Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36046.t1 | XP_003628551.1 | 97.7 | 129 | 3 | 0 | 1 | 129 | 1 | 129 | 1.60E-68 | 268.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36046.t1 | Q9FN32 | 69.5 | 128 | 39 | 0 | 1 | 128 | 1 | 128 | 1.8e-47 | 189.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36046.t1 | G7LDR9 | 97.7 | 129 | 3 | 0 | 1 | 129 | 1 | 129 | 1.2e-68 | 268.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene36046 | -0.820922 | 5.31E-53 | -1.69E-46 |
| MS.gene049404 | MS.gene36046 | 0.810844 | 9.42E-51 | -1.69E-46 |
| MS.gene049666 | MS.gene36046 | 0.813475 | 2.51E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene36046 | 0.803582 | 3.25E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene36046 | 0.804859 | 1.76E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene36046 | 0.824414 | 8.18E-54 | -1.69E-46 |
| MS.gene050905 | MS.gene36046 | -0.820064 | 8.35E-53 | -1.69E-46 |
| MS.gene052239 | MS.gene36046 | -0.814404 | 1.57E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene36046 | 0.810388 | 1.18E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene36046 | 0.801261 | 9.79E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene36046 | 0.813023 | 3.16E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene36046 | 0.801844 | 7.43E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene36046 | 0.805696 | 1.18E-49 | -1.69E-46 |
| MS.gene05308 | MS.gene36046 | 0.811405 | 7.12E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene36046 | 0.836396 | 9.59E-57 | -1.69E-46 |
| MS.gene05364 | MS.gene36046 | 0.813489 | 2.49E-51 | -1.69E-46 |
| MS.gene053931 | MS.gene36046 | 0.801088 | 1.06E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene36046 | 0.805553 | 1.26E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene36046 | 0.81523 | 1.03E-51 | -1.69E-46 |
| MS.gene054657 | MS.gene36046 | 0.831305 | 1.80E-55 | -1.69E-46 |
| MS.gene05548 | MS.gene36046 | 0.827957 | 1.17E-54 | -1.69E-46 |
| MS.gene055512 | MS.gene36046 | 0.821969 | 3.04E-53 | -1.69E-46 |
| MS.gene055694 | MS.gene36046 | 0.802538 | 5.35E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene36046 | 0.805169 | 1.52E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene36046 | 0.80485 | 1.77E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene36046 | 0.825819 | 3.81E-54 | -1.69E-46 |
| MS.gene056498 | MS.gene36046 | 0.808814 | 2.57E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene36046 | 0.869958 | 2.10E-66 | -1.69E-46 |
| MS.gene057208 | MS.gene36046 | 0.8197 | 1.01E-52 | -1.69E-46 |
| MS.gene057314 | MS.gene36046 | 0.800319 | 1.52E-48 | -1.69E-46 |
| MS.gene057693 | MS.gene36046 | 0.813726 | 2.21E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene36046 | 0.811348 | 7.32E-51 | -1.69E-46 |
