AlfalfaGEDB | MS.gene43162

M. sativa cultivar XinJiangDaYe / MS.gene43162

KEGG: -
GO: -
PFAM: PF03018.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43162.t1	XP_003621654.1	95.6	390	16	1	1	390	1	389	1.00E-177	632.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43162.t1	O80630	44.7	380	137	8	15	389	8	319	1.8e-74	281.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43162.t1	G7KSY8	95.6	390	16	1	1	390	1	389	7.2e-178	632.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene43162	0.81585	7.48E-52	-1.69E-46
MS.gene049549	MS.gene43162	0.800027	1.75E-48	-1.69E-46
MS.gene050133	MS.gene43162	0.822213	2.67E-53	-1.69E-46
MS.gene050329	MS.gene43162	0.825444	4.67E-54	-1.69E-46
MS.gene050426	MS.gene43162	0.801823	7.51E-49	-1.69E-46
MS.gene051552	MS.gene43162	0.811071	8.41E-51	-1.69E-46
MS.gene051996	MS.gene43162	0.847194	1.35E-59	-1.69E-46
MS.gene052011	MS.gene43162	0.813903	2.02E-51	-1.69E-46
MS.gene052223	MS.gene43162	0.855039	8.24E-62	-1.69E-46
MS.gene052706	MS.gene43162	0.814317	1.64E-51	-1.69E-46
MS.gene054138	MS.gene43162	0.82018	7.86E-53	-1.69E-46
MS.gene054277	MS.gene43162	0.813814	2.12E-51	-1.69E-46
MS.gene054742	MS.gene43162	0.847429	1.16E-59	-1.69E-46
MS.gene055595	MS.gene43162	0.816376	5.71E-52	-1.69E-46
MS.gene055597	MS.gene43162	0.806396	8.39E-50	-1.69E-46
MS.gene055601	MS.gene43162	0.815844	7.51E-52	-1.69E-46
MS.gene056330	MS.gene43162	0.844883	5.74E-59	-1.69E-46
MS.gene056680	MS.gene43162	0.801862	7.37E-49	-1.69E-46
MS.gene056690	MS.gene43162	0.810777	9.74E-51	-1.69E-46
MS.gene056691	MS.gene43162	0.822678	2.08E-53	-1.69E-46
MS.gene056899	MS.gene43162	0.829787	4.23E-55	-1.69E-46
MS.gene056920	MS.gene43162	0.85567	5.40E-62	-1.69E-46
MS.gene056922	MS.gene43162	0.825229	5.25E-54	-1.69E-46
MS.gene056923	MS.gene43162	0.851712	7.43E-61	-1.69E-46
MS.gene056924	MS.gene43162	0.855153	7.64E-62	-1.69E-46
MS.gene056925	MS.gene43162	0.814307	1.65E-51	-1.69E-46
MS.gene057261	MS.gene43162	0.825217	5.29E-54	-1.69E-46
MS.gene059043	MS.gene43162	0.817334	3.48E-52	-1.69E-46
MS.gene059328	MS.gene43162	0.836291	1.02E-56	-1.69E-46
MS.gene059402	MS.gene43162	0.800424	1.45E-48	-1.69E-46
MS.gene060087	MS.gene43162	0.832862	7.42E-56	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43162.t1	MTR_7g021300	96.154	390	14	1	1	390	1	389	0.0	741
MS.gene43162.t1	MTR_1g115510	62.060	398	98	7	1	390	1	353	1.31e-153	437
MS.gene43162.t1	MTR_4g062460	45.957	235	109	6	159	388	36	257	1.52e-59	194
MS.gene43162.t1	MTR_4g062520	43.220	236	120	6	157	389	78	302	6.60e-44	154
MS.gene43162.t1	MTR_4g062470	43.220	236	119	6	157	389	80	303	1.13e-43	154
MS.gene43162.t1	MTR_1g046800	39.344	244	115	9	154	388	29	248	2.50e-39	141
MS.gene43162.t1	MTR_1g046500	37.097	248	115	7	154	388	29	248	3.89e-38	138
MS.gene43162.t1	MTR_1g046490	35.060	251	133	7	147	388	5	234	2.88e-34	127
MS.gene43162.t1	MTR_1g115515	43.443	122	63	2	268	387	114	231	1.62e-21	92.8
MS.gene43162.t1	MTR_4g122110	35.294	102	63	1	264	365	60	158	2.98e-12	65.1
