene28224:CDS | 40.0% | |
| CCGAAGACTTGTATAGTTAC+CGG | - | chr3.3:17728033-17728052 | None:intergenic | 40.0% | |
| CCGGTAACTATACAAGTCTT+CGG | + | chr3.3:17728030-17728049 | MS.gene28224:intron | 40.0% | |
| CTATCATGAATGATGGCTGA+TGG | - | chr3.3:17729291-17729310 | None:intergenic | 40.0% | |
| CTTGCAAACCTCTATATTGC+TGG | + | chr3.3:17726552-17726571 | MS.gene28224:intron | 40.0% | |
| CTTTGGTCCCTAAATGTTTG+AGG | - | chr3.3:17727463-17727482 | None:intergenic | 40.0% | |
| GAAAGATTCAATGACCGTGA+AGG | + | chr3.3:17727728-17727747 | MS.gene28224:CDS | 40.0% | |
| GAAATCAGGAAGAATGGATG+TGG | - | chr3.3:17728287-17728306 | None:intergenic | 40.0% | |
| GATACCGCCTCAAACATTTA+GGG | + | chr3.3:17727453-17727472 | MS.gene28224:intron | 40.0% | |
| GCAAAATCTGCTACAAACTC+CGG | - | chr3.3:17728889-17728908 | None:intergenic | 40.0% | |
| GCAACTGAAATCAGGAAGAA+TGG | - | chr3.3:17728293-17728312 | None:intergenic | 40.0% | |
| GTATGCACTGTCTTGACTAA+TGG | + | chr3.3:17728108-17728127 | MS.gene28224:intron | 40.0% | |
| GTCGTCACTATCATGAATGA+TGG | - | chr3.3:17729298-17729317 | None:intergenic | 40.0% | |
| GTTGAAGCAGAATGAGAACT+TGG | + | chr3.3:17727677-17727696 | MS.gene28224:CDS | 40.0% | |
| TATGCTTACCTCAACAAGCT+CGG | - | chr3.3:17727997-17728016 | None:intergenic | 40.0% | |
| TCAGTCTTGGGATTTCTCTT+GGG | + | chr3.3:17727601-17727620 | MS.gene28224:CDS | 40.0% | |
| TCTTCCTGCAAACTATGCAA+AGG | - | chr3.3:17728515-17728534 | None:intergenic | 40.0% | |
| TGATACCGCCTCAAACATTT+AGG | + | chr3.3:17727452-17727471 | MS.gene28224:intron | 40.0% | |
| TGTGTTGAGAGTAACACTGT+TGG | + | chr3.3:17726690-17726709 | MS.gene28224:intron | 40.0% | |
| TTCAGTCTTGGGATTTCTCT+TGG | + | chr3.3:17727600-17727619 | MS.gene28224:CDS | 40.0% | |
| TTGGAGCTTCAACAAAAGCA+AGG | - | chr3.3:17728384-17728403 | None:intergenic | 40.0% | |
| ! | ACTTTGATCAGTGCATTGAC+TGG | + | chr3.3:17726276-17726295 | MS.gene28224:CDS | 40.0% |
| ! | AGGCTATTTCGTGTTAGCAA+CGG | + | chr3.3:17726225-17726244 | MS.gene28224:CDS | 40.0% |
| ! | ATAGGTTGAGAATTAAGGGC+TGG | - | chr3.3:17729194-17729213 | None:intergenic | 40.0% |
| ! | CATGATAGTGACGACAAAGA+AGG | + | chr3.3:17729303-17729322 | MS.gene28224:CDS | 40.0% |
| ! | GTTGTAGATGGTGATGAAAG+AGG | - | chr3.3:17726204-17726223 | None:intergenic | 40.0% |
| ! | TAGGTTGAGAATTAAGGGCT+GGG | - | chr3.3:17729193-17729212 | None:intergenic | 40.0% |
| ! | TCTCTCAACGAAACGTTTTC+CGG | + | chr3.3:17726086-17726105 | MS.gene28224:CDS | 40.0% |
| ! | TGAATGTGATAATGAGGAGG+TGG | + | chr3.3:17729431-17729450 | MS.gene28224:CDS | 40.0% |
| ! | TGTGCTCTTGATAGTCAGTT+TGG | + | chr3.3:17727302-17727321 | MS.gene28224:intron | 40.0% |
| ! | TTTGCATAGTTTGCAGGAAG+AGG | + | chr3.3:17728514-17728533 | MS.gene28224:intron | 40.0% |
| ! | TTTGTAGCAGATTTTGCGCA+AGG | + | chr3.3:17728892-17728911 | MS.gene28224:CDS | 40.0% |
