AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29829

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29829.t1 MTR_3g074390 76.368 402 90 1 1 397 1 402 0.0 634
MS.gene29829.t1 MTR_3g074390 67.925 53 17 0 390 442 460 512 8.20e-18 85.9
MS.gene29829.t1 MTR_3g074410 64.440 509 114 6 1 442 1 509 0.0 625
MS.gene29829.t1 MTR_3g074270 62.004 479 136 5 1 434 1 478 0.0 591
MS.gene29829.t1 MTR_3g074380 78.689 366 75 2 1 363 1 366 0.0 590
MS.gene29829.t1 MTR_3g074370 92.488 213 16 0 185 397 18 230 2.65e-139 402
MS.gene29829.t1 MTR_3g074370 91.837 49 4 0 394 442 292 340 6.09e-24 102
MS.gene29829.t1 MTR_3g074340 92.488 213 16 0 185 397 18 230 3.72e-139 402
MS.gene29829.t1 MTR_3g074340 89.796 49 5 0 394 442 292 340 3.60e-24 103
MS.gene29829.t1 MTR_3g008160 52.273 396 179 7 8 397 6 397 1.27e-138 407
MS.gene29829.t1 MTR_3g074320 91.549 213 18 0 185 397 18 230 1.09e-137 399
MS.gene29829.t1 MTR_3g074400 59.207 353 110 5 50 401 1 320 2.31e-133 390
MS.gene29829.t1 MTR_5g041550 49.502 402 196 5 1 397 1 400 7.42e-133 392
MS.gene29829.t1 MTR_5g082540 49.235 392 193 4 10 397 8 397 1.10e-129 384
MS.gene29829.t1 MTR_3g008170 51.005 398 187 6 5 397 4 398 1.24e-129 384
MS.gene29829.t1 MTR_1g038630 47.619 399 205 3 1 397 1 397 1.06e-128 382
MS.gene29829.t1 MTR_3g093010 49.874 397 192 5 4 395 3 397 5.14e-127 377
MS.gene29829.t1 MTR_4g091370 52.713 387 177 5 15 397 15 399 1.32e-126 377
MS.gene29829.t1 MTR_5g006070 49.485 388 187 6 15 397 14 397 2.06e-125 374
MS.gene29829.t1 MTR_0009s0370 48.608 395 195 6 8 397 7 398 9.32e-125 372
MS.gene29829.t1 MTR_4g090600 51.244 402 186 6 7 400 3 402 5.11e-123 367
MS.gene29829.t1 MTR_0204s0020 46.753 385 200 4 12 395 10 390 4.22e-120 359
MS.gene29829.t1 MTR_3g023480 46.392 388 201 5 15 397 13 398 5.37e-119 357
MS.gene29829.t1 MTR_3g008160 51.136 352 164 6 50 397 1 348 7.46e-119 355
MS.gene29829.t1 MTR_1g104780 46.517 402 205 7 1 397 1 397 3.18e-118 355
MS.gene29829.t1 MTR_0204s0020 45.974 385 200 5 12 395 10 387 3.77e-116 349
MS.gene29829.t1 MTR_5g094760 46.907 388 197 5 1 383 1 384 1.70e-115 348
MS.gene29829.t1 MTR_7g091690 46.649 388 198 5 1 383 1 384 3.55e-115 347
MS.gene29829.t1 MTR_1g104770 44.389 401 216 5 1 397 1 398 1.02e-114 345
MS.gene29829.t1 MTR_1g104750 45.387 401 211 6 1 397 1 397 1.48e-114 345
MS.gene29829.t1 MTR_1g038600 44.584 397 202 4 1 397 1 379 3.12e-114 344
MS.gene29829.t1 MTR_0204s0040 43.147 394 219 4 3 395 9 398 8.13e-113 341
MS.gene29829.t1 MTR_4g116790 45.429 361 194 3 3 362 7 365 1.30e-112 336
MS.gene29829.t1 MTR_8g102860 47.804 387 194 8 15 397 18 400 5.57e-112 339
MS.gene29829.t1 MTR_6g087040 47.030 404 203 8 1 397 1 400 1.45e-111 338
MS.gene29829.t1 MTR_6g088375 47.030 404 203 8 1 397 1 400 1.45e-111 338
MS.gene29829.t1 MTR_4g116790 44.892 372 202 3 3 373 7 376 1.66e-111 338
MS.gene29829.t1 MTR_3g093060 48.011 352 175 5 50 395 1 350 3.49e-111 335
MS.gene29829.t1 MTR_4g116770 43.147 394 219 4 3 395 205 594 1.03e-110 342
MS.gene29829.t1 MTR_3g007910 46.582 395 176 7 4 395 3 365 1.58e-109 332
MS.gene29829.t1 MTR_5g006070 47.875 353 175 6 50 397 1 349 3.12e-107 325
MS.gene29829.t1 MTR_8g102860 47.727 352 176 8 50 397 1 348 1.31e-98 303
MS.gene29829.t1 MTR_3g074330 91.139 158 7 1 1 151 1 158 1.61e-92 277
MS.gene29829.t1 MTR_3g074360 91.139 158 7 1 1 151 1 158 1.61e-92 277
MS.gene29829.t1 MTR_3g074310 90.506 158 8 1 1 151 1 158 1.06e-91 275
MS.gene29829.t1 MTR_5g096000 50.562 178 70 1 4 181 3 162 6.10e-48 167
MS.gene29829.t1 MTR_4g072030 27.855 359 219 7 27 365 31 369 1.38e-38 146
MS.gene29829.t1 MTR_6g088450 27.806 392 249 9 28 410 63 429 1.76e-38 146
MS.gene29829.t1 MTR_2g013310 29.859 355 221 6 24 369 53 388 3.99e-38 145
MS.gene29829.t1 MTR_4g069500 28.611 360 216 7 27 365 34 373 9.35e-38 144
MS.gene29829.t1 MTR_2g013310 31.724 290 190 3 88 369 26 315 1.32e-37 142
MS.gene29829.t1 MTR_4g069500 30.508 295 183 5 92 365 30 323 2.31e-37 142
MS.gene29829.t1 MTR_8g103500 26.462 359 226 7 18 361 13 348 3.09e-37 142
MS.gene29829.t1 MTR_3g116240 27.978 361 219 9 27 365 32 373 5.90e-36 139
MS.gene29829.t1 MTR_0064s0040 48.993 149 63 2 4 151 5 141 6.36e-36 130
MS.gene29829.t1 MTR_8g077890 25.726 482 254 14 28 425 24 485 9.32e-36 138
MS.gene29829.t1 MTR_7g446340 27.778 360 232 7 20 370 51 391 1.98e-34 135
MS.gene29829.t1 MTR_6g007340 27.778 360 232 7 20 370 51 391 1.98e-34 135
MS.gene29829.t1 MTR_2g049020 31.085 341 207 8 34 364 37 359 2.63e-34 135
MS.gene29829.t1 MTR_7g082270 27.500 360 236 8 9 365 51 388 9.90e-34 132
MS.gene29829.t1 MTR_7g082270 27.500 360 236 8 9 365 51 388 1.66e-33 132
MS.gene29829.t1 MTR_2g048720 30.448 335 208 8 34 361 37 353 1.91e-33 132
MS.gene29829.t1 MTR_6g018790 27.300 337 224 5 16 352 98 413 8.51e-33 130
MS.gene29829.t1 MTR_7g094450 27.136 398 221 9 82 418 80 469 3.24e-31 125
MS.gene29829.t1 MTR_5g075300 27.411 394 236 11 28 397 24 391 1.95e-30 123
MS.gene29829.t1 MTR_8g077310 29.474 285 192 4 82 365 87 363 2.35e-30 121
MS.gene29829.t1 MTR_8g077310 29.474 285 192 4 82 365 87 363 4.26e-30 122
MS.gene29829.t1 MTR_8g077300 26.910 301 213 2 82 382 79 372 4.46e-30 122
MS.gene29829.t1 MTR_2g026160 27.647 340 222 5 34 365 38 361 1.73e-29 121
MS.gene29829.t1 MTR_8g077310 29.197 274 185 4 93 365 1 266 3.96e-29 118
MS.gene29829.t1 MTR_3g080240 27.059 340 222 8 28 364 98 414 5.40e-29 119
