Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33056.t1 | XP_024631065.1 | 99.1 | 438 | 4 | 0 | 73 | 510 | 98 | 535 | 7.30E-253 | 882.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33056.t1 | Q9M2U3 | 30.4 | 326 | 187 | 10 | 169 | 467 | 54 | 366 | 2.3e-37 | 158.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33056.t1 | A0A396JK50 | 99.1 | 438 | 4 | 0 | 73 | 510 | 98 | 535 | 5.2e-253 | 882.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene33056 | 0.828051 | 1.11E-54 | -1.69E-46 |
| MS.gene04917 | MS.gene33056 | 0.826531 | 2.58E-54 | -1.69E-46 |
| MS.gene049801 | MS.gene33056 | 0.810914 | 9.09E-51 | -1.69E-46 |
| MS.gene04991 | MS.gene33056 | -0.810904 | 9.14E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene33056 | 0.816681 | 4.88E-52 | -1.69E-46 |
| MS.gene04998 | MS.gene33056 | 0.808059 | 3.73E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene33056 | 0.84872 | 5.12E-60 | -1.69E-46 |
| MS.gene050737 | MS.gene33056 | 0.819005 | 1.46E-52 | -1.69E-46 |
| MS.gene050941 | MS.gene33056 | 0.834219 | 3.40E-56 | -1.69E-46 |
| MS.gene051184 | MS.gene33056 | 0.864693 | 1.01E-64 | -1.69E-46 |
| MS.gene051275 | MS.gene33056 | 0.806671 | 7.34E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene33056 | 0.955007 | 8.14E-113 | -1.69E-46 |
| MS.gene051655 | MS.gene33056 | 0.820763 | 5.78E-53 | -1.69E-46 |
| MS.gene051831 | MS.gene33056 | 0.803394 | 3.56E-49 | -1.69E-46 |
| MS.gene052118 | MS.gene33056 | 0.830286 | 3.20E-55 | -1.69E-46 |
| MS.gene052493 | MS.gene33056 | 0.805682 | 1.19E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene33056 | 0.802173 | 6.36E-49 | -1.69E-46 |
| MS.gene053215 | MS.gene33056 | 0.816757 | 4.69E-52 | -1.69E-46 |
| MS.gene053726 | MS.gene33056 | 0.833725 | 4.52E-56 | -1.69E-46 |
| MS.gene05439 | MS.gene33056 | 0.801915 | 7.19E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene33056 | 0.825083 | 5.69E-54 | -1.69E-46 |
| MS.gene054892 | MS.gene33056 | 0.855928 | 4.54E-62 | -1.69E-46 |
| MS.gene054893 | MS.gene33056 | 0.854067 | 1.58E-61 | -1.69E-46 |
| MS.gene055327 | MS.gene33056 | 0.860555 | 1.90E-63 | -1.69E-46 |
| MS.gene055442 | MS.gene33056 | 0.81148 | 6.85E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene33056 | 0.846827 | 1.70E-59 | -1.69E-46 |
| MS.gene057622 | MS.gene33056 | 0.802696 | 4.96E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene33056 | 0.814949 | 1.19E-51 | -1.69E-46 |
| MS.gene058429 | MS.gene33056 | 0.957672 | 1.54E-115 | -1.69E-46 |
| MS.gene059170 | MS.gene33056 | 0.814608 | 1.41E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene33056 | 0.831545 | 1.57E-55 | -1.69E-46 |
