Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41965.t1 | XP_013461948.1 | 53.9 | 371 | 47 | 5 | 1 | 273 | 126 | 470 | 2.40E-77 | 298.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41965.t1 | Q8L7A0 | 49.3 | 365 | 76 | 6 | 1 | 272 | 127 | 475 | 1.9e-67 | 257.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41965.t1 | G7ZWM6 | 53.9 | 371 | 47 | 5 | 1 | 273 | 126 | 470 | 1.7e-77 | 298.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene41965 | 0.822196 | 2.70E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene41965 | 0.804958 | 1.68E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene41965 | 0.813772 | 2.16E-51 | -1.69E-46 |
| MS.gene049501 | MS.gene41965 | 0.81036 | 1.20E-50 | -1.69E-46 |
| MS.gene050355 | MS.gene41965 | 0.810036 | 1.41E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene41965 | 0.814137 | 1.80E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene41965 | 0.812284 | 4.58E-51 | -1.69E-46 |
| MS.gene050721 | MS.gene41965 | 0.809045 | 2.30E-50 | -1.69E-46 |
| MS.gene050724 | MS.gene41965 | 0.806696 | 7.26E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene41965 | 0.813923 | 2.00E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene41965 | 0.811927 | 5.48E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene41965 | 0.800656 | 1.30E-48 | -1.69E-46 |
| MS.gene052020 | MS.gene41965 | 0.803381 | 3.58E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene41965 | 0.812327 | 4.48E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene41965 | 0.814049 | 1.88E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene41965 | 0.800186 | 1.62E-48 | -1.69E-46 |
| MS.gene05414 | MS.gene41965 | 0.80903 | 2.31E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene41965 | 0.902756 | 7.00E-79 | -1.69E-46 |
| MS.gene054467 | MS.gene41965 | 0.802197 | 6.29E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene41965 | 0.812765 | 3.60E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene41965 | 0.809896 | 1.51E-50 | -1.69E-46 |
| MS.gene05468 | MS.gene41965 | 0.807321 | 5.35E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene41965 | 0.814175 | 1.76E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene41965 | 0.808521 | 2.97E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene41965 | 0.823988 | 1.03E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene41965 | 0.811099 | 8.29E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene41965 | 0.801988 | 6.94E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene41965 | 0.818283 | 2.13E-52 | -1.69E-46 |
| MS.gene057693 | MS.gene41965 | 0.801298 | 9.62E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene41965 | 0.829201 | 5.88E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene41965 | 0.820455 | 6.80E-53 | -1.69E-46 |
| MS.gene05954 | MS.gene41965 | 0.801228 | 9.94E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene41965 | 0.822188 | 2.71E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene41965 | 0.813342 | 2.69E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene41965 | 0.816801 | 4.58E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene41965 | -0.813581 | 2.38E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41965.t1 | MTR_3g109950 | 88.696 | 115 | 12 | 1 | 160 | 273 | 356 | 470 | 3.42e-60 | 197 |
| MS.gene41965.t1 | MTR_3g109950 | 48.879 | 223 | 72 | 5 | 1 | 217 | 126 | 312 | 2.59e-51 | 174 |
| MS.gene41965.t1 | MTR_3g109950 | 48.879 | 223 | 72 | 5 | 1 | 217 | 126 | 312 | 2.13e-51 | 174 |