MS.gene29829.t1 MTR_4g077740 25.000 344 234 7 22 353 44 375 1.33e-28 118
MS.gene29829.t1 MTR_7g113960 27.407 270 188 3 82 351 67 328 2.13e-28 115
MS.gene29829.t1 MTR_7g113970 26.333 300 210 5 82 380 102 391 2.37e-28 116
MS.gene29829.t1 MTR_7g113970 26.333 300 210 5 82 380 102 391 2.76e-28 117
MS.gene29829.t1 MTR_7g094110 27.513 378 225 7 82 418 82 451 3.82e-28 116
MS.gene29829.t1 MTR_7g113960 27.407 270 188 3 82 351 67 328 4.05e-28 116
MS.gene29829.t1 MTR_2g020710 28.090 267 183 4 82 347 89 347 4.20e-28 115
MS.gene29829.t1 MTR_2g020710 28.195 266 182 4 83 347 1 258 4.32e-28 115
MS.gene29829.t1 MTR_2g020710 28.090 267 183 4 82 347 89 347 4.75e-28 114
MS.gene29829.t1 MTR_2g020710 28.090 267 183 4 82 347 89 347 4.76e-28 115
MS.gene29829.t1 MTR_2g020710 28.090 267 183 4 82 347 89 347 8.79e-28 115
MS.gene29829.t1 MTR_7g005910 27.059 340 228 6 29 365 39 361 2.46e-27 114
MS.gene29829.t1 MTR_3g084110 25.661 378 250 9 34 408 39 388 3.06e-27 114
MS.gene29829.t1 MTR_5g019870 27.063 303 199 6 75 356 49 350 3.30e-27 114
MS.gene29829.t1 MTR_1g022315 26.408 284 202 2 82 365 89 365 5.32e-27 113
MS.gene29829.t1 MTR_5g077580 26.849 365 187 9 34 349 37 370 1.22e-26 112
MS.gene29829.t1 MTR_1g022315 26.007 273 195 2 93 365 1 266 2.27e-26 110
MS.gene29829.t1 MTR_7g094110 27.758 281 194 3 82 361 82 354 3.81e-26 110
MS.gene29829.t1 MTR_1g038620 36.250 160 83 3 201 360 50 190 6.65e-26 104
MS.gene29829.t1 MTR_5g020270 27.368 285 198 4 82 365 90 366 2.21e-25 108
MS.gene29829.t1 MTR_4g118610 24.907 269 193 4 82 349 92 352 2.63e-25 107
MS.gene29829.t1 MTR_4g064820 26.389 360 238 7 22 366 95 442 3.61e-25 108
MS.gene29829.t1 MTR_4g118610 24.907 269 193 4 82 349 92 352 4.74e-25 107
MS.gene29829.t1 MTR_1g116660 24.611 386 254 9 29 408 41 395 1.30e-24 106
MS.gene29829.t1 MTR_5g020270 27.007 274 191 4 93 365 1 266 1.34e-24 105
MS.gene29829.t1 MTR_6g087910 22.868 258 194 3 92 349 102 354 3.94e-23 102
MS.gene29829.t1 MTR_2g026140 27.089 347 213 8 29 365 30 346 4.18e-23 102
MS.gene29829.t1 MTR_4g013205 23.547 327 222 5 28 351 41 342 8.66e-23 100
MS.gene29829.t1 MTR_1g116650 25.723 346 221 7 25 365 78 392 2.84e-22 99.8
MS.gene29829.t1 MTR_5g020270 26.689 296 194 7 82 364 90 375 3.58e-21 95.9
MS.gene29829.t1 MTR_3g116060 29.825 171 117 3 90 258 52 221 1.02e-17 86.3
MS.gene29829.t1 MTR_4g069500 29.891 184 107 5 202 365 3 184 8.79e-17 81.6
MS.gene29829.t1 MTR_3g118530 29.240 171 118 3 90 258 54 223 2.15e-16 82.0
MS.gene29829.t1 MTR_3g118530 29.240 171 118 3 90 258 54 223 5.01e-16 80.9
MS.gene29829.t1 MTR_5g044910 28.902 173 120 3 83 253 47 218 2.20e-15 79.0
MS.gene29829.t1 MTR_5g024740 26.271 236 152 7 21 253 2 218 7.49e-15 77.4
MS.gene29829.t1 MTR_8g073100 27.374 179 127 3 77 253 41 218 1.11e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29829.t1 AT1G34580 62.344 401 147 3 1 397 1 401 1.72e-170 488
MS.gene29829.t1 AT1G34580 60.969 351 134 2 50 397 1 351 3.70e-145 422
MS.gene29829.t1 AT1G11260 51.372 401 189 5 1 397 1 399 1.13e-138 408
MS.gene29829.t1 AT4G21480 51.880 399 188 4 1 397 1 397 8.16e-137 402
MS.gene29829.t1 AT3G19930 51.889 397 186 4 4 397 3 397 1.26e-136 402
MS.gene29829.t1 AT3G19930 51.889 397 186 4 4 397 3 397 1.26e-136 402
MS.gene29829.t1 AT5G23270 50.990 404 187 7 1 397 1 400 1.08e-131 390
MS.gene29829.t1 AT3G19940 51.436 383 178 5 19 397 21 399 5.25e-127 378
MS.gene29829.t1 AT1G50310 50.524 382 184 5 19 397 21 400 4.95e-125 373
MS.gene29829.t1 AT5G26340 47.880 401 202 5 1 397 1 398 4.40e-123 368
MS.gene29829.t1 AT4G02050 45.750 400 208 5 1 395 1 396 4.66e-118 355
MS.gene29829.t1 AT4G02050 45.750 400 208 5 1 395 1 396 4.66e-118 355
MS.gene29829.t1 AT5G61520 46.175 366 187 5 17 375 18 380 5.02e-116 350
MS.gene29829.t1 AT5G26250 45.745 376 201 3 9 383 8 381 3.81e-114 344
MS.gene29829.t1 AT3G05960 44.800 375 204 3 9 382 7 379 2.45e-109 332
MS.gene29829.t1 AT1G77210 43.392 401 217 7 1 395 1 397 1.00e-107 328
MS.gene29829.t1 AT1G77210 43.392 401 217 7 1 395 1 397 1.00e-107 328
MS.gene29829.t1 AT1G07340 43.750 400 217 5 1 397 1 395 3.49e-107 326
MS.gene29829.t1 AT5G61520 44.611 334 175 5 49 375 2 332 1.34e-100 308
MS.gene29829.t1 AT1G50310 48.193 249 125 4 151 397 11 257 3.11e-73 235
MS.gene29829.t1 AT1G77210 40.486 247 141 5 151 395 6 248 1.21e-58 196
MS.gene29829.t1 AT3G18830 28.333 360 218 7 27 365 40 380 1.82e-38 146
MS.gene29829.t1 AT2G16120 28.889 360 216 9 27 365 30 370 6.64e-38 144
MS.gene29829.t1 AT2G16130 29.565 345 205 8 27 352 30 355 2.28e-37 143
MS.gene29829.t1 AT2G18480 29.714 350 206 8 37 365 36 366 4.54e-36 139
MS.gene29829.t1 AT2G20780 27.479 353 230 7 20 365 51 384 2.23e-34 135
MS.gene29829.t1 AT5G16150 27.647 340 219 5 16 352 98 413 4.26e-34 134
MS.gene29829.t1 AT5G16150 27.647 340 219 5 16 352 98 413 4.26e-34 134
MS.gene29829.t1 AT5G16150 27.647 340 219 5 16 352 98 413 4.26e-34 134
MS.gene29829.t1 AT1G30220 31.077 325 199 7 34 351 39 345 8.14e-34 134
MS.gene29829.t1 AT2G20780 28.772 285 197 3 87 365 42 326 1.96e-33 131
MS.gene29829.t1 AT1G54730 29.003 331 192 9 29 351 38 333 2.87e-33 128
MS.gene29829.t1 AT2G48020 28.269 283 194 3 82 363 68 342 3.38e-33 129
MS.gene29829.t1 AT4G36670 27.100 369 227 8 27 373 21 369 4.51e-33 130
MS.gene29829.t1 AT1G54730 29.003 331 192 9 29 351 38 333 6.04e-33 129
