Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44077.t1 | XP_003591083.1 | 88.3 | 581 | 54 | 5 | 1 | 571 | 1 | 577 | 2.30E-77 | 300.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44077.t1 | Q9M8K5 | 62.5 | 104 | 36 | 1 | 1 | 104 | 1 | 101 | 5.7e-29 | 130.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44077.t1 | G7I813 | 88.3 | 581 | 54 | 5 | 1 | 571 | 1 | 577 | 1.6e-77 | 300.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049350 | MS.gene44077 | 0.803191 | 3.92E-49 | -1.69E-46 |
| MS.gene049666 | MS.gene44077 | 0.800012 | 1.76E-48 | -1.69E-46 |
| MS.gene049824 | MS.gene44077 | 0.822397 | 2.42E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene44077 | 0.872335 | 3.44E-67 | -1.69E-46 |
| MS.gene049873 | MS.gene44077 | 0.860763 | 1.65E-63 | -1.69E-46 |
| MS.gene051700 | MS.gene44077 | 0.841458 | 4.69E-58 | -1.69E-46 |
| MS.gene05188 | MS.gene44077 | 0.801346 | 9.40E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene44077 | 0.818935 | 1.51E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene44077 | 0.810542 | 1.09E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene44077 | 0.831079 | 2.05E-55 | -1.69E-46 |
| MS.gene053122 | MS.gene44077 | 0.804045 | 2.61E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene44077 | 0.838861 | 2.24E-57 | -1.69E-46 |
| MS.gene053294 | MS.gene44077 | 0.851425 | 8.95E-61 | -1.69E-46 |
| MS.gene053401 | MS.gene44077 | 0.838625 | 2.57E-57 | -1.69E-46 |
| MS.gene05365 | MS.gene44077 | 0.803053 | 4.19E-49 | -1.69E-46 |
| MS.gene055374 | MS.gene44077 | 0.821011 | 5.06E-53 | -1.69E-46 |
| MS.gene05548 | MS.gene44077 | 0.825748 | 3.96E-54 | -1.69E-46 |
| MS.gene055555 | MS.gene44077 | 0.96791 | 6.21E-128 | -1.69E-46 |
| MS.gene055808 | MS.gene44077 | 0.838842 | 2.26E-57 | -1.69E-46 |
| MS.gene056091 | MS.gene44077 | 0.846481 | 2.11E-59 | -1.69E-46 |
| MS.gene056215 | MS.gene44077 | 0.80393 | 2.76E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene44077 | 0.800783 | 1.23E-48 | -1.69E-46 |
| MS.gene056631 | MS.gene44077 | 0.808971 | 2.38E-50 | -1.69E-46 |
| MS.gene05689 | MS.gene44077 | 0.81743 | 3.31E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene44077 | 0.805059 | 1.60E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene44077 | 0.855969 | 4.42E-62 | -1.69E-46 |
| MS.gene057705 | MS.gene44077 | 0.856995 | 2.21E-62 | -1.69E-46 |
| MS.gene058498 | MS.gene44077 | 0.841213 | 5.45E-58 | -1.69E-46 |
| MS.gene058500 | MS.gene44077 | 0.813094 | 3.05E-51 | -1.69E-46 |
| MS.gene059227 | MS.gene44077 | 0.814709 | 1.34E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene44077 | 0.838142 | 3.43E-57 | -1.69E-46 |
| MS.gene05985 | MS.gene44077 | -0.818958 | 1.49E-52 | -1.69E-46 |
| MS.gene059935 | MS.gene44077 | 0.859101 | 5.22E-63 | -1.69E-46 |
| MS.gene06001 | MS.gene44077 | 0.814855 | 1.25E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene44077 | 0.813857 | 2.07E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene44077 | 0.841341 | 5.04E-58 | -1.69E-46 |
| MS.gene060429 | MS.gene44077 | 0.848375 | 6.38E-60 | -1.69E-46 |
| MS.gene060586 | MS.gene44077 | 0.816134 | 6.47E-52 | -1.69E-46 |
| MS.gene060763 | MS.gene44077 | 0.825944 | 3.56E-54 | -1.69E-46 |
| MS.gene060830 | MS.gene44077 | 0.82128 | 4.39E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44077.t1 | MTR_1g082650 | 94.692 | 584 | 11 | 9 | 1 | 571 | 1 | 577 | 0.0 | 1034 |
