AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35470.t1 MTR_3g075050 62.676 142 34 2 95 217 279 420 3.98e-51 172
MS.gene35470.t1 MTR_3g075050 62.676 142 34 2 95 217 279 420 1.14e-50 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35470.t1 AT3G48500 70.103 97 29 0 118 214 318 414 3.15e-41 149
MS.gene35470.t1 AT3G48500 75.281 89 22 0 126 214 355 443 7.44e-41 147

Find 72 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAAAAGGTATGTTCTTA+TGG 0.226102 3.4:-73646802 MS.gene35470:CDS
TACATCAGATGATCTATATT+TGG 0.254545 3.4:+73647329 None:intergenic
TCTCTCTAGTGTGCAACAAC+TGG 0.289339 3.4:-73648697 MS.gene35470:CDS
TCTTCCTCTGGCTTGTCTCC+TGG 0.300554 3.4:+73646850 None:intergenic
TAGACATCAATGCTGGTTCT+AGG 0.341048 3.4:-73646762 MS.gene35470:CDS
TCTTCGTCACGGTGAAATAT+TGG 0.368899 3.4:+73647165 None:intergenic
AGCGAGATCCTTATCGCTTC+CGG 0.369751 3.4:-73647379 MS.gene35470:CDS
GTGTCAAACCTGGGCACCTC+TGG 0.373079 3.4:-73648500 MS.gene35470:CDS
TACTAATCCAGATGAATTGC+GGG 0.389911 3.4:-73647142 MS.gene35470:intron
GTGCAAACCCGCAATTCATC+TGG 0.394940 3.4:+73647135 None:intergenic
AACCTGGGCACCTCTGGCCT+CGG 0.398505 3.4:-73648494 MS.gene35470:CDS
TTGAGATTGGGTCTTCAGTT+GGG 0.402503 3.4:+73648550 None:intergenic
TCAATGCTGGTTCTAGGTTA+TGG 0.406358 3.4:-73646756 MS.gene35470:CDS
AACGAAGTTCGATCGGGAAC+CGG 0.411671 3.4:+73647360 None:intergenic
CACTCAGACCAACATATTGA+TGG 0.415849 3.4:+73648520 None:intergenic
CTCTCTAGTGTGCAACAACT+GGG 0.416181 3.4:-73648696 MS.gene35470:CDS
GACCAACATATTGATGGATA+AGG 0.424898 3.4:+73648526 None:intergenic
GAAAATAGAGGTTCTTCCTC+TGG 0.426046 3.4:+73646838 None:intergenic
CTTGAGATTGGGTCTTCAGT+TGG 0.426351 3.4:+73648549 None:intergenic
TGATGGATAAGGCTTGAGAT+TGG 0.429858 3.4:+73648537 None:intergenic
ATCGGGAACCGGAAGCGATA+AGG 0.446047 3.4:+73647371 None:intergenic
TCTGTTGGTATCCCCACATC+AGG 0.453471 3.4:-73648633 MS.gene35470:CDS
TAATCACCCATATGTTGAAA+AGG 0.454207 3.4:-73646815 MS.gene35470:CDS
GATGGATAAGGCTTGAGATT+GGG 0.457371 3.4:+73648538 None:intergenic
GGGGCATTTGTTGACATTGG+TGG 0.468311 3.4:-73649732 MS.gene35470:CDS
ACAACTTTGCATCTCTATCA+AGG 0.473424 3.4:-73649753 MS.gene35470:CDS
CACCGAGGCCAGAGGTGCCC+AGG 0.476768 3.4:+73648492 None:intergenic
CAGTGCCTCTGATGGGTAAG+TGG 0.486786 3.4:+73648665 None:intergenic
TGGGGATACCAACAGAAACT+AGG 0.500316 3.4:+73648640 None:intergenic
CAAGGGGCATTTGTTGACAT+TGG 0.506627 3.4:-73649735 MS.gene35470:CDS
GAATGGGGTGAGCAATGAAC+TGG 0.510610 3.4:+73648599 None:intergenic
TCCACAAAACGAAGTTCGAT+CGG 0.527234 3.4:+73647353 None:intergenic
TATGGGTGATTAGAAAATAG+AGG 0.529683 3.4:+73646826 None:intergenic
GCACTGTCCCTAGTTTCTGT+TGG 0.533473 3.4:-73648648 MS.gene35470:CDS
AATGGACGAATAAAAGAAAG+AGG 0.540258 3.4:+73648462 None:intergenic
CCACAAAACGAAGTTCGATC+GGG 0.542762 3.4:+73647354 None:intergenic
CACCCCATTCCAAAGGGAAG+GGG 0.544994 3.4:-73648586 MS.gene35470:CDS
ATTTGCAGCGTGACTGTGGA+AGG 0.554574 3.4:-73646894 MS.gene35470:intron
CATTGCTCACCCCATTCCAA+AGG 0.555588 3.4:-73648593 MS.gene35470:CDS
ACTAGGGACAGTGCCTCTGA+TGG 0.559846 3.4:+73648657 None:intergenic
AGCCTTATCCATCAATATGT+TGG 0.561390 3.4:-73648528 MS.gene35470:CDS
CTCACCCCATTCCAAAGGGA+AGG 0.565337 3.4:-73648588 MS.gene35470:CDS
CTGGGCACCTCTGGCCTCGG+TGG 0.566066 3.4:-73648491 MS.gene35470:CDS
CAACTTTGCATCTCTATCAA+GGG 0.567918 3.4:-73649752 MS.gene35470:CDS
CCTATTCCTAGAAAAGATCC+AGG 0.570936 3.4:-73646868 MS.gene35470:CDS