| MS.gene060259 | MS.gene33056 | 0.840964 | 6.33E-58 | -1.69E-46 |
| MS.gene060413 | MS.gene33056 | 0.80616 | 9.42E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene33056 | 0.829399 | 5.26E-55 | -1.69E-46 |
| MS.gene060850 | MS.gene33056 | 0.847853 | 8.89E-60 | -1.69E-46 |
| MS.gene060851 | MS.gene33056 | 0.858205 | 9.67E-63 | -1.69E-46 |
| MS.gene060852 | MS.gene33056 | 0.857185 | 1.94E-62 | -1.69E-46 |
| MS.gene060932 | MS.gene33056 | 0.83442 | 3.03E-56 | -1.69E-46 |
| MS.gene06121 | MS.gene33056 | 0.827773 | 1.30E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33056.t1 | AT5G12010 | 68.017 | 469 | 148 | 1 | 42 | 510 | 36 | 502 | 0.0 | 692 |
| MS.gene33056.t1 | AT4G29780 | 57.002 | 507 | 212 | 3 | 5 | 510 | 39 | 540 | 0.0 | 579 |
| MS.gene33056.t1 | AT3G55350 | 30.556 | 324 | 185 | 10 | 169 | 465 | 54 | 364 | 4.86e-43 | 158 |
| MS.gene33056.t1 | AT3G63270 | 29.874 | 318 | 181 | 8 | 169 | 456 | 44 | 349 | 2.94e-40 | 150 |
| MS.gene33056.t1 | AT3G19120 | 24.919 | 309 | 194 | 9 | 183 | 471 | 117 | 407 | 6.01e-22 | 99.0 |
| MS.gene33056.t1 | AT1G72275 | 25.424 | 295 | 163 | 10 | 187 | 465 | 101 | 354 | 1.25e-17 | 85.5 |
| MS.gene33056.t1 | AT1G72275 | 25.424 | 295 | 163 | 10 | 187 | 465 | 101 | 354 | 1.54e-17 | 85.5 |
Find 75 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGATTGTTGGTAGTTC+AGG | 0.230857 | 1.1:-6660217 | MS.gene33056:CDS |
| GAACAAGAAGGAAGAAATAA+AGG | 0.232924 | 1.1:-6661217 | MS.gene33056:CDS |
| TAGTTCAGGGTATCCTTTAA+TGG | 0.269828 | 1.1:-6660203 | MS.gene33056:CDS |
| CTCTTAGAATTGTTTCAAAA+AGG | 0.277622 | 1.1:-6660645 | MS.gene33056:CDS |
| AAAGAGTAGCTGTTTGTCTT+TGG | 0.293816 | 1.1:-6660687 | MS.gene33056:CDS |
| CTAATCTTAGGAGCTATAAT+TGG | 0.309776 | 1.1:+6660439 | None:intergenic |
| CTTAAAGGTGTTTGGATTGT+TGG | 0.311954 | 1.1:-6660226 | MS.gene33056:CDS |
| AATAATGGAGGACTTCTTAA+AGG | 0.315082 | 1.1:-6660241 | MS.gene33056:CDS |
| TGAGATGAAAGGTGAGAAAA+TGG | 0.322872 | 1.1:-6659975 | MS.gene33056:CDS |
| GAGGACTTCTTAAAGGTGTT+TGG | 0.323578 | 1.1:-6660234 | MS.gene33056:CDS |
| AGGGTATCCTTTAATGGATT+GGG | 0.331257 | 1.1:-6660197 | MS.gene33056:CDS |
| ACTAAAACCCAATCCATTAA+AGG | 0.331503 | 1.1:+6660190 | None:intergenic |
| TTTCTCAAAGAAGCATCATT+AGG | 0.355787 | 1.1:+6660532 | None:intergenic |
| TAAGCAGCAACACTAATCTT+AGG | 0.360457 | 1.1:+6660427 | None:intergenic |
| GCTTTCTTAAACTCATGTTC+AGG | 0.371260 | 1.1:+6660811 | None:intergenic |
| CAACAAGCACCAAGTACAAC+AGG | 0.372673 | 1.1:+6660016 | None:intergenic |
| TACATGGACCCTACAACATT+TGG | 0.373103 | 1.1:+6660475 | None:intergenic |