| MS.gene41965.t1 | MTR_3g109950 | 92.500 | 80 | 6 | 0 | 167 | 246 | 364 | 443 | 4.59e-39 | 142 |
| MS.gene41965.t1 | MTR_3g109950 | 47.982 | 223 | 74 | 4 | 1 | 217 | 126 | 312 | 3.28e-51 | 173 |
| MS.gene41965.t1 | MTR_8g077830 | 66.087 | 115 | 38 | 1 | 160 | 273 | 355 | 469 | 2.11e-43 | 154 |
| MS.gene41965.t1 | MTR_8g077830 | 38.667 | 225 | 96 | 4 | 1 | 217 | 122 | 312 | 1.63e-40 | 146 |
| MS.gene41965.t1 | MTR_5g019950 | 37.220 | 223 | 99 | 5 | 1 | 218 | 129 | 315 | 6.39e-41 | 147 |
| MS.gene41965.t1 | MTR_5g019950 | 68.932 | 103 | 32 | 0 | 167 | 269 | 366 | 468 | 1.44e-35 | 132 |
| MS.gene41965.t1 | MTR_8g088080 | 64.912 | 114 | 39 | 1 | 160 | 272 | 363 | 476 | 3.10e-38 | 140 |
| MS.gene41965.t1 | MTR_8g088080 | 38.636 | 220 | 107 | 7 | 1 | 217 | 125 | 319 | 4.15e-35 | 131 |
| MS.gene41965.t1 | MTR_5g019970 | 66.990 | 103 | 34 | 0 | 167 | 269 | 6 | 108 | 1.82e-37 | 128 |
| MS.gene41965.t1 | MTR_8g088070 | 65.487 | 113 | 38 | 1 | 160 | 271 | 358 | 470 | 1.89e-37 | 138 |
| MS.gene41965.t1 | MTR_8g088070 | 38.073 | 218 | 112 | 6 | 1 | 217 | 119 | 314 | 7.77e-34 | 128 |
| MS.gene41965.t1 | MTR_1g026910 | 56.757 | 111 | 47 | 1 | 160 | 269 | 345 | 455 | 2.33e-35 | 132 |
| MS.gene41965.t1 | MTR_1g026910 | 43.094 | 181 | 87 | 5 | 1 | 179 | 106 | 272 | 2.71e-30 | 118 |
| MS.gene41965.t1 | MTR_7g103300 | 56.190 | 105 | 46 | 0 | 165 | 269 | 265 | 369 | 5.75e-34 | 126 |
| MS.gene41965.t1 | MTR_7g103300 | 40.828 | 169 | 80 | 6 | 1 | 167 | 20 | 170 | 6.53e-28 | 110 |
| MS.gene41965.t1 | MTR_7g103300 | 56.190 | 105 | 46 | 0 | 165 | 269 | 307 | 411 | 1.05e-33 | 127 |
| MS.gene41965.t1 | MTR_7g103300 | 40.828 | 169 | 80 | 6 | 1 | 167 | 62 | 212 | 1.06e-27 | 110 |
| MS.gene41965.t1 | MTR_7g103300 | 56.190 | 105 | 46 | 0 | 165 | 269 | 355 | 459 | 3.19e-33 | 126 |
| MS.gene41965.t1 | MTR_7g103300 | 40.828 | 169 | 80 | 6 | 1 | 167 | 110 | 260 | 1.31e-27 | 110 |
| MS.gene41965.t1 | MTR_1g026910 | 41.053 | 190 | 78 | 6 | 1 | 179 | 106 | 272 | 1.77e-30 | 118 |
| MS.gene41965.t1 | MTR_1g026910 | 56.818 | 88 | 37 | 1 | 160 | 246 | 345 | 432 | 6.05e-24 | 100 |
| MS.gene41965.t1 | MTR_1g061710 | 52.427 | 103 | 49 | 0 | 168 | 270 | 427 | 529 | 5.81e-29 | 115 |
| MS.gene41965.t1 | MTR_1g061710 | 37.870 | 169 | 89 | 4 | 1 | 168 | 111 | 264 | 1.44e-24 | 102 |
| MS.gene41965.t1 | MTR_7g103300 | 40.828 | 169 | 80 | 6 | 1 | 167 | 110 | 260 | 5.19e-28 | 110 |
| MS.gene41965.t1 | MTR_7g103300 | 40.828 | 169 | 80 | 6 | 1 | 167 | 110 | 260 | 6.72e-28 | 110 |
| MS.gene41965.t1 | MTR_7g103300 | 40.828 | 169 | 80 | 6 | 1 | 167 | 110 | 260 | 9.64e-28 | 111 |
| MS.gene41965.t1 | MTR_7g103300 | 56.044 | 91 | 40 | 0 | 165 | 255 | 355 | 445 | 3.55e-24 | 101 |
| MS.gene41965.t1 | MTR_3g110012 | 40.323 | 124 | 20 | 3 | 77 | 200 | 76 | 145 | 5.22e-15 | 70.9 |
| MS.gene41965.t1 | MTR_3g109980 | 40.323 | 124 | 20 | 3 | 77 | 200 | 76 | 145 | 5.22e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41965.t1 | AT2G25737 | 76.316 | 114 | 26 | 1 | 160 | 272 | 362 | 475 | 3.96e-48 | 166 |
| MS.gene41965.t1 | AT2G25737 | 43.421 | 228 | 82 | 4 | 1 | 217 | 127 | 318 | 1.02e-46 | 162 |
| MS.gene41965.t1 | AT2G25737 | 47.032 | 219 | 87 | 6 | 1 | 217 | 127 | 318 | 1.76e-47 | 162 |
| MS.gene41965.t1 | AT2G36630 | 49.524 | 105 | 53 | 0 | 165 | 269 | 352 | 456 | 1.96e-28 | 113 |
| MS.gene41965.t1 | AT2G36630 | 38.235 | 170 | 83 | 6 | 1 | 167 | 107 | 257 | 3.83e-26 | 107 |
| MS.gene41965.t1 | AT1G11540 | 53.125 | 64 | 29 | 1 | 1 | 63 | 19 | 82 | 3.50e-12 | 66.2 |
| MS.gene41965.t1 | AT1G11540 | 35.652 | 115 | 71 | 1 | 158 | 269 | 253 | 367 | 6.99e-11 | 62.4 |