| MS.gene44077.t1 | MTR_2g022250 | 68.354 | 79 | 25 | 0 | 1 | 79 | 1 | 79 | 2.09e-29 | 122 |
| MS.gene44077.t1 | MTR_1g107565 | 66.667 | 78 | 23 | 1 | 1 | 75 | 1 | 78 | 4.93e-28 | 116 |
| MS.gene44077.t1 | MTR_4g117220 | 64.103 | 78 | 28 | 0 | 1 | 78 | 1 | 78 | 1.16e-26 | 114 |
| MS.gene44077.t1 | MTR_4g117140 | 64.103 | 78 | 28 | 0 | 1 | 78 | 1 | 78 | 1.28e-26 | 114 |
| MS.gene44077.t1 | MTR_2g022240 | 63.158 | 76 | 28 | 0 | 1 | 76 | 1 | 76 | 3.78e-24 | 106 |
| MS.gene44077.t1 | MTR_7g108560 | 57.143 | 70 | 30 | 0 | 5 | 74 | 17 | 86 | 1.72e-19 | 89.7 |
| MS.gene44077.t1 | MTR_3g067750 | 52.113 | 71 | 34 | 0 | 3 | 73 | 5 | 75 | 1.47e-18 | 85.1 |
| MS.gene44077.t1 | MTR_4g119820 | 55.224 | 67 | 30 | 0 | 7 | 73 | 71 | 137 | 5.50e-18 | 86.3 |
| MS.gene44077.t1 | MTR_7g113110 | 54.545 | 66 | 30 | 0 | 9 | 74 | 32 | 97 | 4.05e-17 | 83.6 |
| MS.gene44077.t1 | MTR_1g083310 | 52.174 | 69 | 32 | 1 | 7 | 74 | 12 | 80 | 1.68e-16 | 82.0 |
| MS.gene44077.t1 | MTR_8g091420 | 60.656 | 61 | 24 | 0 | 14 | 74 | 33 | 93 | 5.60e-15 | 72.8 |
| MS.gene44077.t1 | MTR_2g436830 | 54.412 | 68 | 31 | 0 | 7 | 74 | 12 | 79 | 1.86e-14 | 74.7 |
| MS.gene44077.t1 | MTR_3g087770 | 54.545 | 66 | 30 | 0 | 9 | 74 | 29 | 94 | 5.81e-14 | 70.1 |
| MS.gene44077.t1 | MTR_6g026890 | 42.254 | 71 | 37 | 1 | 8 | 74 | 10 | 80 | 2.89e-13 | 67.8 |
| MS.gene44077.t1 | MTR_7g113750 | 43.373 | 83 | 41 | 3 | 1 | 81 | 6 | 84 | 9.72e-13 | 70.5 |
| MS.gene44077.t1 | MTR_2g018790 | 39.474 | 76 | 45 | 1 | 4 | 78 | 2 | 77 | 1.23e-12 | 69.3 |
| MS.gene44077.t1 | MTR_6g003990 | 41.791 | 67 | 38 | 1 | 9 | 74 | 29 | 95 | 1.56e-12 | 65.9 |
| MS.gene44077.t1 | MTR_5g025150 | 40.278 | 72 | 43 | 0 | 3 | 74 | 16 | 87 | 8.78e-12 | 63.5 |
| MS.gene44077.t1 | MTR_4g073040 | 41.096 | 73 | 42 | 1 | 3 | 74 | 21 | 93 | 1.13e-11 | 63.5 |
| MS.gene44077.t1 | MTR_1g078090 | 43.243 | 74 | 42 | 0 | 1 | 74 | 44 | 117 | 1.46e-11 | 63.9 |
| MS.gene44077.t1 | MTR_5g022620 | 42.647 | 68 | 38 | 1 | 8 | 74 | 27 | 94 | 2.08e-11 | 62.8 |
| MS.gene44077.t1 | MTR_7g083060 | 40.541 | 74 | 43 | 1 | 2 | 74 | 16 | 89 | 4.08e-11 | 61.6 |
| MS.gene44077.t1 | MTR_1g030630 | 39.394 | 66 | 40 | 0 | 9 | 74 | 24 | 89 | 4.38e-11 | 61.6 |
| MS.gene44077.t1 | MTR_3g073670 | 37.349 | 83 | 49 | 1 | 14 | 93 | 30 | 112 | 5.04e-11 | 61.6 |
| MS.gene44077.t1 | MTR_2g091235 | 41.026 | 78 | 45 | 1 | 14 | 91 | 6 | 82 | 5.82e-11 | 61.2 |
| MS.gene44077.t1 | MTR_1g092670 | 42.647 | 68 | 39 | 0 | 7 | 74 | 1 | 68 | 6.69e-11 | 58.9 |
| MS.gene44077.t1 | MTR_3g435930 | 47.761 | 67 | 34 | 1 | 9 | 74 | 115 | 181 | 8.23e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44077.t1 | AT5G19090 | 63.366 | 101 | 36 | 1 | 1 | 101 | 1 | 100 | 1.58e-32 | 130 |
| MS.gene44077.t1 | AT5G19090 | 63.366 | 101 | 36 | 1 | 1 | 101 | 1 | 100 | 1.58e-32 | 130 |
| MS.gene44077.t1 | AT5G19090 | 63.366 | 101 | 36 | 1 | 1 | 101 | 1 | 100 | 5.79e-32 | 130 |
| MS.gene44077.t1 | AT5G19090 | 63.366 | 101 | 36 | 1 | 1 | 101 | 1 | 100 | 5.79e-32 | 130 |
| MS.gene44077.t1 | AT5G19090 | 63.366 | 101 | 36 | 1 | 1 | 101 | 1 | 100 | 5.79e-32 | 130 |
| MS.gene44077.t1 | AT3G05220 | 57.143 | 112 | 43 | 1 | 1 | 112 | 1 | 107 | 1.88e-29 | 123 |
| MS.gene44077.t1 | AT1G23000 | 47.656 | 128 | 54 | 4 | 6 | 132 | 9 | 124 | 6.38e-24 | 103 |
