Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072952.t1 | XP_024635368.1 | 80.3 | 447 | 36 | 5 | 1 | 398 | 1 | 444 | 1.20E-178 | 636 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072952.t1 | Q39071 | 40.8 | 449 | 165 | 10 | 2 | 398 | 11 | 410 | 6.1e-62 | 239.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072952.t1 | G7JBQ1 | 80.3 | 447 | 36 | 5 | 1 | 398 | 1 | 444 | 8.7e-179 | 636.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene072952 | 0.811229 | 7.77E-51 | -1.69E-46 |
| MS.gene049989 | MS.gene072952 | 0.870971 | 9.74E-67 | -1.69E-46 |
| MS.gene050297 | MS.gene072952 | 0.850974 | 1.20E-60 | -1.69E-46 |
| MS.gene051094 | MS.gene072952 | 0.832977 | 6.95E-56 | -1.69E-46 |
| MS.gene051629 | MS.gene072952 | 0.82388 | 1.09E-53 | -1.69E-46 |
| MS.gene051742 | MS.gene072952 | 0.813235 | 2.84E-51 | -1.69E-46 |
| MS.gene051816 | MS.gene072952 | 0.804262 | 2.35E-49 | -1.69E-46 |
| MS.gene051955 | MS.gene072952 | 0.876503 | 1.33E-68 | -1.69E-46 |
| MS.gene052143 | MS.gene072952 | 0.829018 | 6.51E-55 | -1.69E-46 |
| MS.gene052308 | MS.gene072952 | 0.826808 | 2.21E-54 | -1.69E-46 |
| MS.gene052367 | MS.gene072952 | 0.874948 | 4.53E-68 | -1.69E-46 |
| MS.gene053173 | MS.gene072952 | 0.812125 | 4.96E-51 | -1.69E-46 |
| MS.gene053348 | MS.gene072952 | 0.81801 | 2.45E-52 | -1.69E-46 |
| MS.gene053416 | MS.gene072952 | 0.848852 | 4.71E-60 | -1.69E-46 |
| MS.gene053417 | MS.gene072952 | 0.848372 | 6.39E-60 | -1.69E-46 |
| MS.gene05369 | MS.gene072952 | 0.827212 | 1.77E-54 | -1.69E-46 |
| MS.gene054551 | MS.gene072952 | 0.824041 | 1.00E-53 | -1.69E-46 |
| MS.gene054552 | MS.gene072952 | 0.828467 | 8.85E-55 | -1.69E-46 |
| MS.gene054593 | MS.gene072952 | 0.82885 | 7.15E-55 | -1.69E-46 |
| MS.gene055308 | MS.gene072952 | 0.80824 | 3.41E-50 | -1.69E-46 |
| MS.gene055411 | MS.gene072952 | 0.812801 | 3.53E-51 | -1.69E-46 |
| MS.gene055578 | MS.gene072952 | 0.836765 | 7.73E-57 | -1.69E-46 |
| MS.gene055579 | MS.gene072952 | 0.834684 | 2.60E-56 | -1.69E-46 |
| MS.gene055957 | MS.gene072952 | 0.831127 | 1.99E-55 | -1.69E-46 |
| MS.gene056041 | MS.gene072952 | 0.892831 | 1.10E-74 | -1.69E-46 |
| MS.gene056042 | MS.gene072952 | 0.855922 | 4.56E-62 | -1.69E-46 |
| MS.gene05640 | MS.gene072952 | 0.801397 | 9.18E-49 | -1.69E-46 |
| MS.gene056526 | MS.gene072952 | 0.866966 | 1.94E-65 | -1.69E-46 |
| MS.gene056528 | MS.gene072952 | 0.818172 | 2.25E-52 | -1.69E-46 |
| MS.gene057458 | MS.gene072952 | 0.826054 | 3.35E-54 | -1.69E-46 |
| MS.gene058196 | MS.gene072952 | 0.867163 | 1.68E-65 | -1.69E-46 |
| MS.gene058197 | MS.gene072952 | 0.857325 | 1.76E-62 | -1.69E-46 |
| MS.gene058198 | MS.gene072952 | 0.85485 | 9.35E-62 | -1.69E-46 |
| MS.gene058827 | MS.gene072952 | 0.803639 | 3.17E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene072952 | 0.801291 | 9.65E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene072952 | 0.867087 | 1.77E-65 | -1.69E-46 |
| MS.gene059553 | MS.gene072952 | 0.834985 | 2.18E-56 | -1.69E-46 |
| MS.gene060473 | MS.gene072952 | 0.902936 | 5.82E-79 | -1.69E-46 |
| MS.gene060565 | MS.gene072952 | 0.906799 | 1.01E-80 | -1.69E-46 |
| MS.gene06057 | MS.gene072952 | 0.870533 | 1.36E-66 | -1.69E-46 |
| MS.gene06093 | MS.gene072952 | 0.831527 | 1.59E-55 | -1.69E-46 |
| MS.gene061099 | MS.gene072952 | 0.851305 | 9.67E-61 | -1.69E-46 |
| MS.gene061260 | MS.gene072952 | 0.853119 | 2.95E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072952 | MS.gene64859 | PPI |
| MS.gene011448 | MS.gene072952 | PPI |
| MS.gene072952 | MS.gene89090 | PPI |
| MS.gene072952 | MS.gene028366 | PPI |
| MS.gene072952 | MS.gene24450 | PPI |
| MS.gene072952 | MS.gene22482 | PPI |
| MS.gene072952 | MS.gene018518 | PPI |
| MS.gene072952 | MS.gene55900 | PPI |
| MS.gene072952 | MS.gene62819 | PPI |
| MS.gene36424 | MS.gene072952 | PPI |
| MS.gene65301 | MS.gene072952 | PPI |
| MS.gene072952 | MS.gene044085 | PPI |
| MS.gene67884 | MS.gene072952 | PPI |
| MS.gene072952 | MS.gene00478 | PPI |
| MS.gene072952 | MS.gene09785 | PPI |
| MS.gene36273 | MS.gene072952 | PPI |
| MS.gene072952 | MS.gene00063 | PPI |
| MS.gene072952 | MS.gene033401 | PPI |
| MS.gene072952 | MS.gene007485 | PPI |
| MS.gene072952 | MS.gene71260 | PPI |
| MS.gene35086 | MS.gene072952 | PPI |
| MS.gene072952 | MS.gene37226 | PPI |
| MS.gene67555 | MS.gene072952 | PPI |
| MS.gene061932 | MS.gene072952 | PPI |
| MS.gene072952 | MS.gene007486 | PPI |
| MS.gene072952 | MS.gene68361 | PPI |
| MS.gene072952 | MS.gene36271 | PPI |
| MS.gene065314 | MS.gene072952 | PPI |
| MS.gene072952 | MS.gene00474 | PPI |
| MS.gene072952 | MS.gene28739 | PPI |
| MS.gene072952 | MS.gene007487 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072952.t1 | MTR_3g107970 | 80.313 | 447 | 36 | 5 | 1 | 398 | 1 | 444 | 0.0 | 693 |
| MS.gene072952.t1 | MTR_1g011470 | 47.209 | 430 | 126 | 12 | 17 | 397 | 14 | 391 | 7.09e-110 | 329 |
