Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36961.t1 | XP_003626998.1 | 95 | 202 | 2 | 1 | 1 | 194 | 1 | 202 | 2.50E-97 | 364.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36961.t1 | A7P756 | 68.1 | 185 | 51 | 1 | 18 | 194 | 26 | 210 | 2.3e-62 | 240.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36961.t1 | G7LFX8 | 95.0 | 202 | 2 | 1 | 1 | 194 | 1 | 202 | 1.8e-97 | 364.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049274 | MS.gene36961 | 0.812418 | 4.28E-51 | -1.69E-46 |
| MS.gene049298 | MS.gene36961 | 0.830632 | 2.63E-55 | -1.69E-46 |
| MS.gene049633 | MS.gene36961 | -0.805424 | 1.34E-49 | -1.69E-46 |
| MS.gene050338 | MS.gene36961 | 0.818206 | 2.21E-52 | -1.69E-46 |
| MS.gene050444 | MS.gene36961 | -0.809039 | 2.30E-50 | -1.69E-46 |
| MS.gene050710 | MS.gene36961 | 0.810515 | 1.11E-50 | -1.69E-46 |
| MS.gene050809 | MS.gene36961 | 0.82292 | 1.83E-53 | -1.69E-46 |
| MS.gene05081 | MS.gene36961 | -0.817957 | 2.52E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene36961 | -0.81706 | 4.01E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene36961 | -0.817992 | 2.47E-52 | -1.69E-46 |
| MS.gene051439 | MS.gene36961 | 0.807251 | 5.54E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene36961 | -0.831439 | 1.67E-55 | -1.69E-46 |
| MS.gene051863 | MS.gene36961 | 0.812551 | 4.00E-51 | -1.69E-46 |
| MS.gene052870 | MS.gene36961 | -0.807189 | 5.71E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene36961 | -0.815627 | 8.39E-52 | -1.69E-46 |
| MS.gene053108 | MS.gene36961 | 0.80741 | 5.12E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene36961 | -0.81011 | 1.36E-50 | -1.69E-46 |
| MS.gene053479 | MS.gene36961 | -0.80753 | 4.83E-50 | -1.69E-46 |
| MS.gene053920 | MS.gene36961 | 0.80923 | 2.10E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene36961 | 0.815497 | 8.97E-52 | -1.69E-46 |
| MS.gene054742 | MS.gene36961 | 0.807273 | 5.48E-50 | -1.69E-46 |
| MS.gene054884 | MS.gene36961 | 0.816215 | 6.20E-52 | -1.69E-46 |
| MS.gene054941 | MS.gene36961 | 0.817547 | 3.12E-52 | -1.69E-46 |
| MS.gene054965 | MS.gene36961 | 0.813701 | 2.24E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene36961 | -0.814444 | 1.54E-51 | -1.69E-46 |
| MS.gene056387 | MS.gene36961 | -0.830451 | 2.92E-55 | -1.69E-46 |
| MS.gene056590 | MS.gene36961 | 0.802531 | 5.37E-49 | -1.69E-46 |
| MS.gene056591 | MS.gene36961 | 0.801071 | 1.07E-48 | -1.69E-46 |
| MS.gene056618 | MS.gene36961 | 0.814406 | 1.57E-51 | -1.69E-46 |
| MS.gene056688 | MS.gene36961 | 0.801473 | 8.86E-49 | -1.69E-46 |
| MS.gene056697 | MS.gene36961 | 0.80279 | 4.75E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene36961 | 0.806986 | 6.30E-50 | -1.69E-46 |
| MS.gene057658 | MS.gene36961 | -0.804186 | 2.44E-49 | -1.69E-46 |
| MS.gene057717 | MS.gene36961 | 0.829195 | 5.89E-55 | -1.69E-46 |
| MS.gene057856 | MS.gene36961 | -0.806647 | 7.43E-50 | -1.69E-46 |
| MS.gene057857 | MS.gene36961 | -0.804894 | 1.73E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene36961 | 0.838824 | 2.29E-57 | -1.69E-46 |