| MS.gene44077.t1 | AT1G23000 | 47.656 | 128 | 54 | 4 | 6 | 132 | 69 | 184 | 2.43e-23 | 103 |
| MS.gene44077.t1 | AT5G27690 | 47.059 | 85 | 45 | 0 | 7 | 91 | 27 | 111 | 2.96e-22 | 99.0 |
| MS.gene44077.t1 | AT5G37860 | 58.462 | 65 | 27 | 0 | 9 | 73 | 9 | 73 | 5.68e-19 | 87.4 |
| MS.gene44077.t1 | AT1G56210 | 58.730 | 63 | 26 | 0 | 10 | 72 | 40 | 102 | 2.27e-17 | 84.3 |
| MS.gene44077.t1 | AT1G06330 | 50.820 | 61 | 30 | 0 | 14 | 74 | 6 | 66 | 1.27e-13 | 68.9 |
| MS.gene44077.t1 | AT4G08570 | 47.059 | 68 | 35 | 1 | 8 | 74 | 24 | 91 | 5.39e-13 | 67.4 |
| MS.gene44077.t1 | AT1G22990 | 41.975 | 81 | 44 | 2 | 3 | 82 | 24 | 102 | 6.28e-12 | 64.3 |
| MS.gene44077.t1 | AT2G37390 | 47.692 | 65 | 33 | 1 | 10 | 74 | 180 | 243 | 7.41e-12 | 66.2 |
| MS.gene44077.t1 | AT2G37390 | 47.692 | 65 | 33 | 1 | 10 | 74 | 181 | 244 | 7.44e-12 | 66.2 |
| MS.gene44077.t1 | AT3G02960 | 41.892 | 74 | 42 | 1 | 3 | 75 | 119 | 192 | 1.50e-11 | 65.1 |
| MS.gene44077.t1 | AT5G02600 | 49.231 | 65 | 32 | 1 | 10 | 74 | 250 | 313 | 2.07e-11 | 65.9 |
| MS.gene44077.t1 | AT5G02600 | 49.231 | 65 | 32 | 1 | 10 | 74 | 250 | 313 | 2.07e-11 | 65.9 |
| MS.gene44077.t1 | AT1G22990 | 42.254 | 71 | 40 | 1 | 13 | 82 | 27 | 97 | 2.60e-11 | 62.4 |
| MS.gene44077.t1 | AT4G23882 | 46.970 | 66 | 34 | 1 | 9 | 73 | 77 | 142 | 3.33e-11 | 64.7 |
| MS.gene44077.t1 | AT1G71050 | 40.909 | 66 | 39 | 0 | 9 | 74 | 27 | 92 | 3.35e-11 | 62.0 |
| MS.gene44077.t1 | AT3G56891 | 45.902 | 61 | 33 | 0 | 14 | 74 | 20 | 80 | 4.55e-11 | 62.0 |
| MS.gene44077.t1 | AT5G17450 | 42.424 | 66 | 38 | 0 | 9 | 74 | 25 | 90 | 6.40e-11 | 61.2 |
Find 163 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTACCATGTCCATTAT+TGG | 0.170658 | 1.3:-58213135 | None:intergenic |
| GGGCCTCCAGGCAATGGATT+TGG | 0.269551 | 1.3:+58212483 | MS.gene44077:CDS |
| ACATCCATCAATGAACTATA+TGG | 0.284194 | 1.3:+58213529 | MS.gene44077:CDS |
| GCCAAGGGCAATGCCAATAA+TGG | 0.314955 | 1.3:+58213122 | MS.gene44077:CDS |
| GATGGAGGTAAGAAGAATAA+AGG | 0.317363 | 1.3:+58212774 | MS.gene44077:CDS |
| TGCTGTTGCTGTTGCTGATA+AGG | 0.318669 | 1.3:-58213362 | None:intergenic |
| CTAGTTAAGTTTCTAGGGCT+TGG | 0.332945 | 1.3:+58212891 | MS.gene44077:CDS |
| CAGGGAAACATGCTGAACTA+TGG | 0.336084 | 1.3:+58212124 | MS.gene44077:CDS |
| CTGCCGGCATGCTCCTCATT+TGG | 0.337899 | 1.3:-58213262 | None:intergenic |
| TGCTGTTGCTGATAAGGATT+TGG | 0.339759 | 1.3:-58213356 | None:intergenic |
| GCCGGCAGTGCAAGGGTTAC+CGG | 0.341648 | 1.3:+58213277 | MS.gene44077:CDS |
| AATGGACATGGTAATAATAA+TGG | 0.358191 | 1.3:+58213140 | MS.gene44077:CDS |
| ACAAGATATGATGAAAATTC+AGG | 0.364742 | 1.3:+58211458 | MS.gene44077:CDS |
| GGCCTCCAGGCAATGGATTT+GGG | 0.369230 | 1.3:+58212484 | MS.gene44077:CDS |
| GGGGAAAAGCAAAAGGGTGG+TGG | 0.371759 | 1.3:+58212795 | MS.gene44077:CDS |
| CAGAATCAAAAGGGTCAAAA+AGG | 0.373373 | 1.3:+58212258 | MS.gene44077:CDS |
| GGGGCAGCTGCGGCGATGAA+TGG | 0.373441 | 1.3:+58213302 | MS.gene44077:CDS |
| ATGGTAATAATAATGGTAAT+GGG | 0.379392 | 1.3:+58213147 | MS.gene44077:CDS |
| ACCATTACCTGGGATGTTCA+TGG | 0.380238 | 1.3:-58212610 | None:intergenic |
| AACATGTTTCTGAGATTTGT+TGG | 0.389321 | 1.3:-58212337 | None:intergenic |
| CCTCCTCCTTTACCATTACC+TGG | 0.392465 | 1.3:-58212621 | None:intergenic |
| ATGGAGGTAAGAAGAATAAA+GGG | 0.400340 | 1.3:+58212775 | MS.gene44077:CDS |