| MS.gene072952.t1 | MTR_2g102520 | 39.198 | 449 | 198 | 14 | 11 | 396 | 8 | 444 | 2.16e-73 | 237 |
| MS.gene072952.t1 | MTR_2g102550 | 34.967 | 449 | 183 | 10 | 3 | 396 | 2 | 396 | 2.62e-68 | 222 |
| MS.gene072952.t1 | MTR_3g088415 | 44.490 | 245 | 91 | 4 | 197 | 396 | 225 | 469 | 5.33e-58 | 197 |
| MS.gene072952.t1 | MTR_3g088405 | 41.633 | 245 | 98 | 4 | 196 | 395 | 227 | 471 | 5.55e-54 | 187 |
| MS.gene072952.t1 | MTR_3g088415 | 46.860 | 207 | 65 | 4 | 197 | 358 | 225 | 431 | 1.48e-52 | 181 |
| MS.gene072952.t1 | MTR_3g088415 | 50.920 | 163 | 48 | 3 | 197 | 327 | 225 | 387 | 3.07e-47 | 166 |
| MS.gene072952.t1 | MTR_1g018680 | 39.592 | 245 | 101 | 5 | 201 | 398 | 80 | 324 | 3.03e-45 | 160 |
| MS.gene072952.t1 | MTR_3g102530 | 37.200 | 250 | 110 | 4 | 192 | 394 | 64 | 313 | 1.24e-42 | 152 |
| MS.gene072952.t1 | MTR_3g102520 | 35.628 | 247 | 112 | 4 | 199 | 398 | 78 | 324 | 4.39e-38 | 141 |
| MS.gene072952.t1 | MTR_3g102510 | 34.310 | 239 | 112 | 3 | 205 | 398 | 67 | 305 | 3.80e-37 | 138 |
| MS.gene072952.t1 | MTR_3g102540 | 40.529 | 227 | 88 | 7 | 216 | 398 | 13 | 236 | 1.76e-34 | 129 |
| MS.gene072952.t1 | MTR_3g102560 | 38.117 | 223 | 96 | 4 | 217 | 397 | 69 | 291 | 6.42e-34 | 129 |
| MS.gene072952.t1 | MTR_5g023790 | 35.683 | 227 | 103 | 6 | 197 | 382 | 156 | 380 | 6.57e-30 | 119 |
| MS.gene072952.t1 | MTR_5g023790 | 35.683 | 227 | 103 | 6 | 197 | 382 | 156 | 380 | 8.61e-30 | 119 |
| MS.gene072952.t1 | MTR_5g088980 | 34.199 | 231 | 102 | 8 | 198 | 383 | 150 | 375 | 1.47e-27 | 113 |
| MS.gene072952.t1 | MTR_7g089080 | 37.143 | 210 | 83 | 7 | 197 | 359 | 183 | 390 | 2.16e-26 | 112 |
| MS.gene072952.t1 | MTR_8g074000 | 34.123 | 211 | 97 | 5 | 212 | 382 | 176 | 384 | 4.20e-26 | 109 |
| MS.gene072952.t1 | MTR_5g023790 | 37.725 | 167 | 70 | 4 | 197 | 330 | 156 | 321 | 8.52e-24 | 101 |
| MS.gene072952.t1 | MTR_3g060770 | 26.106 | 226 | 114 | 5 | 181 | 359 | 2 | 221 | 1.05e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072952.t1 | AT5G25380 | 41.855 | 442 | 154 | 12 | 10 | 398 | 19 | 410 | 2.09e-85 | 267 |
| MS.gene072952.t1 | AT5G25380 | 41.270 | 441 | 152 | 11 | 10 | 398 | 19 | 404 | 9.88e-84 | 262 |
| MS.gene072952.t1 | AT5G25380 | 41.270 | 441 | 152 | 11 | 10 | 398 | 19 | 404 | 1.81e-83 | 262 |
| MS.gene072952.t1 | AT5G25380 | 41.270 | 441 | 152 | 11 | 10 | 398 | 19 | 404 | 1.81e-83 | 262 |
| MS.gene072952.t1 | AT5G11300 | 40.460 | 435 | 157 | 12 | 13 | 398 | 22 | 403 | 3.41e-81 | 256 |
| MS.gene072952.t1 | AT1G80370 | 37.204 | 422 | 176 | 9 | 31 | 398 | 42 | 428 | 4.02e-70 | 228 |
| MS.gene072952.t1 | AT5G11300 | 39.646 | 396 | 137 | 12 | 13 | 359 | 22 | 364 | 3.49e-68 | 221 |
| MS.gene072952.t1 | AT1G15570 | 38.560 | 389 | 166 | 7 | 62 | 398 | 52 | 419 | 1.97e-67 | 221 |
| MS.gene072952.t1 | AT1G44110 | 42.063 | 252 | 101 | 3 | 192 | 398 | 174 | 425 | 4.77e-59 | 199 |
| MS.gene072952.t1 | AT1G77390 | 42.797 | 236 | 90 | 3 | 196 | 386 | 162 | 397 | 6.72e-56 | 190 |
| MS.gene072952.t1 | AT5G43080 | 40.000 | 245 | 102 | 3 | 198 | 397 | 73 | 317 | 5.94e-51 | 175 |
| MS.gene072952.t1 | AT5G43080 | 40.417 | 240 | 103 | 3 | 198 | 397 | 73 | 312 | 7.83e-51 | 174 |
| MS.gene072952.t1 | AT1G47210 | 39.919 | 248 | 102 | 4 | 198 | 398 | 88 | 335 | 7.31e-50 | 172 |
| MS.gene072952.t1 | AT1G47220 | 40.816 | 245 | 98 | 4 | 198 | 395 | 42 | 286 | 3.99e-47 | 164 |
| MS.gene072952.t1 | AT1G47230 | 38.554 | 249 | 106 | 4 | 197 | 398 | 80 | 328 | 9.84e-47 | 164 |
| MS.gene072952.t1 | AT1G47230 | 38.400 | 250 | 106 | 4 | 197 | 398 | 80 | 329 | 1.01e-46 | 164 |
| MS.gene072952.t1 | AT1G20610 | 33.921 | 227 | 107 | 6 | 197 | 382 | 161 | 385 | 2.92e-27 | 112 |
| MS.gene072952.t1 | AT4G35620 | 34.361 | 227 | 106 | 6 | 197 | 382 | 156 | 380 | 8.46e-27 | 111 |
| MS.gene072952.t1 | AT4G35620 | 34.361 | 227 | 106 | 6 | 197 | 382 | 156 | 380 | 9.37e-27 | 110 |
| MS.gene072952.t1 | AT1G76310 | 35.749 | 207 | 90 | 5 | 195 | 359 | 159 | 364 | 1.21e-26 | 110 |
| MS.gene072952.t1 | AT1G76310 | 36.098 | 205 | 88 | 5 | 197 | 359 | 161 | 364 | 1.43e-26 | 110 |
| MS.gene072952.t1 | AT5G06150 | 33.617 | 235 | 112 | 7 | 189 | 382 | 158 | 389 | 2.99e-26 | 110 |
| MS.gene072952.t1 | AT3G11520 | 36.555 | 238 | 99 | 8 | 197 | 389 | 143 | 373 | 3.49e-26 | 108 |
| MS.gene072952.t1 | AT3G11520 | 36.364 | 231 | 95 | 8 | 197 | 382 | 143 | 366 | 1.62e-25 | 107 |
| MS.gene072952.t1 | AT4G37490 | 33.766 | 231 | 104 | 8 | 196 | 382 | 148 | 373 | 1.90e-25 | 107 |
| MS.gene072952.t1 | AT2G17620 | 34.802 | 227 | 105 | 6 | 197 | 382 | 155 | 379 | 2.37e-25 | 107 |
| MS.gene072952.t1 | AT1G47210 | 54.651 | 86 | 37 | 1 | 198 | 281 | 88 | 173 | 1.72e-24 | 100 |
| MS.gene072952.t1 | AT1G16330 | 32.243 | 214 | 99 | 6 | 212 | 383 | 395 | 604 | 2.45e-24 | 105 |
| MS.gene072952.t1 | AT2G26760 | 33.333 | 231 | 104 | 9 | 197 | 382 | 114 | 339 | 2.57e-24 | 103 |
