Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28623.t1 | XP_003626086.1 | 98.3 | 232 | 3 | 1 | 1 | 231 | 58 | 289 | 1.30E-113 | 419.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28623.t1 | G7KVG1 | 98.3 | 232 | 3 | 1 | 1 | 231 | 58 | 289 | 9.7e-114 | 419.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene28623 | 0.801806 | 7.57E-49 | -1.69E-46 |
| MS.gene04915 | MS.gene28623 | 0.801586 | 8.40E-49 | -1.69E-46 |
| MS.gene04917 | MS.gene28623 | 0.805103 | 1.57E-49 | -1.69E-46 |
| MS.gene050361 | MS.gene28623 | 0.801589 | 8.39E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene28623 | 0.855096 | 7.93E-62 | -1.69E-46 |
| MS.gene050763 | MS.gene28623 | 0.855052 | 8.17E-62 | -1.69E-46 |
| MS.gene050826 | MS.gene28623 | 0.973771 | 5.36E-137 | -1.69E-46 |
| MS.gene050941 | MS.gene28623 | 0.833828 | 4.26E-56 | -1.69E-46 |
| MS.gene051856 | MS.gene28623 | 0.819688 | 1.02E-52 | -1.69E-46 |
| MS.gene051924 | MS.gene28623 | -0.800531 | 1.38E-48 | -1.69E-46 |
| MS.gene052674 | MS.gene28623 | 0.828482 | 8.77E-55 | -1.69E-46 |
| MS.gene052675 | MS.gene28623 | 0.827167 | 1.82E-54 | -1.69E-46 |
| MS.gene052677 | MS.gene28623 | 0.827131 | 1.85E-54 | -1.69E-46 |
| MS.gene054379 | MS.gene28623 | 0.872817 | 2.38E-67 | -1.69E-46 |
| MS.gene054472 | MS.gene28623 | 0.804408 | 2.19E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene28623 | 0.808394 | 3.16E-50 | -1.69E-46 |
| MS.gene055926 | MS.gene28623 | 0.848726 | 5.10E-60 | -1.69E-46 |
| MS.gene056480 | MS.gene28623 | 0.820943 | 5.25E-53 | -1.69E-46 |
| MS.gene059161 | MS.gene28623 | 0.810372 | 1.19E-50 | -1.69E-46 |
| MS.gene059283 | MS.gene28623 | 0.823836 | 1.12E-53 | -1.69E-46 |
| MS.gene059713 | MS.gene28623 | 0.807925 | 3.98E-50 | -1.69E-46 |
| MS.gene059952 | MS.gene28623 | 0.816397 | 5.65E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene28623 | 0.829098 | 6.22E-55 | -1.69E-46 |
| MS.gene06052 | MS.gene28623 | 0.815547 | 8.74E-52 | -1.69E-46 |
| MS.gene060802 | MS.gene28623 | 0.845449 | 4.03E-59 | -1.69E-46 |
| MS.gene060803 | MS.gene28623 | 0.804459 | 2.14E-49 | -1.69E-46 |
| MS.gene060851 | MS.gene28623 | 0.801461 | 8.91E-49 | -1.69E-46 |
| MS.gene060852 | MS.gene28623 | 0.803023 | 4.25E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene28623 | 0.817577 | 3.07E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene28623 | 0.807983 | 3.87E-50 | -1.69E-46 |