MS.gene43162.t1	MTR_1g054525	31.690	142	83	5	249	388	60	189	2.14e-11	63.2
MS.gene43162.t1	MTR_4g013310	31.356	118	70	4	272	388	87	194	2.51e-11	62.8
MS.gene43162.t1	MTR_4g122130	31.624	117	74	3	250	365	47	158	2.83e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43162.t1	AT2G39430	61.765	238	87	4	156	389	82	319	1.58e-91	278
MS.gene43162.t1	AT3G55230	58.898	236	93	4	158	389	67	302	1.36e-83	257
MS.gene43162.t1	AT1G07730	36.364	407	199	13	18	389	7	388	1.55e-52	179
MS.gene43162.t1	AT2G28670	45.106	235	113	5	163	389	209	435	6.31e-49	171
MS.gene43162.t1	AT2G28670	44.635	233	113	5	165	389	1	225	1.54e-48	164
MS.gene43162.t1	AT3G24020	34.894	235	133	5	154	388	27	241	2.53e-35	130
MS.gene43162.t1	AT4G13580	35.146	239	127	6	154	388	28	242	8.70e-35	129
MS.gene43162.t1	AT2G21100	40.426	94	49	3	271	362	75	163	6.15e-12	64.3
MS.gene43162.t1	AT2G21100	40.426	94	49	3	271	362	75	163	6.15e-12	64.3
MS.gene43162.t1	AT3G13650	33.051	118	71	4	271	384	73	186	4.60e-11	62.0

Find 115 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTGGTTGTGGAAGTTCTTC+TGG	0.253047	7.2:+78031093	None:intergenic
GGCACAAGTAACACTGTTTC+TGG	0.257411	7.2:-78030727	MS.gene43162:CDS
GTGACAATGCCGTTGAGTTT+AGG	0.257911	7.2:+78030817	None:intergenic
TGACAATGCCGTTGAGTTTA+GGG	0.260469	7.2:+78030818	None:intergenic
AACAATCTCTTCCCCATTAC+TGG	0.266043	7.2:-78030859	MS.gene43162:CDS
GTTTCGGCGGGTAATCTTCC+TGG	0.290220	7.2:-78030685	MS.gene43162:CDS
GGAAGTGGCACTTCAGCTTC+TGG	0.302216	7.2:+78031075	None:intergenic
GCACTTGGCGAAGCGGTAAT+AGG	0.311234	7.2:+78031258	None:intergenic
GGGAGTGGCACCTCAGCTTC+TGG	0.316576	7.2:+78031048	None:intergenic
GCTCATGTTCTTCCGTTAAC+TGG	0.330883	7.2:+78030611	None:intergenic
AATACTGCAACACCGGTTTC+TGG	0.347236	7.2:-78031207	MS.gene43162:CDS
GCTGTAACCGGCGTTGCATT+AGG	0.349697	7.2:+78031018	None:intergenic
GGCACTTCAGCTTCTGGTTG+TGG	0.365626	7.2:+78031081	None:intergenic
AATGGAATTCCTCCAGTAAT+GGG	0.368068	7.2:+78030847	None:intergenic
ATCACTGCTATCTCAGATTC+TGG	0.369049	7.2:+78030427	None:intergenic
TTCTTCATGCATGATATCCT+TGG	0.388666	7.2:-78030964	MS.gene43162:CDS
GAAGAGATTGTTATTAAGCT+TGG	0.391313	7.2:+78030870	None:intergenic
TTGAGTTTAGGGTTAACTAA+TGG	0.391976	7.2:+78030829	None:intergenic
TAAGTCTGTTTGGGATTCAT+AGG	0.393017	7.2:-78030459	MS.gene43162:CDS
ATGAATCCCAAACAGACTTA+TGG	0.396507	7.2:+78030462	None:intergenic
GATGACACCATAAGTCTGTT+TGG	0.397629	7.2:-78030469	MS.gene43162:CDS
TCAGCTTCTGGCGGTGGAAG+TGG	0.398294	7.2:+78031060	None:intergenic
GGCACCTCAGCTTCTGGCGG+TGG	0.398310	7.2:+78031054	None:intergenic
AACGACGGCTCTTTCGCTAT+AGG	0.401798	7.2:+78030991	None:intergenic
ATCTAGGATTCTTGCAGAGT+TGG	0.403022	7.2:+78031368	None:intergenic
ATGACACCATAAGTCTGTTT+GGG	0.406681	7.2:-78030468	MS.gene43162:CDS
GCACTGAGACCTACAAGGTT+TGG	0.410828	7.2:+78030781	None:intergenic
CACTGAGACCTACAAGGTTT+GGG	0.416021	7.2:+78030782	None:intergenic
CAGAACCAAACATAAGCTTC+TGG	0.418523	7.2:+78030650	None:intergenic
TACCTTCAGTAGGTTCTCTA+TGG	0.422239	7.2:+78030363	None:intergenic