| MS.gene072952.t1 | AT1G76310 | 31.760 | 233 | 88 | 5 | 197 | 359 | 161 | 392 | 3.95e-22 | 98.2 |
| MS.gene072952.t1 | AT1G76310 | 35.795 | 176 | 78 | 4 | 195 | 336 | 159 | 333 | 3.98e-22 | 96.7 |
| MS.gene072952.t1 | AT5G06150 | 34.254 | 181 | 84 | 5 | 189 | 336 | 158 | 336 | 1.05e-20 | 92.8 |
| MS.gene072952.t1 | AT1G34460 | 35.526 | 152 | 83 | 4 | 189 | 327 | 234 | 383 | 2.76e-16 | 80.9 |
| MS.gene072952.t1 | AT1G34460 | 35.526 | 152 | 83 | 4 | 189 | 327 | 248 | 397 | 2.77e-16 | 80.9 |
| MS.gene072952.t1 | AT1G34460 | 35.526 | 152 | 83 | 4 | 189 | 327 | 248 | 397 | 2.77e-16 | 80.9 |
| MS.gene072952.t1 | AT1G34460 | 35.526 | 152 | 83 | 4 | 189 | 327 | 248 | 397 | 2.77e-16 | 80.9 |
| MS.gene072952.t1 | AT1G34460 | 35.526 | 152 | 83 | 4 | 189 | 327 | 248 | 397 | 2.77e-16 | 80.9 |
| MS.gene072952.t1 | AT1G34460 | 35.526 | 152 | 83 | 4 | 189 | 327 | 248 | 397 | 2.97e-16 | 80.9 |
| MS.gene072952.t1 | AT1G34460 | 35.526 | 152 | 83 | 4 | 189 | 327 | 245 | 394 | 3.05e-16 | 80.9 |
| MS.gene072952.t1 | AT1G34460 | 35.526 | 152 | 83 | 4 | 189 | 327 | 245 | 394 | 3.05e-16 | 80.9 |
| MS.gene072952.t1 | AT1G34460 | 35.526 | 152 | 83 | 4 | 189 | 327 | 248 | 397 | 3.54e-16 | 80.5 |
Find 73 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTAAAGGATTCTCAAATT+TGG | 0.182649 | 3.1:+85629233 | MS.gene072952:CDS |
| CAGATCAAGGGCAAAGGTTT+TGG | 0.191093 | 3.1:+85627715 | MS.gene072952:CDS |
| TGGGATTTATACCTGAAAAT+TGG | 0.195568 | 3.1:-85627912 | None:intergenic |
| CGAACTTTGTTGTATATATC+AGG | 0.212202 | 3.1:-85629268 | None:intergenic |
| CTGCAACTTCTCCATGTAAT+TGG | 0.276568 | 3.1:-85629646 | None:intergenic |
| TACATACCTGAGAAATGTTT+TGG | 0.301501 | 3.1:-85630623 | None:intergenic |
| GAGTGGACGCTCTTCATCTT+TGG | 0.302032 | 3.1:-85627684 | None:intergenic |
| TTCTCCATGTAATTGGTTGA+TGG | 0.359361 | 3.1:-85629639 | None:intergenic |
| CACCATTGCTGCAGTAACTT+TGG | 0.388234 | 3.1:+85628804 | MS.gene072952:CDS |
| CAAAACCTTTGCCCTTGATC+TGG | 0.423251 | 3.1:-85627714 | None:intergenic |
| TCTTCCAGTGCAAGAACAAC+TGG | 0.426769 | 3.1:-85631390 | None:intergenic |
| ACAGTAAGGTAAAGAGTGTC+TGG | 0.432601 | 3.1:-85630023 | None:intergenic |
| AAGAGCAACAGCTTCCAAAA+AGG | 0.433513 | 3.1:+85627766 | MS.gene072952:CDS |
| GAGTGGTTGAGGGGTCCATC+TGG | 0.434854 | 3.1:-85631221 | None:intergenic |
| TGCGTGGAATTCTGATTGAT+TGG | 0.439226 | 3.1:+85629688 | MS.gene072952:CDS |
| ATATATGCAGACTACAACTC+TGG | 0.439974 | 3.1:+85631332 | MS.gene072952:intron |
| TAGCTCTGAAGCTTTGTAGT+TGG | 0.450188 | 3.1:-85631364 | None:intergenic |
| AACATGGTCACTTATGTTGT+TGG | 0.450701 | 3.1:-85628854 | None:intergenic |
| TATCGATGTCTACAAAGGTC+AGG | 0.459319 | 3.1:-85629207 | None:intergenic |
| CTGCTGTATTCCTTGCCAGA+TGG | 0.472091 | 3.1:+85631206 | MS.gene072952:CDS |
| ATGGATGTTCTGAGTGGTTG+AGG | 0.472613 | 3.1:-85631232 | None:intergenic |
| CCACAACCAAAACATTTCTC+AGG | 0.475913 | 3.1:+85630617 | MS.gene072952:CDS |
| ATCAGAATTCCACGCATGCT+TGG | 0.476428 | 3.1:-85629681 | None:intergenic |
| CACTCAGAATTACCAGATCA+AGG | 0.485115 | 3.1:+85627702 | MS.gene072952:CDS |
| TTGTGCTGATGAAACTTCAA+TGG | 0.487200 | 3.1:-85628719 | None:intergenic |
| GATCAATGAGGTTCACAGTA+AGG | 0.489451 | 3.1:-85630037 | None:intergenic |
| TAGCATGGAGAGACAACCTT+TGG | 0.489473 | 3.1:-85631427 | None:intergenic |
| TGTAAGAAGATTGTGCTGCT+TGG | 0.497059 | 3.1:-85630741 | None:intergenic |
| ATGTTCCTCACCGTAAAAGA+AGG | 0.498778 | 3.1:+85627828 | MS.gene072952:CDS |
| AAAACCAGTTGTTCTTGCAC+TGG | 0.503437 | 3.1:+85631386 | MS.gene072952:CDS |
| CCTCACCGTAAAAGAAGGGC+AGG | 0.504738 | 3.1:+85627833 | MS.gene072952:CDS |
| GGTTTCTGAGGAATATAAGC+TGG | 0.509301 | 3.1:+85629998 | MS.gene072952:intron |
| TGGATGTTCTGAGTGGTTGA+GGG | 0.514544 | 3.1:-85631231 | None:intergenic |
| GAACTTTGTTGTATATATCA+GGG | 0.514973 | 3.1:-85629267 | None:intergenic |
| AATTCTGATTGATTGGCTTG+TGG | 0.519075 | 3.1:+85629695 | MS.gene072952:CDS |
| CATAAATATGATTTGTGAGA+AGG | 0.520200 | 3.1:+85629168 | MS.gene072952:CDS |
| TGAAGTTTCATCAGCACAAG+AGG | 0.526624 | 3.1:+85628723 | MS.gene072952:CDS |
| TTACTGTGAACCTCATTGAT+CGG | 0.529430 | 3.1:+85630039 | MS.gene072952:CDS |
| AGAATTGTCTACCATAAAGA+TGG | 0.537932 | 3.1:+85628768 | MS.gene072952:CDS |
| GCAGAAGCAGCCACACGAGA+AGG | 0.540170 | 3.1:-85631187 | None:intergenic |
| TTGGACATACAATGTTCAGT+TGG | 0.549012 | 3.1:-85628835 | None:intergenic |
| GGACCCTCTTCGGAAAATGA+AGG | 0.550131 | 3.1:+85627740 | MS.gene072952:CDS |
| AACCAAAGTTACTGCAGCAA+TGG | 0.556672 | 3.1:-85628806 | None:intergenic |
| AAGACCATCAACCAATTACA+TGG | 0.561852 | 3.1:+85629635 | MS.gene072952:CDS |
| TTGTGAGAAGGTAGGAGCCT+CGG | 0.564379 | 3.1:+85629180 | MS.gene072952:CDS |
| ACAAGAGGATGTTAAAGAGA+AGG | 0.567620 | 3.1:+85628738 | MS.gene072952:CDS |
| AGCAGCACAATCTTCTTACA+AGG | 0.568751 | 3.1:+85630744 | MS.gene072952:CDS |
| CCTTTGTTTGGGACTTGGAG+AGG | 0.572862 | 3.1:-85628932 | None:intergenic |
| AACTTTGTTGTATATATCAG+GGG | 0.581055 | 3.1:-85629266 | None:intergenic |