| MS.gene06121 | MS.gene28623 | 0.801885 | 7.29E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28623.t1 | MTR_7g110880 | 98.276 | 232 | 3 | 1 | 1 | 231 | 58 | 289 | 2.27e-167 | 463 |
| MS.gene28623.t1 | MTR_1g116590 | 47.887 | 71 | 35 | 2 | 156 | 224 | 41 | 111 | 1.12e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28623.t1 | AT4G01670 | 47.414 | 232 | 82 | 7 | 16 | 229 | 34 | 243 | 5.60e-41 | 140 |
| MS.gene28623.t1 | AT2G46940 | 43.860 | 228 | 91 | 7 | 3 | 228 | 60 | 252 | 1.79e-40 | 139 |
| MS.gene28623.t1 | AT3G62070 | 45.992 | 237 | 77 | 11 | 2 | 231 | 36 | 228 | 4.13e-40 | 137 |
| MS.gene28623.t1 | AT2G31560 | 41.489 | 94 | 28 | 2 | 156 | 222 | 102 | 195 | 8.76e-14 | 68.2 |
| MS.gene28623.t1 | AT2G31560 | 41.489 | 94 | 28 | 2 | 156 | 222 | 102 | 195 | 8.76e-14 | 68.2 |
| MS.gene28623.t1 | AT2G31560 | 41.489 | 94 | 28 | 2 | 156 | 222 | 102 | 195 | 8.76e-14 | 68.2 |
| MS.gene28623.t1 | AT2G43340 | 41.489 | 94 | 28 | 2 | 156 | 222 | 89 | 182 | 5.64e-13 | 65.5 |
| MS.gene28623.t1 | AT1G05870 | 41.237 | 97 | 29 | 3 | 156 | 224 | 88 | 184 | 1.03e-12 | 65.1 |
| MS.gene28623.t1 | AT1G05870 | 41.237 | 97 | 29 | 3 | 156 | 224 | 88 | 184 | 1.03e-12 | 65.1 |
| MS.gene28623.t1 | AT1G05870 | 41.237 | 97 | 29 | 3 | 156 | 224 | 88 | 184 | 1.03e-12 | 65.1 |
| MS.gene28623.t1 | AT1G05870 | 41.237 | 97 | 29 | 3 | 156 | 224 | 88 | 184 | 1.03e-12 | 65.1 |
| MS.gene28623.t1 | AT1G05870 | 41.237 | 97 | 29 | 3 | 156 | 224 | 88 | 184 | 1.03e-12 | 65.1 |
| MS.gene28623.t1 | AT1G05870 | 41.237 | 97 | 29 | 3 | 156 | 224 | 88 | 184 | 1.03e-12 | 65.1 |
| MS.gene28623.t1 | AT1G05870 | 41.237 | 97 | 29 | 3 | 156 | 224 | 88 | 184 | 1.03e-12 | 65.1 |
| MS.gene28623.t1 | AT1G05870 | 41.237 | 97 | 29 | 3 | 156 | 224 | 88 | 184 | 1.03e-12 | 65.1 |
| MS.gene28623.t1 | AT1G05870 | 41.237 | 97 | 29 | 3 | 156 | 224 | 88 | 184 | 1.03e-12 | 65.1 |
| MS.gene28623.t1 | AT1G05870 | 41.237 | 97 | 29 | 3 | 156 | 224 | 88 | 184 | 1.03e-12 | 65.1 |
| MS.gene28623.t1 | AT1G05870 | 41.237 | 97 | 29 | 3 | 156 | 224 | 88 | 184 | 1.03e-12 | 65.1 |
| MS.gene28623.t1 | AT1G05870 | 41.237 | 97 | 29 | 3 | 156 | 224 | 88 | 184 | 1.03e-12 | 65.1 |
Find 65 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATAGTTGGGAGAATTTA+TGG | 0.098125 | 7.2:-4667383 | MS.gene28623:CDS |
| CTCCGTCTTGGTGGCGTTGC+CGG | 0.229266 | 7.2:+4667543 | None:intergenic |
| TAGGAGTTTGTGTATGGATT+TGG | 0.274372 | 7.2:-4667247 | MS.gene28623:CDS |