ATTGCAGATTTGTGTGGGGA+AGG 0.573789 3.4:-73649778 None:intergenic
ATTGCTCACCCCATTCCAAA+GGG 0.576485 3.4:-73648592 MS.gene35470:CDS
AGCTCAAATTGTATTATACA+AGG 0.577877 3.4:-73648729 MS.gene35470:CDS
AGTGCCTCTGATGGGTAAGT+GGG 0.579621 3.4:+73648666 None:intergenic
CTAGGGACAGTGCCTCTGAT+GGG 0.581088 3.4:+73648658 None:intergenic
TCGTCACGGTGAAATATTGG+TGG 0.584435 3.4:+73647168 None:intergenic
TCACCCCATTCCAAAGGGAA+GGG 0.585532 3.4:-73648587 MS.gene35470:CDS
GGGGATACCAACAGAAACTA+GGG 0.593695 3.4:+73648641 None:intergenic
GGAACAATAGACATCAATGC+TGG 0.598430 3.4:-73646769 MS.gene35470:CDS
TAAAATTTGCAGCGTGACTG+TGG 0.599739 3.4:-73646898 MS.gene35470:intron
ACCCCATTCCAAAGGGAAGG+GGG 0.607518 3.4:-73648585 MS.gene35470:CDS
ATACTAATCCAGATGAATTG+CGG 0.608071 3.4:-73647143 MS.gene35470:CDS
GTTGGTCTGAGTGTCAAACC+TGG 0.610707 3.4:-73648510 MS.gene35470:CDS
TTGATGTCTATTGTTCCTTG+TGG 0.611999 3.4:+73646775 None:intergenic
GCATCAACCACCGAGGCCAG+AGG 0.615182 3.4:+73648484 None:intergenic
CGTCACGGTGAAATATTGGT+GGG 0.618017 3.4:+73647169 None:intergenic
AACTTTGCATCTCTATCAAG+GGG 0.623804 3.4:-73649751 MS.gene35470:CDS
CTGGATTAGTATCTTCGTCA+CGG 0.631090 3.4:+73647154 None:intergenic
TGTTCTTATGGACTTCCACA+AGG 0.649422 3.4:-73646790 MS.gene35470:CDS
AGATCCAGGAGACAAGCCAG+AGG 0.658333 3.4:-73646854 MS.gene35470:CDS
ACATTGGTGGAGTATACGAT+GGG 0.660404 3.4:-73649719 MS.gene35470:intron
TTTCATTGCAGATTTGTGTG+GGG 0.667811 3.4:-73649782 None:intergenic
AGCTCCCACTTACCCATCAG+AGG 0.673323 3.4:-73648670 MS.gene35470:CDS
TCTCTAGTGTGCAACAACTG+GGG 0.695167 3.4:-73648695 MS.gene35470:CDS
GACATTGGTGGAGTATACGA+TGG 0.698114 3.4:-73649720 MS.gene35470:CDS
TTGGTCTGAGTGTCAAACCT+GGG 0.699073 3.4:-73648509 MS.gene35470:CDS
GAAAGAGGCATCAACCACCG+AGG 0.722243 3.4:+73648477 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAAAAAAAACTACAATT+TGG + chr3.4:73647703-73647722 None:intergenic 15.0%
!! GTTGCAATTTATATAATATT+TGG - chr3.4:73648341-73648360 MS.gene35470:intron 15.0%
!!! CTTTTTTGCATTTTTTTTAT+AGG - chr3.4:73648975-73648994 MS.gene35470:intron 15.0%
!!! TTTCAAAGTATTTATGTATT+TGG - chr3.4:73648498-73648517 MS.gene35470:CDS 15.0%
!! AAGGATAAAGAAAAATTTCA+AGG + chr3.4:73648529-73648548 None:intergenic 20.0%
!! AATGTTTAATCAATATCATG+TGG - chr3.4:73646985-73647004 MS.gene35470:intron 20.0%
!! ACTGTATTATCAAGTATATA+AGG + chr3.4:73647650-73647669 None:intergenic 20.0%
!! ATAAAGAAAAATTTCAAGGA+GGG + chr3.4:73648525-73648544 None:intergenic 20.0%
!!! ATTTTTTTTATAGGCAATGT+AGG - chr3.4:73648984-73649003 MS.gene35470:intron 20.0%
!!! TTATGTTCATGTTTTGAAAT+AGG - chr3.4:73647766-73647785 MS.gene35470:intron 20.0%
!!! TTTGTTAGAAAAAAAAGTAC+TGG - chr3.4:73647154-73647173 MS.gene35470:CDS 20.0%
! AAAAAAAACTACAATTTGGC+AGG + chr3.4:73647699-73647718 None:intergenic 25.0%
! AAAAATCTGCAAAAAGATTG+AGG + chr3.4:73649429-73649448 None:intergenic 25.0%
! AACCAATCATTGTTCTTTAT+AGG + chr3.4:73647521-73647540 None:intergenic 25.0%
! AACGTAAATTTAAGAAGTGA+GGG + chr3.4:73648147-73648166 None:intergenic 25.0%
! AGCTCAAATTGTATTATACA+AGG - chr3.4:73647795-73647814 MS.gene35470:intron 25.0%
! AGTTCAATTATATCCTTGTT+TGG - chr3.4:73649050-73649069 MS.gene35470:intron 25.0%
! ATGCAAAAAAGCTTAAAGTA+AGG + chr3.4:73648966-73648985 None:intergenic 25.0%
! CTAACAAAGTTACAAATTTG+AGG + chr3.4:73648566-73648585 None:intergenic 25.0%