MS.gene29829.t1 AT1G54730 29.003 331 192 9 29 351 38 333 6.04e-33 129
MS.gene29829.t1 AT1G54730 29.003 331 192 9 29 351 38 333 7.28e-33 129
MS.gene29829.t1 AT2G48020 28.269 283 194 3 82 363 68 342 8.01e-33 129
MS.gene29829.t1 AT2G48020 28.269 283 194 3 82 363 68 342 8.01e-33 129
MS.gene29829.t1 AT1G54730 29.003 331 192 9 29 351 38 333 1.47e-32 129
MS.gene29829.t1 AT4G16480 29.577 355 221 8 34 378 38 373 2.10e-32 129
MS.gene29829.t1 AT4G16480 29.577 355 221 8 34 378 38 373 2.10e-32 129
MS.gene29829.t1 AT4G16480 29.577 355 221 8 34 378 38 373 2.10e-32 129
MS.gene29829.t1 AT1G75220 26.316 361 240 4 20 380 45 379 3.47e-32 128
MS.gene29829.t1 AT1G54730 29.412 306 176 7 29 326 38 311 7.08e-32 124
MS.gene29829.t1 AT1G54730 29.412 306 176 7 29 326 38 311 7.08e-32 124
MS.gene29829.t1 AT2G48020 27.778 270 187 2 82 351 68 329 8.29e-32 124
MS.gene29829.t1 AT3G05160 27.273 352 227 5 16 365 14 338 1.69e-31 125
MS.gene29829.t1 AT1G54730 29.412 306 176 7 29 326 38 311 1.99e-31 124
MS.gene29829.t1 AT1G54730 29.412 306 176 8 29 326 38 311 2.01e-31 125
MS.gene29829.t1 AT1G08930 27.143 350 217 8 8 351 42 359 2.37e-31 125
MS.gene29829.t1 AT1G08930 27.143 350 217 8 8 351 42 359 2.37e-31 125
MS.gene29829.t1 AT3G05165 27.557 352 226 5 16 365 23 347 2.81e-31 125
MS.gene29829.t1 AT3G05165 27.557 352 226 5 16 365 23 347 2.81e-31 125
MS.gene29829.t1 AT3G05165 27.557 352 226 5 16 365 23 347 3.62e-31 125
MS.gene29829.t1 AT3G05165 27.557 352 226 5 16 365 23 347 3.62e-31 125
MS.gene29829.t1 AT3G05165 27.557 352 226 5 16 365 23 347 3.62e-31 125
MS.gene29829.t1 AT1G54730 29.412 306 176 8 29 326 38 311 3.69e-31 124
MS.gene29829.t1 AT3G05165 27.557 352 226 5 16 365 23 347 3.96e-31 125
MS.gene29829.t1 AT3G05400 28.239 301 199 5 82 381 66 350 4.03e-31 124
MS.gene29829.t1 AT3G05160 28.873 284 192 3 84 365 14 289 4.99e-30 120
MS.gene29829.t1 AT3G05160 28.873 284 192 3 84 365 14 289 4.99e-30 120
MS.gene29829.t1 AT1G19450 26.039 361 241 4 20 380 46 380 6.21e-30 122
MS.gene29829.t1 AT3G05400 31.343 268 166 6 116 381 79 330 7.48e-30 120
MS.gene29829.t1 AT2G35740 27.035 344 223 7 34 367 37 362 2.17e-29 121
MS.gene29829.t1 AT5G17010 25.910 467 266 11 20 418 44 498 2.97e-29 120
MS.gene29829.t1 AT5G17010 25.910 467 266 11 20 418 44 498 2.97e-29 120
MS.gene29829.t1 AT5G17010 25.910 467 266 11 20 418 44 498 2.97e-29 120
MS.gene29829.t1 AT1G08900 26.582 316 220 4 82 397 23 326 3.98e-29 118
MS.gene29829.t1 AT1G08900 27.957 279 193 3 82 360 65 335 4.57e-29 118
MS.gene29829.t1 AT1G08900 26.582 316 220 4 82 397 57 360 7.84e-29 118
MS.gene29829.t1 AT1G08900 27.957 279 193 3 82 360 65 335 9.14e-29 118
MS.gene29829.t1 AT1G08900 27.957 279 193 3 82 360 65 335 9.14e-29 118
MS.gene29829.t1 AT5G27350 24.377 361 243 6 4 362 12 344 9.18e-28 115
MS.gene29829.t1 AT4G04760 28.521 284 191 4 82 361 12 287 2.04e-27 113
MS.gene29829.t1 AT4G04760 28.889 270 181 3 82 348 71 332 2.11e-27 114
MS.gene29829.t1 AT4G04760 28.521 284 191 4 82 361 71 346 4.32e-27 113
MS.gene29829.t1 AT3G05150 28.859 298 196 4 82 374 75 361 9.90e-27 112
MS.gene29829.t1 AT3G05150 28.859 298 196 4 82 374 75 361 9.90e-27 112
MS.gene29829.t1 AT3G05150 28.859 298 196 4 82 374 75 361 1.01e-26 112
MS.gene29829.t1 AT1G67300 27.368 285 191 6 92 373 103 374 1.40e-26 111
MS.gene29829.t1 AT1G67300 27.368 285 191 6 92 373 103 374 1.40e-26 111
MS.gene29829.t1 AT3G05155 24.615 325 223 7 82 405 67 370 1.52e-26 111
MS.gene29829.t1 AT5G59250 26.724 348 226 8 22 353 97 431 2.03e-26 112
MS.gene29829.t1 AT1G67300 26.050 357 228 10 92 432 103 439 2.06e-26 111
MS.gene29829.t1 AT1G67300 26.050 357 228 10 92 432 103 439 2.06e-26 111
MS.gene29829.t1 AT1G67300 27.368 285 191 6 92 373 103 374 2.08e-26 111
MS.gene29829.t1 AT1G67300 27.368 285 191 6 92 373 103 374 2.08e-26 111
MS.gene29829.t1 AT3G05155 24.723 271 191 4 82 351 67 325 3.79e-26 108
MS.gene29829.t1 AT1G67300 27.174 276 192 5 92 364 103 372 6.27e-26 110
MS.gene29829.t1 AT1G79820 25.076 327 217 8 28 351 59 360 8.11e-26 109
MS.gene29829.t1 AT1G05030 24.709 344 233 8 21 361 77 397 1.15e-25 109
MS.gene29829.t1 AT5G27360 23.009 339 230 5 16 352 28 337 1.26e-25 108
MS.gene29829.t1 AT1G79820 25.076 327 217 8 28 351 59 360 1.44e-25 109
MS.gene29829.t1 AT1G79820 25.076 327 217 8 28 351 59 360 1.44e-25 109
MS.gene29829.t1 AT5G27360 23.009 339 230 5 16 352 28 337 2.26e-25 108
MS.gene29829.t1 AT1G08890 27.619 315 214 6 82 395 67 368 2.33e-25 108
MS.gene29829.t1 AT5G27360 23.009 339 230 5 16 352 76 385 2.44e-25 108
MS.gene29829.t1 AT1G05030 26.022 269 189 5 87 351 73 335 1.30e-24 106
MS.gene29829.t1 AT3G20460 25.979 281 196 4 82 361 93 362 1.93e-24 105
MS.gene29829.t1 AT4G04750 27.148 291 200 4 82 368 76 358 2.94e-24 105
MS.gene29829.t1 AT4G04750 27.148 291 200 4 82 368 76 358 2.94e-24 105
MS.gene29829.t1 AT4G04750 27.148 291 200 4 82 368 120 402 3.73e-24 105
MS.gene29829.t1 AT3G03090 25.221 452 258 11 35 418 59 498 6.77e-24 104
MS.gene29829.t1 AT1G08920 26.071 280 189 6 82 355 72 339 4.48e-23 101
MS.gene29829.t1 AT1G08920 26.071 280 189 6 82 355 72 339 4.74e-23 101
MS.gene29829.t1 AT5G18840 24.653 288 209 3 82 368 84 364 5.31e-23 101
MS.gene29829.t1 AT2G43330 25.507 345 233 7 27 365 35 361 1.11e-22 100
MS.gene29829.t1 AT5G27360 25.446 224 159 3 129 352 18 233 1.12e-22 99.4