AACAATCTCCCAAACCTTGT+AGG	0.423141	7.2:-78030790	MS.gene43162:CDS
TTCATGCATGATATCCTTGG+TGG	0.426597	7.2:-78030961	MS.gene43162:CDS
GAGCTGGATTCTTCTGTGAT+AGG	0.441022	7.2:-78030592	MS.gene43162:CDS
TCTGGTGTTTCATCTGTGGT+AGG	0.446439	7.2:+78031111	None:intergenic
AAGTTGTGATTAGGAGGAAA+AGG	0.462919	7.2:+78031400	None:intergenic
ACAGTCCAGAAGCTTATGTT+TGG	0.469595	7.2:-78030655	MS.gene43162:CDS
GCCGAGGGAATGGCAGCTCC+AGG	0.470305	7.2:+78031303	None:intergenic
TGCAGTATTGGTGGTGGTGG+TGG	0.470813	7.2:+78031221	None:intergenic
AGAAACCGGTGTTGCAGTAT+TGG	0.475414	7.2:+78031209	None:intergenic
GACTCTCGACCACAAGCTAT+AGG	0.482054	7.2:-78031339	MS.gene43162:CDS
TAGCAGTGATTGGTGGGACT+GGG	0.483880	7.2:-78030414	MS.gene43162:CDS
AACAGACTTATGGTGTCATC+AGG	0.488421	7.2:+78030472	None:intergenic
AGTGATTGATGACCAGTTAA+CGG	0.488842	7.2:-78030623	MS.gene43162:CDS
TAATGGAATTCCTCCAGTAA+TGG	0.492212	7.2:+78030846	None:intergenic
GGCGTTGCATTAGGAACAGC+CGG	0.498749	7.2:+78031027	None:intergenic
ACTGGAGGGATGTCCACAAC+TGG	0.504552	7.2:+78031141	None:intergenic
TTGGTATCTCCACCAGAAAC+CGG	0.506487	7.2:+78031195	None:intergenic
TATAGTTGTGGCCGAGGGAA+TGG	0.507876	7.2:+78031293	None:intergenic
AGATTACCCGCCGAAACAAA+AGG	0.508321	7.2:+78030691	None:intergenic
GTAGCAAACAGTGATGTAAC+CGG	0.514157	7.2:-78030904	MS.gene43162:CDS
CTGTGGTATAGTTGTGGCCG+AGG	0.515271	7.2:+78031287	None:intergenic
TCTGTGGTAGGACTCACAAC+TGG	0.518334	7.2:+78031123	None:intergenic
TTGTTATTAAGCTTGGAGAA+TGG	0.519150	7.2:+78030877	None:intergenic
ACCTGGAGCTGCCATTCCCT+CGG	0.520471	7.2:-78031304	MS.gene43162:CDS
CACCACCAATACTGCAACAC+CGG	0.520502	7.2:-78031214	MS.gene43162:CDS
CAGCCCCATCTGTGGTGTGT+TGG	0.521045	7.2:+78030338	None:intergenic
CGGCGGGTAATCTTCCTGGT+GGG	0.526197	7.2:-78030681	MS.gene43162:CDS
TTCTTCTGGTGTTTCATCTG+TGG	0.526975	7.2:+78031107	None:intergenic
TGAGACTAAAGGGTCTGGAT+TGG	0.527431	7.2:+78031176	None:intergenic
AGAAGCTGAGGTGCCACTCC+CGG	0.527504	7.2:-78031046	MS.gene43162:CDS
GGAATGGCAGCTCCAGGTCC+TGG	0.529908	7.2:+78031309	None:intergenic
TGTGTTGGTCTACCTTCAGT+AGG	0.533325	7.2:+78030353	None:intergenic
GCTGCAGGTGTTATCGCACT+TGG	0.538443	7.2:+78031243	None:intergenic
GAATCTGAGATAGCAGTGAT+TGG	0.539843	7.2:-78030424	MS.gene43162:CDS
ATAGCAGTGATTGGTGGGAC+TGG	0.541882	7.2:-78030415	MS.gene43162:CDS
GCATTAGGAACAGCCGGGAG+TGG	0.543527	7.2:+78031033	None:intergenic
CTGAGATAGCAGTGATTGGT+GGG	0.543629	7.2:-78030420	MS.gene43162:CDS
TGTTGCAGTATTGGTGGTGG+TGG	0.552086	7.2:+78031218	None:intergenic
ACTTCCACCGCCAGAAGCTG+AGG	0.569122	7.2:-78031058	MS.gene43162:CDS
CCATCAGCAAGAGTGGTAGC+AGG	0.569287	7.2:-78030931	MS.gene43162:CDS
CACGGGGCTGAGCATCATGA+TGG	0.571570	7.2:-78030496	MS.gene43162:CDS
CCTGCTACCACTCTTGCTGA+TGG	0.572490	7.2:+78030931	None:intergenic
TACTTGGCAAGCTCATTGGA+TGG	0.573716	7.2:-78030553	MS.gene43162:CDS
GAGCAGCACTGAGACCTACA+AGG	0.573733	7.2:+78030776	None:intergenic
TCGGCGGGTAATCTTCCTGG+TGG	0.575082	7.2:-78030682	MS.gene43162:CDS
GTCGAGAGTCAAATTCATCT+AGG	0.575928	7.2:+78031352	None:intergenic