| GAGGATGAAGAAGAGGAGTT+TGG | 0.403036 | 1.3:+58212432 | MS.gene44077:CDS |
| TCTGATTCATTGCACCCATC+TGG | 0.405299 | 1.3:-58213190 | None:intergenic |
| GAAAAGCAAAAGGGTGGTGG+GGG | 0.405813 | 1.3:+58212798 | MS.gene44077:CDS |
| AAAAGTGGTAAGGGTGGAAA+TGG | 0.412152 | 1.3:+58213074 | MS.gene44077:CDS |
| CAGTGCAAGGGTTACCGGCC+GGG | 0.416864 | 1.3:+58213282 | MS.gene44077:CDS |
| TCCATTATTGGCATTGCCCT+TGG | 0.417589 | 1.3:-58213123 | None:intergenic |
| GGAAAAGCAAAAGGGTGGTG+GGG | 0.418059 | 1.3:+58212797 | MS.gene44077:CDS |
| GCCGGTAACCCTTGCACTGC+CGG | 0.421629 | 1.3:-58213278 | None:intergenic |
| CATGGTAATAATAATGGTAA+TGG | 0.423098 | 1.3:+58213146 | MS.gene44077:CDS |
| GGTGGAAATGGAAATGGAAA+TGG | 0.432449 | 1.3:+58213086 | MS.gene44077:CDS |
| AATGGTCGTGGGCCACAGCT+AGG | 0.432834 | 1.3:+58212552 | MS.gene44077:CDS |
| AGTGCAAGGGTTACCGGCCG+GGG | 0.435816 | 1.3:+58213283 | MS.gene44077:CDS |
| GAATAAAGGGGAAAAGCAAA+AGG | 0.443691 | 1.3:+58212788 | MS.gene44077:CDS |
| GGTAATGGAGGTGGTAAGAA+AGG | 0.449463 | 1.3:+58212744 | MS.gene44077:CDS |
| TATCCACAACATATGATGTA+TGG | 0.452805 | 1.3:+58213494 | MS.gene44077:CDS |
| TGCAAATGGATAATAACAAA+GGG | 0.454184 | 1.3:+58212217 | MS.gene44077:CDS |
| TTATTGGCATTGCCCTTGGC+AGG | 0.454606 | 1.3:-58213119 | None:intergenic |
| AAACTGCTTCAGAAAATTGA+AGG | 0.457319 | 1.3:+58211662 | MS.gene44077:CDS |
| ACCTATGCAAATGCAGATGA+AGG | 0.459346 | 1.3:+58212689 | MS.gene44077:CDS |
| GTAATGGAGGTGGTAAGAAA+GGG | 0.460661 | 1.3:+58212745 | MS.gene44077:CDS |
| ACATGTTTCTGAGATTTGTT+GGG | 0.462682 | 1.3:-58212336 | None:intergenic |
| GGGAAAAGCAAAAGGGTGGT+GGG | 0.463087 | 1.3:+58212796 | MS.gene44077:CDS |
| TCTGGCCCATTGGACCCATA+TGG | 0.464410 | 1.3:-58213172 | None:intergenic |
| CAACAAGCCTCAGAATCAAA+AGG | 0.465567 | 1.3:+58212248 | MS.gene44077:CDS |
| GGTAAGGGTGGAAATGGAAA+TGG | 0.465972 | 1.3:+58213080 | MS.gene44077:CDS |
| TCACTGAAAACATGAGTGAT+TGG | 0.466485 | 1.3:-58213587 | None:intergenic |
| TGCTGCCCAAATCCATTGCC+TGG | 0.470924 | 1.3:-58212489 | None:intergenic |
| GTGGAAATGGAAATGGAAAT+GGG | 0.471325 | 1.3:+58213087 | MS.gene44077:CDS |
| CAAGGGAAGGTGTTGGTGAC+AGG | 0.475651 | 1.3:+58212060 | MS.gene44077:CDS |
| TCCTCATGGTAAAAGTGGTA+AGG | 0.478115 | 1.3:+58213064 | MS.gene44077:CDS |
| TCAGTTTAAGAACATGCAAA+TGG | 0.478310 | 1.3:+58212203 | MS.gene44077:CDS |
| AATGGTAAAGGAGGAGGTGG+TGG | 0.479249 | 1.3:+58212627 | MS.gene44077:CDS |
| CCACAGCTAGGGCCTGGTGA+TGG | 0.480756 | 1.3:+58212564 | MS.gene44077:CDS |
| AGGGAAACATGCTGAACTAT+GGG | 0.482972 | 1.3:+58212125 | MS.gene44077:CDS |
| AATGGGTCAGATGGGTTCAA+TGG | 0.483632 | 1.3:+58213238 | MS.gene44077:CDS |
| ATTGCACCCATCTGGCCCAT+TGG | 0.483802 | 1.3:-58213182 | None:intergenic |
| AAGGGTAAAAGTGGAAATTA+CGG | 0.485308 | 1.3:+58212708 | MS.gene44077:CDS |
| ATCACTCCTCATGGTAAAAG+TGG | 0.485671 | 1.3:+58213059 | MS.gene44077:CDS |
| ATTCATCGCCGCAGCTGCCC+CGG | 0.485684 | 1.3:-58213300 | None:intergenic |
| ATGAATAAGATGGGTCCAAT+GGG | 0.487266 | 1.3:+58213221 | MS.gene44077:CDS |
| GCAGTGCAAGGGTTACCGGC+CGG | 0.488422 | 1.3:+58213281 | MS.gene44077:CDS |
| GGCCATGGTCAAGGGCCTCC+AGG | 0.488629 | 1.3:+58212471 | MS.gene44077:CDS |
| CATGGTCATGGCCATGGTCA+AGG | 0.488816 | 1.3:+58212462 | MS.gene44077:CDS |
| GAGGAGTGATATCAAAGTCT+TGG | 0.489452 | 1.3:-58213046 | None:intergenic |