MS.gene29829.t1 AT5G27360 25.446 224 159 3 129 352 18 233 1.12e-22 99.4
MS.gene29829.t1 AT1G08920 25.547 274 188 5 82 351 72 333 1.56e-22 100
MS.gene29829.t1 AT3G51490 31.383 188 125 4 87 272 2 187 1.15e-21 98.2
MS.gene29829.t1 AT3G51490 31.383 188 125 4 87 272 52 237 1.41e-21 98.2
MS.gene29829.t1 AT3G51490 31.383 188 125 4 87 272 52 237 1.44e-21 98.2
MS.gene29829.t1 AT5G17010 24.775 444 238 12 21 418 42 435 8.65e-21 94.7
MS.gene29829.t1 AT1G20840 26.702 191 137 3 90 278 52 241 8.56e-18 86.7
MS.gene29829.t1 AT1G20840 26.702 191 137 3 90 278 52 241 8.56e-18 86.7
MS.gene29829.t1 AT4G35300 32.184 174 114 4 87 258 52 223 1.43e-17 85.9
MS.gene29829.t1 AT4G35300 32.184 174 114 4 87 258 52 223 1.43e-17 85.9
MS.gene29829.t1 AT4G35300 32.184 174 114 4 87 258 52 223 1.43e-17 85.9
MS.gene29829.t1 AT4G35300 32.184 174 114 4 87 258 52 223 1.43e-17 85.9
MS.gene29829.t1 AT4G35300 32.184 174 114 4 87 258 52 223 1.43e-17 85.9
MS.gene29829.t1 AT4G35300 32.184 174 114 4 87 258 52 223 1.43e-17 85.9
MS.gene29829.t1 AT4G35300 32.184 174 114 4 87 258 52 223 1.43e-17 85.9
MS.gene29829.t1 AT4G35300 32.184 174 114 4 87 258 52 223 1.48e-17 85.9
MS.gene29829.t1 AT4G35300 32.184 174 114 4 87 258 52 223 1.48e-17 85.9
MS.gene29829.t1 AT4G35300 32.184 174 114 4 87 258 52 223 1.48e-17 85.9
MS.gene29829.t1 AT1G79820 22.683 410 272 11 28 420 59 440 2.45e-17 84.3
MS.gene29829.t1 AT1G79820 26.752 157 112 3 125 280 77 231 1.58e-12 69.3

Find 101 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGTCAATGTACATTATA+TGG 0.160882 3.4:+72885292 MS.gene29829:CDS
CTTGCTGGTGCTGCTATTAA+TGG 0.178937 3.4:+72883640 MS.gene29829:CDS
GCAGCCTTTCTTAGAATATC+TGG 0.181761 3.4:-72883457 None:intergenic
GGTCGTATTCTTCTTGGTTT+TGG 0.185325 3.4:+72883694 MS.gene29829:CDS
GGATATGACATTGGGATTTC+AGG 0.189475 3.4:+72882889 MS.gene29829:CDS
TTACTTTCTGCCGTTATTCT+TGG 0.197875 3.4:+72884583 MS.gene29829:CDS
ATCCTTGGTCGTATTCTTCT+TGG 0.222527 3.4:+72883688 MS.gene29829:CDS
ACGGGCTTCCAATTCTTCTT+AGG 0.243749 3.4:+72884136 MS.gene29829:CDS
CTGAAATTGCTCCACCAAAA+TGG 0.273388 3.4:+72884098 MS.gene29829:CDS
CTCTTTCAATCTGTGGGTTT+AGG 0.277247 3.4:+72884547 MS.gene29829:CDS
CTGAAAGCACCTCGCCATTT+TGG 0.278725 3.4:-72884112 None:intergenic
GGTGGTGCCATCTTTCTTGC+TGG 0.282200 3.4:+72883625 MS.gene29829:CDS
CTCTCAAATATGGTCATAAA+TGG 0.289729 3.4:-72884433 None:intergenic
TCTGCAATGCTTTCCTGGCT+TGG 0.290814 3.4:-72884324 None:intergenic
TATGGGGCAAACATTGGTTT+TGG 0.323870 3.4:+72885310 MS.gene29829:CDS
CGCCAACTCCTAAGAAGAAT+TGG 0.329302 3.4:-72884144 None:intergenic
CATTCTAATGCTTGTCTGTC+TGG 0.337879 3.4:+72884687 MS.gene29829:CDS
CGAAGATTCTTGTTCATTAC+GGG 0.343244 3.4:+72884661 MS.gene29829:CDS
GATGGCACCACCCAACATTA+TGG 0.359537 3.4:-72883614 None:intergenic
GCCACGTTCAACCAAGCTGC+TGG 0.360284 3.4:-72884293 None:intergenic
TCGATATTGTCTCTCAAATA+TGG 0.363219 3.4:-72884443 None:intergenic
TCGAAGATTCTTGTTCATTA+CGG 0.369531 3.4:+72884660 MS.gene29829:CDS
GGAGTCAATGTACATTATAT+GGG 0.376356 3.4:+72885293 MS.gene29829:CDS
ACCAATGTTGCGTTGCCCTT+TGG 0.386337 3.4:-72884994 None:intergenic
GGGAAGAATTTATTGAGAAA+TGG 0.402684 3.4:-72883436 None:intergenic
GGGCAACGCAACATTGGTAT+TGG 0.408706 3.4:+72884999 MS.gene29829:CDS
TGGGGCTGGCGACTCTCTCT+TGG 0.414296 3.4:+72884211 MS.gene29829:CDS
TGACTCCAAAGCAATTCCTT+TGG 0.421772 3.4:-72885277 None:intergenic
CTTCCCAGATATTCTAAGAA+AGG 0.422736 3.4:+72883453 MS.gene29829:CDS
AAAGCAATTCCTTTGGTCTC+AGG 0.428168 3.4:-72885270 None:intergenic
CCCACAGATTGAAAGAGGTT+TGG 0.431157 3.4:-72884541 None:intergenic
TTCCAATTCTTCTTAGGAGT+TGG 0.438586 3.4:+72884142 MS.gene29829:CDS
TGAGACCAAAGGAATTGCTT+TGG 0.446229 3.4:+72885272 MS.gene29829:CDS
CCTGCAGCCGTGATGACAAT+TGG 0.446393 3.4:+72884247 MS.gene29829:CDS
AAGGTTGAAAATGGCAGGTG+GGG 0.448174 3.4:+72882768 None:intergenic
CTAAACCCACAGATTGAAAG+AGG 0.452624 3.4:-72884546 None:intergenic
GCTTTGACGACTGGTATTCA+TGG 0.460359 3.4:+72884958 MS.gene29829:CDS
GCAATTTCAGAAAGGTATAG+TGG 0.472124 3.4:-72884085 None:intergenic
CCAAACCTCTTTCAATCTGT+GGG 0.474306 3.4:+72884541 MS.gene29829:CDS
GCCATTCGAAGGTGCATCAA+TGG 0.477746 3.4:-72882797 None:intergenic
CCAATTGTCATCACGGCTGC+AGG 0.478121 3.4:-72884247 None:intergenic
TCGCCAGCCCCATGTGTGCT+TGG 0.478528 3.4:-72884200 None:intergenic
GGAGTTGGCGTGGTTGCTGC+AGG 0.481761 3.4:+72884157 MS.gene29829:CDS
ACCAAACCTCTTTCAATCTG+TGG 0.482629 3.4:+72884540 MS.gene29829:CDS
TGTATTGTTGCTGCATCTAG+TGG 0.488167 3.4:+72882856 MS.gene29829:CDS
GCTTTGCTAGCTTTGACGAC+TGG 0.494629 3.4:+72884949 MS.gene29829:CDS
TGGCGAGGTGCTTTCAGCAC+GGG 0.494901 3.4:+72884118 MS.gene29829:CDS
TTACTATGTTTCTATGCCGC+AGG 0.496329 3.4:+72885024 MS.gene29829:CDS
GCCATTGATGCACCTTCGAA+TGG 0.498649 3.4:+72882796 MS.gene29829:CDS
CCAGCCCCATGTGTGCTTGG+CGG 0.503288 3.4:-72884197 None:intergenic
CAGCCTTTCTTAGAATATCT+GGG 0.503890 3.4:-72883456 None:intergenic
CCGCCAAGCACACATGGGGC+TGG 0.509706 3.4:+72884197 MS.gene29829:CDS
AGGTTGAAAATGGCAGGTGG+GGG 0.513919 3.4:+72882769 None:intergenic
CAACAAAAGCAGTTGAGACT+AGG 0.518496 3.4:-72884627 None:intergenic
CAAGGTTGAAAATGGCAGGT+GGG 0.519890 3.4:+72882767 None:intergenic
ACGTGACCGCCAAGCACACA+TGG 0.524547 3.4:+72884191 MS.gene29829:CDS
ATCCTCCATCGATGTTGAGC+CGG 0.528672 3.4:+72884357 MS.gene29829:CDS