TAGACCAACACACCACAGAT+GGG	0.578508	7.2:-78030342	MS.gene43162:CDS
AAGCTTGGAGAATGGTAAGC+CGG	0.579168	7.2:+78030885	None:intergenic
GTAGACCAACACACCACAGA+TGG	0.583033	7.2:-78030343	MS.gene43162:CDS
AGAAAATGAAGCACCAGTTG+TGG	0.586435	7.2:-78031154	MS.gene43162:CDS
AACCGGTGTTGCAGTATTGG+TGG	0.588594	7.2:+78031212	None:intergenic
TCTGAGATAGCAGTGATTGG+TGG	0.591085	7.2:-78030421	MS.gene43162:CDS
TTCTGGACTGTAAACCCACC+AGG	0.593913	7.2:+78030667	None:intergenic
ATAGGCAATCTACCAGGACC+TGG	0.594353	7.2:-78031321	MS.gene43162:CDS
ACTTATCTGTGGTATAGTTG+TGG	0.596688	7.2:+78031281	None:intergenic
CGGTGTTGCAGTATTGGTGG+TGG	0.599491	7.2:+78031215	None:intergenic
AGTGGCACCTCAGCTTCTGG+CGG	0.600283	7.2:+78031051	None:intergenic
TACCCGCCGAAACAAAAGGT+TGG	0.602825	7.2:+78030695	None:intergenic
ATCACATCCATCAGCAAGAG+TGG	0.602915	7.2:-78030938	MS.gene43162:CDS
CAAGCTATAGGCAATCTACC+AGG	0.605391	7.2:-78031327	MS.gene43162:CDS
GGTAGATTGCCTATAGCTTG+TGG	0.607651	7.2:+78031330	None:intergenic
GGCTGTTCCTAATGCAACGC+CGG	0.610188	7.2:-78031025	MS.gene43162:CDS
GTTAACGGAAGAACATGAGC+TGG	0.611367	7.2:-78030608	MS.gene43162:CDS
TGTGGTATAGTTGTGGCCGA+GGG	0.612073	7.2:+78031288	None:intergenic
GATGGTGTCAGCCCCATCTG+TGG	0.622116	7.2:+78030330	None:intergenic
ACTGCAACACCGGTTTCTGG+TGG	0.624340	7.2:-78031204	MS.gene43162:CDS
TCATACAAAATCCTGACACA+TGG	0.624737	7.2:-78031437	MS.gene43162:CDS
TGTTATCGCACTTGGCGAAG+CGG	0.635626	7.2:+78031251	None:intergenic
GGGAAGTATGAGAATGCTAG+AGG	0.638312	7.2:-78030394	MS.gene43162:CDS
TGGTAGGACTCACAACTGGA+GGG	0.642055	7.2:+78031127	None:intergenic
TTAGTTAACCCTAAACTCAA+CGG	0.648399	7.2:-78030826	MS.gene43162:CDS
ATGGAATTCCTCCAGTAATG+GGG	0.651194	7.2:+78030848	None:intergenic
TGCCATAGAGAACCTACTGA+AGG	0.654395	7.2:-78030365	MS.gene43162:CDS
GTGGTAGGACTCACAACTGG+AGG	0.657302	7.2:+78031126	None:intergenic
AATCTCTTCCCCATTACTGG+AGG	0.662173	7.2:-78030856	MS.gene43162:CDS
GCGTTGCATTAGGAACAGCC+GGG	0.662946	7.2:+78031028	None:intergenic
AGACCAACACACCACAGATG+GGG	0.667608	7.2:-78030341	MS.gene43162:CDS
TCTGTGATAGGAAGAGCACA+AGG	0.677760	7.2:-78030580	MS.gene43162:CDS
ACAAGTAACACTGTTTCTGG+CGG	0.689812	7.2:-78030724	MS.gene43162:CDS
GTAGATACTGAAATGCAAGA+TGG	0.703316	7.2:+78030312	None:intergenic
CTGTGATAGGAAGAGCACAA+GGG	0.711518	7.2:-78030579	MS.gene43162:CDS
GCGGTAATAGGACTTATCTG+TGG	0.711972	7.2:+78031270	None:intergenic
CTGATGGATGTGATCCACCA+AGG	0.726786	7.2:+78030947	None:intergenic
ACATTAGTCACTACTCAGTG+AGG	0.730761	7.2:+78030290	None:intergenic
TGCATGAAGAAAGAAAACGA+CGG	0.769494	7.2:+78030976	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	CAATCAAAAAAGTTGTGATT+AGG	+	chr7.2:78030362-78030381	None:intergenic	25.0%
	CACAAAAACAGTAATCACAA+TGG	+	chr7.2:78031234-78031253	None:intergenic	30.0%
	TCAAAAAAGTTGTGATTAGG+AGG	+	chr7.2:78030359-78030378	None:intergenic	30.0%
	TTAGTTAACCCTAAACTCAA+CGG	-	chr7.2:78030924-78030943	MS.gene43162:CDS	30.0%
!	AGGATTTTGTATGAAAACAC+TGG	+	chr7.2:78030307-78030326	None:intergenic	30.0%