| CAAGATTTGCCTGTTGTACT+TGG | 0.374359 | 1.1:-6660025 | MS.gene33056:CDS |
| ACTATAACCATCTTCAAGAT+TGG | 0.374608 | 1.1:+6661056 | None:intergenic |
| CAGGGTATCCTTTAATGGAT+TGG | 0.376667 | 1.1:-6660198 | MS.gene33056:CDS |
| GAAAATGGATCCTGAACTTA+TGG | 0.387747 | 1.1:-6659960 | MS.gene33056:CDS |
| GGTGGTCTTGTTTGCAGAAA+AGG | 0.390719 | 1.1:-6660063 | MS.gene33056:CDS |
| GTGGTTCACAGAGAAGGCTT+TGG | 0.396821 | 1.1:-6660885 | MS.gene33056:CDS |
| TCATATTCAATAACTGTTCA+AGG | 0.402367 | 1.1:-6660367 | MS.gene33056:CDS |
| GAGATCTGTTAATTCATTGA+AGG | 0.403396 | 1.1:-6659897 | MS.gene33056:CDS |
| TTTGGATTGTTGGTAGTTCA+GGG | 0.411269 | 1.1:-6660216 | MS.gene33056:CDS |
| AAGAATCAGAGAAAGTTAGA+AGG | 0.413375 | 1.1:-6661026 | MS.gene33056:CDS |
| ATACTCAACAAAATCTTACT+TGG | 0.425165 | 1.1:-6660162 | MS.gene33056:CDS |
| TCACCGATGTTTGTATTGGT+TGG | 0.428614 | 1.1:-6660321 | MS.gene33056:CDS |
| CATGGTTTCAATGAGAAGAT+TGG | 0.432259 | 1.1:-6660133 | MS.gene33056:CDS |
| TATTACTCCAATCTTGAAGA+TGG | 0.432845 | 1.1:-6661063 | MS.gene33056:CDS |
| TGGTTCACAGAGAAGGCTTT+GGG | 0.436294 | 1.1:-6660884 | MS.gene33056:CDS |
| TGATATTGTTGATGATGAAA+TGG | 0.440386 | 1.1:-6659936 | MS.gene33056:CDS |
| TTTAAGAAAGCATTTAGAAT+GGG | 0.440670 | 1.1:-6660799 | MS.gene33056:CDS |
| AACAAGAAGGAAGAAATAAA+GGG | 0.452595 | 1.1:-6661216 | MS.gene33056:CDS |
| TCAGGTATTCCAAATGTTGT+AGG | 0.454924 | 1.1:-6660484 | MS.gene33056:CDS |
| AATGAATTTGAGGGTATGTC+AGG | 0.456547 | 1.1:-6660502 | MS.gene33056:CDS |
| CTTTGGGTGAAGGATCGTTC+AGG | 0.457053 | 1.1:-6660868 | MS.gene33056:CDS |
| GTTGAAGTAGCAGTGTTGTT+TGG | 0.468143 | 1.1:+6661336 | None:intergenic |
| CAAGGTGTTGTTGATACAAA+TGG | 0.471226 | 1.1:-6660349 | MS.gene33056:CDS |
| GTTTAAGAAAGCATTTAGAA+TGG | 0.473472 | 1.1:-6660800 | MS.gene33056:CDS |
| GATGCATTTGCTAGATTGAA+AGG | 0.474433 | 1.1:-6660088 | MS.gene33056:CDS |
| TTATGCCTAAGTATCTTCAA+TGG | 0.481589 | 1.1:-6660555 | MS.gene33056:CDS |
| ACAATATCAACCATAAGTTC+AGG | 0.481741 | 1.1:+6659950 | None:intergenic |
| TTAGGCCATTGAAGATACTT+AGG | 0.483192 | 1.1:+6660550 | None:intergenic |
| ACAGATCTCAAACTAACTTC+AGG | 0.483330 | 1.1:+6659911 | None:intergenic |
| ACAGAGAAGGCTTTGGGTGA+AGG | 0.490197 | 1.1:-6660878 | MS.gene33056:CDS |
| GTTAACAGTGGTAAATCTAA+TGG | 0.492715 | 1.1:-6660910 | MS.gene33056:CDS |
| TGTCTTTGGAGATTAGCAAC+AGG | 0.494224 | 1.1:-6660673 | MS.gene33056:CDS |
| ACAGCTACTCTTTGTCTCAC+TGG | 0.502124 | 1.1:+6660697 | None:intergenic |
| CATGATGGTTCAATCAATGA+AGG | 0.537105 | 1.1:-6661258 | MS.gene33056:CDS |