| MS.gene41965.t1 | AT1G11540 | 53.125 | 64 | 29 | 1 | 1 | 63 | 102 | 165 | 5.77e-12 | 65.9 |
| MS.gene41965.t1 | AT1G61740 | 43.421 | 76 | 42 | 1 | 1 | 75 | 106 | 181 | 5.32e-11 | 62.8 |
Find 61 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTGCCGATCATGAATATA+TGG | 0.212904 | 6.4:-18595743 | MS.gene41965:CDS |
| AATGTATATTGGAAGGAGTT+TGG | 0.234623 | 6.4:-18596801 | MS.gene41965:CDS |
| CTATTTGCTGAAACGATTTC+CGG | 0.246931 | 6.4:-18597327 | MS.gene41965:CDS |
| TGGTATAGTCGGTGGATTGC+TGG | 0.276673 | 6.4:-18597574 | MS.gene41965:intron |
| AGAAGGCTGATCATCCTATT+TGG | 0.303986 | 6.4:-18596059 | MS.gene41965:CDS |
| ACTCATTCCAGGAGGCTTCC+AGG | 0.311492 | 6.4:-18597225 | MS.gene41965:intron |
| TCGGTGGATTGCTGGGACTA+GGG | 0.320262 | 6.4:-18597566 | MS.gene41965:CDS |
| ATGTATATTGGAAGGAGTTT+GGG | 0.321228 | 6.4:-18596800 | MS.gene41965:CDS |
| AAACGATTTCCGGTTCCTTA+TGG | 0.322506 | 6.4:-18597317 | MS.gene41965:intron |
| GCCAATCATTGACTATGATT+TGG | 0.335930 | 6.4:-18597895 | MS.gene41965:CDS |
| TTATAATTGAAAATGTATAT+TGG | 0.355167 | 6.4:-18596812 | MS.gene41965:CDS |
| TCAACGTTGTATTTCCTGAT+TGG | 0.361915 | 6.4:-18597821 | MS.gene41965:CDS |
| CTCATCATCTTTATTCTAGC+TGG | 0.396070 | 6.4:-18596026 | MS.gene41965:CDS |
| CTCATCTTGTTAGGTGGAGT+TGG | 0.402741 | 6.4:-18595787 | MS.gene41965:intron |
| ACCATTTGATTCTTGTCTCC+TGG | 0.405561 | 6.4:+18597207 | None:intergenic |
| AATATAGTGACAAGCCAATC+AGG | 0.423808 | 6.4:+18597807 | None:intergenic |
| GGTGACTACTATTGCAGCCT+TGG | 0.425883 | 6.4:-18596099 | MS.gene41965:CDS |
| TGAGAGATGCTCTTCCAAAT+AGG | 0.430670 | 6.4:+18596045 | None:intergenic |
| GCCAAATCATAGTCAATGAT+TGG | 0.441902 | 6.4:+18597894 | None:intergenic |
| TGGAGTTGGCATTTCAAATA+CGG | 0.443806 | 6.4:-18595773 | MS.gene41965:CDS |
| ATTCAACCTATGTTAATGCT+TGG | 0.473639 | 6.4:-18597864 | MS.gene41965:CDS |
| ACTACTATTGCAGCCTTGGT+TGG | 0.474031 | 6.4:-18596095 | MS.gene41965:CDS |
| GTCGGTGGATTGCTGGGACT+AGG | 0.483629 | 6.4:-18597567 | MS.gene41965:CDS |
| CACAGCTCTTTACTTGAGCC+TGG | 0.487045 | 6.4:-18596120 | MS.gene41965:intron |
| TTTGTTTCAGGTATGGTCAT+GGG | 0.488773 | 6.4:-18597975 | None:intergenic |
| GTTTGTTTCAGGTATGGTCA+TGG | 0.493247 | 6.4:-18597976 | None:intergenic |
| GGTATAGTCGGTGGATTGCT+GGG | 0.500421 | 6.4:-18597573 | MS.gene41965:intron |
| ATTGCCGATCATGAATATAT+GGG | 0.513117 | 6.4:-18595742 | MS.gene41965:CDS |
| CGGCACAAACCATAAGGAAC+CGG | 0.514574 | 6.4:+18597308 | None:intergenic |
| AATTGAAAATGTATATTGGA+AGG | 0.517889 | 6.4:-18596808 | MS.gene41965:CDS |
| TTAATGCTTGGAATCAGCAT+TGG | 0.528414 | 6.4:-18597852 | MS.gene41965:CDS |
| CGGTGGATTGCTGGGACTAG+GGG | 0.528901 | 6.4:-18597565 | MS.gene41965:CDS |
| TTTGAGAATATCTGCAAGTA+CGG | 0.532267 | 6.4:-18595718 | MS.gene41965:CDS |
| CTGATTCCAAGCATTAACAT+AGG | 0.546907 | 6.4:+18597858 | None:intergenic |
| CAACTGTCTACTACAACCTC+AGG | 0.551520 | 6.4:-18597941 | MS.gene41965:CDS |
| TTGAAACTCTCGATTGAGAA+GGG | 0.551564 | 6.4:+18597502 | None:intergenic |
| TGTCATTGCGAAAGTGGTTG+TGG | 0.554558 | 6.4:+18596305 | None:intergenic |
| CACAATATGTTGTCCAACCA+AGG | 0.555321 | 6.4:+18596082 | None:intergenic |
| TCCAGGAGACAAGAATCAAA+TGG | 0.557287 | 6.4:-18597208 | MS.gene41965:intron |
| CTCCTCGTCTATGTCTGTTG+TGG | 0.560055 | 6.4:-18596280 | MS.gene41965:CDS |
| GGAGAATGTCATTGCGAAAG+TGG | 0.561309 | 6.4:+18596299 | None:intergenic |
| TTGGGCTTCTACGATTTGTG+TGG | 0.561318 | 6.4:-18596782 | MS.gene41965:CDS |
| TTTATCAGTGCAATCTCACT+AGG | 0.570312 | 6.4:-18595996 | MS.gene41965:intron |