!	GAAGAGATTGTTATTAAGCT+TGG	+	chr7.2:78030883-78030902	None:intergenic	30.0%
!	TTGAGTTTAGGGTTAACTAA+TGG	+	chr7.2:78030924-78030943	None:intergenic	30.0%
!	TTGTTATTAAGCTTGGAGAA+TGG	+	chr7.2:78030876-78030895	None:intergenic	30.0%
!!!	CTTCATTTTCTGAGACTAAA+GGG	+	chr7.2:78030587-78030606	None:intergenic	30.0%
	AAGTTGTGATTAGGAGGAAA+AGG	+	chr7.2:78030353-78030372	None:intergenic	35.0%
	AATGGAATTCCTCCAGTAAT+GGG	+	chr7.2:78030906-78030925	None:intergenic	35.0%
	ACTTATCTGTGGTATAGTTG+TGG	+	chr7.2:78030472-78030491	None:intergenic	35.0%
	ATGAATCCCAAACAGACTTA+TGG	+	chr7.2:78031291-78031310	None:intergenic	35.0%
	ATGACACCATAAGTCTGTTT+GGG	-	chr7.2:78031282-78031301	MS.gene43162:CDS	35.0%
	GTAGATACTGAAATGCAAGA+TGG	+	chr7.2:78031441-78031460	None:intergenic	35.0%
	TAATGGAATTCCTCCAGTAA+TGG	+	chr7.2:78030907-78030926	None:intergenic	35.0%
	TCATACAAAATCCTGACACA+TGG	-	chr7.2:78030313-78030332	MS.gene43162:CDS	35.0%
	TCGACTGTATTCAAAAACAG+TGG	-	chr7.2:78031002-78031021	MS.gene43162:CDS	35.0%
	TGCATGAAGAAAGAAAACGA+CGG	+	chr7.2:78030777-78030796	None:intergenic	35.0%
	TTCTTCATGCATGATATCCT+TGG	-	chr7.2:78030786-78030805	MS.gene43162:CDS	35.0%
!	AGTGATTGATGACCAGTTAA+CGG	-	chr7.2:78031127-78031146	MS.gene43162:CDS	35.0%
!	TAAGTCTGTTTGGGATTCAT+AGG	-	chr7.2:78031291-78031310	MS.gene43162:CDS	35.0%
!!!	ACTGTTTTTGAATACAGTCG+AGG	+	chr7.2:78031003-78031022	None:intergenic	35.0%
!!!	GCTTCATTTTCTGAGACTAA+AGG	+	chr7.2:78030588-78030607	None:intergenic	35.0%
!!!	GTGATTACTGTTTTTGTGCA+CGG	-	chr7.2:78031236-78031255	MS.gene43162:CDS	35.0%
!!!	TGATTACTGTTTTTGTGCAC+GGG	-	chr7.2:78031237-78031256	MS.gene43162:CDS	35.0%
	AACAATCTCCCAAACCTTGT+AGG	-	chr7.2:78030960-78030979	MS.gene43162:CDS	40.0%
	AACAATCTCTTCCCCATTAC+TGG	-	chr7.2:78030891-78030910	MS.gene43162:CDS	40.0%
	ACAGTCCAGAAGCTTATGTT+TGG	-	chr7.2:78031095-78031114	MS.gene43162:CDS	40.0%
	ATCACTGCTATCTCAGATTC+TGG	+	chr7.2:78031326-78031345	None:intergenic	40.0%
	ATGGAATTCCTCCAGTAATG+GGG	+	chr7.2:78030905-78030924	None:intergenic	40.0%
	CAGAACCAAACATAAGCTTC+TGG	+	chr7.2:78031103-78031122	None:intergenic	40.0%
	GATGACACCATAAGTCTGTT+TGG	-	chr7.2:78031281-78031300	MS.gene43162:CDS	40.0%
	GTAGCAAACAGTGATGTAAC+CGG	-	chr7.2:78030846-78030865	MS.gene43162:CDS	40.0%
	GTCGAGAGTCAAATTCATCT+AGG	+	chr7.2:78030401-78030420	None:intergenic	40.0%
	TACCTTCAGTAGGTTCTCTA+TGG	+	chr7.2:78031390-78031409	None:intergenic	40.0%
	TGACAATGCCGTTGAGTTTA+GGG	+	chr7.2:78030935-78030954	None:intergenic	40.0%
	TTCATGCATGATATCCTTGG+TGG	-	chr7.2:78030789-78030808	MS.gene43162:CDS	40.0%
	TTCTTCTGGTGTTTCATCTG+TGG	+	chr7.2:78030646-78030665	None:intergenic	40.0%
!	AGAAAATGAAGCACCAGTTG+TGG	-	chr7.2:78030596-78030615	MS.gene43162:CDS	40.0%
!	AGTGTAGTTTTCCATGTGTC+AGG	+	chr7.2:78030327-78030346	None:intergenic	40.0%
!	ATCTAGGATTCTTGCAGAGT+TGG	+	chr7.2:78030385-78030404	None:intergenic	40.0%
!	GAATCTGAGATAGCAGTGAT+TGG	-	chr7.2:78031326-78031345	MS.gene43162:CDS	40.0%
!	GTTTTACTTGGCAAGCTCAT+TGG	-	chr7.2:78031193-78031212	MS.gene43162:CDS	40.0%