| GTAATTCACCTATTGCTAAT+TGG | 0.279198 | 7.2:-4667125 | MS.gene28623:CDS |
| TTACAACCAGGGTTGTCTTC+TGG | 0.287780 | 7.2:-4667600 | MS.gene28623:CDS |
| GTTAAAGCTTGTAGAGATCT+TGG | 0.319724 | 7.2:-4667219 | MS.gene28623:CDS |
| AGGTAGTTGTTATTCGTTAC+CGG | 0.352866 | 7.2:-4667562 | MS.gene28623:CDS |
| AGTCGTGCCTTCACATCTCT+TGG | 0.356137 | 7.2:+4666864 | None:intergenic |
| AAATAGTTGGGAGAATTTAT+GGG | 0.384282 | 7.2:-4667382 | MS.gene28623:CDS |
| AGGAAAGTGGTTTGGGAGGT+AGG | 0.387981 | 7.2:-4667449 | MS.gene28623:CDS |
| ATCAGCTTCAAAACTTTCAA+TGG | 0.388916 | 7.2:+4667677 | None:intergenic |
| TGGGAATAGGAGTTTGTGTA+TGG | 0.391612 | 7.2:-4667253 | MS.gene28623:CDS |
| CTGGGGTGATGGTGATTACT+AGG | 0.398778 | 7.2:-4667284 | MS.gene28623:CDS |
| AGAAACAAAGGAAAGTGGTT+TGG | 0.402405 | 7.2:-4667457 | MS.gene28623:CDS |
| TTGGTTCCGGTGAGTGTTGT+TGG | 0.406202 | 7.2:-4667516 | MS.gene28623:CDS |
| GAAACAAAGGAAAGTGGTTT+GGG | 0.410000 | 7.2:-4667456 | MS.gene28623:CDS |
| TGGGTGTCATGAGCCGTATT+TGG | 0.411466 | 7.2:+4666803 | None:intergenic |
| GCCACCAAGACGGAGGAGTT+TGG | 0.412050 | 7.2:-4667535 | MS.gene28623:CDS |
| GTTTGGGAGGTAGGAGAAGA+AGG | 0.412318 | 7.2:-4667440 | MS.gene28623:CDS |
| AAACTCCTATTCCCACCTTT+AGG | 0.424753 | 7.2:+4667261 | None:intergenic |
| GGAGAGAGTGATCAGAGTAC+TGG | 0.429926 | 7.2:-4667303 | MS.gene28623:CDS |
| TCTGGCTCTGAAAATGAATC+AGG | 0.430829 | 7.2:-4667582 | MS.gene28623:CDS |
| ATAGCATCTGCCACCAAATA+CGG | 0.446123 | 7.2:-4666816 | MS.gene28623:CDS |
| CTAGGCCTAAAGGTGGGAAT+AGG | 0.446339 | 7.2:-4667266 | MS.gene28623:CDS |
| GAATGAGAAGTGTGTTTGAA+AGG | 0.457694 | 7.2:-4667407 | MS.gene28623:CDS |
| GTAGGAGAAGAAGGAGGAGA+AGG | 0.459589 | 7.2:-4667431 | MS.gene28623:CDS |
| TAGAGATCTTGGATTTGAGT+TGG | 0.463756 | 7.2:-4667208 | MS.gene28623:CDS |
| GAGATTCGCCAATTAGCAAT+AGG | 0.470838 | 7.2:+4667117 | None:intergenic |
| GTTTGAAAGGGGAAATAGTT+GGG | 0.473057 | 7.2:-4667394 | MS.gene28623:CDS |
| TTAGAGAATGGTGTGAATAG+TGG | 0.473221 | 7.2:-4667324 | MS.gene28623:CDS |
| GAGAAAGAGAAATTAGAGAA+TGG | 0.488744 | 7.2:-4667336 | MS.gene28623:CDS |
| AATGAGAAGTGTGTTTGAAA+GGG | 0.496838 | 7.2:-4667406 | MS.gene28623:CDS |
| ACCAAACTCCTCCGTCTTGG+TGG | 0.498106 | 7.2:+4667534 | None:intergenic |
| AAGACGGAGGAGTTTGGTTC+CGG | 0.500715 | 7.2:-4667529 | MS.gene28623:CDS |
| GAGAGAGTGATCAGAGTACT+GGG | 0.504015 | 7.2:-4667302 | MS.gene28623:CDS |