| CATTTGCTAGATTGAAAGGT+AGG | 0.539789 | 1.1:-6660084 | MS.gene33056:CDS |
| TGATCATCAGGCATTGAACC+AGG | 0.554947 | 1.1:+6660298 | None:intergenic |
| GATGTTTGTATTGGTTGGCC+TGG | 0.556233 | 1.1:-6660316 | MS.gene33056:CDS |
| TGAAGGATCGTTCAGGAGCA+TGG | 0.560723 | 1.1:-6660861 | MS.gene33056:CDS |
| CAGGTATTCCAAATGTTGTA+GGG | 0.561344 | 1.1:-6660483 | MS.gene33056:CDS |
| AATCTTACTTGGACACAACA+TGG | 0.563523 | 1.1:-6660151 | MS.gene33056:CDS |
| TTTCAAAGGGCTAATAATGG+AGG | 0.570430 | 1.1:-6660253 | MS.gene33056:CDS |
| GGATCGTTCAGGAGCATGGT+GGG | 0.571189 | 1.1:-6660857 | MS.gene33056:CDS |
| AGTGGTAAATCTAATGGTGG+TGG | 0.574512 | 1.1:-6660904 | MS.gene33056:CDS |
| CATAACATTTGTGAGATGAA+AGG | 0.582865 | 1.1:-6659986 | MS.gene33056:CDS |
| TGGAACATGTGATGTATACA+TGG | 0.583023 | 1.1:+6660459 | None:intergenic |
| ATGGTGGTGGTTCACAGAGA+AGG | 0.584341 | 1.1:-6660891 | MS.gene33056:CDS |
| TAAGAAGAAAACAAAAGCCA+TGG | 0.591085 | 1.1:-6661091 | MS.gene33056:CDS |
| GGTTCAATCAATGAAGGAGG+TGG | 0.597376 | 1.1:-6661252 | MS.gene33056:CDS |
| TTGCTAGATTGAAAGGTAGG+TGG | 0.638704 | 1.1:-6660081 | MS.gene33056:CDS |
| AGGCCAACCAATACAAACAT+CGG | 0.640109 | 1.1:+6660318 | None:intergenic |
| AATGTTAATGATGTTAACAG+TGG | 0.645570 | 1.1:-6660922 | MS.gene33056:CDS |
| AGATAGCAAGAAAGTCTCAG+AGG | 0.655824 | 1.1:-6661142 | MS.gene33056:CDS |
| GATGATGATGAAGATCATGA+TGG | 0.669772 | 1.1:-6661273 | MS.gene33056:CDS |
| ATTGGAGTAATAATCAACCA+TGG | 0.670136 | 1.1:+6661074 | None:intergenic |
| GATGGTTCAATCAATGAAGG+AGG | 0.671209 | 1.1:-6661255 | MS.gene33056:CDS |
| AGGATCGTTCAGGAGCATGG+TGG | 0.682307 | 1.1:-6660858 | MS.gene33056:CDS |
| AACAGTGGTAAATCTAATGG+TGG | 0.686560 | 1.1:-6660907 | MS.gene33056:CDS |
| TTAACAAGAGACATACTGAG+AGG | 0.717249 | 1.1:-6660402 | MS.gene33056:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAAAATGAATTTG+AGG | - | chr1.1:6660668-6660687 | MS.gene33056:CDS | 10.0% |
| !! | AAAATTAAAAATGAATTTGA+GGG | - | chr1.1:6660669-6660688 | MS.gene33056:CDS | 10.0% |
| !!! | TTTAAGAAAGCATTTAGAAT+GGG | - | chr1.1:6660381-6660400 | MS.gene33056:CDS | 20.0% |
| ! | AACAAGAAGGAAGAAATAAA+GGG | - | chr1.1:6659964-6659983 | MS.gene33056:CDS | 25.0% |
| ! | AATGTTAATGATGTTAACAG+TGG | - | chr1.1:6660258-6660277 | MS.gene33056:CDS | 25.0% |
| ! | AGAATTGTTTCAAAAAGGTT+TGG | - | chr1.1:6660540-6660559 | MS.gene33056:CDS | 25.0% |
| ! | ATACTCAACAAAATCTTACT+TGG | - | chr1.1:6661018-6661037 | MS.gene33056:CDS | 25.0% |
| ! | CTCTTAGAATTGTTTCAAAA+AGG | - | chr1.1:6660535-6660554 | MS.gene33056:CDS | 25.0% |
| ! | TCATATTCAATAACTGTTCA+AGG | - | chr1.1:6660813-6660832 | MS.gene33056:CDS | 25.0% |