| MS.gene05795 | MS.gene36046 | 0.803255 | 3.80E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene36046 | 0.806031 | 1.00E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene36046 | 0.807171 | 5.76E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene36046 | 0.83455 | 2.81E-56 | -1.69E-46 |
| MS.gene060365 | MS.gene36046 | 0.802782 | 4.77E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene36046 | 0.802193 | 6.30E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene36046 | -0.853284 | 2.65E-61 | -1.69E-46 |
| MS.gene060918 | MS.gene36046 | 0.801466 | 8.89E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36046.t1 | MTR_8g058785 | 97.674 | 129 | 3 | 0 | 1 | 129 | 1 | 129 | 2.66e-91 | 260 |
| MS.gene36046.t1 | MTR_8g061270 | 97.674 | 129 | 3 | 0 | 1 | 129 | 1 | 129 | 2.66e-91 | 260 |
| MS.gene36046.t1 | MTR_2g078670 | 71.094 | 128 | 37 | 0 | 1 | 128 | 1 | 128 | 6.64e-64 | 191 |
| MS.gene36046.t1 | MTR_4g088505 | 57.031 | 128 | 53 | 1 | 1 | 128 | 1 | 126 | 1.78e-48 | 152 |
| MS.gene36046.t1 | MTR_3g070330 | 52.344 | 128 | 61 | 0 | 1 | 128 | 24 | 151 | 6.35e-46 | 146 |
| MS.gene36046.t1 | MTR_3g070330 | 60.194 | 103 | 41 | 0 | 1 | 103 | 24 | 126 | 6.49e-45 | 142 |
| MS.gene36046.t1 | MTR_7g068250 | 57.273 | 110 | 47 | 0 | 1 | 110 | 1 | 110 | 2.40e-44 | 141 |
| MS.gene36046.t1 | MTR_5g082490 | 59.091 | 110 | 45 | 0 | 1 | 110 | 1 | 110 | 6.54e-44 | 140 |
| MS.gene36046.t1 | MTR_4g088505 | 61.446 | 83 | 32 | 0 | 1 | 83 | 1 | 83 | 1.32e-33 | 114 |
| MS.gene36046.t1 | MTR_3g091840 | 47.423 | 97 | 51 | 0 | 12 | 108 | 8 | 104 | 2.26e-31 | 107 |
| MS.gene36046.t1 | MTR_8g027255 | 44.211 | 95 | 53 | 0 | 12 | 106 | 8 | 102 | 2.40e-26 | 95.1 |
| MS.gene36046.t1 | MTR_1g077750 | 44.048 | 84 | 47 | 0 | 12 | 95 | 8 | 91 | 6.35e-26 | 94.0 |
| MS.gene36046.t1 | MTR_1g077760 | 42.593 | 54 | 31 | 0 | 48 | 101 | 1 | 54 | 5.25e-13 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36046.t1 | AT5G53940 | 69.531 | 128 | 39 | 0 | 1 | 128 | 1 | 128 | 8.47e-62 | 185 |
| MS.gene36046.t1 | AT2G40110 | 55.814 | 129 | 56 | 1 | 1 | 128 | 1 | 129 | 4.28e-47 | 148 |
| MS.gene36046.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 1.43e-46 | 147 |
| MS.gene36046.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 1.43e-46 | 147 |
| MS.gene36046.t1 | AT3G08990 | 51.562 | 128 | 62 | 0 | 1 | 128 | 1 | 128 | 1.43e-46 | 147 |
| MS.gene36046.t1 | AT2G40110 | 64.706 | 102 | 36 | 0 | 1 | 102 | 1 | 102 | 1.66e-46 | 146 |
| MS.gene36046.t1 | AT3G55890 | 58.095 | 105 | 44 | 0 | 1 | 105 | 1 | 105 | 6.83e-42 | 135 |
| MS.gene36046.t1 | AT3G55890 | 58.095 | 105 | 44 | 0 | 1 | 105 | 1 | 105 | 6.83e-42 | 135 |
| MS.gene36046.t1 | AT3G55890 | 59.406 | 101 | 41 | 0 | 1 | 101 | 1 | 101 | 1.96e-41 | 133 |