| MS.gene05934 | MS.gene36961 | -0.805557 | 1.26E-49 | -1.69E-46 |
| MS.gene05960 | MS.gene36961 | 0.803796 | 2.94E-49 | -1.69E-46 |
| MS.gene059699 | MS.gene36961 | 0.806787 | 6.94E-50 | -1.69E-46 |
| MS.gene059703 | MS.gene36961 | 0.802221 | 6.22E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36961.t1 | MTR_8g013900 | 95.050 | 202 | 2 | 1 | 1 | 194 | 1 | 202 | 4.21e-137 | 381 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36961.t1 | AT3G16300 | 46.927 | 179 | 87 | 1 | 24 | 194 | 33 | 211 | 8.53e-50 | 160 |
| MS.gene36961.t1 | AT1G79780 | 44.944 | 178 | 87 | 2 | 26 | 192 | 8 | 185 | 4.40e-44 | 145 |
Find 41 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCACGTCAAGATTTCTT+AGG | 0.200483 | 8.4:+77034579 | MS.gene36961:CDS |
| CTTTGGGCAGATTTCTTGTT+GGG | 0.281342 | 8.4:+77034513 | MS.gene36961:intron |
| CTGCTGTGCATGATGTTATA+TGG | 0.353776 | 8.4:+77035696 | MS.gene36961:CDS |
| AGCAGTTCTGTCTCTATCTA+TGG | 0.366482 | 8.4:+77032375 | MS.gene36961:CDS |
| TCTTTGGGCAGATTTCTTGT+TGG | 0.386386 | 8.4:+77034512 | MS.gene36961:intron |
| CTCCGTTCTCCGGCGTCGAC+CGG | 0.397957 | 8.4:-77032274 | None:intergenic |
| AGTGCTGGATCAGCTGCATC+TGG | 0.402362 | 8.4:+77035539 | MS.gene36961:CDS |
| AATTCCAGTGCGATTTAGAT+TGG | 0.408297 | 8.4:-77035567 | None:intergenic |
| ACCCATGCATGCTTTCTAGA+AGG | 0.423825 | 8.4:-77034617 | None:intergenic |
| CTTCTCGCCGTCTCCAACGA+GGG | 0.425598 | 8.4:-77032250 | None:intergenic |
| AAAACAGCTGATGAAATTGA+AGG | 0.435057 | 8.4:-77035660 | None:intergenic |
| GCTTATGCATTGATGAGTGC+TGG | 0.443070 | 8.4:+77035524 | MS.gene36961:CDS |
| AACGAGGGGACCACTCATTC+TGG | 0.444423 | 8.4:-77032235 | None:intergenic |
| AAAGTCCACTTAGAATGAAC+AGG | 0.463744 | 8.4:-77032408 | None:intergenic |
| TGGCACGTCAAGATTTCTTA+GGG | 0.465265 | 8.4:+77034580 | MS.gene36961:CDS |
| GCAGCATCACCTCCGTTCTC+CGG | 0.490610 | 8.4:-77032284 | None:intergenic |
| TCATTGCTGCAACTACTCAT+TGG | 0.498018 | 8.4:+77034560 | MS.gene36961:CDS |
| GTGATGCTGCTGATTCTTCG+AGG | 0.503390 | 8.4:+77032297 | MS.gene36961:CDS |
| CAGCAATGAGTGGGCTGCAA+CGG | 0.516377 | 8.4:-77034546 | None:intergenic |
| TTTGGGCAGATTTCTTGTTG+GGG | 0.529337 | 8.4:+77034514 | MS.gene36961:intron |
| GACCGGTCGACGCCGGAGAA+CGG | 0.530141 | 8.4:+77032272 | MS.gene36961:CDS |
| TTCCTTCTAGAAAGCATGCA+TGG | 0.533369 | 8.4:+77034615 | MS.gene36961:CDS |
| GTTGGAGACGGCGAGAAGAC+CGG | 0.536690 | 8.4:+77032255 | MS.gene36961:CDS |
| AGAATGAGTGGTCCCCTCGT+TGG | 0.542561 | 8.4:+77032237 | MS.gene36961:CDS |
| GTAACCAATCTAAATCGCAC+TGG | 0.549479 | 8.4:+77035563 | MS.gene36961:CDS |
| ATTCTTCGAGGTTTATGCAT+GGG | 0.555159 | 8.4:+77032309 | MS.gene36961:CDS |
| AGTGGTCCCCTCGTTGGAGA+CGG | 0.564057 | 8.4:+77032243 | MS.gene36961:CDS |
| GCGAGAAGACCGGTCGACGC+CGG | 0.569363 | 8.4:+77032265 | MS.gene36961:CDS |
| TGGTCACAAAATTTGTGCAA+AGG | 0.572337 | 8.4:-77035620 | None:intergenic |
| TCCTTCTAGAAAGCATGCAT+GGG | 0.580579 | 8.4:+77034616 | MS.gene36961:CDS |
| TGAGTAGTTGCAGCAATGAG+TGG | 0.588948 | 8.4:-77034556 | None:intergenic |