| TGTTTGAAAGGGGAAATAGT+TGG | 0.505309 | 7.2:-4667395 | MS.gene28623:CDS |
| ATTGCTAATTGGCGAATCTC+CGG | 0.508950 | 7.2:-4667114 | MS.gene28623:CDS |
| TTCACTCCAACAACACTCAC+CGG | 0.546445 | 7.2:+4667510 | None:intergenic |
| AATTGGCGAATCTCCGGTCC+CGG | 0.547996 | 7.2:-4667108 | MS.gene28623:intron |
| GGAACCAAACTCCTCCGTCT+TGG | 0.552249 | 7.2:+4667531 | None:intergenic |
| AGAAAAGAAACAAAGGAAAG+TGG | 0.562594 | 7.2:-4667462 | MS.gene28623:CDS |
| ATGGTGATTACTAGGCCTAA+AGG | 0.564020 | 7.2:-4667276 | MS.gene28623:CDS |
| AAATTGAGAATTACCGGGAC+CGG | 0.564355 | 7.2:+4667095 | None:intergenic |
| ATGAGAAGTGTGTTTGAAAG+GGG | 0.566156 | 7.2:-4667405 | MS.gene28623:CDS |
| TGAAGCAAGAAAAGAAACAA+AGG | 0.581851 | 7.2:-4667469 | MS.gene28623:CDS |
| ACGACTCAAAGTGTGGGCAC+AGG | 0.585079 | 7.2:-4666847 | MS.gene28623:CDS |
| ACAAAGGAAAGTGGTTTGGG+AGG | 0.586780 | 7.2:-4667453 | MS.gene28623:CDS |
| TGATGATCCAAGAGATGTGA+AGG | 0.588464 | 7.2:-4666871 | MS.gene28623:CDS |
| TGGGAGGTAGGAGAAGAAGG+AGG | 0.588937 | 7.2:-4667437 | MS.gene28623:CDS |
| TGAAGGCACGACTCAAAGTG+TGG | 0.596523 | 7.2:-4666854 | MS.gene28623:CDS |
| TGATCAGAGTACTGGGGTGA+TGG | 0.602328 | 7.2:-4667295 | MS.gene28623:CDS |
| GATGATCAGTTATTACAACC+AGG | 0.603207 | 7.2:-4667612 | MS.gene28623:CDS |
| GTGTCATGAGCCGTATTTGG+TGG | 0.611631 | 7.2:+4666806 | None:intergenic |
| TACCGGCAACGCCACCAAGA+CGG | 0.614089 | 7.2:-4667545 | MS.gene28623:CDS |
| GTGATTACTAGGCCTAAAGG+TGG | 0.635360 | 7.2:-4667273 | MS.gene28623:CDS |
| TCAGAGCCAGAAGACAACCC+TGG | 0.636829 | 7.2:+4667594 | None:intergenic |
| ATGATCAGTTATTACAACCA+GGG | 0.642055 | 7.2:-4667611 | MS.gene28623:CDS |
| ACACTTGATACTAGTAGTGG+TGG | 0.643694 | 7.2:-4667147 | MS.gene28623:CDS |
| TCAACACTTGATACTAGTAG+TGG | 0.666554 | 7.2:-4667150 | MS.gene28623:CDS |
| GAAGGCACGACTCAAAGTGT+GGG | 0.668787 | 7.2:-4666853 | MS.gene28623:CDS |
| TGATTACTAGGCCTAAAGGT+GGG | 0.670590 | 7.2:-4667272 | MS.gene28623:CDS |
| GGACAAGTTTGACATACACA+TGG | 0.672211 | 7.2:+4667698 | None:intergenic |
| CGGCAACGCCACCAAGACGG+AGG | 0.684248 | 7.2:-4667542 | MS.gene28623:CDS |
| GATGGTGGTGATGAAGCAGA+TGG | 0.717318 | 7.2:-4667657 | MS.gene28623:CDS |
| AGAGAGTGATCAGAGTACTG+GGG | 0.764816 | 7.2:-4667301 | MS.gene28623:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTGTATTATATTATGT+AGG | - | chr7.2:4667611-4667630 | MS.gene28623:CDS | 10.0% |