!!	AACAGACTTATGGTGTCATC+AGG	+	chr7.2:78031281-78031300	None:intergenic	40.0%
!!	AAGAGCACAAGGGTTTTACT+TGG	-	chr7.2:78031181-78031200	MS.gene43162:CDS	40.0%
!!	ACAAGTAACACTGTTTCTGG+CGG	-	chr7.2:78031026-78031045	MS.gene43162:CDS	40.0%
!!	CGACAACCAACCTTTTGTTT+CGG	-	chr7.2:78031049-78031068	MS.gene43162:CDS	40.0%
!!	GCTATAGGTTTTGCTGTAAC+CGG	+	chr7.2:78030747-78030766	None:intergenic	40.0%
!!!	GATTACTGTTTTTGTGCACG+GGG	-	chr7.2:78031238-78031257	MS.gene43162:CDS	40.0%
!!!	TTTTCTGAGACTAAAGGGTC+TGG	+	chr7.2:78030582-78030601	None:intergenic	40.0%
	AAGCTTGGAGAATGGTAAGC+CGG	+	chr7.2:78030868-78030887	None:intergenic	45.0%
	AATCTCTTCCCCATTACTGG+AGG	-	chr7.2:78030894-78030913	MS.gene43162:CDS	45.0%
	AGATTACCCGCCGAAACAAA+AGG	+	chr7.2:78031062-78031081	None:intergenic	45.0%
	ATCACATCCATCAGCAAGAG+TGG	-	chr7.2:78030812-78030831	MS.gene43162:CDS	45.0%
	CAAGCTATAGGCAATCTACC+AGG	-	chr7.2:78030423-78030442	MS.gene43162:CDS	45.0%
	CACTGAGACCTACAAGGTTT+GGG	+	chr7.2:78030971-78030990	None:intergenic	45.0%
	CTGAGATAGCAGTGATTGGT+GGG	-	chr7.2:78031330-78031349	MS.gene43162:CDS	45.0%
	GAGCTGGATTCTTCTGTGAT+AGG	-	chr7.2:78031158-78031177	MS.gene43162:CDS	45.0%
	GCGGTAATAGGACTTATCTG+TGG	+	chr7.2:78030483-78030502	None:intergenic	45.0%
	GCTCATGTTCTTCCGTTAAC+TGG	+	chr7.2:78031142-78031161	None:intergenic	45.0%
	GGCACAAGTAACACTGTTTC+TGG	-	chr7.2:78031023-78031042	MS.gene43162:CDS	45.0%
	GGTAGATTGCCTATAGCTTG+TGG	+	chr7.2:78030423-78030442	None:intergenic	45.0%
	GTGACAATGCCGTTGAGTTT+AGG	+	chr7.2:78030936-78030955	None:intergenic	45.0%
	GTTAACGGAAGAACATGAGC+TGG	-	chr7.2:78031142-78031161	MS.gene43162:CDS	45.0%
	TACTTGGCAAGCTCATTGGA+TGG	-	chr7.2:78031197-78031216	MS.gene43162:CDS	45.0%
	TAGACCAACACACCACAGAT+GGG	-	chr7.2:78031408-78031427	MS.gene43162:CDS	45.0%
	TCTGGTGTTTCATCTGTGGT+AGG	+	chr7.2:78030642-78030661	None:intergenic	45.0%
	TCTGGTTGTGGAAGTTCTTC+TGG	+	chr7.2:78030660-78030679	None:intergenic	45.0%
	TGAGACTAAAGGGTCTGGAT+TGG	+	chr7.2:78030577-78030596	None:intergenic	45.0%
	TGCCATAGAGAACCTACTGA+AGG	-	chr7.2:78031385-78031404	MS.gene43162:CDS	45.0%
	TTGGTATCTCCACCAGAAAC+CGG	+	chr7.2:78030558-78030577	None:intergenic	45.0%
!	CTGTGATAGGAAGAGCACAA+GGG	-	chr7.2:78031171-78031190	MS.gene43162:CDS	45.0%
!	GGGAAGTATGAGAATGCTAG+AGG	-	chr7.2:78031356-78031375	MS.gene43162:CDS	45.0%
!	TCTGAGATAGCAGTGATTGG+TGG	-	chr7.2:78031329-78031348	MS.gene43162:CDS	45.0%
!	TCTGTGATAGGAAGAGCACA+AGG	-	chr7.2:78031170-78031189	MS.gene43162:CDS	45.0%
!	TGTGTTGGTCTACCTTCAGT+AGG	+	chr7.2:78031400-78031419	None:intergenic	45.0%
!!	AACCAACCTTTTGTTTCGGC+GGG	-	chr7.2:78031053-78031072	MS.gene43162:CDS	45.0%
!!	AATACTGCAACACCGGTTTC+TGG	-	chr7.2:78030543-78030562	MS.gene43162:CDS	45.0%
!!	AGAAACCGGTGTTGCAGTAT+TGG	+	chr7.2:78030544-78030563	None:intergenic	45.0%
!!	CAACCAACCTTTTGTTTCGG+CGG	-	chr7.2:78031052-78031071	MS.gene43162:CDS	45.0%
	AACGACGGCTCTTTCGCTAT+AGG	+	chr7.2:78030762-78030781	None:intergenic	50.0%