| TTCTCGCCGTCTCCAACGAG+GGG | 0.591751 | 8.4:-77032249 | None:intergenic |
| AACATCATGCACAGCAGATG+TGG | 0.599570 | 8.4:-77035690 | None:intergenic |
| GATTCTTCGAGGTTTATGCA+TGG | 0.612397 | 8.4:+77032308 | MS.gene36961:CDS |
| GAAATTGAAGGCTATTGAGA+TGG | 0.617309 | 8.4:-77035648 | None:intergenic |
| TCTTCTCGCCGTCTCCAACG+AGG | 0.630530 | 8.4:-77032251 | None:intergenic |
| ACAGCAGCTTTAGAGTGCAG+TGG | 0.647077 | 8.4:+77032207 | MS.gene36961:CDS |
| CGGTCGACGCCGGAGAACGG+AGG | 0.650567 | 8.4:+77032275 | MS.gene36961:CDS |
| AGTGGATCAACCAGAATGAG+TGG | 0.652261 | 8.4:+77032225 | MS.gene36961:CDS |
| AGGCTATTGAGATGGCAACA+TGG | 0.653048 | 8.4:-77035640 | None:intergenic |
| GAGTAGTTGCAGCAATGAGT+GGG | 0.669558 | 8.4:-77034555 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACAATTTATAAATACTAT+AGG | - | chr8.4:77035415-77035434 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAGTTTTTTTAG+GGG | + | chr8.4:77033085-77033104 | MS.gene36961:intron | 10.0% |
| !!! | AAAAAAACTTTTTTTTTTGA+AGG | - | chr8.4:77033083-77033102 | None:intergenic | 10.0% |
| !!! | AATGAAATTATTTTCTTAAA+AGG | + | chr8.4:77033658-77033677 | MS.gene36961:intron | 10.0% |
| !!! | ACTTTAAATTTTTTTTTTAG+GGG | + | chr8.4:77033055-77033074 | MS.gene36961:intron | 10.0% |
| !!! | AGTTTTGATATATTATTTTT+TGG | + | chr8.4:77033119-77033138 | MS.gene36961:intron | 10.0% |
| !!! | CAAAAAAAAAAGTTTTTTTA+GGG | + | chr8.4:77033084-77033103 | MS.gene36961:intron | 10.0% |
| !!! | TCAAAAAAAAAAGTTTTTTT+AGG | + | chr8.4:77033083-77033102 | MS.gene36961:intron | 10.0% |
| !!! | TTAGTTTTATATTAAAATGT+AGG | + | chr8.4:77034476-77034495 | MS.gene36961:intron | 10.0% |
| !! | AAAAAAAAAAGTTAAATGGA+AGG | + | chr8.4:77032967-77032986 | MS.gene36961:intron | 15.0% |
| !! | AATATCTGATGTAAAATTTA+GGG | + | chr8.4:77033758-77033777 | MS.gene36961:intron | 15.0% |
| !! | AGACATATGATTATTTATTA+GGG | - | chr8.4:77034877-77034896 | None:intergenic | 15.0% |
| !! | ATGATAATCAAAATTAATCT+AGG | + | chr8.4:77034747-77034766 | MS.gene36961:intron | 15.0% |
| !! | TAATATCTGATGTAAAATTT+AGG | + | chr8.4:77033757-77033776 | MS.gene36961:intron | 15.0% |
| !!! | ATATGCATTTTTTTTTTTTG+AGG | - | chr8.4:77034119-77034138 | None:intergenic | 15.0% |
| !!! | TAATATATCAAAACTTTTGA+AGG | - | chr8.4:77033114-77033133 | None:intergenic | 15.0% |
| !!! | TATGCATTTTTTTTTTTTGA+GGG | - | chr8.4:77034118-77034137 | None:intergenic | 15.0% |
| !!! | TATTTTTATGTAGGTTATAT+AGG | - | chr8.4:77035027-77035046 | None:intergenic | 15.0% |
| !!! | TTAAAATCAGTTTTTAAATG+AGG | + | chr8.4:77032992-77033011 | MS.gene36961:intron | 15.0% |
| !!! | TTGAGTTCATTTTTTATTAT+TGG | + | chr8.4:77032674-77032693 | MS.gene36961:intron | 15.0% |
| !!! | TTGATATATAAATTTTTACG+TGG | + | chr8.4:77034072-77034091 | MS.gene36961:intron | 15.0% |
| !!! | TTTAATTTCATATAGTTGAA+GGG | + | chr8.4:77033799-77033818 | MS.gene36961:intron | 15.0% |
| !!! | TTTTAACTTTGTTTTTGTTT+TGG | + | chr8.4:77032534-77032553 | MS.gene36961:intron | 15.0% |
| !!! | TTTTGTGTTGATTTTTTAAA+GGG | + | chr8.4:77033512-77033531 | MS.gene36961:intron | 15.0% |