TGCTGGGTGTGTCGGATATG+AGG 0.531185 3.4:-72884276 None:intergenic
CCACGTTCAACCAAGCTGCT+GGG 0.533955 3.4:-72884292 None:intergenic
ACATTATATGGGGCAAACAT+TGG 0.535333 3.4:+72885304 MS.gene29829:CDS
AGGACAAGGTTGAAAATGGC+AGG 0.542297 3.4:+72882763 None:intergenic
AACCAAGCTGCTGGGTGTGT+CGG 0.542991 3.4:-72884284 None:intergenic
TGTTAAAGGAGAAGTTGAGA+AGG 0.546071 3.4:+72885341 MS.gene29829:CDS
AGCAGCACCAGCAAGAAAGA+TGG 0.549935 3.4:-72883632 None:intergenic
AGCAAAGTCACTGCAGCTAT+CGG 0.550701 3.4:+72883580 MS.gene29829:CDS
GCACCTTCGAATGGCTTCGA+CGG 0.551765 3.4:+72882805 MS.gene29829:CDS
ATATCGACCTCACTTAATCA+TGG 0.560389 3.4:+72884459 MS.gene29829:CDS
ATCCGACACACCCAGCAGCT+TGG 0.562187 3.4:+72884282 MS.gene29829:CDS
TTGGTGGAGCAATTTCAGAA+AGG 0.562320 3.4:-72884093 None:intergenic
AGTTAGAAGAACTCATTAAG+TGG 0.568139 3.4:+72884380 MS.gene29829:CDS
GTGGCAAGATAGACCAAGCC+AGG 0.572272 3.4:+72884311 MS.gene29829:CDS
TAACTCCGGCTCAACATCGA+TGG 0.573428 3.4:-72884362 None:intergenic
TTAATGAGTTCTTCTAACTC+CGG 0.578406 3.4:-72884376 None:intergenic
GCCAAAGGGCAACGCAACAT+TGG 0.579145 3.4:+72884993 MS.gene29829:CDS
GCTGGTGCTGCTATTAATGG+AGG 0.590975 3.4:+72883643 MS.gene29829:CDS
GGTTGAAAATGGCAGGTGGG+GGG 0.597159 3.4:+72882770 None:intergenic
GAGTCAATGTACATTATATG+GGG 0.599950 3.4:+72885294 MS.gene29829:CDS
GGTACAAAGGACATGCCAAA+GGG 0.603557 3.4:+72884979 MS.gene29829:CDS
ATGGCGAGGTGCTTTCAGCA+CGG 0.604150 3.4:+72884117 MS.gene29829:CDS
GATATTCTAAGAAAGGCTGC+TGG 0.607230 3.4:+72883460 MS.gene29829:CDS
CCCAGCAGCTTGGTTGAACG+TGG 0.607250 3.4:+72884292 MS.gene29829:CDS
TTTCCGTCGAAGCCATTCGA+AGG 0.608818 3.4:-72882808 None:intergenic
GTTGACGAGTCCAAGAATAA+CGG 0.609102 3.4:-72884593 None:intergenic
TGGTACAAAGGACATGCCAA+AGG 0.609119 3.4:+72884978 MS.gene29829:CDS
AGATTCTTGTTCATTACGGG+TGG 0.611668 3.4:+72884664 MS.gene29829:CDS
CTCCGGCTCAACATCGATGG+AGG 0.621460 3.4:-72884359 None:intergenic
GAAGGCACCAATTGTCATCA+CGG 0.622211 3.4:-72884254 None:intergenic
ACTCTCTCTTGGACTAGCAG+TGG 0.636345 3.4:+72884222 MS.gene29829:CDS
ACAAGGTTGAAAATGGCAGG+TGG 0.636451 3.4:+72882766 None:intergenic
TTCAGGAGGTGTTACAACAA+TGG 0.637356 3.4:+72883411 MS.gene29829:intron
ATTCTTCTTAGGAGTTGGCG+TGG 0.637882 3.4:+72884147 MS.gene29829:CDS
AAAGCATTGCAGAAAATCAG+AGG 0.644118 3.4:+72884334 MS.gene29829:CDS
CGTGACCGCCAAGCACACAT+GGG 0.647731 3.4:+72884192 MS.gene29829:CDS
GACTGGTATTCATGGTACAA+AGG 0.648697 3.4:+72884966 MS.gene29829:CDS
GCAAATGCCATGATTAAGTG+AGG 0.668086 3.4:-72884466 None:intergenic
GGGTGTGTCGGATATGAGGA+AGG 0.669650 3.4:-72884272 None:intergenic
GTGACCGCCAAGCACACATG+GGG 0.676032 3.4:+72884193 MS.gene29829:CDS
ATTGCTCCACCAAAATGGCG+AGG 0.680520 3.4:+72884103 MS.gene29829:CDS
TTGAGACTAGGATAGAAGCA+AGG 0.681588 3.4:-72884615 None:intergenic
AACCAAGAAGAATACGACCA+AGG 0.682921 3.4:-72883690 None:intergenic
TCTGTGGGTTTAGGAAACAA+CGG 0.704878 3.4:+72884556 MS.gene29829:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAAAGTTAAATTAAAAAA+GGG - chr3.4:72883838-72883857 None:intergenic 10.0%
!! TAAAAGTTAAATTAAAAAAG+GGG - chr3.4:72883837-72883856 None:intergenic 10.0%
!! TAAATAATATTATACACATA+TGG - chr3.4:72884729-72884748 None:intergenic 10.0%
!! TTTATAATGAAAAAACAAAA+AGG - chr3.4:72882922-72882941 None:intergenic 10.0%
!!! ATTTTTCATTAGTAAAATTA+AGG - chr3.4:72883382-72883401 None:intergenic 10.0%
!!! TTTTTCATTAGTAAAATTAA+GGG - chr3.4:72883381-72883400 None:intergenic 10.0%
!! AAAAGTTAAATTAAAAAAGG+GGG - chr3.4:72883836-72883855 None:intergenic 15.0%
!! ATATAACTCAAGAATTAAAT+TGG + chr3.4:72883133-72883152 MS.gene29829:intron 15.0%
!! GCTAAAAGTTAAATTAAAAA+AGG - chr3.4:72883839-72883858 None:intergenic 15.0%
!!! AAAACATTTTCTTTCATTTT+GGG - chr3.4:72883008-72883027 None:intergenic 15.0%
!!! AAGCAAATTTATTTTAAACA+TGG - chr3.4:72884027-72884046 None:intergenic 15.0%
!!! AGTAGCAATATTTTAAATAA+AGG - chr3.4:72883986-72884005 None:intergenic 15.0%
!!! TAAAACATTTTCTTTCATTT+TGG - chr3.4:72883009-72883028 None:intergenic 15.0%
!!! TAATGATTTTGACATTTTAT+AGG - chr3.4:72883209-72883228 None:intergenic 15.0%
!!! TTTTATCTTCAAAATTTACT+TGG + chr3.4:72883330-72883349 MS.gene29829:intron 15.0%
!! ACATAAAAATCATAATGTTG+TGG + chr3.4:72883942-72883961 MS.gene29829:intron 20.0%
!! TGAAAAATGTTATCAAATTC+AGG + chr3.4:72883394-72883413 MS.gene29829:intron 20.0%
!!! AACATTGCTATTTAAAATTG+TGG - chr3.4:72883861-72883880 None:intergenic 20.0%
! AAAATGTTATCAAATTCAGG+AGG + chr3.4:72883397-72883416 MS.gene29829:intron 25.0%
! ATTGTATTACATGATGCAAT+TGG + chr3.4:72884051-72884070 MS.gene29829:intron 25.0%
! GATCAAATATAGTTGTATCT+TGG + chr3.4:72883911-72883930 MS.gene29829:intron 25.0%
! TAAAGGATGCTATCAAAATT+TGG - chr3.4:72883969-72883988 None:intergenic 25.0%
! TAAATTAAAAAAGGGGGAAA+TGG - chr3.4:72883830-72883849 None:intergenic 25.0%
! TAGACGGAGAAATTAAAATA+AGG - chr3.4:72884860-72884879 None:intergenic 25.0%
!! TTTCTTGTTCTATGCATTTT+GGG + chr3.4:72885212-72885231 MS.gene29829:intron 25.0%
!!! AATATTTTTATGCTCATCCT+TGG + chr3.4:72883673-72883692 MS.gene29829:CDS 25.0%
!!! TCATTTTTGGATATGACATT+GGG + chr3.4:72882881-72882900 MS.gene29829:CDS 25.0%
AAGCTCAATCACTATGTAAT+GGG + chr3.4:72883250-72883269 MS.gene29829:intron 30.0%
AGCAAAAAACATGCTCTAAT+TGG - chr3.4:72882949-72882968 None:intergenic 30.0%
AGTTAGAAGAACTCATTAAG+TGG + chr3.4:72884380-72884399 MS.gene29829:CDS 30.0%