| MS.gene36046.t1 | AT3G55890 | 59.406 | 101 | 41 | 0 | 1 | 101 | 1 | 101 | 1.96e-41 | 133 |
| MS.gene36046.t1 | AT3G11230 | 50.781 | 128 | 63 | 0 | 1 | 128 | 1 | 128 | 4.25e-41 | 133 |
| MS.gene36046.t1 | AT3G11230 | 50.781 | 128 | 63 | 0 | 1 | 128 | 34 | 161 | 1.70e-40 | 132 |
| MS.gene36046.t1 | AT3G11230 | 57.843 | 102 | 43 | 0 | 1 | 102 | 1 | 102 | 1.46e-39 | 128 |
| MS.gene36046.t1 | AT3G11230 | 57.843 | 102 | 43 | 0 | 1 | 102 | 34 | 135 | 2.62e-39 | 129 |
| MS.gene36046.t1 | AT2G40110 | 61.446 | 83 | 32 | 0 | 1 | 83 | 1 | 83 | 2.08e-35 | 117 |
| MS.gene36046.t1 | AT2G40110 | 61.446 | 83 | 32 | 0 | 1 | 83 | 1 | 83 | 2.08e-35 | 117 |
| MS.gene36046.t1 | AT4G27745 | 45.192 | 104 | 57 | 0 | 5 | 108 | 1 | 104 | 5.48e-31 | 107 |
| MS.gene36046.t1 | AT4G27745 | 45.192 | 104 | 57 | 0 | 5 | 108 | 1 | 104 | 5.48e-31 | 107 |
| MS.gene36046.t1 | AT4G27745 | 45.192 | 104 | 57 | 0 | 5 | 108 | 1 | 104 | 5.48e-31 | 107 |
| MS.gene36046.t1 | AT4G27745 | 45.192 | 104 | 57 | 0 | 5 | 108 | 1 | 104 | 5.48e-31 | 107 |
| MS.gene36046.t1 | AT4G27740 | 39.130 | 92 | 56 | 0 | 14 | 105 | 10 | 101 | 6.26e-23 | 86.7 |
Find 22 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAAAGAGCGATGCTTTC+AGG | 0.190195 | 8.1:-52552657 | MS.gene36046:CDS |
| ACTTTCCCTCTTTGTACTTT+TGG | 0.194241 | 8.1:+52552422 | None:intergenic |
| TCCACTGAATTCTGTGTTGA+AGG | 0.319590 | 8.1:-52552259 | MS.gene36046:CDS |
| GAGCTGGATGGCAGAGTTTA+CGG | 0.331875 | 8.1:-52553479 | MS.gene36046:CDS |
| TGTCGCTGCGGTCAGATAAT+TGG | 0.336845 | 8.1:-52552606 | MS.gene36046:CDS |
| GGAAGGATCGTTGATGAAAT+CGG | 0.431542 | 8.1:-52552286 | MS.gene36046:CDS |
| ATACTTACACATTATTGAAA+AGG | 0.455887 | 8.1:+52553274 | None:intergenic |
| TTTCCACTGATCTCATCTCC+AGG | 0.460967 | 8.1:-52553427 | MS.gene36046:CDS |
| GAAAAGCCAAAAGTACAAAG+AGG | 0.465104 | 8.1:-52552428 | MS.gene36046:CDS |
| AGGGAAAGTTTGTTCTTGAA+AGG | 0.474035 | 8.1:-52552408 | MS.gene36046:intron |
| TGGAAAGAGCGATGCTTTCA+GGG | 0.476055 | 8.1:-52552656 | MS.gene36046:CDS |
| AAAAGCCAAAAGTACAAAGA+GGG | 0.574439 | 8.1:-52552427 | MS.gene36046:CDS |
| TTCCACTGATCTCATCTCCA+GGG | 0.580481 | 8.1:-52553426 | MS.gene36046:intron |
| GAGTGATACTGAAGATGAGT+AGG | 0.584188 | 8.1:-52552224 | None:intergenic |
| GCTGCGGTCAGATAATTGGC+TGG | 0.590004 | 8.1:-52552602 | MS.gene36046:CDS |
| CACAGTGTGAACTTCACTAG+TGG | 0.591434 | 8.1:-52552687 | MS.gene36046:intron |
| CTTCACTAGTGGAGAAGTGG+TGG | 0.595583 | 8.1:-52552676 | MS.gene36046:CDS |
| TCTCTCATAGGAAACTGTGC+AGG | 0.598241 | 8.1:-52552452 | MS.gene36046:intron |
| TGAGATCAGTGGAAAGAGCA+AGG | 0.604806 | 8.1:+52553435 | None:intergenic |
| GCCTTCAACACAGAATTCAG+TGG | 0.633670 | 8.1:+52552258 | None:intergenic |
| TACCCTGGAGATGAGATCAG+TGG | 0.654916 | 8.1:+52553424 | None:intergenic |