| TGTTTAACACGTTTATCATG+TGG | 0.581458 | 3.1:-85627887 | None:intergenic |
| GACCCTCTTCGGAAAATGAA+GGG | 0.596652 | 3.1:+85627741 | MS.gene072952:CDS |
| GATCTGCAACTTAATACCAA+AGG | 0.597942 | 3.1:+85631411 | MS.gene072952:CDS |
| ACAGTTTCTACCTTCTCGTG+TGG | 0.603003 | 3.1:+85631177 | MS.gene072952:CDS |
| TCTGATTGATTGGCTTGTGG+AGG | 0.610856 | 3.1:+85629698 | MS.gene072952:CDS |
| TACAAAGGTCAGGCGATCCG+AGG | 0.611523 | 3.1:-85629197 | None:intergenic |
| GTTGAGGGGTCCATCTGGCA+AGG | 0.616376 | 3.1:-85631216 | None:intergenic |
| GTTGAAGAAACCGATCAATG+AGG | 0.620068 | 3.1:-85630049 | None:intergenic |
| AATTACCAGATCAAGGGCAA+AGG | 0.620424 | 3.1:+85627709 | MS.gene072952:CDS |
| CAGATAACTGAAAACGCAGA+AGG | 0.624641 | 3.1:-85630591 | None:intergenic |
| TCAACCACTCAGAACATCCA+TGG | 0.625145 | 3.1:+85631234 | MS.gene072952:CDS |
| ACTCAGAATTACCAGATCAA+GGG | 0.628344 | 3.1:+85627703 | MS.gene072952:CDS |
| ATGCAAGAATGTGTGAACTC+TGG | 0.628364 | 3.1:+85628898 | MS.gene072952:CDS |
| ACATTCTTGCATTGAAAGTG+TGG | 0.640397 | 3.1:-85628887 | None:intergenic |
| GAAGCAAAATTCTTCACTCG+AGG | 0.640973 | 3.1:-85630509 | None:intergenic |
| TGTTCCTCACCGTAAAAGAA+GGG | 0.641902 | 3.1:+85627829 | MS.gene072952:CDS |
| AATATGATTTGTGAGAAGGT+AGG | 0.642690 | 3.1:+85629172 | MS.gene072952:CDS |
| GGATGTTCTGAGTGGTTGAG+GGG | 0.643787 | 3.1:-85631230 | None:intergenic |
| GATATTTCTCCAAGCATGCG+TGG | 0.654313 | 3.1:+85629672 | MS.gene072952:CDS |
| CTTGATCTGGTAATTCTGAG+TGG | 0.660376 | 3.1:-85627701 | None:intergenic |
| CATACCATGGATGTTCTGAG+TGG | 0.698781 | 3.1:-85631238 | None:intergenic |
| GTGTGGTGTCTGTCATAACA+TGG | 0.706964 | 3.1:-85628870 | None:intergenic |
| CTCACCGTAAAAGAAGGGCA+GGG | 0.713304 | 3.1:+85627834 | MS.gene072952:CDS |
| CAACAAAGTTCGAGTCACCG+AGG | 0.719869 | 3.1:+85629279 | MS.gene072952:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATAAAAAAAGTTACT+AGG | + | chr3.1:85629055-85629074 | MS.gene072952:intron | 10.0% |
| !!! | TAATGAAAATTTTATGTTTT+GGG | - | chr3.1:85628344-85628363 | None:intergenic | 10.0% |
| !!! | TATAATTTAAAACATGAATT+TGG | - | chr3.1:85627947-85627966 | None:intergenic | 10.0% |
| !! | GATTGTTTAATAATGAATTA+CGG | - | chr3.1:85629310-85629329 | None:intergenic | 15.0% |
| !! | TATTTATATCTTCTAAACAA+AGG | - | chr3.1:85631287-85631306 | None:intergenic | 15.0% |
| !!! | AATTGGTACATTTTATTTTA+TGG | - | chr3.1:85628238-85628257 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTATATTATCCAA+AGG | - | chr3.1:85629051-85629070 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATATTATCCAAA+GGG | - | chr3.1:85629050-85629069 | None:intergenic | 15.0% |
| !!! | GTAATGAAAATTTTATGTTT+TGG | - | chr3.1:85628345-85628364 | None:intergenic | 15.0% |
| !! | ATCAATATCACCATATAATT+AGG | + | chr3.1:85627966-85627985 | MS.gene072952:intron | 20.0% |
| !! | TATGATAGAATAGAACATTA+TGG | + | chr3.1:85628049-85628068 | MS.gene072952:intron | 20.0% |
| !! | TATTGAAATAAACCTTTGTT+TGG | - | chr3.1:85628947-85628966 | None:intergenic | 20.0% |
| !! | TCTATTCTTAGTACAAAAAT+AGG | - | chr3.1:85629547-85629566 | None:intergenic | 20.0% |
| !!! | AAAACATTGATGATAAGTTT+TGG | + | chr3.1:85629590-85629609 | MS.gene072952:intron | 20.0% |
| !!! | AAATCTTTCTGATAGTTTTT+AGG | - | chr3.1:85627999-85628018 | None:intergenic | 20.0% |
| !!! | AAGATTTGAAATTAATGAGT+TGG | + | chr3.1:85628012-85628031 | MS.gene072952:intron | 20.0% |
| !!! | AATTTAACTTAGTATGTGTT+TGG | + | chr3.1:85630793-85630812 | MS.gene072952:intron | 20.0% |
| !!! | ACTAGTATAAAACATGTTTT+AGG | + | chr3.1:85628984-85629003 | MS.gene072952:intron | 20.0% |
| !!! | ATTGAAATAAACCTTTGTTT+GGG | - | chr3.1:85628946-85628965 | None:intergenic | 20.0% |
| !!! | GTAAGTACTATTTTTTGTAA+TGG | + | chr3.1:85630131-85630150 | MS.gene072952:intron | 20.0% |
| !!! | TAAACTTTATCTTGTTATAC+AGG | + | chr3.1:85631083-85631102 | MS.gene072952:intron | 20.0% |
| ! | AAAAGAAGAGGTAGTAAAAA+TGG | + | chr3.1:85630552-85630571 | MS.gene072952:intron | 25.0% |
| ! | AAATTGTAGAATCTCATCTT+AGG | + | chr3.1:85628422-85628441 | MS.gene072952:intron | 25.0% |
| ! | ACTATCATTTCCTAATGATA+TGG | - | chr3.1:85628135-85628154 | None:intergenic | 25.0% |
| ! | ACTTCAACAAACTGTAATTA+AGG | - | chr3.1:85629926-85629945 | None:intergenic | 25.0% |
| ! | AGAATTCTTTGATAAGGTTA+TGG | - | chr3.1:85629791-85629810 | None:intergenic | 25.0% |
| ! | AGACATCGATAAAAAGTTAA+AGG | + | chr3.1:85629219-85629238 | MS.gene072952:CDS | 25.0% |
| ! | AGTTAAAGGATTCTCAAATT+TGG | + | chr3.1:85629233-85629252 | MS.gene072952:CDS | 25.0% |
| ! | ATAGGATATATACAATGTGA+TGG | + | chr3.1:85629847-85629866 | MS.gene072952:intron | 25.0% |
| ! | CAAAAACATAGTTGAATGAT+AGG | + | chr3.1:85629829-85629848 | MS.gene072952:intron | 25.0% |
| ! | CTAAGTTAAATTGTAGATAG+TGG | - | chr3.1:85630785-85630804 | None:intergenic | 25.0% |
| ! | CTGTAAAATGGATAACTAAT+CGG | - | chr3.1:85628650-85628669 | None:intergenic | 25.0% |