CCTGTAAACTGTTGAAAAAA+CGG - chr3.4:72884496-72884515 None:intergenic 30.0%
CGAAAAAACACCATAATGTT+GGG + chr3.4:72883604-72883623 MS.gene29829:CDS 30.0%
CTCTCAAATATGGTCATAAA+TGG - chr3.4:72884436-72884455 None:intergenic 30.0%
CTGTAAACTGTTGAAAAAAC+GGG - chr3.4:72884495-72884514 None:intergenic 30.0%
GAATTAAATTGGACTCAACA+AGG + chr3.4:72883144-72883163 MS.gene29829:intron 30.0%
GAGTCAATGTACATTATATG+GGG + chr3.4:72885294-72885313 MS.gene29829:CDS 30.0%
GGAGTCAATGTACATTATAT+GGG + chr3.4:72885293-72885312 MS.gene29829:CDS 30.0%
GGGAAGAATTTATTGAGAAA+TGG - chr3.4:72883439-72883458 None:intergenic 30.0%
TAAGGACGAAAATTTAGAGA+CGG - chr3.4:72884842-72884861 None:intergenic 30.0%
TCGAAAAAACACCATAATGT+TGG + chr3.4:72883603-72883622 MS.gene29829:CDS 30.0%
TCGAAGATTCTTGTTCATTA+CGG + chr3.4:72884660-72884679 MS.gene29829:CDS 30.0%
TCGATATTGTCTCTCAAATA+TGG - chr3.4:72884446-72884465 None:intergenic 30.0%
TGGAGTCAATGTACATTATA+TGG + chr3.4:72885292-72885311 MS.gene29829:CDS 30.0%
TTAATGAGTTCTTCTAACTC+CGG - chr3.4:72884379-72884398 None:intergenic 30.0%
TTACATGATGCAATTGGAAA+AGG + chr3.4:72884057-72884076 MS.gene29829:intron 30.0%
TTTAAGGGGAAAATTTCACT+TGG - chr3.4:72885087-72885106 None:intergenic 30.0%
! CCAGTTGTTCTGATTTTTAA+GGG - chr3.4:72885102-72885121 None:intergenic 30.0%
! CTTTCTTGTTCTATGCATTT+TGG + chr3.4:72885211-72885230 MS.gene29829:intron 30.0%
! TCCAGTTGTTCTGATTTTTA+AGG - chr3.4:72885103-72885122 None:intergenic 30.0%
!! CAGTTGTTCTGATTTTTAAG+GGG - chr3.4:72885101-72885120 None:intergenic 30.0%
!! CTCATTTTTGGATATGACAT+TGG + chr3.4:72882880-72882899 MS.gene29829:CDS 30.0%
!!! AATCACTATGTAATGGGTTT+TGG + chr3.4:72883256-72883275 MS.gene29829:intron 30.0%
!!! CGTTTTTTCAACAGTTTACA+GGG + chr3.4:72884494-72884513 MS.gene29829:CDS 30.0%
AAAAACACCATAATGTTGGG+TGG + chr3.4:72883607-72883626 MS.gene29829:CDS 35.0%
AACTATTAGTACCAAACCAC+AGG - chr3.4:72884892-72884911 None:intergenic 35.0%
AATTTCACTTGGAATTAGCC+AGG - chr3.4:72885076-72885095 None:intergenic 35.0%
ACATTATATGGGGCAAACAT+TGG + chr3.4:72885304-72885323 MS.gene29829:CDS 35.0%
ATATCGACCTCACTTAATCA+TGG + chr3.4:72884459-72884478 MS.gene29829:CDS 35.0%
CAAGCTCAATCACTATGTAA+TGG + chr3.4:72883249-72883268 MS.gene29829:intron 35.0%
CAGCCTTTCTTAGAATATCT+GGG - chr3.4:72883459-72883478 None:intergenic 35.0%
CCCTTAAAAATCAGAACAAC+TGG + chr3.4:72885099-72885118 MS.gene29829:intron 35.0%
CGAAGATTCTTGTTCATTAC+GGG + chr3.4:72884661-72884680 MS.gene29829:CDS 35.0%
GTCTCATTGCTTGTGTATAA+TGG - chr3.4:72883808-72883827 None:intergenic 35.0%
TGTTAAAGGAGAAGTTGAGA+AGG + chr3.4:72885341-72885360 MS.gene29829:CDS 35.0%
TTACTTTCTGCCGTTATTCT+TGG + chr3.4:72884583-72884602 MS.gene29829:CDS 35.0%
TTCCAATTCTTCTTAGGAGT+TGG + chr3.4:72884142-72884161 MS.gene29829:CDS 35.0%
! CTTCCCAGATATTCTAAGAA+AGG + chr3.4:72883453-72883472 MS.gene29829:CDS 35.0%
! GCAATTTCAGAAAGGTATAG+TGG - chr3.4:72884088-72884107 None:intergenic 35.0%
! TTCTTTTTACCTGAGACCAA+AGG + chr3.4:72885261-72885280 MS.gene29829:CDS 35.0%
!! AAAGCATTGCAGAAAATCAG+AGG + chr3.4:72884334-72884353 MS.gene29829:CDS 35.0%
!! GTCGTATTCTTCTTGGTTTT+GGG + chr3.4:72883695-72883714 MS.gene29829:CDS 35.0%
!! TCTCAACTGCTTTTGTTGAT+CGG + chr3.4:72884632-72884651 MS.gene29829:CDS 35.0%
!!! CCGTTTTTTCAACAGTTTAC+AGG + chr3.4:72884493-72884512 MS.gene29829:CDS 35.0%
!!! TCGTATTCTTCTTGGTTTTG+GGG + chr3.4:72883696-72883715 MS.gene29829:CDS 35.0%
AAAGCAATTCCTTTGGTCTC+AGG - chr3.4:72885273-72885292 None:intergenic 40.0%
AACCAAGAAGAATACGACCA+AGG - chr3.4:72883693-72883712 None:intergenic 40.0%
ACCAAACCTCTTTCAATCTG+TGG + chr3.4:72884540-72884559 MS.gene29829:CDS 40.0%
ACTGGACAAAGTATAGCAGT+TGG + chr3.4:72885117-72885136 MS.gene29829:intron 40.0%
AGATTCTTGTTCATTACGGG+TGG + chr3.4:72884664-72884683 MS.gene29829:CDS 40.0%
ATAGTTGTATCTTGGTCGCA+GGG + chr3.4:72883919-72883938 MS.gene29829:intron 40.0%
ATCCTTGGTCGTATTCTTCT+TGG + chr3.4:72883688-72883707 MS.gene29829:CDS 40.0%
CAACAAAAGCAGTTGAGACT+AGG - chr3.4:72884630-72884649 None:intergenic 40.0%
CATTCTAATGCTTGTCTGTC+TGG + chr3.4:72884687-72884706 MS.gene29829:CDS 40.0%
CCAAACCTCTTTCAATCTGT+GGG + chr3.4:72884541-72884560 MS.gene29829:CDS 40.0%
CTAAACCCACAGATTGAAAG+AGG - chr3.4:72884549-72884568 None:intergenic 40.0%
CTCTGTAAGAACAAGAATCG+CGG - chr3.4:72883885-72883904 None:intergenic 40.0%
CTCTTTCAATCTGTGGGTTT+AGG + chr3.4:72884547-72884566 MS.gene29829:CDS 40.0%
CTGAAATTGCTCCACCAAAA+TGG + chr3.4:72884098-72884117 MS.gene29829:CDS 40.0%
GACTGGTATTCATGGTACAA+AGG + chr3.4:72884966-72884985 MS.gene29829:CDS 40.0%
GCAAATGCCATGATTAAGTG+AGG - chr3.4:72884469-72884488 None:intergenic 40.0%
GCAGCCTTTCTTAGAATATC+TGG - chr3.4:72883460-72883479 None:intergenic 40.0%
GGATATGACATTGGGATTTC+AGG + chr3.4:72882889-72882908 MS.gene29829:CDS 40.0%
GTTGACGAGTCCAAGAATAA+CGG - chr3.4:72884596-72884615 None:intergenic 40.0%
TAGTCGTTATACCTGTGGTT+TGG + chr3.4:72884878-72884897 MS.gene29829:intron 40.0%
TATAGTTGTATCTTGGTCGC+AGG + chr3.4:72883918-72883937 MS.gene29829:intron 40.0%
TCTGTGGGTTTAGGAAACAA+CGG + chr3.4:72884556-72884575 MS.gene29829:CDS 40.0%
TGACTCCAAAGCAATTCCTT+TGG - chr3.4:72885280-72885299 None:intergenic 40.0%
TGAGACCAAAGGAATTGCTT+TGG + chr3.4:72885272-72885291 MS.gene29829:CDS 40.0%
TGTATTGTTGCTGCATCTAG+TGG + chr3.4:72882856-72882875 MS.gene29829:CDS 40.0%