| GGAGAATGTCATTGCAAAAG+TGG | 0.571321 | 6.4:+18597373 | None:intergenic |
| AAATCCCATATATTCATGAT+CGG | 0.571395 | 6.4:+18595738 | None:intergenic |
| TGTCATTGCAAAAGTGGTCG+TGG | 0.573149 | 6.4:+18597379 | None:intergenic |
| TTTGAAACTCTCGATTGAGA+AGG | 0.579927 | 6.4:+18597501 | None:intergenic |
| GTCAATGATTGGCATATCCA+AGG | 0.593318 | 6.4:+18597905 | None:intergenic |
| CCTTGCACTACAGATTGCCA+AGG | 0.596899 | 6.4:-18596751 | MS.gene41965:intron |
| CCTTGGCAATCTGTAGTGCA+AGG | 0.598586 | 6.4:+18596751 | None:intergenic |
| CAGGCTGAGACATCCTACCT+TGG | 0.609778 | 6.4:-18597922 | MS.gene41965:CDS |
| AGGCTGCAATAGTAGTCACC+AGG | 0.612521 | 6.4:+18596102 | None:intergenic |
| ATGATTGGCATATCCAAGGT+AGG | 0.612586 | 6.4:+18597909 | None:intergenic |
| CGGAACGAACAATAAGGAAG+CGG | 0.618097 | 6.4:+18596234 | None:intergenic |
| GGTGGATTGCTGGGACTAGG+GGG | 0.630581 | 6.4:-18597564 | MS.gene41965:CDS |
| AGGTAGGATGTCTCAGCCTG+AGG | 0.637706 | 6.4:+18597925 | None:intergenic |
| CAATCGAGAGTTTCAAACTG+CGG | 0.661783 | 6.4:-18597495 | MS.gene41965:intron |
| GCTTGGAATCAGCATTGGAG+TGG | 0.667172 | 6.4:-18597847 | MS.gene41965:CDS |
| TTGGACAACATATTGTGAGA+AGG | 0.670015 | 6.4:-18596076 | MS.gene41965:CDS |
| TTCTACAACAGACATAGACG+AGG | 0.746210 | 6.4:+18597352 | None:intergenic |
| TTCCACAACAGACATAGACG+AGG | 0.749880 | 6.4:+18596278 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACCAAATTATTATTAAATA+TGG | + | chr6.4:18596698-18596717 | None:intergenic | 10.0% |
| !! | TTATAATTGAAAATGTATAT+TGG | - | chr6.4:18596862-18596881 | MS.gene41965:intron | 10.0% |
| !! | TTCCATATTTAATAATAATT+TGG | - | chr6.4:18596693-18596712 | MS.gene41965:intron | 10.0% |
| !! | AACGAATTATTATATCAATA+AGG | + | chr6.4:18596829-18596848 | None:intergenic | 15.0% |
| !! | ATTAATTGAAAGTTATAAAC+TGG | + | chr6.4:18596983-18597002 | None:intergenic | 15.0% |
| !! | TACTACATGATATATTAAAT+GGG | + | chr6.4:18596036-18596055 | None:intergenic | 15.0% |
| !!! | CTTTATATTATATTCAGTTT+TGG | - | chr6.4:18597487-18597506 | MS.gene41965:intron | 15.0% |
| !! | AATTGAAAATGTATATTGGA+AGG | - | chr6.4:18596866-18596885 | MS.gene41965:intron | 20.0% |
| !! | ACAAACATTGTATCAATATA+TGG | - | chr6.4:18597847-18597866 | MS.gene41965:CDS | 20.0% |
| !! | GTACTACATGATATATTAAA+TGG | + | chr6.4:18596037-18596056 | None:intergenic | 20.0% |
| ! | AAAACAAAATAAAGTTGACC+TGG | - | chr6.4:18596524-18596543 | MS.gene41965:intron | 25.0% |
| ! | AAATCCCATATATTCATGAT+CGG | + | chr6.4:18597939-18597958 | None:intergenic | 25.0% |
| ! | ATAAGAGTAAAAATATTCCG+AGG | + | chr6.4:18595942-18595961 | None:intergenic | 25.0% |
| ! | ATAATAATTCGTTCAATTGC+AGG | - | chr6.4:18596836-18596855 | MS.gene41965:intron | 25.0% |
| ! | GGCAGTTTAGATTAAAAAAA+TGG | - | chr6.4:18597814-18597833 | MS.gene41965:CDS | 25.0% |
| ! | TAAGGAAACCATAATGAAAA+AGG | - | chr6.4:18596009-18596028 | MS.gene41965:CDS | 25.0% |
| ! | TCACATTTCAAAAAGTTCAT+TGG | + | chr6.4:18597532-18597551 | None:intergenic | 25.0% |
| !! | TTGCTTATTGTTCTTTTCTT+AGG | - | chr6.4:18595888-18595907 | MS.gene41965:intron | 25.0% |
| !!! | CACTAATGATCTTTTTTCAA+TGG | - | chr6.4:18596739-18596758 | MS.gene41965:intron | 25.0% |
| !!! | GAATATTTTTACTCTTATGC+AGG | - | chr6.4:18595944-18595963 | MS.gene41965:intron | 25.0% |
| !!! | GGTCAACTTTATTTTGTTTT+TGG | + | chr6.4:18596524-18596543 | None:intergenic | 25.0% |
| !!! | GTACAAGAGAGTATTATATT+GGG | - | chr6.4:18596658-18596677 | MS.gene41965:intron | 25.0% |
| !!! | TACAAGAGAGTATTATATTG+GGG | - | chr6.4:18596659-18596678 | MS.gene41965:intron | 25.0% |