| ! | GTACAAAAATAGGATTACTT+TGG | - | chr3.1:85629537-85629556 | None:intergenic | 25.0% |
| ! | TAAAATGTACCAATTGAACT+TGG | + | chr3.1:85628243-85628262 | MS.gene072952:intron | 25.0% |
| ! | TAATACATACACAAAAGAAG+AGG | + | chr3.1:85630540-85630559 | MS.gene072952:intron | 25.0% |
| ! | TAGATGAGAATTCTTTGATA+AGG | - | chr3.1:85629797-85629816 | None:intergenic | 25.0% |
| ! | TTGATCTATTATTGTCTTTC+AGG | + | chr3.1:85630710-85630729 | MS.gene072952:intron | 25.0% |
| !! | AACTTTGTTGTATATATCAG+GGG | - | chr3.1:85629269-85629288 | None:intergenic | 25.0% |
| !! | ATGAATTTGGTGACAAAATT+GGG | - | chr3.1:85627934-85627953 | None:intergenic | 25.0% |
| !! | CATAAATATGATTTGTGAGA+AGG | + | chr3.1:85629168-85629187 | MS.gene072952:CDS | 25.0% |
| !! | GAACTTTGTTGTATATATCA+GGG | - | chr3.1:85629270-85629289 | None:intergenic | 25.0% |
| !! | TAAAGAGAAAAGTAGCATTT+TGG | - | chr3.1:85630319-85630338 | None:intergenic | 25.0% |
| !! | TAATGAGTTGGACTAAAATA+TGG | + | chr3.1:85628024-85628043 | MS.gene072952:intron | 25.0% |
| !! | TGTTAAACAATCCAATTTTC+AGG | + | chr3.1:85627901-85627920 | MS.gene072952:CDS | 25.0% |
| !! | TTCTTTTTGAACTATGACTA+AGG | + | chr3.1:85630209-85630228 | MS.gene072952:intron | 25.0% |
| !!! | CAACTATGTTTTTGATTGAA+AGG | - | chr3.1:85629823-85629842 | None:intergenic | 25.0% |
| !!! | GTTTTTTTCCCAATATCATT+CGG | + | chr3.1:85630431-85630450 | MS.gene072952:intron | 25.0% |
| !!! | TTAGCTTTGTGTTTTTCTTT+TGG | - | chr3.1:85628687-85628706 | None:intergenic | 25.0% |
| AACTATGACTAAGGATATCT+AGG | + | chr3.1:85630218-85630237 | MS.gene072952:intron | 30.0% | |
| AAGAATAGAGCAGAATCATT+AGG | + | chr3.1:85629558-85629577 | MS.gene072952:intron | 30.0% | |
| AAGATTGTCCAATAGTTAAG+AGG | + | chr3.1:85628499-85628518 | MS.gene072952:intron | 30.0% | |
| AATAGATTTGCCTTCAAAGT+TGG | + | chr3.1:85628280-85628299 | MS.gene072952:intron | 30.0% | |
| AGAATTGTCTACCATAAAGA+TGG | + | chr3.1:85628768-85628787 | MS.gene072952:CDS | 30.0% | |
| AGACAACATGACAGTAATTA+TGG | - | chr3.1:85629131-85629150 | None:intergenic | 30.0% | |
| AGGTCTTCTTCCTAATTATA+TGG | - | chr3.1:85627979-85627998 | None:intergenic | 30.0% | |
| AGGTTATAGTTGCATTTGAA+TGG | + | chr3.1:85629895-85629914 | MS.gene072952:intron | 30.0% | |
| ATAGATTTGCCTTCAAAGTT+GGG | + | chr3.1:85628281-85628300 | MS.gene072952:intron | 30.0% | |
| ATCTTAGACCGAATGATATT+GGG | - | chr3.1:85630442-85630461 | None:intergenic | 30.0% | |
| GATTGATCTATCTAGGTAAT+TGG | + | chr3.1:85628185-85628204 | MS.gene072952:intron | 30.0% | |
| GGTGAAATATCTTAGAAGTT+TGG | + | chr3.1:85629102-85629121 | MS.gene072952:intron | 30.0% | |
| GTTGTTATCACCATATCATT+AGG | + | chr3.1:85628122-85628141 | MS.gene072952:intron | 30.0% | |
| TAACTATCACCAAATGCATT+CGG | - | chr3.1:85630377-85630396 | None:intergenic | 30.0% | |
| TACAACTCTTTATGATGATC+AGG | + | chr3.1:85629875-85629894 | MS.gene072952:intron | 30.0% | |
| TCAATGTAAGCAAGTATTCT+AGG | + | chr3.1:85629437-85629456 | MS.gene072952:intron | 30.0% | |
| TCATTTAATCCGAATGCATT+TGG | + | chr3.1:85630365-85630384 | MS.gene072952:intron | 30.0% | |
| TGACATTGCAATTTAGCATA+TGG | - | chr3.1:85629019-85629038 | None:intergenic | 30.0% | |
| TGATAAGGTTATGGACAAAA+AGG | - | chr3.1:85629782-85629801 | None:intergenic | 30.0% | |
| TGGGATTTATACCTGAAAAT+TGG | - | chr3.1:85627915-85627934 | None:intergenic | 30.0% | |
| TGTTTAACACGTTTATCATG+TGG | - | chr3.1:85627890-85627909 | None:intergenic | 30.0% | |
| ! | AATATGATTTGTGAGAAGGT+AGG | + | chr3.1:85629172-85629191 | MS.gene072952:CDS | 30.0% |
| ! | CATGAATTTGGTGACAAAAT+TGG | - | chr3.1:85627935-85627954 | None:intergenic | 30.0% |
| ! | CGAACTTTGTTGTATATATC+AGG | - | chr3.1:85629271-85629290 | None:intergenic | 30.0% |
| ! | CTTTTTATCGATGTCTACAA+AGG | - | chr3.1:85629215-85629234 | None:intergenic | 30.0% |
| ! | TACATACCTGAGAAATGTTT+TGG | - | chr3.1:85630626-85630645 | None:intergenic | 30.0% |
| ! | TTTCTTTTGGTAAACTCCTT+TGG | - | chr3.1:85628674-85628693 | None:intergenic | 30.0% |
| !! | AAGCTATAAATCCTAGCTTT+TGG | - | chr3.1:85630935-85630954 | None:intergenic | 30.0% |
| !! | ATGGATTTTGACATGTTTGA+TGG | + | chr3.1:85630857-85630876 | MS.gene072952:intron | 30.0% |
| !! | CGATTAGTTATCCATTTTAC+AGG | + | chr3.1:85628648-85628667 | MS.gene072952:intron | 30.0% |
| !! | CTATGTTTTTGATTGAAAGG+CGG | - | chr3.1:85629820-85629839 | None:intergenic | 30.0% |
| !! | TTTTGACTCTACCATCTTTA+TGG | - | chr3.1:85628782-85628801 | None:intergenic | 30.0% |
| !!! | AAGCTTTTTTCAACTAAGTG+GGG | - | chr3.1:85628098-85628117 | None:intergenic | 30.0% |
| !!! | ACTATTTTTTGTAATGGTCC+TGG | + | chr3.1:85630137-85630156 | MS.gene072952:intron | 30.0% |
| !!! | CAAGCTTTTTTCAACTAAGT+GGG | - | chr3.1:85628099-85628118 | None:intergenic | 30.0% |
| AACATGGTCACTTATGTTGT+TGG | - | chr3.1:85628857-85628876 | None:intergenic | 35.0% | |