| CGTGGGCCACAGCTAGGGCC+TGG | 0.491267 | 1.3:+58212558 | MS.gene44077:CDS |
| ATCGCCGCAGCTGCCCCGGC+CGG | 0.491724 | 1.3:-58213296 | None:intergenic |
| GATGGGTCCAATGGGTCAGA+TGG | 0.493165 | 1.3:+58213229 | MS.gene44077:CDS |
| AGGAGCATGCCGGCAGTGCA+AGG | 0.498242 | 1.3:+58213269 | MS.gene44077:CDS |
| GTTACCGGCCGGGGCAGCTG+CGG | 0.501977 | 1.3:+58213292 | MS.gene44077:CDS |
| ACCAATGCCATCACACCCTA+TGG | 0.502702 | 1.3:+58213559 | MS.gene44077:CDS |
| GCCATGAACATCCCAGGTAA+TGG | 0.503054 | 1.3:+58212609 | MS.gene44077:CDS |
| CCTGGGATGTTCATGGCAGC+AGG | 0.506128 | 1.3:-58212603 | None:intergenic |
| TGCCTGGAGGCCCTTGACCA+TGG | 0.506822 | 1.3:-58212473 | None:intergenic |
| GGTGATGGTATGATGATGAA+TGG | 0.512661 | 1.3:+58212579 | MS.gene44077:CDS |
| GGTCAAGGGCCTCCAGGCAA+TGG | 0.514555 | 1.3:+58212477 | MS.gene44077:CDS |
| CATCCATCAATGAACTATAT+GGG | 0.516767 | 1.3:+58213530 | MS.gene44077:CDS |
| GCATAATAACAAAATGATGA+TGG | 0.517505 | 1.3:+58212518 | MS.gene44077:CDS |
| GATGGCAGCAATGAATAAGA+TGG | 0.517515 | 1.3:+58213211 | MS.gene44077:CDS |
| ATTGAACCCATCTGACCCAT+TGG | 0.518800 | 1.3:-58213236 | None:intergenic |
| TCTGTAGAATTGTCTTCTCA+AGG | 0.518947 | 1.3:+58211601 | MS.gene44077:intron |
| TATGGGTCCAATGGGCCAGA+TGG | 0.519343 | 1.3:+58213175 | MS.gene44077:CDS |
| ATTTGCATGTTCTTAAACTG+AGG | 0.523768 | 1.3:-58212201 | None:intergenic |
| ATGAATGGTGGCTATTATCA+AGG | 0.526298 | 1.3:+58213317 | MS.gene44077:CDS |
| ATGGTCGTGGGCCACAGCTA+GGG | 0.529327 | 1.3:+58212553 | MS.gene44077:CDS |
| ATGGGTCCAATGGGCCAGAT+GGG | 0.532006 | 1.3:+58213176 | MS.gene44077:CDS |
| ATATAGTTCATTGATGGATG+TGG | 0.537347 | 1.3:-58213527 | None:intergenic |
| TTGTGAAGGTTGTGAGCAGA+AGG | 0.537353 | 1.3:+58211634 | MS.gene44077:CDS |
| CTCCTCCTTTACCATTACCT+GGG | 0.537413 | 1.3:-58212620 | None:intergenic |
| AACATCCCAGGTAATGGTAA+AGG | 0.537780 | 1.3:+58212615 | MS.gene44077:CDS |
| ATAGCAACAACAACAGCAAA+GGG | 0.537937 | 1.3:+58212976 | MS.gene44077:CDS |
| GGGTGTGATGGCATTGGTGG+CGG | 0.538638 | 1.3:-58213554 | None:intergenic |
| GCTATGATGCAGAATGGTCG+TGG | 0.539141 | 1.3:+58212540 | MS.gene44077:CDS |
| CACGGACATGGTCATGGCCA+TGG | 0.540291 | 1.3:+58212456 | MS.gene44077:CDS |
| GGTCCCATATAGTTCATTGA+TGG | 0.543358 | 1.3:-58213533 | None:intergenic |
| ATGCAGATGAAGGGTAAAAG+TGG | 0.544101 | 1.3:+58212699 | MS.gene44077:CDS |
| ATAGGGTGTGATGGCATTGG+TGG | 0.545253 | 1.3:-58213557 | None:intergenic |
| GCCATAGGGTGTGATGGCAT+TGG | 0.546440 | 1.3:-58213560 | None:intergenic |
| GAGGAGTTTGGTCACGGACA+TGG | 0.551855 | 1.3:+58212444 | MS.gene44077:CDS |
| TGGGTTCAATGGACCAAATG+AGG | 0.553719 | 1.3:+58213249 | MS.gene44077:CDS |
| TAATGGAGGTGGTAAGAAAG+GGG | 0.555785 | 1.3:+58212746 | MS.gene44077:CDS |
| ATGGTCATGGCCATGGTCAA+GGG | 0.556259 | 1.3:+58212463 | MS.gene44077:CDS |
| CCCTTCATCTGCATTTGCAT+AGG | 0.556545 | 1.3:-58212690 | None:intergenic |
| AATGAATAAGATGGGTCCAA+TGG | 0.557145 | 1.3:+58213220 | MS.gene44077:CDS |
| CCAGGTAATGGTAAAGGAGG+AGG | 0.560490 | 1.3:+58212621 | MS.gene44077:CDS |
| TGGGAAAGGTGCTCCTGCCA+AGG | 0.561931 | 1.3:+58213106 | MS.gene44077:CDS |
| GCAGCTGCGGCGATGAATGG+TGG | 0.562369 | 1.3:+58213305 | MS.gene44077:CDS |
| GACTTTGATATCACTCCTCA+TGG | 0.564860 | 1.3:+58213050 | MS.gene44077:CDS |
| CCTCCATACATCATATGTTG+TGG | 0.564896 | 1.3:-58213497 | None:intergenic |