| !! | GTAAGATTTTGTTGAGTATA+AGG | + | chr1.1:6661017-6661036 | None:intergenic | 25.0% |
| !!! | AAAAATCAGCACTTTTTCAA+AGG | - | chr1.1:6660913-6660932 | MS.gene33056:CDS | 25.0% |
| !!! | AAAATCAGCACTTTTTCAAA+GGG | - | chr1.1:6660914-6660933 | MS.gene33056:CDS | 25.0% |
| !!! | AATTTTGAAGCAAATAGTGA+AGG | - | chr1.1:6660231-6660250 | MS.gene33056:CDS | 25.0% |
| !!! | CTTTTTGAAACAATTCTAAG+AGG | + | chr1.1:6660537-6660556 | None:intergenic | 25.0% |
| !!! | GTTTAAGAAAGCATTTAGAA+TGG | - | chr1.1:6660380-6660399 | MS.gene33056:CDS | 25.0% |
| !!! | TGATATTGTTGATGATGAAA+TGG | - | chr1.1:6661244-6661263 | MS.gene33056:CDS | 25.0% |
| AAGAATCAGAGAAAGTTAGA+AGG | - | chr1.1:6660154-6660173 | MS.gene33056:CDS | 30.0% | |
| ACAATATCAACCATAAGTTC+AGG | + | chr1.1:6661233-6661252 | None:intergenic | 30.0% | |
| ACTAAAACCCAATCCATTAA+AGG | + | chr1.1:6660993-6661012 | None:intergenic | 30.0% | |
| ACTATAACCATCTTCAAGAT+TGG | + | chr1.1:6660127-6660146 | None:intergenic | 30.0% | |
| ATTGGAGTAATAATCAACCA+TGG | + | chr1.1:6660109-6660128 | None:intergenic | 30.0% | |
| CAAAAACAAGAAGAACAAGA+AGG | - | chr1.1:6659951-6659970 | MS.gene33056:CDS | 30.0% | |
| CATAACATTTGTGAGATGAA+AGG | - | chr1.1:6661194-6661213 | MS.gene33056:CDS | 30.0% | |
| CTAATCTTAGGAGCTATAAT+TGG | + | chr1.1:6660744-6660763 | None:intergenic | 30.0% | |
| GAACAAGAAGGAAGAAATAA+AGG | - | chr1.1:6659963-6659982 | MS.gene33056:CDS | 30.0% | |
| GAGATCTGTTAATTCATTGA+AGG | - | chr1.1:6661283-6661302 | MS.gene33056:CDS | 30.0% | |
| GTTAACAGTGGTAAATCTAA+TGG | - | chr1.1:6660270-6660289 | MS.gene33056:CDS | 30.0% | |
| TAAGAAGAAAACAAAAGCCA+TGG | - | chr1.1:6660089-6660108 | MS.gene33056:CDS | 30.0% | |
| TATTACTCCAATCTTGAAGA+TGG | - | chr1.1:6660117-6660136 | MS.gene33056:CDS | 30.0% | |
| TTATGCCTAAGTATCTTCAA+TGG | - | chr1.1:6660625-6660644 | MS.gene33056:CDS | 30.0% | |
| ! | AATAATGGAGGACTTCTTAA+AGG | - | chr1.1:6660939-6660958 | MS.gene33056:CDS | 30.0% |
| ! | GTTTCAAAAAGGTTTGGTTT+AGG | - | chr1.1:6660546-6660565 | MS.gene33056:CDS | 30.0% |
| ! | TTTTCTAACACTTGATCATC+AGG | + | chr1.1:6660897-6660916 | None:intergenic | 30.0% |
| !! | TTTCTCAAAGAAGCATCATT+AGG | + | chr1.1:6660651-6660670 | None:intergenic | 30.0% |
| !!! | CTTTTTCAAAGGGCTAATAA+TGG | - | chr1.1:6660924-6660943 | MS.gene33056:CDS | 30.0% |
| AAAGAGTAGCTGTTTGTCTT+TGG | - | chr1.1:6660493-6660512 | MS.gene33056:CDS | 35.0% | |
| AACAGTGGTAAATCTAATGG+TGG | - | chr1.1:6660273-6660292 | MS.gene33056:CDS | 35.0% | |
| AATCTTACTTGGACACAACA+TGG | - | chr1.1:6661029-6661048 | MS.gene33056:CDS | 35.0% | |