| !!! | TTTTTTTCACTCATCTTGTT+AGG | - | chr6.4:18597878-18597897 | MS.gene41965:CDS | 25.0% |
| AAATGTAGAGATCTTGAAAC+TGG | - | chr6.4:18597793-18597812 | MS.gene41965:CDS | 30.0% | |
| AATGTATATTGGAAGGAGTT+TGG | - | chr6.4:18596873-18596892 | MS.gene41965:intron | 30.0% | |
| ACAACCCAAATCCAAAAAAT+GGG | + | chr6.4:18597712-18597731 | None:intergenic | 30.0% | |
| ACAAGTAAATTTACCTCTTG+TGG | - | chr6.4:18597108-18597127 | MS.gene41965:intron | 30.0% | |
| AGCATGATTCCTAATTGAAT+CGG | - | chr6.4:18597321-18597340 | MS.gene41965:CDS | 30.0% | |
| AGTATGATTCCTAATTGGAT+CGG | - | chr6.4:18596247-18596266 | MS.gene41965:CDS | 30.0% | |
| ATGTATATTGGAAGGAGTTT+GGG | - | chr6.4:18596874-18596893 | MS.gene41965:intron | 30.0% | |
| ATTCAACCTATGTTAATGCT+TGG | - | chr6.4:18595810-18595829 | MS.gene41965:intron | 30.0% | |
| ATTGCCGATCATGAATATAT+GGG | - | chr6.4:18597932-18597951 | MS.gene41965:CDS | 30.0% | |
| CAACAAAAATGTCTAATTCC+TGG | + | chr6.4:18595917-18595936 | None:intergenic | 30.0% | |
| TCTGACATCAGGAAAAATAA+TGG | + | chr6.4:18596551-18596570 | None:intergenic | 30.0% | |
| TGGTTAGTATGATTCCTAAT+TGG | - | chr6.4:18596242-18596261 | MS.gene41965:intron | 30.0% | |
| TTGTCCTTCTAATCTAATGA+CGG | + | chr6.4:18596785-18596804 | None:intergenic | 30.0% | |
| TTTGAGAATATCTGCAAGTA+CGG | - | chr6.4:18597956-18597975 | MS.gene41965:CDS | 30.0% | |
| ! | CACTGTATTTTCACTATCTT+TGG | - | chr6.4:18596068-18596087 | MS.gene41965:CDS | 30.0% |
| ! | TCAATAAGGTGTCAATTTAG+TGG | + | chr6.4:18596815-18596834 | None:intergenic | 30.0% |
| !! | AAATGGGACCTTTTTCATTA+TGG | + | chr6.4:18596020-18596039 | None:intergenic | 30.0% |
| !! | ACAAGAGAGTATTATATTGG+GGG | - | chr6.4:18596660-18596679 | MS.gene41965:intron | 30.0% |
| !! | CAACAAAGGCATTCTTTAAA+GGG | - | chr6.4:18595972-18595991 | MS.gene41965:intron | 30.0% |
| !! | CGTACAAGAGAGTATTATAT+TGG | - | chr6.4:18596657-18596676 | MS.gene41965:intron | 30.0% |
| !! | TCAACAAAGGCATTCTTTAA+AGG | - | chr6.4:18595971-18595990 | MS.gene41965:intron | 30.0% |
| !! | TTAGTGTCACTTTGATCAAA+TGG | + | chr6.4:18596725-18596744 | None:intergenic | 30.0% |
| !!! | AACCTATTTTAACTCATTCC+AGG | - | chr6.4:18596438-18596457 | MS.gene41965:intron | 30.0% |
| !!! | ATTTCTTTTTGGTTAGGTTC+AGG | - | chr6.4:18596580-18596599 | MS.gene41965:intron | 30.0% |
| !!! | CTTACCCATTTTTTGGATTT+GGG | - | chr6.4:18597705-18597724 | MS.gene41965:intron | 30.0% |
| !!! | TGTTCGATTTCTTTTTGGTT+AGG | - | chr6.4:18596574-18596593 | MS.gene41965:intron | 30.0% |
| AACTCCGTCATTAGATTAGA+AGG | - | chr6.4:18596778-18596797 | MS.gene41965:CDS | 35.0% | |
| AAGTAAGTTAGAAGCTATCG+CGG | + | chr6.4:18597463-18597482 | None:intergenic | 35.0% | |
| AATATAGTGACAAGCCAATC+AGG | + | chr6.4:18595870-18595889 | None:intergenic | 35.0% | |
| ACCAAATGTTGCCATTGAAA+AGG | - | chr6.4:18596627-18596646 | MS.gene41965:intron | 35.0% | |
| ACGATTTACATACTGCAGAT+TGG | + | chr6.4:18597268-18597287 | None:intergenic | 35.0% | |
| AGAAGACATCCGATTCAATT+AGG | + | chr6.4:18597333-18597352 | None:intergenic | 35.0% | |
| ATCAGGAAAAATAATGGTCC+AGG | + | chr6.4:18596545-18596564 | None:intergenic | 35.0% | |
| CACAACCCAAATCCAAAAAA+TGG | + | chr6.4:18597713-18597732 | None:intergenic | 35.0% | |
| CGATTTACATACTGCAGATT+GGG | + | chr6.4:18597267-18597286 | None:intergenic | 35.0% | |
| CTCATCATCTTTATTCTAGC+TGG | - | chr6.4:18597648-18597667 | MS.gene41965:intron | 35.0% | |
| CTCCTGGAATGAGTTAAAAT+AGG | + | chr6.4:18596443-18596462 | None:intergenic | 35.0% | |