| !!! | TTTTTGTGTTGATTTTTTAA+AGG | + | chr8.4:77033511-77033530 | MS.gene36961:intron | 15.0% |
| !!! | TTTTTTTTTCTTTTCAATCA+GGG | + | chr8.4:77033025-77033044 | MS.gene36961:intron | 15.0% |
| !! | AAAGAAAATTACTCATATGA+AGG | - | chr8.4:77032438-77032457 | None:intergenic | 20.0% |
| !! | AAATATACAAACTTAGTGTT+GGG | + | chr8.4:77034770-77034789 | MS.gene36961:intron | 20.0% |
| !! | AATGTTTGTGTTAATAATAG+AGG | - | chr8.4:77032845-77032864 | None:intergenic | 20.0% |
| !! | AATTGAATTTGAATATTCAC+TGG | + | chr8.4:77032701-77032720 | MS.gene36961:intron | 20.0% |
| !! | AGAAAATATTCATTGATAAG+AGG | + | chr8.4:77032651-77032670 | MS.gene36961:intron | 20.0% |
| !! | ATAAAAATACAAGCTATGTT+TGG | + | chr8.4:77035038-77035057 | MS.gene36961:intron | 20.0% |
| !! | ATAAATATGTAATGAAAACC+CGG | + | chr8.4:77035324-77035343 | MS.gene36961:intron | 20.0% |
| !! | ATGTTTGTGTTAATAATAGA+GGG | - | chr8.4:77032844-77032863 | None:intergenic | 20.0% |
| !! | GAGACATATGATTATTTATT+AGG | - | chr8.4:77034878-77034897 | None:intergenic | 20.0% |
| !! | GGTGATACATAAATAAAATT+GGG | - | chr8.4:77033867-77033886 | None:intergenic | 20.0% |
| !! | TAAAGTAAACAATCAATTGA+TGG | - | chr8.4:77035373-77035392 | None:intergenic | 20.0% |
| !! | TGGTTAAGCAATTTATAAAA+AGG | + | chr8.4:77033549-77033568 | MS.gene36961:intron | 20.0% |
| !! | TGTGATAATTCATGATTAAT+TGG | - | chr8.4:77033987-77034006 | None:intergenic | 20.0% |
| !! | TTATAAATACTATAGGAGAA+AGG | - | chr8.4:77035408-77035427 | None:intergenic | 20.0% |
| !!! | AGGTTTATGATTTTTATCTT+TGG | + | chr8.4:77034496-77034515 | MS.gene36961:intron | 20.0% |
| !!! | CTTTTTTTTTCTTTTCAATC+AGG | + | chr8.4:77033024-77033043 | MS.gene36961:intron | 20.0% |
| !!! | GAAGTTATTTTTTATCGATA+TGG | - | chr8.4:77032905-77032924 | None:intergenic | 20.0% |
| !!! | GGTTTATGATTTTTATCTTT+GGG | + | chr8.4:77034497-77034516 | MS.gene36961:intron | 20.0% |
| !!! | GTTTAATTTCATATAGTTGA+AGG | + | chr8.4:77033798-77033817 | MS.gene36961:intron | 20.0% |
| !!! | TAATATAAAGTCTTATCCAT+AGG | - | chr8.4:77033931-77033950 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTTTTCAATCAG+GGG | + | chr8.4:77033026-77033045 | MS.gene36961:intron | 20.0% |
| ! | AAACAAGTGAAAGATGAAAT+TGG | + | chr8.4:77032926-77032945 | MS.gene36961:intron | 25.0% |
| ! | ATAATTAAGTAGTTGCCTTA+AGG | - | chr8.4:77034959-77034978 | None:intergenic | 25.0% |
| ! | ATTGTGTGGAATTAACAAAT+GGG | + | chr8.4:77033184-77033203 | MS.gene36961:intron | 25.0% |
| ! | CAAGAAAATACAACAAAGAA+AGG | - | chr8.4:77032747-77032766 | None:intergenic | 25.0% |
| ! | CTGTAAATAGACTATTAGAT+TGG | + | chr8.4:77034224-77034243 | MS.gene36961:intron | 25.0% |
| ! | GAAAAATAGTTGAAAGAGAA+AGG | - | chr8.4:77033357-77033376 | None:intergenic | 25.0% |
| ! | GAAATATACAAACTTAGTGT+TGG | + | chr8.4:77034769-77034788 | MS.gene36961:intron | 25.0% |
| ! | GAGTTGAAACTATAGATATT+TGG | - | chr8.4:77034349-77034368 | None:intergenic | 25.0% |
| ! | GATACATAAATAAAATTGGG+AGG | - | chr8.4:77033864-77033883 | None:intergenic | 25.0% |