! CTTGTTAAATCTTTAGACTT+TGG - chr3.4:73647122-73647141 MS.gene35470:intron 25.0%
! GATAAAGAAAAATTTCAAGG+AGG + chr3.4:73648526-73648545 None:intergenic 25.0%
! TACATCAGATGATCTATATT+TGG + chr3.4:73649198-73649217 None:intergenic 25.0%
! TGAGGAAGATCTATAAAAAA+AGG + chr3.4:73648548-73648567 None:intergenic 25.0%
! TTCCTATAAAGAACAATGAT+TGG - chr3.4:73647516-73647535 MS.gene35470:intron 25.0%
!! AACATACCTTTTCAACATAT+GGG + chr3.4:73649718-73649737 None:intergenic 25.0%
!! CATTCACATTTTTACTTTGT+AGG - chr3.4:73649119-73649138 MS.gene35470:intron 25.0%
!! GCAATTTAAAATCTACTTGT+GGG - chr3.4:73648383-73648402 MS.gene35470:intron 25.0%
!! TATACTTGATAATACAGTGA+TGG - chr3.4:73647652-73647671 MS.gene35470:intron 25.0%
!! TGAATAGTTTTCAGTAAACT+GGG + chr3.4:73647238-73647257 None:intergenic 25.0%
!! TGCAATTTAAAATCTACTTG+TGG - chr3.4:73648382-73648401 MS.gene35470:intron 25.0%
!! TTCTTTTATTCGTCCATTTT+TGG - chr3.4:73648067-73648086 MS.gene35470:intron 25.0%
!! TTGAATAGTTTTCAGTAAAC+TGG + chr3.4:73647239-73647258 None:intergenic 25.0%
!!! GTTTTTTTTAACTCATCGAT+AGG - chr3.4:73647710-73647729 MS.gene35470:intron 25.0%
!!! TAAAGAACAATGATTGGTTT+TGG - chr3.4:73647522-73647541 MS.gene35470:intron 25.0%
AAAAAGATTGAGGTGGTTTA+GGG + chr3.4:73649419-73649438 None:intergenic 30.0%
AATGGACGAATAAAAGAAAG+AGG + chr3.4:73648065-73648084 None:intergenic 30.0%
ACCCAATACAGAAAAAGTTA+AGG + chr3.4:73646867-73646886 None:intergenic 30.0%
ACGTAAATTTAAGAAGTGAG+GGG + chr3.4:73648146-73648165 None:intergenic 30.0%
ACTCGTTAAAAACAAAAGCA+TGG + chr3.4:73649517-73649536 None:intergenic 30.0%
ACTTAGCAAGAATATCATTG+TGG + chr3.4:73646941-73646960 None:intergenic 30.0%
AGAAAATATGCAATAACCCA+TGG + chr3.4:73647327-73647346 None:intergenic 30.0%
ATACTAATCCAGATGAATTG+CGG - chr3.4:73649381-73649400 MS.gene35470:intron 30.0%
ATCATGTGGTGCAATAAATT+GGG - chr3.4:73646999-73647018 MS.gene35470:intron 30.0%
CATTACAAGAAAACCACTTA+TGG + chr3.4:73649076-73649095 None:intergenic 30.0%
CCCAATACAGAAAAAGTTAA+GGG + chr3.4:73646866-73646885 None:intergenic 30.0%
CTAAAGATTTAACAAGTCTC+AGG + chr3.4:73647118-73647137 None:intergenic 30.0%
GAACGTAAATTTAAGAAGTG+AGG + chr3.4:73648148-73648167 None:intergenic 30.0%
GGTTAAATGGTGAATTATAG+TGG + chr3.4:73648902-73648921 None:intergenic 30.0%
TAAGTATTAAGTGACAAGTG+TGG + chr3.4:73647627-73647646 None:intergenic 30.0%
TAATCACCCATATGTTGAAA+AGG - chr3.4:73649709-73649728 MS.gene35470:intron 30.0%
TATCATGTGGTGCAATAAAT+TGG - chr3.4:73646998-73647017 MS.gene35470:intron 30.0%
TATGGGTGATTAGAAAATAG+AGG + chr3.4:73649701-73649720 None:intergenic 30.0%
TGTTATCACGAGTAACTTAT+AGG - chr3.4:73647385-73647404 MS.gene35470:CDS 30.0%
TTAAGGGAACACTTAAAAGA+TGG + chr3.4:73646850-73646869 None:intergenic 30.0%
! ATAGTGGAAAGTTGAAACAA+GGG + chr3.4:73648886-73648905 None:intergenic 30.0%
! CTTTTATGCAAGTTTTCTTC+TGG - chr3.4:73647460-73647479 MS.gene35470:intron 30.0%
! GAACATACCTTTTCAACATA+TGG + chr3.4:73649719-73649738 None:intergenic 30.0%
! GTTGAAAAGGTATGTTCTTA+TGG - chr3.4:73649722-73649741 MS.gene35470:CDS 30.0%
! TATAGTGGAAAGTTGAAACA+AGG + chr3.4:73648887-73648906 None:intergenic 30.0%
! TGTTCATTTCCTCATTGTTT+TGG - chr3.4:73646886-73646905 MS.gene35470:CDS 30.0%
! TTTTTATAGGCAATGTAGGT+AGG - chr3.4:73648988-73649007 MS.gene35470:intron 30.0%
!! CCCTTAACTTTTTCTGTATT+GGG - chr3.4:73646863-73646882 MS.gene35470:CDS 30.0%
!! GTTACATACTTGACTTGTAT+TGG - chr3.4:73648465-73648484 MS.gene35470:CDS 30.0%