TTGAGACTAGGATAGAAGCA+AGG - chr3.4:72884618-72884637 None:intergenic 40.0%
TTGGTGGAGCAATTTCAGAA+AGG - chr3.4:72884096-72884115 None:intergenic 40.0%
! AAGGGTGAGCTTTATGACTT+TGG - chr3.4:72883363-72883382 None:intergenic 40.0%
! ATGCTATGCCACTTCAAGTT+TGG + chr3.4:72885186-72885205 MS.gene29829:intron 40.0%
! GATATTCTAAGAAAGGCTGC+TGG + chr3.4:72883460-72883479 MS.gene29829:CDS 40.0%
! GATTTTCTGCAATGCTTTCC+TGG - chr3.4:72884332-72884351 None:intergenic 40.0%
! GGTCGTATTCTTCTTGGTTT+TGG + chr3.4:72883694-72883713 MS.gene29829:CDS 40.0%
! TTACTATGTTTCTATGCCGC+AGG + chr3.4:72885024-72885043 MS.gene29829:CDS 40.0%
!! ACTGCTTTTGTTGATCGGTT+TGG + chr3.4:72884637-72884656 MS.gene29829:CDS 40.0%
!! AGAAAGCACCAAACTTGAAG+TGG - chr3.4:72885197-72885216 None:intergenic 40.0%
!! TTCAGGAGGTGTTACAACAA+TGG + chr3.4:72883411-72883430 MS.gene29829:intron 40.0%
!!! ATTCTTCTTGGTTTTGGGGT+CGG + chr3.4:72883700-72883719 MS.gene29829:CDS 40.0%
!!! GCATCTAGTGGACTCATTTT+TGG + chr3.4:72882868-72882887 MS.gene29829:CDS 40.0%
!!! TATGGGGCAAACATTGGTTT+TGG + chr3.4:72885310-72885329 MS.gene29829:CDS 40.0%
!!! TTTTGGCGGAGGTTTGTTAA+AGG + chr3.4:72885327-72885346 MS.gene29829:CDS 40.0%
ACGGGCTTCCAATTCTTCTT+AGG + chr3.4:72884136-72884155 MS.gene29829:CDS 45.0%
AGCAAAGTCACTGCAGCTAT+CGG + chr3.4:72883580-72883599 MS.gene29829:CDS 45.0%
ATTCTTCTTAGGAGTTGGCG+TGG + chr3.4:72884147-72884166 MS.gene29829:CDS 45.0%
CCACAGGTATAACGACTAGA+CGG - chr3.4:72884876-72884895 None:intergenic 45.0%
CCCACAGATTGAAAGAGGTT+TGG - chr3.4:72884544-72884563 None:intergenic 45.0%
CGATTCAACTAGTGATCCAC+TGG - chr3.4:72883069-72883088 None:intergenic 45.0%
CGCCAACTCCTAAGAAGAAT+TGG - chr3.4:72884147-72884166 None:intergenic 45.0%
GCTTTGACGACTGGTATTCA+TGG + chr3.4:72884958-72884977 MS.gene29829:CDS 45.0%
GGTACAAAGGACATGCCAAA+GGG + chr3.4:72884979-72884998 MS.gene29829:CDS 45.0%
TGGTACAAAGGACATGCCAA+AGG + chr3.4:72884978-72884997 MS.gene29829:CDS 45.0%
TTGGAATTAGCCAGGTGAGT+GGG - chr3.4:72885068-72885087 None:intergenic 45.0%
!! CTTGCTGGTGCTGCTATTAA+TGG + chr3.4:72883640-72883659 MS.gene29829:CDS 45.0%
!! GAAGGCACCAATTGTCATCA+CGG - chr3.4:72884257-72884276 None:intergenic 45.0%
!! GCTGACGCTTTGAAAGATTG+CGG + chr3.4:72884921-72884940 MS.gene29829:intron 45.0%
!! TGTTTCTATGCCGCAGGTTT+TGG + chr3.4:72885030-72885049 MS.gene29829:intron 45.0%
ACCAATGTTGCGTTGCCCTT+TGG - chr3.4:72884997-72885016 None:intergenic 50.0%
AGCAGCACCAGCAAGAAAGA+TGG - chr3.4:72883635-72883654 None:intergenic 50.0%
ATCCTCCATCGATGTTGAGC+CGG + chr3.4:72884357-72884376 MS.gene29829:CDS 50.0%
ATTGCTCCACCAAAATGGCG+AGG + chr3.4:72884103-72884122 MS.gene29829:CDS 50.0%
CCAAGACCAACCAAAACCTG+CGG - chr3.4:72885043-72885062 None:intergenic 50.0%
CCGTCTAGTCGTTATACCTG+TGG + chr3.4:72884873-72884892 MS.gene29829:intron 50.0%
CTTGGAATTAGCCAGGTGAG+TGG - chr3.4:72885069-72885088 None:intergenic 50.0%
GATCCACTGGTCAGTGACTT+TGG - chr3.4:72883056-72883075 None:intergenic 50.0%
GATGGCACCACCCAACATTA+TGG - chr3.4:72883617-72883636 None:intergenic 50.0%
GCCATTGATGCACCTTCGAA+TGG + chr3.4:72882796-72882815 MS.gene29829:CDS 50.0%
GGGCAACGCAACATTGGTAT+TGG + chr3.4:72884999-72885018 MS.gene29829:CDS 50.0%
TAACTCCGGCTCAACATCGA+TGG - chr3.4:72884365-72884384 None:intergenic 50.0%
TCTGCAATGCTTTCCTGGCT+TGG - chr3.4:72884327-72884346 None:intergenic 50.0%
TTGCCAAAGTCACTGACCAG+TGG + chr3.4:72883050-72883069 MS.gene29829:intron 50.0%
TTTCCGTCGAAGCCATTCGA+AGG - chr3.4:72882811-72882830 None:intergenic 50.0%
! GCCATTCGAAGGTGCATCAA+TGG - chr3.4:72882800-72882819 None:intergenic 50.0%
!! AAAGCACCTCGCCATTTTGG+TGG - chr3.4:72884112-72884131 None:intergenic 50.0%
!! ACTCTCTCTTGGACTAGCAG+TGG + chr3.4:72884222-72884241 MS.gene29829:CDS 50.0%
!! GCTGGTGCTGCTATTAATGG+AGG + chr3.4:72883643-72883662 MS.gene29829:CDS 50.0%
!! GCTTTGCTAGCTTTGACGAC+TGG + chr3.4:72884949-72884968 MS.gene29829:CDS 50.0%
!! TCTATGCCGCAGGTTTTGGT+TGG + chr3.4:72885034-72885053 MS.gene29829:intron 50.0%
!!! CGCAGGTTTTGGTTGGTCTT+GGG + chr3.4:72885041-72885060 MS.gene29829:intron 50.0%
!!! CTGAAAGCACCTCGCCATTT+TGG - chr3.4:72884115-72884134 None:intergenic 50.0%
!!! GCAAACATTGGTTTTGGCGG+AGG + chr3.4:72885316-72885335 MS.gene29829:CDS 50.0%
!!! GCAGGTTTTGGTTGGTCTTG+GGG + chr3.4:72885042-72885061 MS.gene29829:intron 50.0%
!!! GGGGCAAACATTGGTTTTGG+CGG + chr3.4:72885313-72885332 MS.gene29829:CDS 50.0%
AACCAAGCTGCTGGGTGTGT+CGG - chr3.4:72884287-72884306 None:intergenic 55.0%
CCAATTGTCATCACGGCTGC+AGG - chr3.4:72884250-72884269 None:intergenic 55.0%
CCACGTTCAACCAAGCTGCT+GGG - chr3.4:72884295-72884314 None:intergenic 55.0%
CCTGCAGCCGTGATGACAAT+TGG + chr3.4:72884247-72884266 MS.gene29829:CDS 55.0%
GCACCTTCGAATGGCTTCGA+CGG + chr3.4:72882805-72882824 MS.gene29829:CDS 55.0%
GCCAAAGGGCAACGCAACAT+TGG + chr3.4:72884993-72885012 MS.gene29829:CDS 55.0%
GGGTGTGTCGGATATGAGGA+AGG - chr3.4:72884275-72884294 None:intergenic 55.0%
GTGGCAAGATAGACCAAGCC+AGG + chr3.4:72884311-72884330 MS.gene29829:CDS 55.0%
TGCTGGGTGTGTCGGATATG+AGG - chr3.4:72884279-72884298 None:intergenic 55.0%
! ATGGCGAGGTGCTTTCAGCA+CGG + chr3.4:72884117-72884136 MS.gene29829:CDS 55.0%
!! GGTGGTGCCATCTTTCTTGC+TGG + chr3.4:72883625-72883644 MS.gene29829:CDS 55.0%
!!! CCGCAGGTTTTGGTTGGTCT+TGG + chr3.4:72885040-72885059 MS.gene29829:intron 55.0%