| ! | TTTTGAATTGCAGTCCGCAA+CGG | - | chr3.3:17726648-17726667 | None:intergenic | 40.0% |
| ! | TTTTGTGTCCGAAAGAGTTG+TGG | - | chr3.3:17726062-17726081 | None:intergenic | 40.0% |
| !! | CATGTTTGGGTTGGTGAATT+TGG | + | chr3.3:17728332-17728351 | MS.gene28224:intron | 40.0% |
| !! | CGAAATAGCCTTGTTGTAGA+TGG | - | chr3.3:17726216-17726235 | None:intergenic | 40.0% |
| !! | GAAATTATCCGAGCTTGTTG+AGG | + | chr3.3:17727986-17728005 | MS.gene28224:CDS | 40.0% |
| !! | TACCTGCATTTCTAGTAGCA+GGG | + | chr3.3:17726775-17726794 | MS.gene28224:intron | 40.0% |
| AAAAGCAAGGTGGCACAATG+TGG | - | chr3.3:17728371-17728390 | None:intergenic | 45.0% | |
| AACGGTAGCCGAATACTCAA+CGG | + | chr3.3:17726243-17726262 | MS.gene28224:CDS | 45.0% | |
| AAGGTCCGCTTTCACATGAT+TGG | + | chr3.3:17729322-17729341 | MS.gene28224:CDS | 45.0% | |
| AGCTTGAAGCTGAACTTGAG+AGG | + | chr3.3:17727928-17727947 | MS.gene28224:CDS | 45.0% | |
| AGGTGGAGAGGCTATTGATA+AGG | + | chr3.3:17729448-17729467 | MS.gene28224:CDS | 45.0% | |
| AGTGTGACAATGGGCGTTAA+TGG | + | chr3.3:17728841-17728860 | MS.gene28224:intron | 45.0% | |
| CATTCAGTGCATGTTTGGGT+TGG | + | chr3.3:17728323-17728342 | MS.gene28224:intron | 45.0% | |
| CGAGATTCTGCCAAACACAT+TGG | + | chr3.3:17728468-17728487 | MS.gene28224:intron | 45.0% | |
| CTTCAAGAGCTTCACCTGAT+AGG | - | chr3.3:17729212-17729231 | None:intergenic | 45.0% | |
| GAAGCTGAACTTGAGAGGTT+AGG | + | chr3.3:17727933-17727952 | MS.gene28224:CDS | 45.0% | |
| GAGACGTGGCTTCTTATACA+GGG | + | chr3.3:17725842-17725861 | MS.gene28224:CDS | 45.0% | |
| GAGCTTCAACAAAAGCAAGG+TGG | - | chr3.3:17728381-17728400 | None:intergenic | 45.0% | |
| GATTTCGCGACAATGTTGGA+AGG | + | chr3.3:17729366-17729385 | MS.gene28224:CDS | 45.0% | |
| GCGTTCCAATCATGTGAAAG+CGG | - | chr3.3:17729330-17729349 | None:intergenic | 45.0% | |
| GCTCGGATAATTTCCTATCC+AGG | - | chr3.3:17727980-17727999 | None:intergenic | 45.0% | |
| GGTGCAAAGCTAATTCTGAC+TGG | + | chr3.3:17726816-17726835 | MS.gene28224:intron | 45.0% | |
| GTTCCTTCCTTGCCCAAAAT+TGG | + | chr3.3:17726360-17726379 | MS.gene28224:CDS | 45.0% | |
| TAAGGGGCTGCTAAAGGAAT+CGG | - | chr3.3:17725710-17725729 | None:intergenic | 45.0% | |
| TCCTGCAAACTATGCAAAGG+TGG | - | chr3.3:17728512-17728531 | None:intergenic | 45.0% | |
| TGAACTTGAGAGGTTAGGGT+TGG | + | chr3.3:17727938-17727957 | MS.gene28224:CDS | 45.0% | |
| TGCAGTTGCACTCTCTGTTA+AGG | - | chr3.3:17728224-17728243 | None:intergenic | 45.0% | |
| TGGTCCCTAAATGTTTGAGG+CGG | - | chr3.3:17727460-17727479 | None:intergenic | 45.0% | |
| TGTCCGAAAGAGTTGTGGAT+AGG | - | chr3.3:17726057-17726076 | None:intergenic | 45.0% | |
| ! | AACAGAGAGTGCAACTGCAA+AGG | + | chr3.3:17728225-17728244 | MS.gene28224:intron | 45.0% |
| ! | ACTGCATAGTTTGCAGGAAG+AGG | - | chr3.3:17728967-17728986 | None:intergenic | 45.0% |