| !! | ATAAACATTATAAGATTGTT+TGG | - | chr7.2:4667480-4667499 | MS.gene28623:CDS | 15.0% |
| !! | AAAACAATTTATGACATGTT+CGG | - | chr7.2:4667514-4667533 | MS.gene28623:CDS | 20.0% |
| !!! | TCAAATTTTGAATTAATCGA+AGG | + | chr7.2:4667590-4667609 | None:intergenic | 20.0% |
| ! | AAATAGTTGGGAGAATTTAT+GGG | - | chr7.2:4667123-4667142 | MS.gene28623:CDS | 25.0% |
| AACCAAAATTGAGAATTACC+GGG | + | chr7.2:4667418-4667437 | None:intergenic | 30.0% | |
| AGAAAAGAAACAAAGGAAAG+TGG | - | chr7.2:4667043-4667062 | MS.gene28623:intron | 30.0% | |
| ATCAGCTTCAAAACTTTCAA+TGG | + | chr7.2:4666831-4666850 | None:intergenic | 30.0% | |
| ATGATCAGTTATTACAACCA+GGG | - | chr7.2:4666894-4666913 | MS.gene28623:intron | 30.0% | |
| GAAATAGTTGGGAGAATTTA+TGG | - | chr7.2:4667122-4667141 | MS.gene28623:CDS | 30.0% | |
| GAACCAAAATTGAGAATTAC+CGG | + | chr7.2:4667419-4667438 | None:intergenic | 30.0% | |
| GAGAAAGAGAAATTAGAGAA+TGG | - | chr7.2:4667169-4667188 | MS.gene28623:CDS | 30.0% | |
| GTAATTCACCTATTGCTAAT+TGG | - | chr7.2:4667380-4667399 | MS.gene28623:CDS | 30.0% | |
| TAAGCGCGTATCATATATTA+TGG | + | chr7.2:4667558-4667577 | None:intergenic | 30.0% | |
| TGAAGCAAGAAAAGAAACAA+AGG | - | chr7.2:4667036-4667055 | MS.gene28623:intron | 30.0% | |
| ! | AATGAGAAGTGTGTTTGAAA+GGG | - | chr7.2:4667099-4667118 | MS.gene28623:intron | 30.0% |
| ! | CTCAAATAAGTTGACCTAAT+CGG | + | chr7.2:4667448-4667467 | None:intergenic | 30.0% |
| ! | TTTGGTTCATATTTCCGATT+AGG | - | chr7.2:4667431-4667450 | MS.gene28623:CDS | 30.0% |
| !!! | ATTGAAAGTTTTGAAGCTGA+TGG | - | chr7.2:4666830-4666849 | MS.gene28623:CDS | 30.0% |
| AGAAACAAAGGAAAGTGGTT+TGG | - | chr7.2:4667048-4667067 | MS.gene28623:intron | 35.0% | |
| GAAACAAAGGAAAGTGGTTT+GGG | - | chr7.2:4667049-4667068 | MS.gene28623:intron | 35.0% | |
| GATGATCAGTTATTACAACC+AGG | - | chr7.2:4666893-4666912 | MS.gene28623:intron | 35.0% | |
| GTTAAAGCTTGTAGAGATCT+TGG | - | chr7.2:4667286-4667305 | MS.gene28623:CDS | 35.0% | |
| GTTTGAAAGGGGAAATAGTT+GGG | - | chr7.2:4667111-4667130 | MS.gene28623:CDS | 35.0% | |
| TAGAGATCTTGGATTTGAGT+TGG | - | chr7.2:4667297-4667316 | MS.gene28623:CDS | 35.0% | |
| TAGGAGTTTGTGTATGGATT+TGG | - | chr7.2:4667258-4667277 | MS.gene28623:CDS | 35.0% | |
| TCAACACTTGATACTAGTAG+TGG | - | chr7.2:4667355-4667374 | MS.gene28623:CDS | 35.0% | |
| TGTTTGAAAGGGGAAATAGT+TGG | - | chr7.2:4667110-4667129 | MS.gene28623:CDS | 35.0% | |