	AGACCAACACACCACAGATG+GGG	-	chr7.2:78031409-78031428	MS.gene43162:CDS	50.0%
	ATAGCAGTGATTGGTGGGAC+TGG	-	chr7.2:78031335-78031354	MS.gene43162:CDS	50.0%
	ATAGGCAATCTACCAGGACC+TGG	-	chr7.2:78030429-78030448	MS.gene43162:CDS	50.0%
	CACCACCAATACTGCAACAC+CGG	-	chr7.2:78030536-78030555	MS.gene43162:CDS	50.0%
	GACTCTCGACCACAAGCTAT+AGG	-	chr7.2:78030411-78030430	MS.gene43162:CDS	50.0%
	GCACTGAGACCTACAAGGTT+TGG	+	chr7.2:78030972-78030991	None:intergenic	50.0%
	GTAGACCAACACACCACAGA+TGG	-	chr7.2:78031407-78031426	MS.gene43162:CDS	50.0%
	TACCCGCCGAAACAAAAGGT+TGG	+	chr7.2:78031058-78031077	None:intergenic	50.0%
	TAGCAGTGATTGGTGGGACT+GGG	-	chr7.2:78031336-78031355	MS.gene43162:CDS	50.0%
	TATAGTTGTGGCCGAGGGAA+TGG	+	chr7.2:78030460-78030479	None:intergenic	50.0%
	TCTGTGGTAGGACTCACAAC+TGG	+	chr7.2:78030630-78030649	None:intergenic	50.0%
	TGGTAGGACTCACAACTGGA+GGG	+	chr7.2:78030626-78030645	None:intergenic	50.0%
	TGTGGTATAGTTGTGGCCGA+GGG	+	chr7.2:78030465-78030484	None:intergenic	50.0%
	TGTTATCGCACTTGGCGAAG+CGG	+	chr7.2:78030502-78030521	None:intergenic	50.0%
	TTCTGGACTGTAAACCCACC+AGG	+	chr7.2:78031086-78031105	None:intergenic	50.0%
!	CTGATGGATGTGATCCACCA+AGG	+	chr7.2:78030806-78030825	None:intergenic	50.0%
!!	AACCGGTGTTGCAGTATTGG+TGG	+	chr7.2:78030541-78030560	None:intergenic	50.0%
!!	TGTTGCAGTATTGGTGGTGG+TGG	+	chr7.2:78030535-78030554	None:intergenic	50.0%
	ACTGGAGGGATGTCCACAAC+TGG	+	chr7.2:78030612-78030631	None:intergenic	55.0%
	CCATCAGCAAGAGTGGTAGC+AGG	-	chr7.2:78030819-78030838	MS.gene43162:CDS	55.0%
	CCTGCTACCACTCTTGCTGA+TGG	+	chr7.2:78030822-78030841	None:intergenic	55.0%
	CTGTGGTATAGTTGTGGCCG+AGG	+	chr7.2:78030466-78030485	None:intergenic	55.0%
	GCACTTGGCGAAGCGGTAAT+AGG	+	chr7.2:78030495-78030514	None:intergenic	55.0%
	GCGTTGCATTAGGAACAGCC+GGG	+	chr7.2:78030725-78030744	None:intergenic	55.0%
	GCTGTAACCGGCGTTGCATT+AGG	+	chr7.2:78030735-78030754	None:intergenic	55.0%
	GGAAGTGGCACTTCAGCTTC+TGG	+	chr7.2:78030678-78030697	None:intergenic	55.0%
	GGCGTTGCATTAGGAACAGC+CGG	+	chr7.2:78030726-78030745	None:intergenic	55.0%
	GGCTGTTCCTAATGCAACGC+CGG	-	chr7.2:78030725-78030744	MS.gene43162:CDS	55.0%
	GTGGTAGGACTCACAACTGG+AGG	+	chr7.2:78030627-78030646	None:intergenic	55.0%
	GTTTCGGCGGGTAATCTTCC+TGG	-	chr7.2:78031065-78031084	MS.gene43162:CDS	55.0%
!	GAGCAGCACTGAGACCTACA+AGG	+	chr7.2:78030977-78030996	None:intergenic	55.0%
!	GCTGCAGGTGTTATCGCACT+TGG	+	chr7.2:78030510-78030529	None:intergenic	55.0%
!	GGCACTTCAGCTTCTGGTTG+TGG	+	chr7.2:78030672-78030691	None:intergenic	55.0%
!!	ACTGCAACACCGGTTTCTGG+TGG	-	chr7.2:78030546-78030565	MS.gene43162:CDS	55.0%
!!	CGGTGTTGCAGTATTGGTGG+TGG	+	chr7.2:78030538-78030557	None:intergenic	55.0%
!!	TGCAGTATTGGTGGTGGTGG+TGG	+	chr7.2:78030532-78030551	None:intergenic	55.0%
	ACCTGGAGCTGCCATTCCCT+CGG	-	chr7.2:78030446-78030465	MS.gene43162:CDS	60.0%
	ACTTCCACCGCCAGAAGCTG+AGG	-	chr7.2:78030692-78030711	MS.gene43162:CDS	60.0%
	AGTGGCACCTCAGCTTCTGG+CGG	+	chr7.2:78030702-78030721	None:intergenic	60.0%