| AAGACCATCAACCAATTACA+TGG | + | chr3.1:85629635-85629654 | MS.gene072952:CDS | 35.0% | |
| AATGAATTACGGACAAACCT+CGG | - | chr3.1:85629299-85629318 | None:intergenic | 35.0% | |
| AATGTCATAAGATTGCCCTT+TGG | + | chr3.1:85629032-85629051 | MS.gene072952:intron | 35.0% | |
| ACAAGAGGATGTTAAAGAGA+AGG | + | chr3.1:85628738-85628757 | MS.gene072952:CDS | 35.0% | |
| ACATGCAGATTGATCTATCT+AGG | + | chr3.1:85628178-85628197 | MS.gene072952:intron | 35.0% | |
| ACATTCTTGCATTGAAAGTG+TGG | - | chr3.1:85628890-85628909 | None:intergenic | 35.0% | |
| ACTCAGAATTACCAGATCAA+GGG | + | chr3.1:85627703-85627722 | MS.gene072952:CDS | 35.0% | |
| ACTTACATACCCAACTTTGA+AGG | - | chr3.1:85628293-85628312 | None:intergenic | 35.0% | |
| AGAATTCTAACTCTGAGCAA+CGG | - | chr3.1:85630177-85630196 | None:intergenic | 35.0% | |
| AGAGGTAGTAAAAATGGAGA+AGG | + | chr3.1:85630558-85630577 | MS.gene072952:intron | 35.0% | |
| AGTGATTCTAACCAAAAGCT+AGG | + | chr3.1:85630921-85630940 | MS.gene072952:intron | 35.0% | |
| ATATATGCAGACTACAACTC+TGG | + | chr3.1:85631332-85631351 | MS.gene072952:intron | 35.0% | |
| ATTATGGCGTAATTTGATCC+TGG | + | chr3.1:85628065-85628084 | MS.gene072952:intron | 35.0% | |
| CAAGTTTGATTCAGAAACAC+AGG | + | chr3.1:85630071-85630090 | MS.gene072952:intron | 35.0% | |
| CATCTTAGACCGAATGATAT+TGG | - | chr3.1:85630443-85630462 | None:intergenic | 35.0% | |
| CCACTTAGTTGAAAAAAGCT+TGG | + | chr3.1:85628097-85628116 | MS.gene072952:intron | 35.0% | |
| CTAACCTACTCTCTTTACTA+GGG | - | chr3.1:85628475-85628494 | None:intergenic | 35.0% | |
| CTAGTCAACATTTCATACCA+TGG | - | chr3.1:85631254-85631273 | None:intergenic | 35.0% | |
| GATCTGCAACTTAATACCAA+AGG | + | chr3.1:85631411-85631430 | MS.gene072952:CDS | 35.0% | |
| TATTCCTCAGAAACCTGAAA+AGG | - | chr3.1:85629993-85630012 | None:intergenic | 35.0% | |
| TCAGAAACCTGAAAAGGAAT+AGG | - | chr3.1:85629987-85630006 | None:intergenic | 35.0% | |
| TCTAACCTACTCTCTTTACT+AGG | - | chr3.1:85628476-85628495 | None:intergenic | 35.0% | |
| TCTCTTCACCTCTTAACTAT+TGG | - | chr3.1:85628510-85628529 | None:intergenic | 35.0% | |
| TGCAAAATGAAATATGCTCC+TGG | - | chr3.1:85629467-85629486 | None:intergenic | 35.0% | |
| TTACTGTGAACCTCATTGAT+CGG | + | chr3.1:85630039-85630058 | MS.gene072952:CDS | 35.0% | |
| TTCTCCATGTAATTGGTTGA+TGG | - | chr3.1:85629642-85629661 | None:intergenic | 35.0% | |
| TTGGACATACAATGTTCAGT+TGG | - | chr3.1:85628838-85628857 | None:intergenic | 35.0% | |
| TTGGTTAGAATCACTTCTTG+AGG | - | chr3.1:85630916-85630935 | None:intergenic | 35.0% | |
| TTGTAGAATCTCATCTTAGG+TGG | + | chr3.1:85628425-85628444 | MS.gene072952:intron | 35.0% | |
| ! | AGATGCACTTCTTTTCTTCA+TGG | + | chr3.1:85630458-85630477 | MS.gene072952:intron | 35.0% |
| ! | ATAAACCTTTGTTTGGGACT+TGG | - | chr3.1:85628940-85628959 | None:intergenic | 35.0% |
| ! | CTCAGAAGAAACAACCTTTT+TGG | - | chr3.1:85627783-85627802 | None:intergenic | 35.0% |
| ! | TAGTATGTGTTTGGTTTCGT+GGG | + | chr3.1:85630802-85630821 | MS.gene072952:intron | 35.0% |
| ! | TTACCATCAAGCTTTTGTTG+TGG | + | chr3.1:85629946-85629965 | MS.gene072952:intron | 35.0% |
| ! | TTAGTATGTGTTTGGTTTCG+TGG | + | chr3.1:85630801-85630820 | MS.gene072952:intron | 35.0% |
| ! | TTATCCATTTTACAGGCCAA+AGG | + | chr3.1:85628655-85628674 | MS.gene072952:intron | 35.0% |
| ! | TTGTGCTGATGAAACTTCAA+TGG | - | chr3.1:85628722-85628741 | None:intergenic | 35.0% |
| !! | AAGTGGTTCTAGACACAAAA+TGG | + | chr3.1:85630838-85630857 | MS.gene072952:intron | 35.0% |
| !! | AATTCTGATTGATTGGCTTG+TGG | + | chr3.1:85629695-85629714 | MS.gene072952:CDS | 35.0% |
| !! | CTGGATTATTTTATGCTGAC+AGG | + | chr3.1:85631040-85631059 | MS.gene072952:intron | 35.0% |
| !! | TTTGTGTCTAGAACCACTTT+TGG | - | chr3.1:85630837-85630856 | None:intergenic | 35.0% |
| !! | TTTTGTTGTGGCTTTGCTAA+AGG | + | chr3.1:85629958-85629977 | MS.gene072952:intron | 35.0% |
| !!! | CCAAGCTTTTTTCAACTAAG+TGG | - | chr3.1:85628100-85628119 | None:intergenic | 35.0% |
| !!! | CTGAGAAATGTTTTGGTTGT+GGG | - | chr3.1:85630619-85630638 | None:intergenic | 35.0% |
| !!! | TATTCCTTTTCAGGTTTCTG+AGG | + | chr3.1:85629986-85630005 | MS.gene072952:intron | 35.0% |
| !!! | TTTTTTCAACTAAGTGGGGT+CGG | - | chr3.1:85628094-85628113 | None:intergenic | 35.0% |
| AAAACCAGTTGTTCTTGCAC+TGG | + | chr3.1:85631386-85631405 | MS.gene072952:CDS | 40.0% | |
| AACCAAAGTTACTGCAGCAA+TGG | - | chr3.1:85628809-85628828 | None:intergenic | 40.0% | |
| AACTCCTTTGGCCTGTAAAA+TGG | - | chr3.1:85628662-85628681 | None:intergenic | 40.0% | |
| AAGAGCAACAGCTTCCAAAA+AGG | + | chr3.1:85627766-85627785 | MS.gene072952:CDS | 40.0% | |
| AAGCCACAACAAAAGCTTGA+TGG | - | chr3.1:85629952-85629971 | None:intergenic | 40.0% | |
| AAGCCACTAACTCACTAGAA+AGG | + | chr3.1:85629081-85629100 | MS.gene072952:intron | 40.0% | |
| AAGTCAGCTGAAATTGCTAG+AGG | + | chr3.1:85628309-85628328 | MS.gene072952:intron | 40.0% | |
| AATTACCAGATCAAGGGCAA+AGG | + | chr3.1:85627709-85627728 | MS.gene072952:CDS | 40.0% | |