| GAACTTCACTAGTGGAGAAG+TGG | 0.657506 | 8.1:-52552679 | MS.gene36046:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAATCTAATTCTAATAT+CGG | + | chr8.1:52552933-52552952 | None:intergenic | 15.0% |
| !!! | TTCAATTTTTTTGGTTAATT+AGG | - | chr8.1:52552346-52552365 | MS.gene36046:intron | 15.0% |
| !! | AATTGTATGTTAAGTTATAC+TGG | - | chr8.1:52552727-52552746 | MS.gene36046:intron | 20.0% |
| !! | ATACTTACACATTATTGAAA+AGG | + | chr8.1:52552454-52552473 | None:intergenic | 20.0% |
| !! | ATTGTATGTTAAGTTATACT+GGG | - | chr8.1:52552728-52552747 | MS.gene36046:intron | 20.0% |
| !! | TCAATAATGGTATTATAGTA+AGG | - | chr8.1:52552554-52552573 | MS.gene36046:intron | 20.0% |
| !! | TTAACCAAAAAAATTGAAGA+AGG | + | chr8.1:52552344-52552363 | None:intergenic | 20.0% |
| !!! | AATGCAATTTTATTTTCAAC+TGG | + | chr8.1:52552610-52552629 | None:intergenic | 20.0% |
| !!! | GACAGTTTTATTATCAATAA+TGG | - | chr8.1:52552541-52552560 | MS.gene36046:intron | 20.0% |
| ! | AAACAATAAGGGTTAATGAA+TGG | + | chr8.1:52552388-52552407 | None:intergenic | 25.0% |
| ! | AGAAGAAAAGCAAACAATAA+GGG | + | chr8.1:52552399-52552418 | None:intergenic | 25.0% |
| ! | AGATAAGTATTTCAACATTC+AGG | + | chr8.1:52552854-52552873 | None:intergenic | 25.0% |
| ! | ATCAGTAAAAACACACATTA+AGG | + | chr8.1:52553389-52553408 | None:intergenic | 25.0% |
| ! | GATAAGTATTTCAACATTCA+GGG | + | chr8.1:52552853-52552872 | None:intergenic | 25.0% |
| ! | TTTGTAAAAATAAGAGAGGA+TGG | + | chr8.1:52553167-52553186 | None:intergenic | 25.0% |
| !! | TCGATTTGTAAAAATAAGAG+AGG | + | chr8.1:52553171-52553190 | None:intergenic | 25.0% |
| !!! | CATTTAAGATTTGTTACTGA+TGG | + | chr8.1:52552504-52552523 | None:intergenic | 25.0% |
| !!! | TGATCCTTCTTCAATTTTTT+TGG | - | chr8.1:52552337-52552356 | MS.gene36046:intron | 25.0% |
| GAGAAGAAAAGCAAACAATA+AGG | + | chr8.1:52552400-52552419 | None:intergenic | 30.0% | |
| TAAAATTGCATCTCTCTCAT+AGG | - | chr8.1:52553261-52553280 | MS.gene36046:intron | 30.0% | |
| ! | AAAAGCCAAAAGTACAAAGA+GGG | - | chr8.1:52553298-52553317 | MS.gene36046:CDS | 30.0% |
| ! | TTTAGAAGGATCAAAAGTAC+TGG | + | chr8.1:52553245-52553264 | None:intergenic | 30.0% |
| !! | ATTGTTTGCTTTTCTTCTCA+GGG | - | chr8.1:52552401-52552420 | MS.gene36046:intron | 30.0% |
| !! | TATTGTTTGCTTTTCTTCTC+AGG | - | chr8.1:52552400-52552419 | MS.gene36046:intron | 30.0% |
| !! | TTGTTACTGATGGATTAACA+AGG | + | chr8.1:52552494-52552513 | None:intergenic | 30.0% |
| CATGATATGATATGATACCC+TGG | + | chr8.1:52552319-52552338 | None:intergenic | 35.0% | |
| CTCAACAAATTGAAATGCCT+CGG | + | chr8.1:52552696-52552715 | None:intergenic | 35.0% | |
| GTAAAAATAAGAGAGGATGG+TGG | + | chr8.1:52553164-52553183 | None:intergenic | 35.0% | |
| TATACTGGGATTGTTGTAAC+TGG | - | chr8.1:52552742-52552761 | MS.gene36046:intron | 35.0% | |
| ! | ACTTTCCCTCTTTGTACTTT+TGG | + | chr8.1:52553306-52553325 | None:intergenic | 35.0% |