| ACAACAACAACAGCAATACA+TGG | 0.565187 | 1.3:+58213385 | MS.gene44077:CDS |
| GCACAGTTTCAAAATCCTAA+AGG | 0.569465 | 1.3:+58212294 | MS.gene44077:CDS |
| CCTCATGGTAAAAGTGGTAA+GGG | 0.569715 | 1.3:+58213065 | MS.gene44077:CDS |
| AACAAGCCTCAGAATCAAAA+GGG | 0.570080 | 1.3:+58212249 | MS.gene44077:CDS |
| TTTGGTCACGGACATGGTCA+TGG | 0.570828 | 1.3:+58212450 | MS.gene44077:CDS |
| GGTAATAATAATGGTAATGG+GGG | 0.572168 | 1.3:+58213149 | MS.gene44077:CDS |
| ATGCAAATGGATAATAACAA+AGG | 0.575532 | 1.3:+58212216 | MS.gene44077:CDS |
| AAGGTTAATATCCATTGTGA+AGG | 0.575780 | 1.3:+58211620 | MS.gene44077:CDS |
| TGGTAATAATAATGGTAATG+GGG | 0.579408 | 1.3:+58213148 | MS.gene44077:CDS |
| ATGGGTCCAATGGGTCAGAT+GGG | 0.580478 | 1.3:+58213230 | MS.gene44077:CDS |
| GTGAATATAGATGCAGAACA+AGG | 0.583193 | 1.3:+58212042 | MS.gene44077:CDS |
| GTGATGGTATGATGATGAAT+GGG | 0.583869 | 1.3:+58212580 | MS.gene44077:CDS |
| GCAAATGGATAATAACAAAG+GGG | 0.584331 | 1.3:+58212218 | MS.gene44077:CDS |
| TGAGTGATTGGATCTGCCAT+AGG | 0.585575 | 1.3:-58213575 | None:intergenic |
| CCTGCTGCCATGAACATCCC+AGG | 0.587642 | 1.3:+58212603 | MS.gene44077:CDS |
| GGTAATGGTAAAGGAGGAGG+TGG | 0.588777 | 1.3:+58212624 | MS.gene44077:CDS |
| AATAAAGGGGAAAAGCAAAA+GGG | 0.595467 | 1.3:+58212789 | MS.gene44077:CDS |
| ATGGCAGCAATGAATAAGAT+GGG | 0.598736 | 1.3:+58213212 | MS.gene44077:CDS |
| TATAGATGCAGAACAAGGGA+AGG | 0.601009 | 1.3:+58212047 | MS.gene44077:CDS |
| GGATCTGCCATAGGGTGTGA+TGG | 0.601407 | 1.3:-58213566 | None:intergenic |
| CAACATATGATGTATGGAGG+AGG | 0.605393 | 1.3:+58213500 | MS.gene44077:CDS |
| CCTATGCAAATGCAGATGAA+GGG | 0.607502 | 1.3:+58212690 | MS.gene44077:CDS |
| TTCATCATCATACCATCACC+AGG | 0.608129 | 1.3:-58212576 | None:intergenic |
| AATAGCAACAACAACAGCAA+AGG | 0.608297 | 1.3:+58212975 | MS.gene44077:CDS |
| AATGGAAATGGAAATGGGAA+AGG | 0.608664 | 1.3:+58213092 | MS.gene44077:CDS |
| ATCCCAGGTAATGGTAAAGG+AGG | 0.609225 | 1.3:+58212618 | MS.gene44077:CDS |
| GGGAAAGGTGCTCCTGCCAA+GGG | 0.613724 | 1.3:+58213107 | MS.gene44077:CDS |
| GGACCAAATGAGGAGCATGC+CGG | 0.615075 | 1.3:+58213259 | MS.gene44077:CDS |
| CATGGTAAAAGTGGTAAGGG+TGG | 0.615769 | 1.3:+58213068 | MS.gene44077:CDS |
| TGCAGAACAAGGGAAGGTGT+TGG | 0.615855 | 1.3:+58212053 | MS.gene44077:CDS |
| GGAGCATGCCGGCAGTGCAA+GGG | 0.616628 | 1.3:+58213270 | MS.gene44077:CDS |
| GAAGAAGAGGAGTTTGGTCA+CGG | 0.617819 | 1.3:+58212438 | MS.gene44077:CDS |
| GATGGGTGCAATGAATCAGA+TGG | 0.620881 | 1.3:+58213193 | MS.gene44077:CDS |
| GGCAATGCCAATAATGGACA+TGG | 0.622193 | 1.3:+58213128 | MS.gene44077:CDS |
| AATGGAGGTGGTAAGAAAGG+GGG | 0.629262 | 1.3:+58212747 | MS.gene44077:CDS |
| CCATCACCAGGCCCTAGCTG+TGG | 0.636272 | 1.3:-58212564 | None:intergenic |
| AAAGGGGAAAAGCAAAAGGG+TGG | 0.640635 | 1.3:+58212792 | MS.gene44077:CDS |
| CCACAACATATGATGTATGG+AGG | 0.641920 | 1.3:+58213497 | MS.gene44077:CDS |
| GAGTGATTGGATCTGCCATA+GGG | 0.655708 | 1.3:-58213574 | None:intergenic |
| ATATGATGTATGGAGGAGGA+AGG | 0.656963 | 1.3:+58213504 | MS.gene44077:CDS |
| AAACATGCTGAACTATGGGG+TGG | 0.661564 | 1.3:+58212129 | MS.gene44077:CDS |
| TGAATATAGATGCAGAACAA+GGG | 0.662709 | 1.3:+58212043 | MS.gene44077:CDS |
| TGGAGGTAAGAAGAATAAAG+GGG | 0.662757 | 1.3:+58212776 | MS.gene44077:CDS |
| CAAATGGATAATAACAAAGG+GGG | 0.663697 | 1.3:+58212219 | MS.gene44077:CDS |
