Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36563.t1 | XP_024629011.1 | 100 | 480 | 0 | 0 | 45 | 524 | 1 | 480 | 7.40E-277 | 962.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36563.t1 | Q949Y0 | 76.4 | 483 | 110 | 2 | 45 | 524 | 1 | 482 | 4.5e-214 | 745.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36563.t1 | A0A396GGA4 | 100.0 | 480 | 0 | 0 | 45 | 524 | 1 | 480 | 5.4e-277 | 962.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056896 | MS.gene36563 | PPI |
| MS.gene24253 | MS.gene36563 | PPI |
| MS.gene002648 | MS.gene36563 | PPI |
| MS.gene06645 | MS.gene36563 | PPI |
| MS.gene26985 | MS.gene36563 | PPI |
| MS.gene81765 | MS.gene36563 | PPI |
| MS.gene90698 | MS.gene36563 | PPI |
| MS.gene29256 | MS.gene36563 | PPI |
| MS.gene36563 | MS.gene27289 | PPI |
| MS.gene044013 | MS.gene36563 | PPI |
| MS.gene062770 | MS.gene36563 | PPI |
| MS.gene007189 | MS.gene36563 | PPI |
| MS.gene057206 | MS.gene36563 | PPI |
| MS.gene004328 | MS.gene36563 | PPI |
| MS.gene36563 | MS.gene049599 | PPI |
| MS.gene24252 | MS.gene36563 | PPI |
| MS.gene24375 | MS.gene36563 | PPI |
| MS.gene06859 | MS.gene36563 | PPI |
| MS.gene67099 | MS.gene36563 | PPI |
| MS.gene05119 | MS.gene36563 | PPI |
| MS.gene050290 | MS.gene36563 | PPI |
| MS.gene53875 | MS.gene36563 | PPI |
| MS.gene24255 | MS.gene36563 | PPI |
| MS.gene013534 | MS.gene36563 | PPI |
| MS.gene034846 | MS.gene36563 | PPI |
| MS.gene36563 | MS.gene050252 | PPI |
| MS.gene008431 | MS.gene36563 | PPI |
| MS.gene27247 | MS.gene36563 | PPI |
| MS.gene24706 | MS.gene36563 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36563.t1 | MTR_8g015660 | 100.000 | 477 | 0 | 0 | 48 | 524 | 78 | 554 | 0.0 | 999 |
| MS.gene36563.t1 | MTR_3g100480 | 27.572 | 243 | 152 | 8 | 149 | 379 | 585 | 815 | 7.89e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36563.t1 | AT1G51710 | 76.398 | 483 | 110 | 2 | 45 | 524 | 1 | 482 | 0.0 | 750 |
| MS.gene36563.t1 | AT3G21280 | 75.676 | 481 | 114 | 3 | 44 | 524 | 55 | 532 | 0.0 | 744 |
| MS.gene36563.t1 | AT3G21280 | 75.417 | 480 | 115 | 3 | 45 | 524 | 1 | 477 | 0.0 | 741 |
| MS.gene36563.t1 | AT1G51710 | 76.037 | 434 | 100 | 2 | 94 | 524 | 11 | 443 | 0.0 | 671 |
Find 109 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCTTCCACCATGATTAA+TGG | 0.190178 | 8.4:-75718217 | MS.gene36563:intron |
| ATCAAAGCCGACTTCAATTC+TGG | 0.197702 | 8.4:+75715925 | None:intergenic |
| CTGTGGCACCTATGCAATTT+TGG | 0.236161 | 8.4:-75715704 | MS.gene36563:CDS |
| GGAAAAGGCTTCTGCTGCTT+TGG | 0.253240 | 8.4:-75711703 | MS.gene36563:CDS |
| CTCGCAAAATCTTAGCCTTT+TGG | 0.261860 | 8.4:+75710411 | None:intergenic |
| TCATCTTGAACTCTAGGTTT+TGG | 0.265590 | 8.4:+75708590 | None:intergenic |
| TTCAGTTTGTCCGTTTCTTT+TGG | 0.281449 | 8.4:-75710448 | MS.gene36563:CDS |
| GTTATCAGTTACTCACATTC+AGG | 0.296836 | 8.4:-75715813 | MS.gene36563:intron |