| CTGATTCCAAGCATTAACAT+AGG | + | chr6.4:18595819-18595838 | None:intergenic | 35.0% | |
| GAATATAAAGCTCTTCCAAC+TGG | - | chr6.4:18596604-18596623 | MS.gene41965:intron | 35.0% | |
| GATTGCCGATCATGAATATA+TGG | - | chr6.4:18597931-18597950 | MS.gene41965:CDS | 35.0% | |
| GCCAAATCATAGTCAATGAT+TGG | + | chr6.4:18595783-18595802 | None:intergenic | 35.0% | |
| TACATGTTCTGCAGCATATT+GGG | - | chr6.4:18597072-18597091 | MS.gene41965:intron | 35.0% | |
| TAGAAAGTTAGAAGCTATCG+CGG | + | chr6.4:18596389-18596408 | None:intergenic | 35.0% | |
| TATCCTGATCATCAAACAGT+TGG | - | chr6.4:18596222-18596241 | MS.gene41965:intron | 35.0% | |
| TCAACGTTGTATTTCCTGAT+TGG | - | chr6.4:18595853-18595872 | MS.gene41965:intron | 35.0% | |
| TGATGATCAGGATAAGAGAA+GGG | + | chr6.4:18596216-18596235 | None:intergenic | 35.0% | |
| TGCAGTTAGTCACATTTAGA+CGG | - | chr6.4:18597757-18597776 | MS.gene41965:intron | 35.0% | |
| TGGAGTTGGCATTTCAAATA+CGG | - | chr6.4:18597901-18597920 | MS.gene41965:CDS | 35.0% | |
| TTAATGCTTGGAATCAGCAT+TGG | - | chr6.4:18595822-18595841 | MS.gene41965:intron | 35.0% | |
| TTGAAACTCTCGATTGAGAA+GGG | + | chr6.4:18596175-18596194 | None:intergenic | 35.0% | |
| TTGGACAACATATTGTGAGA+AGG | - | chr6.4:18597598-18597617 | MS.gene41965:intron | 35.0% | |
| TTTATCAGTGCAATCTCACT+AGG | - | chr6.4:18597678-18597697 | MS.gene41965:intron | 35.0% | |
| ! | CTATTTGCTGAAACGATTTC+CGG | - | chr6.4:18596347-18596366 | MS.gene41965:intron | 35.0% |
| ! | GAGTGTGTTCGATTTCTTTT+TGG | - | chr6.4:18596569-18596588 | MS.gene41965:intron | 35.0% |
| ! | GCCAATCATTGACTATGATT+TGG | - | chr6.4:18595779-18595798 | MS.gene41965:intron | 35.0% |
| ! | TAACCAACTGTTTGATGATC+AGG | + | chr6.4:18596228-18596247 | None:intergenic | 35.0% |
| ! | TAGACATTTTTGTTGCTCCT+CGG | - | chr6.4:18595922-18595941 | MS.gene41965:intron | 35.0% |
| ! | TCCTTTTCAATGGCAACATT+TGG | + | chr6.4:18596631-18596650 | None:intergenic | 35.0% |
| ! | TGTTCTTTTCTTAGGTAACC+AGG | - | chr6.4:18595896-18595915 | MS.gene41965:intron | 35.0% |
| ! | TTGATGATCAGGATAAGAGA+AGG | + | chr6.4:18596217-18596236 | None:intergenic | 35.0% |
| ! | TTTGAAACTCTCGATTGAGA+AGG | + | chr6.4:18596176-18596195 | None:intergenic | 35.0% |
| ! | TTTTCACTCATCTTGTTAGG+TGG | - | chr6.4:18597881-18597900 | MS.gene41965:CDS | 35.0% |
| !! | TACGTCGTTTTCCTTTTCAA+TGG | + | chr6.4:18596641-18596660 | None:intergenic | 35.0% |
| !!! | AGGTAAGCTTACCCATTTTT+TGG | - | chr6.4:18597698-18597717 | MS.gene41965:intron | 35.0% |
| !!! | CTATTTTAACTCATTCCAGG+AGG | - | chr6.4:18596441-18596460 | MS.gene41965:intron | 35.0% |
| !!! | GCTTACCCATTTTTTGGATT+TGG | - | chr6.4:18597704-18597723 | MS.gene41965:intron | 35.0% |
| AAACGATTTCCGGTTCCTTA+TGG | - | chr6.4:18596357-18596376 | MS.gene41965:intron | 40.0% | |
| AAGAAAAGCGAAACCACAAG+AGG | + | chr6.4:18597124-18597143 | None:intergenic | 40.0% | |
| ACCATTTGATTCTTGTCTCC+TGG | + | chr6.4:18596470-18596489 | None:intergenic | 40.0% | |
| AGAAGACATCCGATCCAATT+AGG | + | chr6.4:18596259-18596278 | None:intergenic | 40.0% | |
| AGAAGGCTGATCATCCTATT+TGG | - | chr6.4:18597615-18597634 | MS.gene41965:intron | 40.0% | |
| ATGATTGGCATATCCAAGGT+AGG | + | chr6.4:18595768-18595787 | None:intergenic | 40.0% | |
| CAATCGAGAGTTTCAAACTG+CGG | - | chr6.4:18596179-18596198 | MS.gene41965:intron | 40.0% | |
| CACAATATGTTGTCCAACCA+AGG | + | chr6.4:18597595-18597614 | None:intergenic | 40.0% | |
| CTACATGTTCTGCAGCATAT+TGG | - | chr6.4:18597071-18597090 | MS.gene41965:intron | 40.0% | |
| GGAGAATGTCATTGCAAAAG+TGG | + | chr6.4:18596304-18596323 | None:intergenic | 40.0% | |