ACGTGACCGCCAAGCACACA+TGG + chr3.4:72884191-72884210 MS.gene29829:CDS 60.0%
ATCCGACACACCCAGCAGCT+TGG + chr3.4:72884282-72884301 MS.gene29829:CDS 60.0%
CCCAGCAGCTTGGTTGAACG+TGG + chr3.4:72884292-72884311 MS.gene29829:CDS 60.0%
CGTGACCGCCAAGCACACAT+GGG + chr3.4:72884192-72884211 MS.gene29829:CDS 60.0%
CTCCGGCTCAACATCGATGG+AGG - chr3.4:72884362-72884381 None:intergenic 60.0%
GCCACGTTCAACCAAGCTGC+TGG - chr3.4:72884296-72884315 None:intergenic 60.0%
GTGACCGCCAAGCACACATG+GGG + chr3.4:72884193-72884212 MS.gene29829:CDS 60.0%
! TGGCGAGGTGCTTTCAGCAC+GGG + chr3.4:72884118-72884137 MS.gene29829:CDS 60.0%
CCAGCCCCATGTGTGCTTGG+CGG - chr3.4:72884200-72884219 None:intergenic 65.0%
GGAGTTGGCGTGGTTGCTGC+AGG + chr3.4:72884157-72884176 MS.gene29829:CDS 65.0%
TCGCCAGCCCCATGTGTGCT+TGG - chr3.4:72884203-72884222 None:intergenic 65.0%
! TGGGGCTGGCGACTCTCTCT+TGG + chr3.4:72884211-72884230 MS.gene29829:CDS 65.0%
CCGCCAAGCACACATGGGGC+TGG + chr3.4:72884197-72884216 MS.gene29829:CDS 70.0%
GGTCTTGGGGCCCACTCACC+TGG + chr3.4:72885055-72885074 MS.gene29829:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 72882778 72885377 72882778 ID=MS.gene29829
chr3.4 mRNA 72882778 72885377 72882778 ID=MS.gene29829.t1;Parent=MS.gene29829
chr3.4 exon 72882778 72882910 72882778 ID=MS.gene29829.t1.exon1;Parent=MS.gene29829.t1
chr3.4 CDS 72882778 72882910 72882778 ID=cds.MS.gene29829.t1;Parent=MS.gene29829.t1
chr3.4 exon 72883416 72883735 72883416 ID=MS.gene29829.t1.exon2;Parent=MS.gene29829.t1
chr3.4 CDS 72883416 72883735 72883416 ID=cds.MS.gene29829.t1;Parent=MS.gene29829.t1
chr3.4 exon 72884079 72884708 72884079 ID=MS.gene29829.t1.exon3;Parent=MS.gene29829.t1
chr3.4 CDS 72884079 72884708 72884079 ID=cds.MS.gene29829.t1;Parent=MS.gene29829.t1
chr3.4 exon 72884937 72885045 72884937 ID=MS.gene29829.t1.exon4;Parent=MS.gene29829.t1
chr3.4 CDS 72884937 72885045 72884937 ID=cds.MS.gene29829.t1;Parent=MS.gene29829.t1
chr3.4 exon 72885241 72885377 72885241 ID=MS.gene29829.t1.exon5;Parent=MS.gene29829.t1
chr3.4 CDS 72885241 72885377 72885241 ID=cds.MS.gene29829.t1;Parent=MS.gene29829.t1
Gene Sequence

>MS.gene29829

ATGGCAGGTGGGGGGTTTGCCATTGATGCACCTTCGAATGGCTTCGACGGAAAGATAACACTCTCAGTTATCATTACTTGTATTGTTGCTGCATCTAGTGGACTCATTTTTGGATATGACATTGGGATTTCAGGTTTTCTTCCTTTTTGTTTTTTCATTATAAAGTATCCAATTAGAGCATGTTTTTTGCTTTTTAAAGATCTTGTATTCTGCTACATCAATCTTTGCCCAAAATGAAAGAAAATGTTTTAAACAATGTTTCAAATATCGACTTGCCAAAGTCACTGACCAGTGGATCACTAGTTGAATCGCATGATTTGTACTACTAATAGTTTTCAATTTGAATGATTTGATCATATAACTCAAGAATTAAATTGGACTCAACAAGGTGTCTGTTTCTGTAGAAAATTCTAAAAAAAAAACTTATACCTATAAAATGTCAAAATCATTAGAGAAATTAACAGAATTTCACAAGCTCAATCACTATGTAATGGGTTTTGGACAAAGTCTAATAATTGCATTTTACTCATGATGCTATACATTATTTTTACATTTTATCTTCAAAATTTACTTGGAGAAGAACCAAAGTCATAAAGCTCACCCTTAATTTTACTAATGAAAAATGTTATCAAATTCAGGAGGTGTTACAACAATGGTGCCATTTCTCAATAAATTCTTCCCAGATATTCTAAGAAAGGCTGCTGGTACTGAAGTAAACATGTACTGTGTGTATGACAGTCAAATGTTGACATTGTTTACGTCTTCTCTGTATCTAGCTGCGTTAGTGTCAACTCTTGTAGCTAGCAAAGTCACTGCAGCTATCGGTCGAAAAAACACCATAATGTTGGGTGGTGCCATCTTTCTTGCTGGTGCTGCTATTAATGGAGGTTCTGAAAATATTTTTATGCTCATCCTTGGTCGTATTCTTCTTGGTTTTGGGGTCGGTTTCACTAGTCAAGTAAGTGAACATAAACAATTATACACATTTGTTAATAGTAGTTCAACATCGTCAACAATATAAAATTTTCCATTATACACAAGCAATGAGACCATTTCCCCCTTTTTTAATTTAACTTTTAGCCACAATTTTAAATAGCAATGTTGCCGCGATTCTTGTTCTTACAGAGAATTGTGATCAAATATAGTTGTATCTTGGTCGCAGGGACATAAAAATCATAATGTTGTGGTCCAAATTTTGATAGCATCCTTTATTTAAAATATTGCTACTAACTTTTAACTTAATAAACCATGTTTAAAATAAATTTGCTTGCTAATTGTATTACATGATGCAATTGGAAAAGGCGACTCCACTATACCTTTCTGAAATTGCTCCACCAAAATGGCGAGGTGCTTTCAGCACGGGCTTCCAATTCTTCTTAGGAGTTGGCGTGGTTGCTGCAGGTTGCATAAATTACGTGACCGCCAAGCACACATGGGGCTGGCGACTCTCTCTTGGACTAGCAGTGGTGCCTGCAGCCGTGATGACAATTGGTGCCTTCCTCATATCCGACACACCCAGCAGCTTGGTTGAACGTGGCAAGATAGACCAAGCCAGGAAAGCATTGCAGAAAATCAGAGGATCCTCCATCGATGTTGAGCCGGAGTTAGAAGAACTCATTAAGTGGACAGAAGTTTCGAAATCAGTGCAAGAAGAGCCATTTATGACCATATTTGAGAGACAATATCGACCTCACTTAATCATGGCATTTGCAATCCCGTTTTTTCAACAGTTTACAGGGATCAACATCATCGCTTTCTATTCACCAAACCTCTTTCAATCTGTGGGTTTAGGAAACAACGGTGCTTTACTTTCTGCCGTTATTCTTGGACTCGTCAACCTTGCTTCTATCCTAGTCTCAACTGCTTTTGTTGATCGGTTTGGTCGAAGATTCTTGTTCATTACGGGTGGCATTCTAATGCTTGTCTGTCTGGTAAGAAAATTAAGCAACCATATGTGTATAATATTATTTATATTTATTTATTTATTGTTCTAGTATTTTCATATTCAACTATTAAAAAAAATGAAATAACGACAGAAAGATTGCAGTATTAATGCTTTTTCCGTCTCTAAATTTTCGTCCTTATTTTAATTTCTCCGTCTAGTCGTTATACCTGTGGTTTGGTACTAATAGTTATAATTTGTGCTGACGCTTTGAAAGATTGCGGTGTCTGCTTTGCTAGCTTTGACGACTGGTATTCATGGTACAAAGGACATGCCAAAGGGCAACGCAACATTGGTATTGGTTTTACTATGTTTCTATGCCGCAGGTTTTGGTTGGTCTTGGGGCCCACTCACCTGGCTAATTCCAAGTGAAATTTTCCCCTTAAAAATCAGAACAACTGGACAAAGTATAGCAGTTGGTGTACAATTTATAATCGTGTTTGTGTTATCACAAACATTCTTGACAATGCTATGCCACTTCAAGTTTGGTGCTTTCTTGTTCTATGCATTTTGGGTTGCAGTGATGACACTATTTATTATTTTCTTTTTACCTGAGACCAAAGGAATTGCTTTGGAGTCAATGTACATTATATGGGGCAAACATTGGTTTTGGCGGAGGTTTGTTAAAGGAGAAGTTGAGAAGGACAATCTTCCATGA
Protein sequence

>MS.gene29829.t1

MAGGGFAIDAPSNGFDGKITLSVIITCIVAASSGLIFGYDIGISGGVTTMVPFLNKFFPDILRKAAGTEVNMYCVYDSQMLTLFTSSLYLAALVSTLVASKVTAAIGRKNTIMLGGAIFLAGAAINGGSENIFMLILGRILLGFGVGFTSQATPLYLSEIAPPKWRGAFSTGFQFFLGVGVVAAGCINYVTAKHTWGWRLSLGLAVVPAAVMTIGAFLISDTPSSLVERGKIDQARKALQKIRGSSIDVEPELEELIKWTEVSKSVQEEPFMTIFERQYRPHLIMAFAIPFFQQFTGINIIAFYSPNLFQSVGLGNNGALLSAVILGLVNLASILVSTAFVDRFGRRFLFITGGILMLVCLIAVSALLALTTGIHGTKDMPKGNATLVLVLLCFYAAVMTLFIIFFLPETKGIALESMYIIWGKHWFWRRFVKGEVEKDNLP