!! TCCCTTAACTTTTTCTGTAT+TGG - chr3.4:73646862-73646881 MS.gene35470:CDS 30.0%
!!! TCCATTTTTGGTACTAAGAA+AGG - chr3.4:73648079-73648098 MS.gene35470:intron 30.0%
AAAACAATGTCTCCTAGTCA+AGG + chr3.4:73647290-73647309 None:intergenic 35.0%
AACACTTAAAAGATGGACAG+AGG + chr3.4:73646843-73646862 None:intergenic 35.0%
AACTAGTTGTAGTCTGTCAT+TGG + chr3.4:73648300-73648319 None:intergenic 35.0%
AACTTTGCATCTCTATCAAG+GGG - chr3.4:73646773-73646792 MS.gene35470:CDS 35.0%
AATCTGCAAAAAGATTGAGG+TGG + chr3.4:73649426-73649445 None:intergenic 35.0%
AATTTGGCAGGTAACAGTAT+GGG + chr3.4:73647687-73647706 None:intergenic 35.0%
ACAACTTTGCATCTCTATCA+AGG - chr3.4:73646771-73646790 MS.gene35470:CDS 35.0%
ACACTTAAAAGATGGACAGA+GGG + chr3.4:73646842-73646861 None:intergenic 35.0%
ACTAGCAACTACAAAGTGAA+AGG + chr3.4:73648236-73648255 None:intergenic 35.0%
AGTATGTAACTTCAACTCAC+TGG + chr3.4:73648455-73648474 None:intergenic 35.0%
ATAATGAACCCCCTCAAATT+TGG - chr3.4:73648186-73648205 MS.gene35470:intron 35.0%
ATTCGCCATCACATAAAAGT+GGG - chr3.4:73647545-73647564 MS.gene35470:intron 35.0%
CAAAAAGATTGAGGTGGTTT+AGG + chr3.4:73649420-73649439 None:intergenic 35.0%
CAACCAATGACATGGTTAAA+TGG + chr3.4:73648915-73648934 None:intergenic 35.0%
CAACTTTGCATCTCTATCAA+GGG - chr3.4:73646772-73646791 MS.gene35470:CDS 35.0%
CACCGTAATTTCAACAATGA+CGG + chr3.4:73647576-73647595 None:intergenic 35.0%
CGTAAATTTAAGAAGTGAGG+GGG + chr3.4:73648145-73648164 None:intergenic 35.0%
GACCGTCATTGTTGAAATTA+CGG - chr3.4:73647571-73647590 MS.gene35470:intron 35.0%
GCCTTTCTTAGTACCAAAAA+TGG + chr3.4:73648083-73648102 None:intergenic 35.0%
TACTAATCCAGATGAATTGC+GGG - chr3.4:73649382-73649401 MS.gene35470:intron 35.0%
TCACCATTTAACCATGTCAT+TGG - chr3.4:73648909-73648928 MS.gene35470:intron 35.0%
TCTTTCTTTGATCCTTGACT+AGG - chr3.4:73647275-73647294 MS.gene35470:intron 35.0%
TGAGCAATGAACTGGAAAAA+TGG + chr3.4:73647920-73647939 None:intergenic 35.0%
TTCTCTTTATATGCTGCCAT+GGG - chr3.4:73647308-73647327 MS.gene35470:intron 35.0%
TTGATGTCTATTGTTCCTTG+TGG + chr3.4:73649752-73649771 None:intergenic 35.0%
TTTCTCTTTATATGCTGCCA+TGG - chr3.4:73647307-73647326 MS.gene35470:intron 35.0%
! ACTGTCTCTTTTGTATCATG+TGG - chr3.4:73647209-73647228 MS.gene35470:intron 35.0%
! AGCCTTATCCATCAATATGT+TGG - chr3.4:73647996-73648015 MS.gene35470:intron 35.0%
! GACCAACATATTGATGGATA+AGG + chr3.4:73648001-73648020 None:intergenic 35.0%
! TTTTGGTACTAAGAAAGGCA+GGG - chr3.4:73648084-73648103 MS.gene35470:intron 35.0%
!! TATGAAGCGCTGTTTATAGA+AGG + chr3.4:73649245-73649264 None:intergenic 35.0%
!! TCATACCCACTTTTATGTGA+TGG + chr3.4:73647553-73647572 None:intergenic 35.0%
!! TTTTTGGTACTAAGAAAGGC+AGG - chr3.4:73648083-73648102 MS.gene35470:intron 35.0%
!!! CTTGACTTGTATTGGTTTTG+AGG - chr3.4:73648473-73648492 MS.gene35470:CDS 35.0%
!!! TACTTGTTTTGTTTCTGCCA+TGG + chr3.4:73647081-73647100 None:intergenic 35.0%
AAAAATGGACACCTGATGTG+GGG + chr3.4:73647905-73647924 None:intergenic 40.0%
AAACCACTTATGGCCAAACA+AGG + chr3.4:73649066-73649085 None:intergenic 40.0%
ACAATCTTCATGCATTAGCG+AGG + chr3.4:73648711-73648730 None:intergenic 40.0%
ACATTGGTGGAGTATACGAT+GGG - chr3.4:73646805-73646824 MS.gene35470:CDS 40.0%
CAACTACAAAGTGAAAGGAG+AGG + chr3.4:73648231-73648250 None:intergenic 40.0%
CAATCTTCATGCATTAGCGA+GGG + chr3.4:73648710-73648729 None:intergenic 40.0%