| GTCAATGATTGGCATATCCA+AGG | + | chr6.4:18595772-18595791 | None:intergenic | 40.0% | |
| TCCAGGAGACAAGAATCAAA+TGG | - | chr6.4:18596466-18596485 | MS.gene41965:intron | 40.0% | |
| TGAGAGATGCTCTTCCAAAT+AGG | + | chr6.4:18597632-18597651 | None:intergenic | 40.0% | |
| TGTGATGACAGAACAAACCT+TGG | + | chr6.4:18596943-18596962 | None:intergenic | 40.0% | |
| TTATGCAGGCACATCAACAA+AGG | - | chr6.4:18595958-18595977 | MS.gene41965:intron | 40.0% | |
| TTCTACAACAGACATAGACG+AGG | + | chr6.4:18596325-18596344 | None:intergenic | 40.0% | |
| ! | TCTTTAAAGGGCTTGAGACA+TGG | - | chr6.4:18595984-18596003 | MS.gene41965:intron | 40.0% |
| ! | TTTCACTATCTTTGGTGTGC+TGG | - | chr6.4:18596076-18596095 | MS.gene41965:CDS | 40.0% |
| !! | AGAGAGTATTATATTGGGGG+AGG | - | chr6.4:18596663-18596682 | MS.gene41965:intron | 40.0% |
| !! | GAGAGTATTATATTGGGGGA+GGG | - | chr6.4:18596664-18596683 | MS.gene41965:intron | 40.0% |
| !!! | GATCTTTTTTCAATGGTCCC+TGG | - | chr6.4:18596746-18596765 | MS.gene41965:intron | 40.0% |
| ACGGAGTTCAAATTCCTCCA+GGG | + | chr6.4:18596766-18596785 | None:intergenic | 45.0% | |
| ACTACTATTGCAGCCTTGGT+TGG | - | chr6.4:18597579-18597598 | MS.gene41965:intron | 45.0% | |
| AGGGCTTGAGACATGGAATA+AGG | - | chr6.4:18595991-18596010 | MS.gene41965:intron | 45.0% | |
| ATCGAACACACTCTGACATC+AGG | + | chr6.4:18596562-18596581 | None:intergenic | 45.0% | |
| ATGGCAACATTTGGTCCAGT+TGG | + | chr6.4:18596622-18596641 | None:intergenic | 45.0% | |
| CAACTGTCTACTACAACCTC+AGG | - | chr6.4:18595733-18595752 | MS.gene41965:CDS | 45.0% | |
| CGGAACGAACAATAAGGAAG+CGG | + | chr6.4:18597443-18597462 | None:intergenic | 45.0% | |
| CTATCGCGGAACGAACAATA+AGG | + | chr6.4:18597449-18597468 | None:intergenic | 45.0% | |
| CTCATCTTGTTAGGTGGAGT+TGG | - | chr6.4:18597887-18597906 | MS.gene41965:CDS | 45.0% | |
| GAATCGGATGTCTTCTGTGT+AGG | - | chr6.4:18597337-18597356 | MS.gene41965:CDS | 45.0% | |
| GGAGAATGTCATTGCGAAAG+TGG | + | chr6.4:18597378-18597397 | None:intergenic | 45.0% | |
| TGTCATTGCAAAAGTGGTCG+TGG | + | chr6.4:18596298-18596317 | None:intergenic | 45.0% | |
| TGTCATTGCGAAAGTGGTTG+TGG | + | chr6.4:18597372-18597391 | None:intergenic | 45.0% | |
| TTCCACAACAGACATAGACG+AGG | + | chr6.4:18597399-18597418 | None:intergenic | 45.0% | |
| TTGGGCTTCTACGATTTGTG+TGG | - | chr6.4:18596892-18596911 | MS.gene41965:intron | 45.0% | |
| !! | ACCCCTAGCTCTAGAAAAAG+CGG | + | chr6.4:18596152-18596171 | None:intergenic | 45.0% |
| !! | ACTAGGGGGCAGATTTGTTA+TGG | - | chr6.4:18596124-18596143 | MS.gene41965:intron | 45.0% |
| !! | CTAGGGGGCAGATTTGTTAT+GGG | - | chr6.4:18596125-18596144 | MS.gene41965:intron | 45.0% |
| !!! | CTTTTTTCAATGGTCCCTGG+AGG | - | chr6.4:18596749-18596768 | MS.gene41965:intron | 45.0% |
| !!! | GTCCGCTTTTTCTAGAGCTA+GGG | - | chr6.4:18596147-18596166 | MS.gene41965:intron | 45.0% |
| !!! | TCCGCTTTTTCTAGAGCTAG+GGG | - | chr6.4:18596148-18596167 | MS.gene41965:intron | 45.0% |
| AGGCTGCAATAGTAGTCACC+AGG | + | chr6.4:18597575-18597594 | None:intergenic | 50.0% | |
| CACAGCTCTTTACTTGAGCC+TGG | - | chr6.4:18597554-18597573 | MS.gene41965:CDS | 50.0% | |
| CCTTGCACTACAGATTGCCA+AGG | - | chr6.4:18596923-18596942 | MS.gene41965:intron | 50.0% | |
| CCTTGGCAATCTGTAGTGCA+AGG | + | chr6.4:18596926-18596945 | None:intergenic | 50.0% | |
| CGGCACAAACCATAAGGAAC+CGG | + | chr6.4:18596369-18596388 | None:intergenic | 50.0% | |
| CTATCGCGGCACAAACCATA+AGG | + | chr6.4:18596375-18596394 | None:intergenic | 50.0% | |