| ACAGTAAACTGAGGATCGAA+AGG | - | chr3.1:85630278-85630297 | None:intergenic | 40.0% | |
| ACGGGAACTTATGTTTAACC+AGG | - | chr3.1:85630158-85630177 | None:intergenic | 40.0% | |
| AGCAGCACAATCTTCTTACA+AGG | + | chr3.1:85630744-85630763 | MS.gene072952:CDS | 40.0% | |
| AGTCAGCTGAAATTGCTAGA+GGG | + | chr3.1:85628310-85628329 | MS.gene072952:intron | 40.0% | |
| ATCATCTCCACAGTAAACTG+AGG | - | chr3.1:85630287-85630306 | None:intergenic | 40.0% | |
| ATGCAAGAATGTGTGAACTC+TGG | + | chr3.1:85628898-85628917 | MS.gene072952:CDS | 40.0% | |
| ATGTTCCTCACCGTAAAAGA+AGG | + | chr3.1:85627828-85627847 | MS.gene072952:CDS | 40.0% | |
| CACTCAGAATTACCAGATCA+AGG | + | chr3.1:85627702-85627721 | MS.gene072952:CDS | 40.0% | |
| CAGATAACTGAAAACGCAGA+AGG | - | chr3.1:85630594-85630613 | None:intergenic | 40.0% | |
| CATTGCAAAATCAAACACGC+TGG | + | chr3.1:85631021-85631040 | MS.gene072952:intron | 40.0% | |
| CCACAACCAAAACATTTCTC+AGG | + | chr3.1:85630617-85630636 | MS.gene072952:CDS | 40.0% | |
| CTGCAACTTCTCCATGTAAT+TGG | - | chr3.1:85629649-85629668 | None:intergenic | 40.0% | |
| CTTGATCTGGTAATTCTGAG+TGG | - | chr3.1:85627704-85627723 | None:intergenic | 40.0% | |
| GAAGCAAAATTCTTCACTCG+AGG | - | chr3.1:85630512-85630531 | None:intergenic | 40.0% | |
| GAATTCTAACTCTGAGCAAC+GGG | - | chr3.1:85630176-85630195 | None:intergenic | 40.0% | |
| GATCAATGAGGTTCACAGTA+AGG | - | chr3.1:85630040-85630059 | None:intergenic | 40.0% | |
| GTTGAAGAAACCGATCAATG+AGG | - | chr3.1:85630052-85630071 | None:intergenic | 40.0% | |
| TATCGATGTCTACAAAGGTC+AGG | - | chr3.1:85629210-85629229 | None:intergenic | 40.0% | |
| TGAAGTTTCATCAGCACAAG+AGG | + | chr3.1:85628723-85628742 | MS.gene072952:CDS | 40.0% | |
| TGCGTGGAATTCTGATTGAT+TGG | + | chr3.1:85629688-85629707 | MS.gene072952:CDS | 40.0% | |
| TGGGTAGAGATAACCAAAAG+TGG | + | chr3.1:85630821-85630840 | MS.gene072952:intron | 40.0% | |
| TGTTCCTCACCGTAAAAGAA+GGG | + | chr3.1:85627829-85627848 | MS.gene072952:CDS | 40.0% | |
| TTTCGATCCTCAGTTTACTG+TGG | + | chr3.1:85630277-85630296 | MS.gene072952:intron | 40.0% | |
| TTTGCTCGACCAAGTTCAAT+TGG | - | chr3.1:85628255-85628274 | None:intergenic | 40.0% | |
| ! | AGATCAAGGGCAAAGGTTTT+GGG | + | chr3.1:85627716-85627735 | MS.gene072952:CDS | 40.0% |
| ! | GCTCTGCTAAATAATTTGCC+AGG | - | chr3.1:85631131-85631150 | None:intergenic | 40.0% |
| ! | GGTTTCTGAGGAATATAAGC+TGG | + | chr3.1:85629998-85630017 | MS.gene072952:intron | 40.0% |
| ! | TCACCTTTCTAGTGAGTTAG+TGG | - | chr3.1:85629087-85629106 | None:intergenic | 40.0% |
| ! | TGTAAGAAGATTGTGCTGCT+TGG | - | chr3.1:85630744-85630763 | None:intergenic | 40.0% |
| ! | TTCCCTTCATTTTCCGAAGA+GGG | - | chr3.1:85627746-85627765 | None:intergenic | 40.0% |
| ! | TTTCCCTTCATTTTCCGAAG+AGG | - | chr3.1:85627747-85627766 | None:intergenic | 40.0% |
| !! | AAGGTGTCCTATTCCTTTTC+AGG | + | chr3.1:85629977-85629996 | MS.gene072952:intron | 40.0% |
| !! | ACAGTAAGGTAAAGAGTGTC+TGG | - | chr3.1:85630026-85630045 | None:intergenic | 40.0% |
| !! | TAGCTCTGAAGCTTTGTAGT+TGG | - | chr3.1:85631367-85631386 | None:intergenic | 40.0% |
| !!! | CCTGAGAAATGTTTTGGTTG+TGG | - | chr3.1:85630620-85630639 | None:intergenic | 40.0% |
| ACAGTTTCTACCTTCTCGTG+TGG | + | chr3.1:85631177-85631196 | MS.gene072952:CDS | 45.0% | |
| AGCAAGTAACACCAAGCAAC+TGG | - | chr3.1:85630099-85630118 | None:intergenic | 45.0% | |
| AGGAATTCCAGTTCAGCAAG+AGG | - | chr3.1:85631111-85631130 | None:intergenic | 45.0% | |
| ATCAGAATTCCACGCATGCT+TGG | - | chr3.1:85629684-85629703 | None:intergenic | 45.0% | |
| CAAAACCTTTGCCCTTGATC+TGG | - | chr3.1:85627717-85627736 | None:intergenic | 45.0% | |
| CACCATTGCTGCAGTAACTT+TGG | + | chr3.1:85628804-85628823 | MS.gene072952:CDS | 45.0% | |
| GACCCTCTTCGGAAAATGAA+GGG | + | chr3.1:85627741-85627760 | MS.gene072952:CDS | 45.0% | |
| GAGACCCTAGTAAAGAGAGT+AGG | + | chr3.1:85628468-85628487 | MS.gene072952:intron | 45.0% | |
| GATATTTCTCCAAGCATGCG+TGG | + | chr3.1:85629672-85629691 | MS.gene072952:CDS | 45.0% | |
| GTCAGCTGAAATTGCTAGAG+GGG | + | chr3.1:85628311-85628330 | MS.gene072952:intron | 45.0% | |
| GTGTGGTGTCTGTCATAACA+TGG | - | chr3.1:85628873-85628892 | None:intergenic | 45.0% | |
| TCAACCACTCAGAACATCCA+TGG | + | chr3.1:85631234-85631253 | MS.gene072952:CDS | 45.0% | |
| TCTTCCAGTGCAAGAACAAC+TGG | - | chr3.1:85631393-85631412 | None:intergenic | 45.0% | |
| TCTTGCTGAACTGGAATTCC+TGG | + | chr3.1:85631110-85631129 | MS.gene072952:intron | 45.0% | |
| TTAGGTGGTAGAGACATGTG+TGG | + | chr3.1:85628440-85628459 | MS.gene072952:intron | 45.0% | |
| ! | ATGGATGTTCTGAGTGGTTG+AGG | - | chr3.1:85631235-85631254 | None:intergenic | 45.0% |
| ! | CAGATCAAGGGCAAAGGTTT+TGG | + | chr3.1:85627715-85627734 | MS.gene072952:CDS | 45.0% |
| ! | CATACCATGGATGTTCTGAG+TGG | - | chr3.1:85631241-85631260 | None:intergenic | 45.0% |