| ATGATGGCTATGATGCAGAA+TGG | 0.663851 | 1.3:+58212534 | MS.gene44077:CDS |
| CAGTTTCAAAATCCTAAAGG+AGG | 0.665835 | 1.3:+58212297 | MS.gene44077:CDS |
| GAGGAATTTGATGAGAGTGA+TGG | 0.668256 | 1.3:+58212378 | MS.gene44077:CDS |
| CAGCAACAACAAATGCAGCA+AGG | 0.669858 | 1.3:+58213455 | MS.gene44077:CDS |
| TCTGCTCACAACCTTCACAA+TGG | 0.671031 | 1.3:-58211631 | None:intergenic |
| GGGAAACATGCTGAACTATG+GGG | 0.688345 | 1.3:+58212126 | MS.gene44077:CDS |
| TGCCCAAATCCATTGCCTGG+AGG | 0.700160 | 1.3:-58212486 | None:intergenic |
| CTATGATGCAGAATGGTCGT+GGG | 0.701836 | 1.3:+58212541 | MS.gene44077:CDS |
| TAAAAGTGGAAATTACGGTG+AGG | 0.728158 | 1.3:+58212713 | MS.gene44077:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAACTTTTTTATGTTTATA+TGG | + | chr1.3:58211905-58211924 | MS.gene44077:intron | 15.0% |
| !! | AAAAAACATGAAATTAAGGA+GGG | - | chr1.3:58211844-58211863 | None:intergenic | 20.0% |
| !! | AAAAATGGTAAAGGTAAAAA+CGG | + | chr1.3:58212855-58212874 | MS.gene44077:CDS | 20.0% |
| !! | AAACAAAAACTTTACTATGT+CGG | + | chr1.3:58211794-58211813 | MS.gene44077:intron | 20.0% |
| !! | ATAAATAAGTAAGAAGAACA+AGG | - | chr1.3:58211489-58211508 | None:intergenic | 20.0% |
| !! | ATGGTAATAATAATGGTAAT+GGG | + | chr1.3:58213147-58213166 | MS.gene44077:CDS | 20.0% |
| !!! | ATCATTTTGTTATTATGCAT+AGG | - | chr1.3:58212516-58212535 | None:intergenic | 20.0% |
| ! | AATAGTAGCAAGAAGAAAAA+TGG | + | chr1.3:58212840-58212859 | MS.gene44077:CDS | 25.0% |
| ! | AATCTGTACTTATGTTTAAC+TGG | + | chr1.3:58211558-58211577 | MS.gene44077:intron | 25.0% |
| ! | AATGGACATGGTAATAATAA+TGG | + | chr1.3:58213140-58213159 | MS.gene44077:CDS | 25.0% |
| ! | AATTATGCAAAAGCCAAAAA+AGG | + | chr1.3:58212651-58212670 | MS.gene44077:CDS | 25.0% |
| ! | ACAAGATATGATGAAAATTC+AGG | + | chr1.3:58211458-58211477 | MS.gene44077:CDS | 25.0% |
| ! | ACATGTTAACTTTACTATGT+CGG | + | chr1.3:58211753-58211772 | MS.gene44077:intron | 25.0% |
| ! | AGGGAAAAAACATGAAATTA+AGG | - | chr1.3:58211848-58211867 | None:intergenic | 25.0% |
| ! | ATGCAAATGGATAATAACAA+AGG | + | chr1.3:58212216-58212235 | MS.gene44077:CDS | 25.0% |
| ! | ATTATTACCATGTCCATTAT+TGG | - | chr1.3:58213138-58213157 | None:intergenic | 25.0% |
| ! | CATGGTAATAATAATGGTAA+TGG | + | chr1.3:58213146-58213165 | MS.gene44077:CDS | 25.0% |
| ! | GAAAAAACATGAAATTAAGG+AGG | - | chr1.3:58211845-58211864 | None:intergenic | 25.0% |
| ! | GCATAATAACAAAATGATGA+TGG | + | chr1.3:58212518-58212537 | MS.gene44077:CDS | 25.0% |
| ! | TCACAAAAACATCATAAAGT+TGG | - | chr1.3:58211888-58211907 | None:intergenic | 25.0% |
| ! | TGCAAATGGATAATAACAAA+GGG | + | chr1.3:58212217-58212236 | MS.gene44077:CDS | 25.0% |
| !! | TGGTAATAATAATGGTAATG+GGG | + | chr1.3:58213148-58213167 | MS.gene44077:CDS | 25.0% |
| !!! | ACTTATGTTTAACTGGTTTT+TGG | + | chr1.3:58211565-58211584 | MS.gene44077:intron | 25.0% |
| !!! | ATCCATAATATCTCCTTTTT+TGG | - | chr1.3:58212667-58212686 | None:intergenic | 25.0% |
| !!! | GTTTTCTAGTTAAGTTTCTA+GGG | + | chr1.3:58212886-58212905 | MS.gene44077:CDS | 25.0% |
| !!! | TGTTAATTTTGATTTGTCTG+AGG | + | chr1.3:58212356-58212375 | MS.gene44077:CDS | 25.0% |
| AAACTGCTTCAGAAAATTGA+AGG | + | chr1.3:58211662-58211681 | MS.gene44077:CDS | 30.0% | |
| AAAGGGAAAAAAGGTAAGAA+AGG | + | chr1.3:58212993-58213012 | MS.gene44077:CDS | 30.0% | |