| ! | ATAGTTTGCAGGAAGAGGTG+TGG | + | chr3.3:17728519-17728538 | MS.gene28224:intron | 45.0% |
| ! | ATAGTTTGCAGGAAGAGGTG+TGG | - | chr3.3:17728538-17728519 | None:intergenic | 45.0% |
| ! | CTTTCACTCGTGTTTCGAGT+TGG | - | chr3.3:17729035-17729054 | None:intergenic | 45.0% |
| ! | CTTTTCCCTTTTCACGTCTC+CGG | - | chr3.3:17725750-17725769 | None:intergenic | 45.0% |
| ! | GATCCAATTTTGGGCAAGGA+AGG | - | chr3.3:17726366-17726385 | None:intergenic | 45.0% |
| ! | GGTGAAACTGCATAGTTTGC+AGG | - | chr3.3:17728973-17728992 | None:intergenic | 45.0% |
| ! | TAGGGGGAGAAGATTCCTTT+TGG | - | chr3.3:17729128-17729147 | None:intergenic | 45.0% |
| ! | TTTTCCCTTTTCACGTCTCC+GGG | - | chr3.3:17725749-17725768 | None:intergenic | 45.0% |
| !! | AAGTTGATGGACGAAGTCGA+AGG | + | chr3.3:17726418-17726437 | MS.gene28224:CDS | 45.0% |
| !! | CAGTGCATTGACTGGAAGTA+AGG | + | chr3.3:17726284-17726303 | MS.gene28224:CDS | 45.0% |
| !! | CTACCTGCATTTCTAGTAGC+AGG | + | chr3.3:17726774-17726793 | MS.gene28224:intron | 45.0% |
| !!! | GGATTTTTAGGTCTCCGCAA+CGG | - | chr3.3:17726604-17726623 | None:intergenic | 45.0% |
| AAGGAATCTTCTCCCCCTAG+AGG | + | chr3.3:17729129-17729148 | MS.gene28224:CDS | 50.0% | |
| AGCTTTGCACCTGCTATTGC+AGG | - | chr3.3:17726807-17726826 | None:intergenic | 50.0% | |
| AGGTGAGTTTCGAGCTGACA+CGG | + | chr3.3:17728912-17728931 | MS.gene28224:CDS | 50.0% | |
| CACCCTGCTACTAGAAATGC+AGG | - | chr3.3:17726780-17726799 | None:intergenic | 50.0% | |
| CCAAGACTGAAGAGAAACGC+CGG | - | chr3.3:17727591-17727610 | None:intergenic | 50.0% | |
| CGGCGTTTCTCTTCAGTCTT+GGG | + | chr3.3:17727589-17727608 | MS.gene28224:CDS | 50.0% | |
| GCTGGAAAATGAGGCTAACG+TGG | + | chr3.3:17726570-17726589 | MS.gene28224:intron | 50.0% | |
| GGAGACGTGGCTTCTTATAC+AGG | + | chr3.3:17725841-17725860 | MS.gene28224:CDS | 50.0% | |
| GGTTGTTTGCGGGAGGTTAA+GGG | - | chr3.3:17725727-17725746 | None:intergenic | 50.0% | |
| GTTGTTTGCGGGAGGTTAAG+GGG | - | chr3.3:17725726-17725745 | None:intergenic | 50.0% | |
| TGAATGCGTCAAGCCTGGAT+AGG | + | chr3.3:17727964-17727983 | MS.gene28224:CDS | 50.0% | |
| ! | AGGAAGAGGTGTGGTGACAT+TGG | - | chr3.3:17728953-17728972 | None:intergenic | 50.0% |
| ! | GACTATCAAGAGCACATGCG+AGG | - | chr3.3:17727298-17727317 | None:intergenic | 50.0% |
| ! | GCCACCTTTGCATAGTTTGC+AGG | + | chr3.3:17728508-17728527 | MS.gene28224:intron | 50.0% |
| ! | GTGATAATGAGGAGGTGGAG+AGG | + | chr3.3:17729436-17729455 | MS.gene28224:CDS | 50.0% |
| ! | TTTCCCTTTTCACGTCTCCG+GGG | - | chr3.3:17725748-17725767 | None:intergenic | 50.0% |
| !! | CTGCATTTCTAGTAGCAGGG+TGG | + | chr3.3:17726778-17726797 | MS.gene28224:intron | 50.0% |
| !!! | TGGCTTGCAGCTGCTTTTAC+TGG | + | chr3.3:17725592-17725611 | MS.gene28224:CDS | 50.0% |
| ACAACCCCGGAGACGTGAAA+AGG | + | chr3.3:17725741-17725760 | MS.gene28224:CDS | 55.0% | |