| ACAGATCTCAAACTAACTTC+AGG | + | chr1.1:6661272-6661291 | None:intergenic | 35.0% | |
| AGACGCAGAAAAAATGAAGA+TGG | - | chr1.1:6659880-6659899 | MS.gene33056:CDS | 35.0% | |
| CAGGTATTCCAAATGTTGTA+GGG | - | chr1.1:6660697-6660716 | MS.gene33056:CDS | 35.0% | |
| CATGATGGTTCAATCAATGA+AGG | - | chr1.1:6659922-6659941 | MS.gene33056:CDS | 35.0% | |
| CATGGTTTCAATGAGAAGAT+TGG | - | chr1.1:6661047-6661066 | MS.gene33056:CDS | 35.0% | |
| GAAAATGGATCCTGAACTTA+TGG | - | chr1.1:6661220-6661239 | MS.gene33056:CDS | 35.0% | |
| GCTTTCTTAAACTCATGTTC+AGG | + | chr1.1:6660372-6660391 | None:intergenic | 35.0% | |
| TAAGCAGCAACACTAATCTT+AGG | + | chr1.1:6660756-6660775 | None:intergenic | 35.0% | |
| TCAGGTATTCCAAATGTTGT+AGG | - | chr1.1:6660696-6660715 | MS.gene33056:CDS | 35.0% | |
| TGAGATGAAAGGTGAGAAAA+TGG | - | chr1.1:6661205-6661224 | MS.gene33056:CDS | 35.0% | |
| TGGAACATGTGATGTATACA+TGG | + | chr1.1:6660724-6660743 | None:intergenic | 35.0% | |
| TTAACAAGAGACATACTGAG+AGG | - | chr1.1:6660778-6660797 | MS.gene33056:CDS | 35.0% | |
| TTAGGCCATTGAAGATACTT+AGG | + | chr1.1:6660633-6660652 | None:intergenic | 35.0% | |
| TTTCAAAGGGCTAATAATGG+AGG | - | chr1.1:6660927-6660946 | MS.gene33056:CDS | 35.0% | |
| ! | AATGAATTTGAGGGTATGTC+AGG | - | chr1.1:6660678-6660697 | MS.gene33056:CDS | 35.0% |
| ! | CATTTGCTAGATTGAAAGGT+AGG | - | chr1.1:6661096-6661115 | MS.gene33056:CDS | 35.0% |
| ! | GATGATGATGAAGATCATGA+TGG | - | chr1.1:6659907-6659926 | MS.gene33056:CDS | 35.0% |
| ! | GATGCATTTGCTAGATTGAA+AGG | - | chr1.1:6661092-6661111 | MS.gene33056:CDS | 35.0% |
| ! | GCTCATAATCTTTTGCATCA+TGG | - | chr1.1:6661320-6661339 | MS.gene33056:CDS | 35.0% |
| ! | GTTTTCACCGATGTTTGTAT+TGG | - | chr1.1:6660855-6660874 | MS.gene33056:CDS | 35.0% |
| ! | TAGTTCAGGGTATCCTTTAA+TGG | - | chr1.1:6660977-6660996 | MS.gene33056:CDS | 35.0% |
| !! | AGGGTATCCTTTAATGGATT+GGG | - | chr1.1:6660983-6661002 | MS.gene33056:CDS | 35.0% |
| !! | CAAGGTGTTGTTGATACAAA+TGG | - | chr1.1:6660831-6660850 | MS.gene33056:CDS | 35.0% |
| !! | CTTAAAGGTGTTTGGATTGT+TGG | - | chr1.1:6660954-6660973 | MS.gene33056:CDS | 35.0% |
| !! | TTTGGATTGTTGGTAGTTCA+GGG | - | chr1.1:6660964-6660983 | MS.gene33056:CDS | 35.0% |
| AGATAGCAAGAAAGTCTCAG+AGG | - | chr1.1:6660038-6660057 | MS.gene33056:CDS | 40.0% | |
| AGGCCAACCAATACAAACAT+CGG | + | chr1.1:6660865-6660884 | None:intergenic | 40.0% | |
| AGTGGTAAATCTAATGGTGG+TGG | - | chr1.1:6660276-6660295 | MS.gene33056:CDS | 40.0% | |
| CAAGATTTGCCTGTTGTACT+TGG | - | chr1.1:6661155-6661174 | MS.gene33056:CDS | 40.0% | |