| ! | GGGTGATACATAAATAAAAT+TGG | - | chr8.4:77033868-77033887 | None:intergenic | 25.0% |
| ! | TACAAGAATCATTTACATTG+CGG | - | chr8.4:77033464-77033483 | None:intergenic | 25.0% |
| ! | TCAAATTAACATTCTCTCTT+GGG | - | chr8.4:77033889-77033908 | None:intergenic | 25.0% |
| ! | TCTGACATTACTGTAAATTT+AGG | + | chr8.4:77035439-77035458 | MS.gene36961:intron | 25.0% |
| ! | TTATGTTGAGAATAATGTGA+AGG | + | chr8.4:77032622-77032641 | MS.gene36961:intron | 25.0% |
| !! | AGTAATATTTCGAACTTGTT+TGG | + | chr8.4:77033427-77033446 | MS.gene36961:intron | 25.0% |
| !! | TCAATTGATGGTAATATAAC+TGG | - | chr8.4:77035361-77035380 | None:intergenic | 25.0% |
| !!! | AACTATAAGTGTTACTTTTG+TGG | + | chr8.4:77035484-77035503 | MS.gene36961:intron | 25.0% |
| !!! | AGCTTTTGATTTCAAGTTAA+TGG | + | chr8.4:77034317-77034336 | MS.gene36961:intron | 25.0% |
| !!! | CATAGCTTGTATTTTTATGT+AGG | - | chr8.4:77035036-77035055 | None:intergenic | 25.0% |
| !!! | CTTTCTTTGTTGTATTTTCT+TGG | + | chr8.4:77032745-77032764 | MS.gene36961:intron | 25.0% |
| !!! | TATTCAATTTGTTAGCTCTT+AGG | + | chr8.4:77033161-77033180 | MS.gene36961:intron | 25.0% |
| !!! | TTTTGATTTCAAGTTAATGG+AGG | + | chr8.4:77034320-77034339 | MS.gene36961:intron | 25.0% |
| AAAAATGAGAGATTCGATCA+CGG | - | chr8.4:77033294-77033313 | None:intergenic | 30.0% | |
| AAAACAGCTGATGAAATTGA+AGG | - | chr8.4:77035663-77035682 | None:intergenic | 30.0% | |
| ATGTAGGTCACAAATATTCA+TGG | - | chr8.4:77035002-77035021 | None:intergenic | 30.0% | |
| CAAATTAACATTCTCTCTTG+GGG | - | chr8.4:77033888-77033907 | None:intergenic | 30.0% | |
| CTCAAATTAACATTCTCTCT+TGG | - | chr8.4:77033890-77033909 | None:intergenic | 30.0% | |
| GAATCTATAAAAGACACATG+AGG | - | chr8.4:77033406-77033425 | None:intergenic | 30.0% | |
| GATTGTGTGGAATTAACAAA+TGG | + | chr8.4:77033183-77033202 | MS.gene36961:intron | 30.0% | |
| GGATCAGGTACATATATATA+TGG | + | chr8.4:77034652-77034671 | MS.gene36961:intron | 30.0% | |
| GTGAAAGATGAAATTGGATT+AGG | + | chr8.4:77032932-77032951 | MS.gene36961:intron | 30.0% | |
| TCTACTTAGCATATGTTCAA+GGG | + | chr8.4:77033591-77033610 | MS.gene36961:intron | 30.0% | |
| TTGTGTTATCTACTTTGATC+CGG | + | chr8.4:77034177-77034196 | MS.gene36961:intron | 30.0% | |
| ! | ATATAGTTGAAGGGAGTATA+AGG | + | chr8.4:77033808-77033827 | MS.gene36961:intron | 30.0% |
| ! | GGATTGAAGATGATTTTGAA+GGG | + | chr8.4:77034267-77034286 | MS.gene36961:intron | 30.0% |
| ! | TACTTTTGTGGTAAAATTGC+AGG | + | chr8.4:77035496-77035515 | MS.gene36961:intron | 30.0% |
| ! | TATAGTTGAAGGGAGTATAA+GGG | + | chr8.4:77033809-77033828 | MS.gene36961:intron | 30.0% |
| !! | TGGAATTAACAAATGGGTTA+TGG | + | chr8.4:77033190-77033209 | MS.gene36961:intron | 30.0% |
| !! | TGTGGTCTTATATGTATTTG+TGG | + | chr8.4:77032818-77032837 | MS.gene36961:intron | 30.0% |
| !! | TTGAGTACTGAAATAGCTTA+TGG | - | chr8.4:77035259-77035278 | None:intergenic | 30.0% |
| !!! | GAACGAAATACGGTTTTAAA+TGG | + | chr8.4:77033620-77033639 | MS.gene36961:intron | 30.0% |