| AGCTTTCTTCATTGCTCTCT+TGG | 0.309856 | 8.4:+75713035 | None:intergenic |
| AGTTGAGAAGAGGTTGTTCT+TGG | 0.329025 | 8.4:+75718276 | None:intergenic |
| GAAAAGGCTTCTGCTGCTTT+GGG | 0.331458 | 8.4:-75711702 | MS.gene36563:CDS |
| TCCTGAAAGACAAAAGATTA+TGG | 0.342483 | 8.4:-75717219 | MS.gene36563:CDS |
| GCAGCTACTTGTTCTTCTTC+AGG | 0.354152 | 8.4:+75716815 | None:intergenic |
| ATCTATAAGTGCGTGTGGTT+TGG | 0.354701 | 8.4:-75718329 | MS.gene36563:CDS |
| ATTCAGGACATTATGTTGGC+TGG | 0.356023 | 8.4:-75708742 | MS.gene36563:CDS |
| AAACCACACGCACTTATAGA+TGG | 0.358049 | 8.4:+75718331 | None:intergenic |
| ATCATCTGTGTTTAGGTGAT+TGG | 0.361081 | 8.4:-75708313 | MS.gene36563:intron |
| GATGACATCACTAGACTATC+TGG | 0.373755 | 8.4:-75708572 | MS.gene36563:CDS |
| GTTACTTGTTGGCAGGGAAA+TGG | 0.387441 | 8.4:-75708634 | MS.gene36563:intron |
| AACAAAGTGGATACCTTTCT+AGG | 0.395937 | 8.4:+75710205 | None:intergenic |
| CAATTTGGCCAGCTGCATAA+TGG | 0.409917 | 8.4:-75714557 | MS.gene36563:CDS |
| AATGACTGGGGTTTATGATT+TGG | 0.412670 | 8.4:-75708798 | MS.gene36563:CDS |
| GATGCTGATTGGGCAAAGTT+AGG | 0.423425 | 8.4:-75717021 | MS.gene36563:CDS |
| TTAATTTAGGGGTCATCAAA+TGG | 0.428623 | 8.4:-75708970 | MS.gene36563:intron |
| AAGAGAATAATAACCTTGGC+AGG | 0.430651 | 8.4:+75711640 | None:intergenic |
| GGGTCAAAAGCTAATGATGA+TGG | 0.432476 | 8.4:-75716897 | MS.gene36563:CDS |
| TAATGGAGTGTTCATGCAAC+AGG | 0.437555 | 8.4:-75714540 | MS.gene36563:intron |
| TTTAAAATCAGAGTTGGAAA+AGG | 0.450330 | 8.4:-75711718 | MS.gene36563:CDS |
| GTGATGTCATCTTGAACTCT+AGG | 0.451199 | 8.4:+75708584 | None:intergenic |
| CTCTAAGATCCCCTGGATCT+AGG | 0.452923 | 8.4:-75714383 | MS.gene36563:intron |
| CAATGCAGGATGATGCTGAT+TGG | 0.460308 | 8.4:-75717032 | MS.gene36563:intron |
| TCTGCATTTGCCAGGTATTG+AGG | 0.461481 | 8.4:-75714592 | MS.gene36563:intron |
| CTCCAGTCAGATCAAACAAT+TGG | 0.463837 | 8.4:+75717246 | None:intergenic |
| GGTTGTTCTTGGCTTGAAGA+AGG | 0.464254 | 8.4:+75718287 | None:intergenic |
| GAAGAAAGTTACCTAGATCC+AGG | 0.470982 | 8.4:+75714372 | None:intergenic |
| AAGGGTAGGAGTGCTGATTC+AGG | 0.475040 | 8.4:-75708758 | MS.gene36563:CDS |
| GGAGCCATCTGTTGCTCCAA+TGG | 0.476196 | 8.4:-75708941 | MS.gene36563:CDS |
| AACAGGATGCTGAAGAATGC+TGG | 0.479110 | 8.4:-75714434 | MS.gene36563:intron |
| ATCAGCACTCCTACCCTTGT+GGG | 0.484437 | 8.4:+75708763 | None:intergenic |
| GCAGGGTTTAAAATCAGAGT+TGG | 0.484857 | 8.4:-75711724 | MS.gene36563:intron |
| ATTCCCTCTTCCAAAAGAAA+CGG | 0.501115 | 8.4:+75710438 | None:intergenic |
| GTGTTTAGGTGATTGGCATA+TGG | 0.504677 | 8.4:-75708306 | MS.gene36563:intron |
| TCAAAGCCGACTTCAATTCT+GGG | 0.506445 | 8.4:+75715926 | None:intergenic |
| TCACAATCTCTAAGATCCCC+TGG | 0.506632 | 8.4:-75714390 | MS.gene36563:CDS |
| TTTCTGCAGTGAGTGTTAAG+TGG | 0.507754 | 8.4:-75717331 | MS.gene36563:intron |
| AGAAATCGAACCATTAATCA+TGG | 0.509118 | 8.4:+75718207 | None:intergenic |