CAATTTGGCAGGTAACAGTA+TGG + chr3.4:73647688-73647707 None:intergenic 40.0%
CACTCAGACCAACATATTGA+TGG + chr3.4:73648007-73648026 None:intergenic 40.0%
CATCTACTGTAACGTGTTCT+AGG - chr3.4:73647489-73647508 MS.gene35470:intron 40.0%
CCTATTCCTAGAAAAGATCC+AGG - chr3.4:73649656-73649675 MS.gene35470:intron 40.0%
CTCATCGATAGGAAACTAGT+TGG - chr3.4:73647721-73647740 MS.gene35470:intron 40.0%
CTTCATTACATCCAAAGCCA+TGG - chr3.4:73647061-73647080 MS.gene35470:intron 40.0%
GAAAAATGGACACCTGATGT+GGG + chr3.4:73647906-73647925 None:intergenic 40.0%
GAAAATAGAGGTTCTTCCTC+TGG + chr3.4:73649689-73649708 None:intergenic 40.0%
GAACCAGGTTAGGTTATGTA+GGG - chr3.4:73648410-73648429 MS.gene35470:intron 40.0%
GATGGATAAGGCTTGAGATT+GGG + chr3.4:73647989-73648008 None:intergenic 40.0%
GATTCGCCATCACATAAAAG+TGG - chr3.4:73647544-73647563 MS.gene35470:intron 40.0%
GGAACAATAGACATCAATGC+TGG - chr3.4:73649755-73649774 MS.gene35470:CDS 40.0%
GGTGCAATGTCCAAATTTGA+GGG + chr3.4:73648199-73648218 None:intergenic 40.0%
GTGCAATGTCCAAATTTGAG+GGG + chr3.4:73648198-73648217 None:intergenic 40.0%
GTTTACAGACTAGAGCTACA+GGG - chr3.4:73647179-73647198 MS.gene35470:CDS 40.0%
TAAAAGATGGACAGAGGGAT+TGG + chr3.4:73646837-73646856 None:intergenic 40.0%
TAAAATTTGCAGCGTGACTG+TGG - chr3.4:73649626-73649645 MS.gene35470:intron 40.0%
TAACTTCAACTCACTGGCAA+TGG + chr3.4:73648449-73648468 None:intergenic 40.0%
TCAAGACATATCTGACAGCA+TGG + chr3.4:73649558-73649577 None:intergenic 40.0%
TCCACAAAACGAAGTTCGAT+CGG + chr3.4:73649174-73649193 None:intergenic 40.0%
TCTTCGTCACGGTGAAATAT+TGG + chr3.4:73649362-73649381 None:intergenic 40.0%
TGCAATGTCCAAATTTGAGG+GGG + chr3.4:73648197-73648216 None:intergenic 40.0%
TGGTGCAATGTCCAAATTTG+AGG + chr3.4:73648200-73648219 None:intergenic 40.0%
TGTTCTTATGGACTTCCACA+AGG - chr3.4:73649734-73649753 MS.gene35470:CDS 40.0%
TGTTTACAGACTAGAGCTAC+AGG - chr3.4:73647178-73647197 MS.gene35470:CDS 40.0%
TTGAGATTGGGTCTTCAGTT+GGG + chr3.4:73647977-73647996 None:intergenic 40.0%
TTTCCCTACATAACCTAACC+TGG + chr3.4:73648416-73648435 None:intergenic 40.0%
TTTGGTACTAAGAAAGGCAG+GGG - chr3.4:73648085-73648104 MS.gene35470:intron 40.0%
! CAGGTAACAGTATGGGTTAA+AGG + chr3.4:73647680-73647699 None:intergenic 40.0%
! GTAATGAAGCATTTCAGTGC+TGG + chr3.4:73647050-73647069 None:intergenic 40.0%
! TACTGTAACGTGTTCTAGGT+GGG - chr3.4:73647493-73647512 MS.gene35470:intron 40.0%
! TATCCTTGTTTGGCCATAAG+TGG - chr3.4:73649060-73649079 MS.gene35470:intron 40.0%
! TGATGGATAAGGCTTGAGAT+TGG + chr3.4:73647990-73648009 None:intergenic 40.0%
! TTGTCTCCTGGATCTTTTCT+AGG + chr3.4:73649665-73649684 None:intergenic 40.0%
!! ATAACAGTATGAAGTGCTGC+TGG + chr3.4:73647371-73647390 None:intergenic 40.0%
!! CCTGGATCTTTTCTAGGAAT+AGG + chr3.4:73649659-73649678 None:intergenic 40.0%
!! CTGGATTAGTATCTTCGTCA+CGG + chr3.4:73649373-73649392 None:intergenic 40.0%
!! GGATCTTTTCTAGGAATAGG+AGG + chr3.4:73649656-73649675 None:intergenic 40.0%
!! TAGACATCAATGCTGGTTCT+AGG - chr3.4:73649762-73649781 MS.gene35470:CDS 40.0%
!! TCAATGCTGGTTCTAGGTTA+TGG - chr3.4:73649768-73649787 MS.gene35470:CDS 40.0%
!!! TTCCTCATTGTTTTGGATGC+TGG - chr3.4:73646893-73646912 MS.gene35470:intron 40.0%
!!! TTTTGTTTCTGCCATGGCTT+TGG + chr3.4:73647075-73647094 None:intergenic 40.0%
AAGGGTAGACCTTTCTTCAG+TGG + chr3.4:73648868-73648887 None:intergenic 45.0%
AGTCTCAGGTGTGTTTCTCT+AGG + chr3.4:73647104-73647123 None:intergenic 45.0%