| !!! | GCTCTGATTTTTGAAGTAAT+TGG | - | chr8.4:77034034-77034053 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTGGAGAGAGAAA+AGG | + | chr8.4:77032546-77032565 | MS.gene36961:intron | 30.0% |
| AAAATGAGAGATTCGATCAC+GGG | - | chr8.4:77033293-77033312 | None:intergenic | 35.0% | |
| AAAGTCCACTTAGAATGAAC+AGG | - | chr8.4:77032411-77032430 | None:intergenic | 35.0% | |
| AACCAAGTATCACTTGAAAG+TGG | + | chr8.4:77034431-77034450 | MS.gene36961:intron | 35.0% | |
| AACTTAGTTATGAGTCCGTT+AGG | - | chr8.4:77035292-77035311 | None:intergenic | 35.0% | |
| AATTCCAGTGCGATTTAGAT+TGG | - | chr8.4:77035570-77035589 | None:intergenic | 35.0% | |
| ACTTACCTGTTCATTCTAAG+TGG | + | chr8.4:77032403-77032422 | MS.gene36961:intron | 35.0% | |
| ATAAAAGACACATGAGGCTA+AGG | - | chr8.4:77033400-77033419 | None:intergenic | 35.0% | |
| ATGTTTCTTACATGTCTCTC+CGG | - | chr8.4:77034199-77034218 | None:intergenic | 35.0% | |
| ATTCTTCGAGGTTTATGCAT+GGG | + | chr8.4:77032309-77032328 | MS.gene36961:CDS | 35.0% | |
| ATTGCTTAACCAATGCCTAA+CGG | - | chr8.4:77033541-77033560 | None:intergenic | 35.0% | |
| CTCAAATGAGTCAATCCTAA+CGG | + | chr8.4:77035274-77035293 | MS.gene36961:intron | 35.0% | |
| CTCTACTTAGCATATGTTCA+AGG | + | chr8.4:77033590-77033609 | MS.gene36961:intron | 35.0% | |
| GAAATTGAAGGCTATTGAGA+TGG | - | chr8.4:77035651-77035670 | None:intergenic | 35.0% | |
| GAGAGACATGTAAGAAACAT+TGG | + | chr8.4:77034199-77034218 | MS.gene36961:intron | 35.0% | |
| GTAGGTTATATAGGCAATGT+AGG | - | chr8.4:77035018-77035037 | None:intergenic | 35.0% | |
| TAAGTCTTGCGAATACCTTA+AGG | + | chr8.4:77034941-77034960 | MS.gene36961:intron | 35.0% | |
| TGCAAAGGCTTGCAAAAATT+TGG | - | chr8.4:77035608-77035627 | None:intergenic | 35.0% | |
| TGGTCACAAAATTTGTGCAA+AGG | - | chr8.4:77035623-77035642 | None:intergenic | 35.0% | |
| ! | ATAACTGGATATTTGCTAGC+CGG | - | chr8.4:77035346-77035365 | None:intergenic | 35.0% |
| ! | CGGATTGAAGATGATTTTGA+AGG | + | chr8.4:77034266-77034285 | MS.gene36961:intron | 35.0% |
| ! | GTTTGAGACTCTTATTAGAG+CGG | + | chr8.4:77034246-77034265 | MS.gene36961:intron | 35.0% |
| !!! | ATGCATGGGTTATTTTTGCT+GGG | + | chr8.4:77034630-77034649 | MS.gene36961:CDS | 35.0% |
| !!! | TTTTTTAAAGGGCTACCGTT+AGG | + | chr8.4:77033523-77033542 | MS.gene36961:intron | 35.0% |
| AGCAGTTCTGTCTCTATCTA+TGG | + | chr8.4:77032375-77032394 | MS.gene36961:CDS | 40.0% | |
| AGGGAGCAATGAACGAAATA+CGG | + | chr8.4:77033610-77033629 | MS.gene36961:intron | 40.0% | |
| CTCAAGACTATTCCAATTGG+TGG | - | chr8.4:77033839-77033858 | None:intergenic | 40.0% | |
| CTGCTGTGCATGATGTTATA+TGG | + | chr8.4:77035696-77035715 | MS.gene36961:CDS | 40.0% | |
| CTTTGGGCAGATTTCTTGTT+GGG | + | chr8.4:77034513-77034532 | MS.gene36961:intron | 40.0% | |
| GATTCTTCGAGGTTTATGCA+TGG | + | chr8.4:77032308-77032327 | MS.gene36961:CDS | 40.0% | |
| GCACTCAAGACTATTCCAAT+TGG | - | chr8.4:77033842-77033861 | None:intergenic | 40.0% | |
| GGCTTGCAAAAATTTGGAAG+AGG | - | chr8.4:77035602-77035621 | None:intergenic | 40.0% | |
| GTAACCAATCTAAATCGCAC+TGG | + | chr8.4:77035563-77035582 | MS.gene36961:CDS | 40.0% | |
| TCATTGCTGCAACTACTCAT+TGG | + | chr8.4:77034560-77034579 | MS.gene36961:CDS | 40.0% | |