| GTTGTTCTTGGCTTGAAGAA+GGG | 0.509936 | 8.4:+75718288 | None:intergenic |
| GAAATTAGAAGCTCCTAGAA+AGG | 0.510977 | 8.4:-75710218 | MS.gene36563:intron |
| AATGCAGGATGATGCTGATT+GGG | 0.515628 | 8.4:-75717031 | MS.gene36563:intron |
| TTGTTCTTGGCTTGAAGAAG+GGG | 0.518818 | 8.4:+75718289 | None:intergenic |
| TTCAGGACATTATGTTGGCT+GGG | 0.518824 | 8.4:-75708741 | MS.gene36563:CDS |
| GAGTGAGAAAAGTTGAGAAG+AGG | 0.520392 | 8.4:+75718266 | None:intergenic |
| TGCCAATTGTTTGATCTGAC+TGG | 0.522079 | 8.4:-75717248 | MS.gene36563:CDS |
| AATCAGCACTCCTACCCTTG+TGG | 0.523852 | 8.4:+75708762 | None:intergenic |
| GGTTTACCTCCTGCGATATG+TGG | 0.524877 | 8.4:+75712981 | None:intergenic |
| TTGGCATAGAACTTAATAGC+AGG | 0.531618 | 8.4:-75714038 | MS.gene36563:intron |
| GTGGGACAGGGACATACTGC+TGG | 0.532272 | 8.4:-75716009 | MS.gene36563:intron |
| AAGACAAAAGATTATGGTCA+AGG | 0.535017 | 8.4:-75717213 | MS.gene36563:CDS |
| AGTAGATTATCCTCTGGAGT+TGG | 0.535111 | 8.4:-75710275 | MS.gene36563:CDS |
| TGATAAAAGTGTCAAGGCTG+TGG | 0.537101 | 8.4:-75715721 | MS.gene36563:CDS |
| ACTTCAATTCTGGGACAGAA+TGG | 0.537272 | 8.4:+75715935 | None:intergenic |
| GAAGAGGGAATCAAACCAAA+AGG | 0.537832 | 8.4:-75710426 | MS.gene36563:CDS |
| TGAAAATACTGATGCTGTGA+AGG | 0.539297 | 8.4:-75714067 | MS.gene36563:CDS |
| TGAACACTCCATTATGCAGC+TGG | 0.540413 | 8.4:+75714549 | None:intergenic |
| AGTGAGTGTTAAGTGGCAAA+AGG | 0.543381 | 8.4:-75717324 | MS.gene36563:CDS |
| TCCTCCATTGGAGCAACAGA+TGG | 0.547369 | 8.4:+75708937 | None:intergenic |
| ATTATGAAATCTCCAGAGAA+GGG | 0.549279 | 8.4:-75716860 | MS.gene36563:CDS |
| TTATGCAGCTGGCCAAATTG+AGG | 0.549295 | 8.4:+75714560 | None:intergenic |
| TAGGGGTCATCAAATGGAGG+AGG | 0.557464 | 8.4:-75708964 | MS.gene36563:CDS |
| ACTTAAATGCCACATATCGC+AGG | 0.558324 | 8.4:-75712990 | MS.gene36563:CDS |
| AAGAAAGTTACCTAGATCCA+GGG | 0.559913 | 8.4:+75714373 | None:intergenic |
| CGCGCATCAATGCCCTGCCA+AGG | 0.566093 | 8.4:-75711653 | MS.gene36563:intron |
| AATTATGAAATCTCCAGAGA+AGG | 0.574663 | 8.4:-75716861 | MS.gene36563:CDS |
| GGCATATATAATCATGTACA+AGG | 0.580839 | 8.4:-75708285 | MS.gene36563:CDS |
| AACCACACGCACTTATAGAT+GGG | 0.581923 | 8.4:+75718332 | None:intergenic |
| TCAGAAAGTAGATTATCCTC+TGG | 0.583259 | 8.4:-75710281 | MS.gene36563:intron |
| GAATAAGTCACGGGTTGCAA+CGG | 0.585557 | 8.4:+75715752 | None:intergenic |
| TGAGAAAAGCTCTGTTCCCA+AGG | 0.585888 | 8.4:-75710042 | MS.gene36563:CDS |
| TATACCATCCAAAATTGCAT+AGG | 0.592018 | 8.4:+75715696 | None:intergenic |
| AGACAAAAGATTATGGTCAA+GGG | 0.594358 | 8.4:-75717212 | MS.gene36563:CDS |
| GCTGATTCAGGACATTATGT+TGG | 0.595896 | 8.4:-75708746 | MS.gene36563:CDS |
| CAAGCTCGCTGAATAAGTCA+CGG | 0.595928 | 8.4:+75715742 | None:intergenic |
| GGCTGGGTCAAGCAAGAGAA+CGG | 0.597807 | 8.4:-75708725 | MS.gene36563:intron |