| CTCCTCGTCTATGTCTGTTG+TGG | - | chr6.4:18596320-18596339 | MS.gene41965:intron | 50.0% | |
| GACGGAGTTCAAATTCCTCC+AGG | + | chr6.4:18596767-18596786 | None:intergenic | 50.0% | |
| GGATCGGATGTCTTCTTTGC+AGG | - | chr6.4:18596263-18596282 | MS.gene41965:CDS | 50.0% | |
| GGTGACTACTATTGCAGCCT+TGG | - | chr6.4:18597575-18597594 | MS.gene41965:intron | 50.0% | |
| ! | ACTATCTTTGGTGTGCTGGC+TGG | - | chr6.4:18596080-18596099 | MS.gene41965:CDS | 50.0% |
| ! | GCTTGGAATCAGCATTGGAG+TGG | - | chr6.4:18595827-18595846 | MS.gene41965:intron | 50.0% |
| !! | GGTATAGTCGGTGGATTGCT+GGG | - | chr6.4:18596101-18596120 | MS.gene41965:CDS | 50.0% |
| !! | TGGTATAGTCGGTGGATTGC+TGG | - | chr6.4:18596100-18596119 | MS.gene41965:CDS | 50.0% |
| !!! | GGTCCGCTTTTTCTAGAGCT+AGG | - | chr6.4:18596146-18596165 | MS.gene41965:intron | 50.0% |
| ACTCATTCCAGGAGGCTTCC+AGG | - | chr6.4:18596449-18596468 | MS.gene41965:intron | 55.0% | |
| AGGTAGGATGTCTCAGCCTG+AGG | + | chr6.4:18595752-18595771 | None:intergenic | 55.0% | |
| CAGGCTGAGACATCCTACCT+TGG | - | chr6.4:18595752-18595771 | MS.gene41965:CDS | 55.0% | |
| !! | GGTGTGCTGGCTGGTATAGT+CGG | - | chr6.4:18596089-18596108 | MS.gene41965:CDS | 55.0% |
| !! | TCGGTGGATTGCTGGGACTA+GGG | - | chr6.4:18596108-18596127 | MS.gene41965:CDS | 55.0% |
| CTTGTCTCCTGGAAGCCTCC+TGG | + | chr6.4:18596459-18596478 | None:intergenic | 60.0% | |
| !! | CGGTGGATTGCTGGGACTAG+GGG | - | chr6.4:18596109-18596128 | MS.gene41965:CDS | 60.0% |
| !! | GGTGGATTGCTGGGACTAGG+GGG | - | chr6.4:18596110-18596129 | MS.gene41965:CDS | 60.0% |
| !! | GTCGGTGGATTGCTGGGACT+AGG | - | chr6.4:18596107-18596126 | MS.gene41965:CDS | 60.0% |
| !! | GTGCTGGCTGGTATAGTCGG+TGG | - | chr6.4:18596092-18596111 | MS.gene41965:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 18595711 | 18597985 | 18595711 | ID=MS.gene41965 |
| chr6.4 | mRNA | 18595711 | 18597985 | 18595711 | ID=MS.gene41965.t1;Parent=MS.gene41965 |
| chr6.4 | exon | 18597787 | 18597985 | 18597787 | ID=MS.gene41965.t1.exon1;Parent=MS.gene41965.t1 |
| chr6.4 | CDS | 18597787 | 18597985 | 18597787 | ID=cds.MS.gene41965.t1;Parent=MS.gene41965.t1 |
| chr6.4 | exon | 18597496 | 18597588 | 18597496 | ID=MS.gene41965.t1.exon2;Parent=MS.gene41965.t1 |
| chr6.4 | CDS | 18597496 | 18597588 | 18597496 | ID=cds.MS.gene41965.t1;Parent=MS.gene41965.t1 |
| chr6.4 | exon | 18597318 | 18597411 | 18597318 | ID=MS.gene41965.t1.exon3;Parent=MS.gene41965.t1 |
| chr6.4 | CDS | 18597318 | 18597411 | 18597318 | ID=cds.MS.gene41965.t1;Parent=MS.gene41965.t1 |
| chr6.4 | exon | 18597209 | 18597236 | 18597209 | ID=MS.gene41965.t1.exon4;Parent=MS.gene41965.t1 |
| chr6.4 | CDS | 18597209 | 18597236 | 18597209 | ID=cds.MS.gene41965.t1;Parent=MS.gene41965.t1 |
| chr6.4 | exon | 18596752 | 18596838 | 18596752 | ID=MS.gene41965.t1.exon5;Parent=MS.gene41965.t1 |
| chr6.4 | CDS | 18596752 | 18596838 | 18596752 | ID=cds.MS.gene41965.t1;Parent=MS.gene41965.t1 |
| chr6.4 | exon | 18596244 | 18596337 | 18596244 | ID=MS.gene41965.t1.exon6;Parent=MS.gene41965.t1 |
| chr6.4 | CDS | 18596244 | 18596337 | 18596244 | ID=cds.MS.gene41965.t1;Parent=MS.gene41965.t1 |
| chr6.4 | exon | 18595997 | 18596137 | 18595997 | ID=MS.gene41965.t1.exon7;Parent=MS.gene41965.t1 |
| chr6.4 | CDS | 18595997 | 18596137 | 18595997 | ID=cds.MS.gene41965.t1;Parent=MS.gene41965.t1 |
| chr6.4 | exon | 18595711 | 18595796 | 18595711 | ID=MS.gene41965.t1.exon8;Parent=MS.gene41965.t1 |
| chr6.4 | CDS | 18595711 | 18595796 | 18595711 | ID=cds.MS.gene41965.t1;Parent=MS.gene41965.t1 |
| Gene Sequence |
| Protein sequence |