| TCCATAGGACCTACTCAAAA+CGG | - | chr8.4:77033916-77033935 | None:intergenic | 40.0% | |
| TCTTGGCATCACTGATGTAT+AGG | + | chr8.4:77034840-77034859 | MS.gene36961:intron | 40.0% | |
| TCTTTGGGCAGATTTCTTGT+TGG | + | chr8.4:77034512-77034531 | MS.gene36961:intron | 40.0% | |
| TGGCACGTCAAGATTTCTTA+GGG | + | chr8.4:77034580-77034599 | MS.gene36961:CDS | 40.0% | |
| TTGGCACGTCAAGATTTCTT+AGG | + | chr8.4:77034579-77034598 | MS.gene36961:CDS | 40.0% | |
| TTTGGGCAGATTTCTTGTTG+GGG | + | chr8.4:77034514-77034533 | MS.gene36961:intron | 40.0% | |
| ! | ACCATAAAAAGTGCAGACCA+TGG | + | chr8.4:77033222-77033241 | MS.gene36961:intron | 40.0% |
| ! | CATTGCCATGAACCTCTTTT+CGG | - | chr8.4:77032774-77032793 | None:intergenic | 40.0% |
| ! | GACCACTTTCAAGTGATACT+TGG | - | chr8.4:77034436-77034455 | None:intergenic | 40.0% |
| ! | TAACTGGATATTTGCTAGCC+GGG | - | chr8.4:77035345-77035364 | None:intergenic | 40.0% |
| ! | TCCTTCTAGAAAGCATGCAT+GGG | + | chr8.4:77034616-77034635 | MS.gene36961:CDS | 40.0% |
| ! | TGTTAGCTCTTAGGATTGTG+TGG | + | chr8.4:77033170-77033189 | MS.gene36961:intron | 40.0% |
| ! | TTCCTTCTAGAAAGCATGCA+TGG | + | chr8.4:77034615-77034634 | MS.gene36961:CDS | 40.0% |
| !! | TATAAGGGTACTCCACCAAT+TGG | + | chr8.4:77033824-77033843 | MS.gene36961:intron | 40.0% |
| !! | TTTGAGTCACCGTTTTGAGT+AGG | + | chr8.4:77033904-77033923 | MS.gene36961:intron | 40.0% |
| !! | TTTTCTTGGTGACCGAAAAG+AGG | + | chr8.4:77032759-77032778 | MS.gene36961:intron | 40.0% |
| !!! | CATGCATGGGTTATTTTTGC+TGG | + | chr8.4:77034629-77034648 | MS.gene36961:CDS | 40.0% |
| !!! | GTTTTGGAGAGAGAAAAGGA+AGG | + | chr8.4:77032550-77032569 | MS.gene36961:intron | 40.0% |
| !!! | TGCATGGGTTATTTTTGCTG+GGG | + | chr8.4:77034631-77034650 | MS.gene36961:CDS | 40.0% |
| AACATCATGCACAGCAGATG+TGG | - | chr8.4:77035693-77035712 | None:intergenic | 45.0% | |
| AAGAACTCGAGCTCGATTCT+TGG | + | chr8.4:77034823-77034842 | MS.gene36961:intron | 45.0% | |
| ACCCATGCATGCTTTCTAGA+AGG | - | chr8.4:77034620-77034639 | None:intergenic | 45.0% | |
| AGGCTATTGAGATGGCAACA+TGG | - | chr8.4:77035643-77035662 | None:intergenic | 45.0% | |
| AGTGGATCAACCAGAATGAG+TGG | + | chr8.4:77032225-77032244 | MS.gene36961:CDS | 45.0% | |
| GAGTAGTTGCAGCAATGAGT+GGG | - | chr8.4:77034558-77034577 | None:intergenic | 45.0% | |
| TGAGTAGTTGCAGCAATGAG+TGG | - | chr8.4:77034559-77034578 | None:intergenic | 45.0% | |
| TGGCATCACTGATGTATAGG+AGG | + | chr8.4:77034843-77034862 | MS.gene36961:intron | 45.0% | |
| ! | AGCTCGAGTTCTTTTCTTGG+TGG | - | chr8.4:77034816-77034835 | None:intergenic | 45.0% |
| ! | GCTTATGCATTGATGAGTGC+TGG | + | chr8.4:77035524-77035543 | MS.gene36961:CDS | 45.0% |
| ! | TCGAGCTCGAGTTCTTTTCT+TGG | - | chr8.4:77034819-77034838 | None:intergenic | 45.0% |
| ! | TGACTTTTCACACAACGCCA+TGG | - | chr8.4:77033242-77033261 | None:intergenic | 45.0% |
| !! | ACCGTTTTGAGTAGGTCCTA+TGG | + | chr8.4:77033912-77033931 | MS.gene36961:intron | 45.0% |
| !! | CGAACTTGTTTGGCGTGTTT+TGG | + | chr8.4:77033437-77033456 | MS.gene36961:intron | 45.0% |