ATTGCTCACCCCATTCCAAA+GGG - chr3.4:73647932-73647951 MS.gene35470:intron 45.0%
CAATGTAGGTAGGACACACA+AGG - chr3.4:73648998-73649017 MS.gene35470:intron 45.0%
CCACAAAACGAAGTTCGATC+GGG + chr3.4:73649173-73649192 None:intergenic 45.0%
CGAACCAGGTTAGGTTATGT+AGG - chr3.4:73648409-73648428 MS.gene35470:intron 45.0%
CGTCACGGTGAAATATTGGT+GGG + chr3.4:73649358-73649377 None:intergenic 45.0%
CTCCAGCATCCAAAACAATG+AGG + chr3.4:73646898-73646917 None:intergenic 45.0%
CTCTCTAGTGTGCAACAACT+GGG - chr3.4:73647828-73647847 MS.gene35470:intron 45.0%
CTTGAGATTGGGTCTTCAGT+TGG + chr3.4:73647978-73647997 None:intergenic 45.0%
GACATTGGTGGAGTATACGA+TGG - chr3.4:73646804-73646823 MS.gene35470:CDS 45.0%
GATTGAGGTGGTTTAGGGAA+AGG + chr3.4:73649414-73649433 None:intergenic 45.0%
GGAAAAATGGACACCTGATG+TGG + chr3.4:73647907-73647926 None:intergenic 45.0%
GGGGATACCAACAGAAACTA+GGG + chr3.4:73647886-73647905 None:intergenic 45.0%
GTAGTTGCTAGTTAGTACGC+TGG - chr3.4:73648244-73648263 MS.gene35470:intron 45.0%
GTCACATGCAACCAATGACA+TGG + chr3.4:73648923-73648942 None:intergenic 45.0%
TCGTCACGGTGAAATATTGG+TGG + chr3.4:73649359-73649378 None:intergenic 45.0%
TCTCTAGTGTGCAACAACTG+GGG - chr3.4:73647829-73647848 MS.gene35470:intron 45.0%
TCTCTCTAGTGTGCAACAAC+TGG - chr3.4:73647827-73647846 MS.gene35470:intron 45.0%
TGGGGATACCAACAGAAACT+AGG + chr3.4:73647887-73647906 None:intergenic 45.0%
TTGGTCTGAGTGTCAAACCT+GGG - chr3.4:73648015-73648034 MS.gene35470:intron 45.0%
! CTACTGTAACGTGTTCTAGG+TGG - chr3.4:73647492-73647511 MS.gene35470:intron 45.0%
!! CAAGGGGCATTTGTTGACAT+TGG - chr3.4:73646789-73646808 MS.gene35470:CDS 45.0%
AACGAAGTTCGATCGGGAAC+CGG + chr3.4:73649167-73649186 None:intergenic 50.0%
ACATATCACCCCCTTCCCTT+TGG + chr3.4:73647950-73647969 None:intergenic 50.0%
AGCGAGATCCTTATCGCTTC+CGG - chr3.4:73649145-73649164 MS.gene35470:intron 50.0%
AGTTTGAACCCCCTGATTCC+AGG - chr3.4:73648831-73648850 MS.gene35470:intron 50.0%
ATTTGCAGCGTGACTGTGGA+AGG - chr3.4:73649630-73649649 MS.gene35470:intron 50.0%
CATTGCTCACCCCATTCCAA+AGG - chr3.4:73647931-73647950 MS.gene35470:intron 50.0%
GAATGGGGTGAGCAATGAAC+TGG + chr3.4:73647928-73647947 None:intergenic 50.0%
GCACTGTCCCTAGTTTCTGT+TGG - chr3.4:73647876-73647895 MS.gene35470:intron 50.0%
GTGCAAACCCGCAATTCATC+TGG + chr3.4:73649392-73649411 None:intergenic 50.0%
TCACCCCATTCCAAAGGGAA+GGG - chr3.4:73647937-73647956 MS.gene35470:intron 50.0%
TCTGTTGGTATCCCCACATC+AGG - chr3.4:73647891-73647910 MS.gene35470:intron 50.0%
! AGTGCCTCTGATGGGTAAGT+GGG + chr3.4:73647861-73647880 None:intergenic 50.0%
! CCCGATCGAACTTCGTTTTG+TGG - chr3.4:73649170-73649189 MS.gene35470:intron 50.0%
! GGGGCATTTGTTGACATTGG+TGG - chr3.4:73646792-73646811 MS.gene35470:CDS 50.0%
! GTTGGTCTGAGTGTCAAACC+TGG - chr3.4:73648014-73648033 MS.gene35470:intron 50.0%
! TGAAAGGAGAGGTGCAAGTG+TGG + chr3.4:73648220-73648239 None:intergenic 50.0%
ACCCCATTCCAAAGGGAAGG+GGG - chr3.4:73647939-73647958 MS.gene35470:intron 55.0%
ACTAGGGACAGTGCCTCTGA+TGG + chr3.4:73647870-73647889 None:intergenic 55.0%
AGATCCAGGAGACAAGCCAG+AGG - chr3.4:73649670-73649689 MS.gene35470:intron 55.0%
AGCTCCCACTTACCCATCAG+AGG - chr3.4:73647854-73647873 MS.gene35470:intron 55.0%
ATCGGGAACCGGAAGCGATA+AGG + chr3.4:73649156-73649175 None:intergenic 55.0%
CACCCCATTCCAAAGGGAAG+GGG - chr3.4:73647938-73647957 MS.gene35470:intron 55.0%
CTACTTGTGGGAGTCGAACC+AGG - chr3.4:73648395-73648414 MS.gene35470:intron 55.0%