| CAACCCCGGAGACGTGAAAA+GGG | + | chr3.3:17725742-17725761 | MS.gene28224:CDS | 55.0% | |
| CCGGCGTTTCTCTTCAGTCT+TGG | + | chr3.3:17727588-17727607 | MS.gene28224:CDS | 55.0% | |
| GGACATGAATGCGTCAAGCC+TGG | + | chr3.3:17727959-17727978 | MS.gene28224:CDS | 55.0% | |
| GGAGGTTAAGGGGCTGCTAA+AGG | - | chr3.3:17725716-17725735 | None:intergenic | 55.0% | |
| GGGTTGTTTGCGGGAGGTTA+AGG | - | chr3.3:17725728-17725747 | None:intergenic | 55.0% | |
| GTTCTCAGACGCGAGTTCCT+TGG | + | chr3.3:17725804-17725823 | MS.gene28224:CDS | 55.0% | |
| TAACCTCCCGCAAACAACCC+CGG | + | chr3.3:17725728-17725747 | MS.gene28224:CDS | 55.0% | |
| TCAGACGCGAGTTCCTTGGA+TGG | + | chr3.3:17725808-17725827 | MS.gene28224:CDS | 55.0% | |
| TCCTGTCGAAGGACCATCCA+AGG | - | chr3.3:17725824-17725843 | None:intergenic | 55.0% | |
| TCCTTGGATGGTCCTTCGAC+AGG | + | chr3.3:17725820-17725839 | MS.gene28224:CDS | 55.0% | |
| TGCAACTGCGATTGCCGTTG+CGG | + | chr3.3:17726631-17726650 | MS.gene28224:intron | 55.0% | |
| TTTCGAGCTGACACGGCTAG+TGG | + | chr3.3:17728919-17728938 | MS.gene28224:CDS | 55.0% | |
| ! | AGGAAGAGGTGTGGTACTCG+CGG | + | chr3.3:17728528-17728547 | MS.gene28224:intron | 55.0% |
| !!! | GCAGCTGCTTTTACTGGAGC+TGG | + | chr3.3:17725598-17725617 | MS.gene28224:CDS | 55.0% |
| ACGTCTCCGGGGTTGTTTGC+GGG | - | chr3.3:17725737-17725756 | None:intergenic | 60.0% | |
| ACGTGGTTGCGATGCCGTTG+CGG | + | chr3.3:17726587-17726606 | MS.gene28224:intron | 60.0% | |
| CACGTCTCCGGGGTTGTTTG+CGG | - | chr3.3:17725738-17725757 | None:intergenic | 60.0% | |
| GAAGCCACGTCTCCTGTCGA+AGG | - | chr3.3:17725835-17725854 | None:intergenic | 60.0% | |
| GGGTGGTGACCTGCAATAGC+AGG | + | chr3.3:17726795-17726814 | MS.gene28224:intron | 60.0% | |
| TGGTCCTTCGACAGGAGACG+TGG | + | chr3.3:17725828-17725847 | MS.gene28224:CDS | 60.0% | |
| ! | GGAAGAGGTGTGGTACTCGC+GGG | + | chr3.3:17728529-17728548 | MS.gene28224:intron | 60.0% |
| TCTCCGGGGTTGTTTGCGGG+AGG | - | chr3.3:17725734-17725753 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 17725583 | 17729563 | 17725583 | ID=MS.gene28224 |
| chr3.3 | mRNA | 17725583 | 17729563 | 17725583 | ID=MS.gene28224.t1;Parent=MS.gene28224 |
| chr3.3 | exon | 17725583 | 17726486 | 17725583 | ID=MS.gene28224.t1.exon1;Parent=MS.gene28224.t1 |
| chr3.3 | CDS | 17725583 | 17726486 | 17725583 | ID=cds.MS.gene28224.t1;Parent=MS.gene28224.t1 |
| chr3.3 | exon | 17727586 | 17728007 | 17727586 | ID=MS.gene28224.t1.exon2;Parent=MS.gene28224.t1 |
| chr3.3 | CDS | 17727586 | 17728007 | 17727586 | ID=cds.MS.gene28224.t1;Parent=MS.gene28224.t1 |
| chr3.3 | exon | 17728880 | 17729563 | 17728880 | ID=MS.gene28224.t1.exon3;Parent=MS.gene28224.t1 |
| chr3.3 | CDS | 17728880 | 17729563 | 17728880 | ID=cds.MS.gene28224.t1;Parent=MS.gene28224.t1 |
| Gene Sequence |
| Protein sequence |