| TTAGAGAATGGTGTGAATAG+TGG | - | chr7.2:4667181-4667200 | MS.gene28623:CDS | 35.0% | |
| ! | AGGTAGTTGTTATTCGTTAC+CGG | - | chr7.2:4666943-4666962 | MS.gene28623:intron | 35.0% |
| ! | ATGAGAAGTGTGTTTGAAAG+GGG | - | chr7.2:4667100-4667119 | MS.gene28623:intron | 35.0% |
| ! | GAATGAGAAGTGTGTTTGAA+AGG | - | chr7.2:4667098-4667117 | MS.gene28623:intron | 35.0% |
| AAACTCCTATTCCCACCTTT+AGG | + | chr7.2:4667247-4667266 | None:intergenic | 40.0% | |
| AAATTGAGAATTACCGGGAC+CGG | + | chr7.2:4667413-4667432 | None:intergenic | 40.0% | |
| ACACTTGATACTAGTAGTGG+TGG | - | chr7.2:4667358-4667377 | MS.gene28623:CDS | 40.0% | |
| ATAGCATCTGCCACCAAATA+CGG | - | chr7.2:4667689-4667708 | MS.gene28623:CDS | 40.0% | |
| ATGGTGATTACTAGGCCTAA+AGG | - | chr7.2:4667229-4667248 | MS.gene28623:CDS | 40.0% | |
| ATTGCTAATTGGCGAATCTC+CGG | - | chr7.2:4667391-4667410 | MS.gene28623:CDS | 40.0% | |
| GAGATTCGCCAATTAGCAAT+AGG | + | chr7.2:4667391-4667410 | None:intergenic | 40.0% | |
| TGATGATCCAAGAGATGTGA+AGG | - | chr7.2:4667634-4667653 | MS.gene28623:CDS | 40.0% | |
| TGATTACTAGGCCTAAAGGT+GGG | - | chr7.2:4667233-4667252 | MS.gene28623:CDS | 40.0% | |
| TGGGAATAGGAGTTTGTGTA+TGG | - | chr7.2:4667252-4667271 | MS.gene28623:CDS | 40.0% | |
| ! | GATGGTGAATTTTCTGCTGA+TGG | - | chr7.2:4666866-4666885 | MS.gene28623:CDS | 40.0% |
| ! | GTCCCGGTAATTCTCAATTT+TGG | - | chr7.2:4667413-4667432 | MS.gene28623:CDS | 40.0% |
| !! | TCTGGCTCTGAAAATGAATC+AGG | - | chr7.2:4666923-4666942 | MS.gene28623:intron | 40.0% |
| !!! | GAAAGTTTTGAAGCTGATGG+TGG | - | chr7.2:4666833-4666852 | MS.gene28623:CDS | 40.0% |
| GTGATTACTAGGCCTAAAGG+TGG | - | chr7.2:4667232-4667251 | MS.gene28623:CDS | 45.0% | |
| TTACAACCAGGGTTGTCTTC+TGG | - | chr7.2:4666905-4666924 | MS.gene28623:intron | 45.0% | |
| TTCACTCCAACAACACTCAC+CGG | + | chr7.2:4666998-4667017 | None:intergenic | 45.0% | |
| ! | ACAAAGGAAAGTGGTTTGGG+AGG | - | chr7.2:4667052-4667071 | MS.gene28623:intron | 45.0% |
| ! | GAGAGAGTGATCAGAGTACT+GGG | - | chr7.2:4667203-4667222 | MS.gene28623:CDS | 45.0% |
| !! | AGAGAGTGATCAGAGTACTG+GGG | - | chr7.2:4667204-4667223 | MS.gene28623:CDS | 45.0% |
| AGTCGTGCCTTCACATCTCT+TGG | + | chr7.2:4667644-4667663 | None:intergenic | 50.0% | |
| CTAGGCCTAAAGGTGGGAAT+AGG | - | chr7.2:4667239-4667258 | MS.gene28623:CDS | 50.0% | |
| GGAGAGAGTGATCAGAGTAC+TGG | - | chr7.2:4667202-4667221 | MS.gene28623:CDS | 50.0% | |