CTAGGGACAGTGCCTCTGAT+GGG + chr3.4:73647869-73647888 None:intergenic 55.0%
CTCACCCCATTCCAAAGGGA+AGG - chr3.4:73647936-73647955 MS.gene35470:intron 55.0%
CTGGCTACGCCACTGAAGAA+AGG - chr3.4:73648856-73648875 MS.gene35470:intron 55.0%
CTTTCTTCAGTGGCGTAGCC+AGG + chr3.4:73648858-73648877 None:intergenic 55.0%
GGTACTAAGAAAGGCAGGGG+CGG - chr3.4:73648088-73648107 MS.gene35470:intron 55.0%
GTAGCCAGGACCTGGAATCA+GGG + chr3.4:73648844-73648863 None:intergenic 55.0%
TAGCCAGGACCTGGAATCAG+GGG + chr3.4:73648843-73648862 None:intergenic 55.0%
TGTGGGAGTCGAACCAGGTT+AGG - chr3.4:73648400-73648419 MS.gene35470:intron 55.0%
! CAGTGCCTCTGATGGGTAAG+TGG + chr3.4:73647862-73647881 None:intergenic 55.0%
! TCACCCCCTTCCCTTTGGAA+TGG + chr3.4:73647945-73647964 None:intergenic 55.0%
! TCTTCCTCTGGCTTGTCTCC+TGG + chr3.4:73649677-73649696 None:intergenic 55.0%
!! ACCCCCTTCCCTTTGGAATG+GGG + chr3.4:73647943-73647962 None:intergenic 55.0%
!! CACCCCCTTCCCTTTGGAAT+GGG + chr3.4:73647944-73647963 None:intergenic 55.0%
!! GAAAGAGGCATCAACCACCG+AGG + chr3.4:73648050-73648069 None:intergenic 55.0%
AACCCCCTGATTCCAGGTCC+TGG - chr3.4:73648837-73648856 MS.gene35470:intron 60.0%
AGCCAGGACCTGGAATCAGG+GGG + chr3.4:73648842-73648861 None:intergenic 60.0%
CGTAGCCAGGACCTGGAATC+AGG + chr3.4:73648845-73648864 None:intergenic 60.0%
GAACACCCTGACCCCTACGT+GGG + chr3.4:73648115-73648134 None:intergenic 60.0%
GTGTCAAACCTGGGCACCTC+TGG - chr3.4:73648024-73648043 MS.gene35470:intron 60.0%
TGAACACCCTGACCCCTACG+TGG + chr3.4:73648116-73648135 None:intergenic 60.0%
AACCTGGGCACCTCTGGCCT+CGG - chr3.4:73648030-73648049 MS.gene35470:intron 65.0%
GCATCAACCACCGAGGCCAG+AGG + chr3.4:73648043-73648062 None:intergenic 65.0%
TCAGTGGCGTAGCCAGGACC+TGG + chr3.4:73648852-73648871 None:intergenic 65.0%
GCGGACCCACGTAGGGGTCA+GGG - chr3.4:73648107-73648126 MS.gene35470:intron 70.0%
AGGCAGGGGCGGACCCACGT+AGG - chr3.4:73648099-73648118 MS.gene35470:intron 75.0%
CTGGGCACCTCTGGCCTCGG+TGG - chr3.4:73648033-73648052 MS.gene35470:intron 75.0%
GCAGGGGCGGACCCACGTAG+GGG - chr3.4:73648101-73648120 MS.gene35470:intron 75.0%
GGCAGGGGCGGACCCACGTA+GGG - chr3.4:73648100-73648119 MS.gene35470:intron 75.0%
GGCGGACCCACGTAGGGGTC+AGG - chr3.4:73648106-73648125 MS.gene35470:intron 75.0%
!! CACCGAGGCCAGAGGTGCCC+AGG + chr3.4:73648035-73648054 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 73646753 73649793 73646753 ID=MS.gene35470
chr3.4 mRNA 73646753 73649793 73646753 ID=MS.gene35470.t1;Parent=MS.gene35470
chr3.4 exon 73649720 73649793 73649720 ID=MS.gene35470.t1.exon1;Parent=MS.gene35470.t1
chr3.4 CDS 73649720 73649793 73649720 ID=cds.MS.gene35470.t1;Parent=MS.gene35470.t1
chr3.4 exon 73648458 73648758 73648458 ID=MS.gene35470.t1.exon2;Parent=MS.gene35470.t1
chr3.4 CDS 73648458 73648758 73648458 ID=cds.MS.gene35470.t1;Parent=MS.gene35470.t1
chr3.4 exon 73647332 73647405 73647332 ID=MS.gene35470.t1.exon3;Parent=MS.gene35470.t1
chr3.4 CDS 73647332 73647405 73647332 ID=cds.MS.gene35470.t1;Parent=MS.gene35470.t1
chr3.4 exon 73647143 73647209 73647143 ID=MS.gene35470.t1.exon4;Parent=MS.gene35470.t1
chr3.4 CDS 73647143 73647209 73647143 ID=cds.MS.gene35470.t1;Parent=MS.gene35470.t1
chr3.4 exon 73646753 73646908 73646753 ID=MS.gene35470.t1.exon5;Parent=MS.gene35470.t1
chr3.4 CDS 73646753 73646908 73646753 ID=cds.MS.gene35470.t1;Parent=MS.gene35470.t1