| CGCAGAAAAAATGAAGATGG+TGG | - | chr1.1:6659883-6659902 | MS.gene33056:CDS | 40.0% | |
| GATGGTTCAATCAATGAAGG+AGG | - | chr1.1:6659925-6659944 | MS.gene33056:CDS | 40.0% | |
| TACATGGACCCTACAACATT+TGG | + | chr1.1:6660708-6660727 | None:intergenic | 40.0% | |
| TTGCTAGATTGAAAGGTAGG+TGG | - | chr1.1:6661099-6661118 | MS.gene33056:CDS | 40.0% | |
| ! | CAGGGTATCCTTTAATGGAT+TGG | - | chr1.1:6660982-6661001 | MS.gene33056:CDS | 40.0% |
| ! | CTTTTGCATCATGGTTTAGC+AGG | - | chr1.1:6661329-6661348 | MS.gene33056:CDS | 40.0% |
| ! | GTTGAAGTAGCAGTGTTGTT+TGG | + | chr1.1:6659847-6659866 | None:intergenic | 40.0% |
| ! | TCACCGATGTTTGTATTGGT+TGG | - | chr1.1:6660859-6660878 | MS.gene33056:CDS | 40.0% |
| ! | TGTCTTTGGAGATTAGCAAC+AGG | - | chr1.1:6660507-6660526 | MS.gene33056:CDS | 40.0% |
| !! | GAGGACTTCTTAAAGGTGTT+TGG | - | chr1.1:6660946-6660965 | MS.gene33056:CDS | 40.0% |
| !! | GTTTGGATTGTTGGTAGTTC+AGG | - | chr1.1:6660963-6660982 | MS.gene33056:CDS | 40.0% |
| ACAGCTACTCTTTGTCTCAC+TGG | + | chr1.1:6660486-6660505 | None:intergenic | 45.0% | |
| CAACAAGCACCAAGTACAAC+AGG | + | chr1.1:6661167-6661186 | None:intergenic | 45.0% | |
| GGTTCAATCAATGAAGGAGG+TGG | - | chr1.1:6659928-6659947 | MS.gene33056:CDS | 45.0% | |
| TGGTTCACAGAGAAGGCTTT+GGG | - | chr1.1:6660296-6660315 | MS.gene33056:CDS | 45.0% | |
| !! | GATGTTTGTATTGGTTGGCC+TGG | - | chr1.1:6660864-6660883 | MS.gene33056:CDS | 45.0% |
| !! | GGTGGTCTTGTTTGCAGAAA+AGG | - | chr1.1:6661117-6661136 | MS.gene33056:CDS | 45.0% |
| !! | TGATCATCAGGCATTGAACC+AGG | + | chr1.1:6660885-6660904 | None:intergenic | 45.0% |
| CTTTGGGTGAAGGATCGTTC+AGG | - | chr1.1:6660312-6660331 | MS.gene33056:CDS | 50.0% | |
| GTGGTTCACAGAGAAGGCTT+TGG | - | chr1.1:6660295-6660314 | MS.gene33056:CDS | 50.0% | |
| TGAAGGATCGTTCAGGAGCA+TGG | - | chr1.1:6660319-6660338 | MS.gene33056:CDS | 50.0% | |
| !! | ACAGAGAAGGCTTTGGGTGA+AGG | - | chr1.1:6660302-6660321 | MS.gene33056:CDS | 50.0% |
| !! | ATGGTGGTGGTTCACAGAGA+AGG | - | chr1.1:6660289-6660308 | MS.gene33056:CDS | 50.0% |
| ! | AGGATCGTTCAGGAGCATGG+TGG | - | chr1.1:6660322-6660341 | MS.gene33056:CDS | 55.0% |
| ! | GGATCGTTCAGGAGCATGGT+GGG | - | chr1.1:6660323-6660342 | MS.gene33056:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 6659835 | 6661367 | 6659835 | ID=MS.gene33056 |
| chr1.1 | mRNA | 6659835 | 6661367 | 6659835 | ID=MS.gene33056.t1;Parent=MS.gene33056 |
| chr1.1 | exon | 6659835 | 6661367 | 6659835 | ID=MS.gene33056.t1.exon1;Parent=MS.gene33056.t1 |
| chr1.1 | CDS | 6659835 | 6661367 | 6659835 | ID=cds.MS.gene33056.t1;Parent=MS.gene33056.t1 |
| Gene Sequence |
| Protein sequence |