| GTAGGAGAAGAAGGAGGAGA+AGG | - | chr7.2:4667074-4667093 | MS.gene28623:intron | 50.0% | |
| GTTTGGGAGGTAGGAGAAGA+AGG | - | chr7.2:4667065-4667084 | MS.gene28623:intron | 50.0% | |
| ! | AAGACGGAGGAGTTTGGTTC+CGG | - | chr7.2:4666976-4666995 | MS.gene28623:intron | 50.0% |
| ! | AGGAAAGTGGTTTGGGAGGT+AGG | - | chr7.2:4667056-4667075 | MS.gene28623:intron | 50.0% |
| ! | CTGGGGTGATGGTGATTACT+AGG | - | chr7.2:4667221-4667240 | MS.gene28623:CDS | 50.0% |
| ! | GAAGGCACGACTCAAAGTGT+GGG | - | chr7.2:4667652-4667671 | MS.gene28623:CDS | 50.0% |
| ! | GATGGTGGTGATGAAGCAGA+TGG | - | chr7.2:4666848-4666867 | MS.gene28623:CDS | 50.0% |
| ! | TGAAGGCACGACTCAAAGTG+TGG | - | chr7.2:4667651-4667670 | MS.gene28623:CDS | 50.0% |
| ! | TTGGTTCCGGTGAGTGTTGT+TGG | - | chr7.2:4666989-4667008 | MS.gene28623:intron | 50.0% |
| !! | TGATCAGAGTACTGGGGTGA+TGG | - | chr7.2:4667210-4667229 | MS.gene28623:CDS | 50.0% |
| AATTGGCGAATCTCCGGTCC+CGG | - | chr7.2:4667397-4667416 | MS.gene28623:CDS | 55.0% | |
| ACCAAACTCCTCCGTCTTGG+TGG | + | chr7.2:4666974-4666993 | None:intergenic | 55.0% | |
| ACGACTCAAAGTGTGGGCAC+AGG | - | chr7.2:4667658-4667677 | MS.gene28623:CDS | 55.0% | |
| GGAACCAAACTCCTCCGTCT+TGG | + | chr7.2:4666977-4666996 | None:intergenic | 55.0% | |
| TCAGAGCCAGAAGACAACCC+TGG | + | chr7.2:4666914-4666933 | None:intergenic | 55.0% | |
| TGGGAGGTAGGAGAAGAAGG+AGG | - | chr7.2:4667068-4667087 | MS.gene28623:intron | 55.0% | |
| GCCACCAAGACGGAGGAGTT+TGG | - | chr7.2:4666970-4666989 | MS.gene28623:intron | 60.0% | |
| TACCGGCAACGCCACCAAGA+CGG | - | chr7.2:4666960-4666979 | MS.gene28623:intron | 60.0% | |
| !! | CTCCGTCTTGGTGGCGTTGC+CGG | + | chr7.2:4666965-4666984 | None:intergenic | 65.0% |
| CGGCAACGCCACCAAGACGG+AGG | - | chr7.2:4666963-4666982 | MS.gene28623:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 4666809 | 4667718 | 4666809 | ID=MS.gene28623 |
| chr7.2 | mRNA | 4666809 | 4667718 | 4666809 | ID=MS.gene28623.t1;Parent=MS.gene28623 |
| chr7.2 | exon | 4667109 | 4667718 | 4667109 | ID=MS.gene28623.t1.exon1;Parent=MS.gene28623.t1 |
| chr7.2 | CDS | 4667109 | 4667718 | 4667109 | ID=cds.MS.gene28623.t1;Parent=MS.gene28623.t1 |
| chr7.2 | exon | 4666809 | 4666894 | 4666809 | ID=MS.gene28623.t1.exon2;Parent=MS.gene28623.t1 |
| chr7.2 | CDS | 4666809 | 4666894 | 4666809 | ID=cds.MS.gene28623.t1;Parent=MS.gene28623.t1 |
| Gene Sequence |
| Protein sequence |