| ! | AGGGAAAGTTTGTTCTTGAA+AGG | - | chr8.1:52553317-52553336 | MS.gene36046:intron | 35.0% |
| ! | AGTTTTCATGGTTGAATGGT+GGG | - | chr8.1:52552775-52552794 | MS.gene36046:intron | 35.0% |
| ! | CAGGGATTTTATTGTCATAG+AGG | - | chr8.1:52552419-52552438 | MS.gene36046:CDS | 35.0% |
| ! | GAAAAGCCAAAAGTACAAAG+AGG | - | chr8.1:52553297-52553316 | MS.gene36046:CDS | 35.0% |
| ! | GAGAGAGATGCAATTTTAGA+AGG | + | chr8.1:52553259-52553278 | None:intergenic | 35.0% |
| ! | TGTCAGTTTTCATGGTTGAA+TGG | - | chr8.1:52552771-52552790 | MS.gene36046:intron | 35.0% |
| !! | GATATATTTTGTTGTCGCTG+CGG | - | chr8.1:52553107-52553126 | MS.gene36046:intron | 35.0% |
| ACAAAACTCCCACATACGTA+AGG | + | chr8.1:52552814-52552833 | None:intergenic | 40.0% | |
| ACGATCCTTCCTCTGTTAAA+TGG | + | chr8.1:52553430-52553449 | None:intergenic | 40.0% | |
| CATGCTTGTCCATTTAACAG+AGG | - | chr8.1:52553418-52553437 | MS.gene36046:intron | 40.0% | |
| CTAATACCAAACTAATGCCG+AGG | - | chr8.1:52552676-52552695 | MS.gene36046:CDS | 40.0% | |
| CTTGTCCATTTAACAGAGGA+AGG | - | chr8.1:52553422-52553441 | MS.gene36046:intron | 40.0% | |
| TCCACTGAATTCTGTGTTGA+AGG | - | chr8.1:52553466-52553485 | MS.gene36046:CDS | 40.0% | |
| ! | ATTTTTGCAGTTGAGCTGGA+TGG | - | chr8.1:52552234-52552253 | MS.gene36046:CDS | 40.0% |
| ! | CAGTTTTCATGGTTGAATGG+TGG | - | chr8.1:52552774-52552793 | MS.gene36046:intron | 40.0% |
| ! | CATGTGCATGCTTGTGTTTT+TGG | - | chr8.1:52553008-52553027 | MS.gene36046:intron | 40.0% |
| ! | GAGAATTTTTGCAGTTGAGC+TGG | - | chr8.1:52552230-52552249 | MS.gene36046:CDS | 40.0% |
| ! | GGAAGGATCGTTGATGAAAT+CGG | - | chr8.1:52553439-52553458 | MS.gene36046:CDS | 40.0% |
| !! | TATGTGGGAGTTTTGTACAC+CGG | - | chr8.1:52552818-52552837 | MS.gene36046:intron | 40.0% |
| ACATACGTAAGGTCCTGGAA+AGG | + | chr8.1:52552803-52552822 | None:intergenic | 45.0% | |
| CACAGTGTGAACTTCACTAG+TGG | - | chr8.1:52553038-52553057 | MS.gene36046:intron | 45.0% | |
| CATACGTAAGGTCCTGGAAA+GGG | + | chr8.1:52552802-52552821 | None:intergenic | 45.0% | |
| GAAATGCCTCGGCATTAGTT+TGG | + | chr8.1:52552685-52552704 | None:intergenic | 45.0% | |
| GAACTTCACTAGTGGAGAAG+TGG | - | chr8.1:52553046-52553065 | MS.gene36046:intron | 45.0% | |
| GCCTTCAACACAGAATTCAG+TGG | + | chr8.1:52553470-52553489 | None:intergenic | 45.0% | |
| GTGAAGTTCACACTGTGTCA+TGG | + | chr8.1:52553035-52553054 | None:intergenic | 45.0% | |
| TCTCTCATAGGAAACTGTGC+AGG | - | chr8.1:52553273-52553292 | MS.gene36046:intron | 45.0% | |
| TGAGATCAGTGGAAAGAGCA+AGG | + | chr8.1:52552293-52552312 | None:intergenic | 45.0% | |
| TGGAAAGAGCGATGCTTTCA+GGG | - | chr8.1:52553069-52553088 | MS.gene36046:intron | 45.0% | |
| TTCCACTGATCTCATCTCCA+GGG | - | chr8.1:52552299-52552318 | MS.gene36046:intron | 45.0% | |