| GGTCAAAAGCTAATGATGAT+GGG | 0.606310 | 8.4:-75716896 | MS.gene36563:CDS |
| ATCACTAGACTATCTGGAGG+AGG | 0.606479 | 8.4:-75708566 | MS.gene36563:intron |
| TTCTGTCCCAGAATTGAAGT+CGG | 0.608208 | 8.4:-75715932 | MS.gene36563:CDS |
| CTGTATTGACCCACAAGGGT+AGG | 0.611955 | 8.4:-75708772 | MS.gene36563:CDS |
| GCCATCTGTTGCTCCAATGG+AGG | 0.618123 | 8.4:-75708938 | MS.gene36563:CDS |
| AGAGAATAATAACCTTGGCA+GGG | 0.620428 | 8.4:+75711641 | None:intergenic |
| CGAGCTTGATAAAAGTGTCA+AGG | 0.622464 | 8.4:-75715727 | MS.gene36563:CDS |
| AAGCTCGCTGAATAAGTCAC+GGG | 0.622507 | 8.4:+75715743 | None:intergenic |
| GGCAAAGTTAGGAGTGAAAG+CGG | 0.624183 | 8.4:-75717010 | MS.gene36563:intron |
| AGGGGTCATCAAATGGAGGA+GGG | 0.627869 | 8.4:-75708963 | MS.gene36563:CDS |
| TCTGTTGCTCCAATGGAGGA+AGG | 0.637913 | 8.4:-75708934 | MS.gene36563:intron |
| ATTTAGGGGTCATCAAATGG+AGG | 0.638714 | 8.4:-75708967 | MS.gene36563:intron |
| AATCGAACCATTAATCATGG+TGG | 0.640991 | 8.4:+75718210 | None:intergenic |
| GACCCATCTATAAGTGCGTG+TGG | 0.645197 | 8.4:-75718334 | MS.gene36563:CDS |
| CAAAAGATTATGGTCAAGGG+TGG | 0.645610 | 8.4:-75717209 | MS.gene36563:CDS |
| CAGTTCCTAAGAGATGAAGA+AGG | 0.648671 | 8.4:-75710089 | MS.gene36563:CDS |
| TCAATTCTGGGACAGAATGG+AGG | 0.654979 | 8.4:+75715938 | None:intergenic |
| GGTTGCTGTATTGACCCACA+AGG | 0.664211 | 8.4:-75708777 | MS.gene36563:CDS |
| TCGTAAACATCCAACTCCAG+AGG | 0.671783 | 8.4:+75710265 | None:intergenic |
| GGGGTCATCAAATGGAGGAG+GGG | 0.682211 | 8.4:-75708962 | MS.gene36563:CDS |
| GAGGTAAACCATTTGCACGA+AGG | 0.687364 | 8.4:-75712968 | MS.gene36563:CDS |
| AGAAAGTTACCTAGATCCAG+GGG | 0.703050 | 8.4:+75714374 | None:intergenic |
| TAAATGCCACATATCGCAGG+AGG | 0.705771 | 8.4:-75712987 | MS.gene36563:CDS |
| GACATCACTAGACTATCTGG+AGG | 0.706557 | 8.4:-75708569 | MS.gene36563:CDS |
| GTTGCTGTATTGACCCACAA+GGG | 0.727289 | 8.4:-75708776 | MS.gene36563:CDS |
| AAAAGAAACACAAATGACTG+GGG | 0.734411 | 8.4:-75708810 | MS.gene36563:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 75708265 | 75718359 | 75708265 | ID=MS.gene36563 |
| chr8.4 | mRNA | 75708265 | 75718359 | 75708265 | ID=MS.gene36563.t1;Parent=MS.gene36563 |
| chr8.4 | exon | 75718218 | 75718359 | 75718218 | ID=MS.gene36563.t1.exon1;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75718218 | 75718359 | 75718218 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75717199 | 75717344 | 75717199 | ID=MS.gene36563.t1.exon2;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75717199 | 75717344 | 75717199 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75717011 | 75717046 | 75717011 | ID=MS.gene36563.t1.exon3;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75717011 | 75717046 | 75717011 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75716811 | 75716918 | 75716811 | ID=MS.gene36563.t1.exon4;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75716811 | 75716918 | 75716811 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75715922 | 75716022 | 75715922 | ID=MS.gene36563.t1.exon5;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75715922 | 75716022 | 75715922 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75715701 | 75715827 | 75715701 | ID=MS.gene36563.t1.exon6;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75715701 | 75715827 | 75715701 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75714541 | 75714600 | 75714541 | ID=MS.gene36563.t1.exon7;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75714541 | 75714600 | 75714541 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75714384 | 75714451 | 75714384 | ID=MS.gene36563.t1.exon8;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75714384 | 75714451 | 75714384 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75714039 | 75714089 | 75714039 | ID=MS.gene36563.t1.exon9;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75714039 | 75714089 | 75714039 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75712958 | 75713066 | 75712958 | ID=MS.gene36563.t1.exon10;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75712958 | 75713066 | 75712958 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75711654 | 75711742 | 75711654 | ID=MS.gene36563.t1.exon11;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75711654 | 75711742 | 75711654 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75710412 | 75710481 | 75710412 | ID=MS.gene36563.t1.exon12;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75710412 | 75710481 | 75710412 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75710219 | 75710299 | 75710219 | ID=MS.gene36563.t1.exon13;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75710219 | 75710299 | 75710219 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75710013 | 75710108 | 75710013 | ID=MS.gene36563.t1.exon14;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75710013 | 75710108 | 75710013 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75708935 | 75708983 | 75708935 | ID=MS.gene36563.t1.exon15;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75708935 | 75708983 | 75708935 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75708726 | 75708836 | 75708726 | ID=MS.gene36563.t1.exon16;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75708726 | 75708836 | 75708726 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75708567 | 75708641 | 75708567 | ID=MS.gene36563.t1.exon17;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75708567 | 75708641 | 75708567 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| chr8.4 | exon | 75708265 | 75708320 | 75708265 | ID=MS.gene36563.t1.exon18;Parent=MS.gene36563.t1 |
| chr8.4 | CDS | 75708265 | 75708320 | 75708265 | ID=cds.MS.gene36563.t1;Parent=MS.gene36563.t1 |
| Gene Sequence |
| Protein sequence |