	CACGGGGCTGAGCATCATGA+TGG	-	chr7.2:78031254-78031273	MS.gene43162:CDS	60.0%
	CAGCCCCATCTGTGGTGTGT+TGG	+	chr7.2:78031415-78031434	None:intergenic	60.0%
	CGGCGGGTAATCTTCCTGGT+GGG	-	chr7.2:78031069-78031088	MS.gene43162:CDS	60.0%
	GCATTAGGAACAGCCGGGAG+TGG	+	chr7.2:78030720-78030739	None:intergenic	60.0%
	TCAGCTTCTGGCGGTGGAAG+TGG	+	chr7.2:78030693-78030712	None:intergenic	60.0%
	TCGGCGGGTAATCTTCCTGG+TGG	-	chr7.2:78031068-78031087	MS.gene43162:CDS	60.0%
!	GATGGTGTCAGCCCCATCTG+TGG	+	chr7.2:78031423-78031442	None:intergenic	60.0%
!!	AGAAGCTGAGGTGCCACTCC+CGG	-	chr7.2:78030704-78030723	MS.gene43162:CDS	60.0%
	GGAATGGCAGCTCCAGGTCC+TGG	+	chr7.2:78030444-78030463	None:intergenic	65.0%
	GGGAGTGGCACCTCAGCTTC+TGG	+	chr7.2:78030705-78030724	None:intergenic	65.0%
!!	TTGGTGGTGGTGGTGGCTGC+AGG	+	chr7.2:78030525-78030544	None:intergenic	65.0%
	GCCGAGGGAATGGCAGCTCC+AGG	+	chr7.2:78030450-78030469	None:intergenic	70.0%
	GGCACCTCAGCTTCTGGCGG+TGG	+	chr7.2:78030699-78030718	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	78030300	78031472	78030300	ID=MS.gene43162
chr7.2	mRNA	78030300	78031472	78030300	ID=MS.gene43162.t1;Parent=MS.gene43162
chr7.2	exon	78030300	78031472	78030300	ID=MS.gene43162.t1.exon1;Parent=MS.gene43162.t1
chr7.2	CDS	78030300	78031472	78030300	ID=cds.MS.gene43162.t1;Parent=MS.gene43162.t1

Gene Sequence

>MS.gene43162

ATGGCCAGTGTTTTCATACAAAATCCTGACACATGGAAAACTACACTTTGCCTTTTCCTCCTAATCACAACTTTTTTGATTGCCAACTCTGCAAGAATCCTAGATGAATTTGACTCTCGACCACAAGCTATAGGCAATCTACCAGGACCTGGAGCTGCCATTCCCTCGGCCACAACTATACCACAGATAAGTCCTATTACCGCTTCGCCAAGTGCGATAACACCTGCAGCCACCACCACCACCAATACTGCAACACCGGTTTCTGGTGGAGATACCAATCCAGACCCTTTAGTCTCAGAAAATGAAGCACCAGTTGTGGACATCCCTCCAGTTGTGAGTCCTACCACAGATGAAACACCAGAAGAACTTCCACAACCAGAAGCTGAAGTGCCACTTCCACCGCCAGAAGCTGAGGTGCCACTCCCGGCTGTTCCTAATGCAACGCCGGTTACAGCAAAACCTATAGCGAAAGAGCCGTCGTTTTCTTTCTTCATGCATGATATCCTTGGTGGATCACATCCATCAGCAAGAGTGGTAGCAGGAATTGTAGCAAACAGTGATGTAACCGGCTTACCATTCTCCAAGCTTAATAACAATCTCTTCCCCATTACTGGAGGAATTCCATTAGTTAACCCTAAACTCAACGGCATTGTCACAAACAACAATCTCCCAAACCTTGTAGGTCTCAGTGCTGCTCAATCCTCGACTGTATTCAAAAACAGTGGCACAAGTAACACTGTTTCTGGCGGCGACAACCAACCTTTTGTTTCGGCGGGTAATCTTCCTGGTGGGTTTACAGTCCAGAAGCTTATGTTTGGTTCTGTGACAGTGATTGATGACCAGTTAACGGAAGAACATGAGCTGGATTCTTCTGTGATAGGAAGAGCACAAGGGTTTTACTTGGCAAGCTCATTGGATGGTACTAGTAAGACCATTGTGATTACTGTTTTTGTGCACGGGGCTGAGCATCATGATGGACCTGATGACACCATAAGTCTGTTTGGGATTCATAGGACAGCGTCGCCAGAATCTGAGATAGCAGTGATTGGTGGGACTGGGAAGTATGAGAATGCTAGAGGATATGCTGCCATAGAGAACCTACTGAAGGTAGACCAACACACCACAGATGGGGCTGACACCATCTTGCATTTCAGTATCTACCTCACTGAGTAG

Protein sequence

>MS.gene43162.t1

MASVFIQNPDTWKTTLCLFLLITTFLIANSARILDEFDSRPQAIGNLPGPGAAIPSATTIPQISPITASPSAITPAATTTTNTATPVSGGDTNPDPLVSENEAPVVDIPPVVSPTTDETPEELPQPEAEVPLPPPEAEVPLPAVPNATPVTAKPIAKEPSFSFFMHDILGGSHPSARVVAGIVANSDVTGLPFSKLNNNLFPITGGIPLVNPKLNGIVTNNNLPNLVGLSAAQSSTVFKNSGTSNTVSGGDNQPFVSAGNLPGGFTVQKLMFGSVTVIDDQLTEEHELDSSVIGRAQGFYLASSLDGTSKTIVITVFVHGAEHHDGPDDTISLFGIHRTASPESEIAVIGGTGKYENARGYAAIENLLKVDQHTTDGADTILHFSIYLTE