| TTCCAGGACCTTACGTATGT+GGG | - | chr8.1:52552803-52552822 | MS.gene36046:intron | 45.0% | |
| TTTCCACTGATCTCATCTCC+AGG | - | chr8.1:52552298-52552317 | MS.gene36046:intron | 45.0% | |
| TTTCCAGGACCTTACGTATG+TGG | - | chr8.1:52552802-52552821 | MS.gene36046:intron | 45.0% | |
| ! | AAGAGCAAGGTGAGTTTTGC+AGG | + | chr8.1:52552280-52552299 | None:intergenic | 45.0% |
| ! | ATTCTGCGTCTGTGTTGATG+TGG | - | chr8.1:52552627-52552646 | MS.gene36046:CDS | 45.0% |
| !!! | GGCTAGCTTGTCAGTTTTCA+TGG | - | chr8.1:52552763-52552782 | MS.gene36046:intron | 45.0% |
| CTTCACTAGTGGAGAAGTGG+TGG | - | chr8.1:52553049-52553068 | MS.gene36046:intron | 50.0% | |
| GAGCTGGATGGCAGAGTTTA+CGG | - | chr8.1:52552246-52552265 | MS.gene36046:CDS | 50.0% | |
| GTGGAAAGAGCGATGCTTTC+AGG | - | chr8.1:52553068-52553087 | MS.gene36046:intron | 50.0% | |
| TACCCTGGAGATGAGATCAG+TGG | + | chr8.1:52552304-52552323 | None:intergenic | 50.0% | |
| TGTCGCTGCGGTCAGATAAT+TGG | - | chr8.1:52553119-52553138 | MS.gene36046:intron | 50.0% | |
| !! | TGGGAGTTTTGTACACCGGA+CGG | - | chr8.1:52552822-52552841 | MS.gene36046:intron | 50.0% |
| CTCCCACATACGTAAGGTCC+TGG | + | chr8.1:52552808-52552827 | None:intergenic | 55.0% | |
| GCTGCGGTCAGATAATTGGC+TGG | - | chr8.1:52553123-52553142 | MS.gene36046:intron | 55.0% | |
| ! | TGAATGGTGGGACCCTTTCC+AGG | - | chr8.1:52552787-52552806 | MS.gene36046:intron | 55.0% |
| !! | GGGAGTTTTGTACACCGGAC+GGG | - | chr8.1:52552823-52552842 | MS.gene36046:intron | 55.0% |
| ACATTCAGGGCAGTCCCGTC+CGG | + | chr8.1:52552840-52552859 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 52552225 | 52553522 | 52552225 | ID=MS.gene36046 |
| chr8.1 | mRNA | 52552225 | 52553522 | 52552225 | ID=MS.gene36046.t1;Parent=MS.gene36046 |
| chr8.1 | exon | 52553427 | 52553522 | 52553427 | ID=MS.gene36046.t1.exon1;Parent=MS.gene36046.t1 |
| chr8.1 | CDS | 52553427 | 52553522 | 52553427 | ID=cds.MS.gene36046.t1;Parent=MS.gene36046.t1 |
| chr8.1 | exon | 52553282 | 52553325 | 52553282 | ID=MS.gene36046.t1.exon2;Parent=MS.gene36046.t1 |
| chr8.1 | CDS | 52553282 | 52553325 | 52553282 | ID=cds.MS.gene36046.t1;Parent=MS.gene36046.t1 |
| chr8.1 | exon | 52552596 | 52552704 | 52552596 | ID=MS.gene36046.t1.exon3;Parent=MS.gene36046.t1 |
| chr8.1 | CDS | 52552596 | 52552704 | 52552596 | ID=cds.MS.gene36046.t1;Parent=MS.gene36046.t1 |
| chr8.1 | exon | 52552409 | 52552464 | 52552409 | ID=MS.gene36046.t1.exon4;Parent=MS.gene36046.t1 |
| chr8.1 | CDS | 52552409 | 52552464 | 52552409 | ID=cds.MS.gene36046.t1;Parent=MS.gene36046.t1 |
| chr8.1 | exon | 52552225 | 52552309 | 52552225 | ID=MS.gene36046.t1.exon5;Parent=MS.gene36046.t1 |
| chr8.1 | CDS | 52552225 | 52552309 | 52552225 | ID=cds.MS.gene36046.t1;Parent=MS.gene36046.t1 |
| Gene Sequence |
| Protein sequence |