| !! | GCCATGGTCTGCACTTTTTA+TGG | - | chr8.4:77033226-77033245 | None:intergenic | 45.0% |
| !!! | GGTTATTTTTGCTGGGGATC+AGG | + | chr8.4:77034637-77034656 | MS.gene36961:CDS | 45.0% |
| !! | TAAAAAAAAAAAAAGTTAAA+TGG | + | chr8.4:77032963-77032982 | MS.gene36961:intron | 5.0% |
| !!! | AAACTTTAAATTTTTTTTTT+AGG | + | chr8.4:77033053-77033072 | MS.gene36961:intron | 5.0% |
| !!! | AACTTTAAATTTTTTTTTTA+GGG | + | chr8.4:77033054-77033073 | MS.gene36961:intron | 5.0% |
| !!! | TTTTATTTTTTTTAAAATTG+TGG | + | chr8.4:77032800-77032819 | MS.gene36961:intron | 5.0% |
| AAAGGGCTACCGTTAGGCAT+TGG | + | chr8.4:77033529-77033548 | MS.gene36961:intron | 50.0% | |
| GGTGACCGAAAAGAGGTTCA+TGG | + | chr8.4:77032766-77032785 | MS.gene36961:intron | 50.0% | |
| !! | ACAGCAGCTTTAGAGTGCAG+TGG | + | chr8.4:77032207-77032226 | MS.gene36961:CDS | 50.0% |
| !! | GTGATGCTGCTGATTCTTCG+AGG | + | chr8.4:77032297-77032316 | MS.gene36961:CDS | 50.0% |
| AACGAGGGGACCACTCATTC+TGG | - | chr8.4:77032238-77032257 | None:intergenic | 55.0% | |
| AGAATGAGTGGTCCCCTCGT+TGG | + | chr8.4:77032237-77032256 | MS.gene36961:CDS | 55.0% | |
| ! | AGTGCTGGATCAGCTGCATC+TGG | + | chr8.4:77035539-77035558 | MS.gene36961:CDS | 55.0% |
| !! | CAGCAATGAGTGGGCTGCAA+CGG | - | chr8.4:77034549-77034568 | None:intergenic | 55.0% |
| AGTGGTCCCCTCGTTGGAGA+CGG | + | chr8.4:77032243-77032262 | MS.gene36961:CDS | 60.0% | |
| CTTCTCGCCGTCTCCAACGA+GGG | - | chr8.4:77032253-77032272 | None:intergenic | 60.0% | |
| GCAGCATCACCTCCGTTCTC+CGG | - | chr8.4:77032287-77032306 | None:intergenic | 60.0% | |
| GTTGGAGACGGCGAGAAGAC+CGG | + | chr8.4:77032255-77032274 | MS.gene36961:CDS | 60.0% | |
| TCTTCTCGCCGTCTCCAACG+AGG | - | chr8.4:77032254-77032273 | None:intergenic | 60.0% | |
| TTCTCGCCGTCTCCAACGAG+GGG | - | chr8.4:77032252-77032271 | None:intergenic | 60.0% | |
| GACCGGTCGACGCCGGAGAA+CGG | + | chr8.4:77032272-77032291 | MS.gene36961:CDS | 70.0% | |
| GCGAGAAGACCGGTCGACGC+CGG | + | chr8.4:77032265-77032284 | MS.gene36961:CDS | 70.0% | |
| !! | CTCCGTTCTCCGGCGTCGAC+CGG | - | chr8.4:77032277-77032296 | None:intergenic | 70.0% |
| CGGTCGACGCCGGAGAACGG+AGG | + | chr8.4:77032275-77032294 | MS.gene36961:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 77032189 | 77035733 | 77032189 | ID=MS.gene36961 |
| chr8.4 | mRNA | 77032189 | 77035733 | 77032189 | ID=MS.gene36961.t1;Parent=MS.gene36961 |
| chr8.4 | exon | 77032189 | 77032421 | 77032189 | ID=MS.gene36961.t1.exon1;Parent=MS.gene36961.t1 |
| chr8.4 | CDS | 77032189 | 77032421 | 77032189 | ID=cds.MS.gene36961.t1;Parent=MS.gene36961.t1 |
| chr8.4 | exon | 77034523 | 77034658 | 77034523 | ID=MS.gene36961.t1.exon2;Parent=MS.gene36961.t1 |
| chr8.4 | CDS | 77034523 | 77034658 | 77034523 | ID=cds.MS.gene36961.t1;Parent=MS.gene36961.t1 |
| chr8.4 | exon | 77035518 | 77035733 | 77035518 | ID=MS.gene36961.t1.exon3;Parent=MS.gene36961.t1 |
| chr8.4 | CDS | 77035518 | 77035733 | 77035518 | ID=cds.MS.gene36961.t1;Parent=MS.gene36961.t1 |
| Gene Sequence |
| Protein sequence |