Gene Sequence

>MS.gene35470

ATTTGTGTGGGGAAGGTGACAACTTTGCATCTCTATCAAGGGGCATTTGTTGACATTGGTGGAGTATACGATGGGTACATACCAATCCCTCTGTCCATCTTTTAAGTGTTCCCTTAACTTTTTCTGTATTGGGTGTTCATTTCCTCATTGTTTTGGATGCTGGAGTAAGAAATATTGAGTTGCTTCCACAATGATATTCTTGCTAAGTTGATAACTATATCTACAACTTTAGAATGTTTAATCAATATCATGTGGTGCAATAAATTGGGAGAAGCATCTTCACAAGCATTTGTACCAGCACTGAAATGCTTCATTACATCCAAAGCCATGGCAGAAACAAAACAAGTACCTAGAGAAACACACCTGAGACTTGTTAAATCTTTAGACTTTGGATGCATTTTTTTGTTAGAAAAAAAAGTACTGGTTGTTTACAGACTAGAGCTACAGGGAAATCATACTGTCTCTTTTGTATCATGTGGTAGCCCAGTTTACTGAAAACTATTCAACACTGAGATTGTTTTCTCTTTCTTTGATCCTTGACTAGGAGACATTGTTTTCTCTTTATATGCTGCCATGGGTTATTGCATATTTTCTTTTGTTTATTGCTGCTGTGTACCAGCAGCACTTCATACTGTTATCACGAGTAACTTATAGGCTTTACTTCTGTAGCATTGTTATCTTGTTCAGTGTCACTGTTTTAGCTTTTACTTTTATGCAAGTTTTCTTCTGGAATATTCATCTACTGTAACGTGTTCTAGGTGGGTTCCTATAAAGAACAATGATTGGTTTTGGATTCGCCATCACATAAAAGTGGGTATGACCGTCATTGTTGAAATTACGGTGAGTATTTCAGTCACTAGTTGAGAATATTCCACACTTGTCACTTAATACTTACCTTATATACTTGATAATACAGTGATGGTGCCTTTAACCCATACTGTTACCTGCCAAATTGTAGTTTTTTTTAACTCATCGATAGGAAACTAGTTGGTGCTGCATTTTTCTTCACGTTGTTATGTTCATGTTTTGAAATAGGAACTCTAGCTCAAATTGTATTATACAAGGTGAATTTTCTCTCTCTAGTGTGCAACAACTGGGGCAAGCTCCCACTTACCCATCAGAGGCACTGTCCCTAGTTTCTGTTGGTATCCCCACATCAGGTGTCCATTTTTCCAGTTCATTGCTCACCCCATTCCAAAGGGAAGGGGGTGATATGTTTAACCCAACTGAAGACCCAATCTCAAGCCTTATCCATCAATATGTTGGTCTGAGTGTCAAACCTGGGCACCTCTGGCCTCGGTGGTTGATGCCTCTTTCTTTTATTCGTCCATTTTTGGTACTAAGAAAGGCAGGGGCGGACCCACGTAGGGGTCAGGGTGTTCAAGTGAACCCCCTCACTTCTTAAATTTACGTTCAAAATTTTATGTTTTTTCATAATGAACCCCCTCAAATTTGGACATTGCACCACACTTGCACCTCTCCTTTCACTTTGTAGTTGCTAGTTAGTACGCTGGCTCAGATTAAGCTCACTGACATTGCAGTGTCCAATGACAGACTACAACTAGTTATAATATTAATTATTTCATAAGTTGCAATTTATATAATATTTGGAGTAATTAATTCATAAGTTGCAATTTAAAATCTACTTGTGGGAGTCGAACCAGGTTAGGTTATGTAGGGAAATTAAACAAAACCATTGCCAGTGAGTTGAAGTTACATACTTGACTTGTATTGGTTTTGAGGCATTTCAAAGTATTTATGTATTTGGACCCTCCTTGAAATTTTTCTTTATCCTTTTTTTATAGATCTTCCTCAAATTTGTAACTTTGTTAGTAATAATTCTTTTATCAACATAAAATATGTTACATATTTTTATTGTAACAAATAATAAAAATAAATAAATTCTCTCTCATGAAGTGTAAATTGACAAAGTTTATGATTTTAAAACTTACGACCCTCGCTAATGCATGAAGATTGTGAAGAGTAAATTGCGCAGAGAACAATTGTCAAATACGTATGCAATTTTTTTAGTACATTGTAATATATATTATTATAATTATAATTAATTAAAGTTTGAAAGTTTGAACCCCCTGATTCCAGGTCCTGGCTACGCCACTGAAGAAAGGTCTACCCTTGTTTCAACTTTCCACTATAATTCACCATTTAACCATGTCATTGGTTGCATGTGACTGAAATTGTTTCTTGTGTATCCTTACTTTAAGCTTTTTTGCATTTTTTTTATAGGCAATGTAGGTAGGACACACAAGGCTATATTACTGATTCTATAATATATACATAGTTCAATTATATCCTTGTTTGGCCATAAGTGGTTTTCTTGTAATGAATGTTTACTCTACTTATTAACTCATTCACATTTTTACTTTGTAGGCAAAGCGAGATCCTTATCGCTTCCGGTTCCCGATCGAACTTCGTTTTGTGGATCCAAATATAGATCATCTGATGTACGATTATGTGTTTGTGATGTTCAACCTTCTATAAACAGCGCTTCATAATACATATTTCTAACTTTATTAATTTGATTACAATTGATAATTTTAACATATTTTTCATTTTGATACTTCAGCTTTAACAGATTTGACTTCCCACCAATATTTCACCGTGACGAAGATACTAATCCAGATGAATTGCGGGTTTGCACCTTTCCCTAAACCACCTCAATCTTTTTGCAGATTTTTTTTTTTTCTTTTTGCATTGATCAAACTCTGAAGCTCTTTGTACTGTAACTTTGCTGTGATGTAATCCATGCTTTTGTTTTTAACGAGTAAAAGTTCAAATGTATATCCATGCTGTCAGATATGTCTTGATATCAAAGTTATGCATTATTATGATCATATTTTTTCTAATTGATATTTTAAAATTTGCAGCGTGACTGTGGAAGGCCTCCTATTCCTAGAAAAGATCCAGGAGACAAGCCAGAGGAAGAACCTCTATTTTCTAATCACCCATATGTTGAAAAGGTATGTTCTTATGGACTTCCACAAGGAACAATAGACATCAATGCTGGTTCTAGGTTATGGTAA

Protein sequence

>MS.gene35470.t1

ICVGKVTTLHLYQGAFVDIGGVYDGNSSSNCIIQGEFSLSSVQQLGQAPTYPSEALSLVSVGIPTSGVHFSSSLLTPFQREGGDMFNPTEDPISSLIHQYVGLSVKPGHLWPRWLMPLSFIRPFLAKRDPYRFRFPIELRFVDPNIDHLIFNRFDFPPIFHRDEDTNPDELRRDCGRPPIPRKDPGDKPEEEPLFSNHPYVEKVCSYGLPQGTIDINAGSRLW