| ! | CTTTTACGGTGAGGAACATC+AGG | - | chr3.1:85627827-85627846 | None:intergenic | 45.0% |
| ! | TAAGCCCTGCCCTTCTTTTA+CGG | - | chr3.1:85627841-85627860 | None:intergenic | 45.0% |
| ! | TGGATGTTCTGAGTGGTTGA+GGG | - | chr3.1:85631234-85631253 | None:intergenic | 45.0% |
| !! | GCAAGTATTCTAGGATAGCC+AGG | + | chr3.1:85629446-85629465 | MS.gene072952:intron | 45.0% |
| !! | TCTGATTGATTGGCTTGTGG+AGG | + | chr3.1:85629698-85629717 | MS.gene072952:CDS | 45.0% |
| !! | ATTATTATTACTTTATAATA+GGG | + | chr3.1:85629390-85629409 | MS.gene072952:intron | 5.0% |
| !! | TATTATTATTACTTTATAAT+AGG | + | chr3.1:85629389-85629408 | MS.gene072952:intron | 5.0% |
| AAACACAGGCTCCAGTTGCT+TGG | + | chr3.1:85630085-85630104 | MS.gene072952:intron | 50.0% | |
| ACAGGTTCCTCTTGCTGAAC+TGG | + | chr3.1:85631101-85631120 | MS.gene072952:intron | 50.0% | |
| CAACAAAGTTCGAGTCACCG+AGG | + | chr3.1:85629279-85629298 | MS.gene072952:CDS | 50.0% | |
| CCTCTCCAAGTCCCAAACAA+AGG | + | chr3.1:85628932-85628951 | MS.gene072952:intron | 50.0% | |
| CTCACCGTAAAAGAAGGGCA+GGG | + | chr3.1:85627834-85627853 | MS.gene072952:CDS | 50.0% | |
| CTGCTGTATTCCTTGCCAGA+TGG | + | chr3.1:85631206-85631225 | MS.gene072952:CDS | 50.0% | |
| GAGTGGACGCTCTTCATCTT+TGG | - | chr3.1:85627687-85627706 | None:intergenic | 50.0% | |
| GGACCCTCTTCGGAAAATGA+AGG | + | chr3.1:85627740-85627759 | MS.gene072952:CDS | 50.0% | |
| TTGTGAGAAGGTAGGAGCCT+CGG | + | chr3.1:85629180-85629199 | MS.gene072952:CDS | 50.0% | |
| ! | CCTTTGTTTGGGACTTGGAG+AGG | - | chr3.1:85628935-85628954 | None:intergenic | 50.0% |
| ! | GGATGTTCTGAGTGGTTGAG+GGG | - | chr3.1:85631233-85631252 | None:intergenic | 50.0% |
| !!! | TCAAGGGCAAAGGTTTTGGG+AGG | + | chr3.1:85627719-85627738 | MS.gene072952:CDS | 50.0% |
| CCTCACCGTAAAAGAAGGGC+AGG | + | chr3.1:85627833-85627852 | MS.gene072952:CDS | 55.0% | |
| GCTTGTGGAGGTCAGTCTTG+TGG | + | chr3.1:85629710-85629729 | MS.gene072952:intron | 55.0% | |
| TACAAAGGTCAGGCGATCCG+AGG | - | chr3.1:85629200-85629219 | None:intergenic | 55.0% | |
| ! | CCTGCCCTTCTTTTACGGTG+AGG | - | chr3.1:85627836-85627855 | None:intergenic | 55.0% |
| ! | GGAGGTCAGTCTTGTGGCAT+TGG | + | chr3.1:85629716-85629735 | MS.gene072952:intron | 55.0% |
| !!! | GGTTTTGGGAGGACCCTCTT+CGG | + | chr3.1:85627730-85627749 | MS.gene072952:CDS | 55.0% |
| ACTAAGTGGGGTCGGCTACC+AGG | - | chr3.1:85628086-85628105 | None:intergenic | 60.0% | |
| GAGTGGTTGAGGGGTCCATC+TGG | - | chr3.1:85631224-85631243 | None:intergenic | 60.0% | |
| GCAGAAGCAGCCACACGAGA+AGG | - | chr3.1:85631190-85631209 | None:intergenic | 60.0% | |
| GTTGAGGGGTCCATCTGGCA+AGG | - | chr3.1:85631219-85631238 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 85627656 | 85631435 | 85627656 | ID=MS.gene072952 |
| chr3.1 | mRNA | 85627656 | 85631435 | 85627656 | ID=MS.gene072952.t1;Parent=MS.gene072952 |
| chr3.1 | exon | 85627656 | 85627922 | 85627656 | ID=MS.gene072952.t1.exon1;Parent=MS.gene072952.t1 |
| chr3.1 | CDS | 85627656 | 85627922 | 85627656 | ID=cds.MS.gene072952.t1;Parent=MS.gene072952.t1 |
| chr3.1 | exon | 85628670 | 85628940 | 85628670 | ID=MS.gene072952.t1.exon2;Parent=MS.gene072952.t1 |
| chr3.1 | CDS | 85628670 | 85628940 | 85628670 | ID=cds.MS.gene072952.t1;Parent=MS.gene072952.t1 |
| chr3.1 | exon | 85629167 | 85629300 | 85629167 | ID=MS.gene072952.t1.exon3;Parent=MS.gene072952.t1 |
| chr3.1 | CDS | 85629167 | 85629300 | 85629167 | ID=cds.MS.gene072952.t1;Parent=MS.gene072952.t1 |
| chr3.1 | exon | 85629627 | 85629719 | 85629627 | ID=MS.gene072952.t1.exon4;Parent=MS.gene072952.t1 |
| chr3.1 | CDS | 85629627 | 85629719 | 85629627 | ID=cds.MS.gene072952.t1;Parent=MS.gene072952.t1 |
| chr3.1 | exon | 85629999 | 85630073 | 85629999 | ID=MS.gene072952.t1.exon5;Parent=MS.gene072952.t1 |
| chr3.1 | CDS | 85629999 | 85630073 | 85629999 | ID=cds.MS.gene072952.t1;Parent=MS.gene072952.t1 |
| chr3.1 | exon | 85630488 | 85630526 | 85630488 | ID=MS.gene072952.t1.exon6;Parent=MS.gene072952.t1 |
| chr3.1 | CDS | 85630488 | 85630526 | 85630488 | ID=cds.MS.gene072952.t1;Parent=MS.gene072952.t1 |
| chr3.1 | exon | 85630562 | 85630638 | 85630562 | ID=MS.gene072952.t1.exon7;Parent=MS.gene072952.t1 |
| chr3.1 | CDS | 85630562 | 85630638 | 85630562 | ID=cds.MS.gene072952.t1;Parent=MS.gene072952.t1 |
| chr3.1 | exon | 85630732 | 85630765 | 85630732 | ID=MS.gene072952.t1.exon8;Parent=MS.gene072952.t1 |
| chr3.1 | CDS | 85630732 | 85630765 | 85630732 | ID=cds.MS.gene072952.t1;Parent=MS.gene072952.t1 |
| chr3.1 | exon | 85631145 | 85631255 | 85631145 | ID=MS.gene072952.t1.exon9;Parent=MS.gene072952.t1 |
| chr3.1 | CDS | 85631145 | 85631255 | 85631145 | ID=cds.MS.gene072952.t1;Parent=MS.gene072952.t1 |
| chr3.1 | exon | 85631342 | 85631435 | 85631342 | ID=MS.gene072952.t1.exon10;Parent=MS.gene072952.t1 |
| chr3.1 | CDS | 85631342 | 85631435 | 85631342 | ID=cds.MS.gene072952.t1;Parent=MS.gene072952.t1 |
| Gene Sequence |
| Protein sequence |