| AAGAAAAGAAGAAAGAGACA+TGG | - | chr1.3:58211698-58211717 | None:intergenic | 30.0% | |
| AAGGGTAAAAGTGGAAATTA+CGG | + | chr1.3:58212708-58212727 | MS.gene44077:CDS | 30.0% | |
| AAGGTTAATATCCATTGTGA+AGG | + | chr1.3:58211620-58211639 | MS.gene44077:CDS | 30.0% | |
| AATAAAGGGGAAAAGCAAAA+GGG | + | chr1.3:58212789-58212808 | MS.gene44077:CDS | 30.0% | |
| AATTACGGTGAGGTAAAAAA+TGG | + | chr1.3:58212723-58212742 | MS.gene44077:CDS | 30.0% | |
| ACATCCATCAATGAACTATA+TGG | + | chr1.3:58213529-58213548 | MS.gene44077:CDS | 30.0% | |
| AGCAAGAAGAAAAATGGTAA+AGG | + | chr1.3:58212846-58212865 | MS.gene44077:CDS | 30.0% | |
| AGCCAAAAAAGGAGATATTA+TGG | + | chr1.3:58212662-58212681 | MS.gene44077:CDS | 30.0% | |
| AGGTAAGAAAGGTGAAAAAT+TGG | + | chr1.3:58213004-58213023 | MS.gene44077:CDS | 30.0% | |
| ATGGAGGTAAGAAGAATAAA+GGG | + | chr1.3:58212775-58212794 | MS.gene44077:CDS | 30.0% | |
| ATTTGCATGTTCTTAAACTG+AGG | - | chr1.3:58212204-58212223 | None:intergenic | 30.0% | |
| CAAATGGATAATAACAAAGG+GGG | + | chr1.3:58212219-58212238 | MS.gene44077:CDS | 30.0% | |
| CATCATAAAGTTGGAAACTT+TGG | - | chr1.3:58211879-58211898 | None:intergenic | 30.0% | |
| CATCCATCAATGAACTATAT+GGG | + | chr1.3:58213530-58213549 | MS.gene44077:CDS | 30.0% | |
| CTTGGAAAAAAGAGCAAAAA+GGG | + | chr1.3:58212909-58212928 | MS.gene44077:CDS | 30.0% | |
| GCAAATGGATAATAACAAAG+GGG | + | chr1.3:58212218-58212237 | MS.gene44077:CDS | 30.0% | |
| GTACAGATTCAACTTTAACT+AGG | - | chr1.3:58211547-58211566 | None:intergenic | 30.0% | |
| TATCCACAACATATGATGTA+TGG | + | chr1.3:58213494-58213513 | MS.gene44077:CDS | 30.0% | |
| TCAAAAAGCTGAAAAGTTCA+GGG | + | chr1.3:58212106-58212125 | MS.gene44077:CDS | 30.0% | |
| TCAGTTTAAGAACATGCAAA+TGG | + | chr1.3:58212203-58212222 | MS.gene44077:CDS | 30.0% | |
| TGAATATAGATGCAGAACAA+GGG | + | chr1.3:58212043-58212062 | MS.gene44077:CDS | 30.0% | |
| ! | ATATAGTTCATTGATGGATG+TGG | - | chr1.3:58213530-58213549 | None:intergenic | 30.0% |
| ! | TTCATATCTTTTCCTCCTTT+AGG | - | chr1.3:58212312-58212331 | None:intergenic | 30.0% |
| !! | AACATGTTTCTGAGATTTGT+TGG | - | chr1.3:58212340-58212359 | None:intergenic | 30.0% |
| !! | ACATGTTTCTGAGATTTGTT+GGG | - | chr1.3:58212339-58212358 | None:intergenic | 30.0% |
| !! | GGTAATAATAATGGTAATGG+GGG | + | chr1.3:58213149-58213168 | MS.gene44077:CDS | 30.0% |
| !!! | GGTTTTCTAGTTAAGTTTCT+AGG | + | chr1.3:58212885-58212904 | MS.gene44077:CDS | 30.0% |
| !!! | TAATTTTGATTTGTCTGAGG+AGG | + | chr1.3:58212359-58212378 | MS.gene44077:CDS | 30.0% |
| !!! | TCCATTGTTTTTGTTCTTGT+CGG | - | chr1.3:58212946-58212965 | None:intergenic | 30.0% |
| AACAACAGCAAAGGGAAAAA+AGG | + | chr1.3:58212984-58213003 | MS.gene44077:CDS | 35.0% | |
| AACAAGCCTCAGAATCAAAA+GGG | + | chr1.3:58212249-58212268 | MS.gene44077:CDS | 35.0% | |
| AAGAACAAAAACAATGGAGG+AGG | + | chr1.3:58212948-58212967 | MS.gene44077:CDS | 35.0% | |
| AATAGCAACAACAACAGCAA+AGG | + | chr1.3:58212975-58212994 | MS.gene44077:CDS | 35.0% | |
| AATCAAAAGGGTCAAAAAGG+TGG | + | chr1.3:58212261-58212280 | MS.gene44077:CDS | 35.0% | |
| AATGAATAAGATGGGTCCAA+TGG | + | chr1.3:58213220-58213239 | MS.gene44077:CDS | 35.0% | |
| AATGGAAATGGAAATGGGAA+AGG | + | chr1.3:58213092-58213111 | MS.gene44077:CDS | 35.0% | |
| AATGGTAAAGGTAAAAACGG+TGG | + | chr1.3:58212858-58212877 | MS.gene44077:CDS | 35.0% | |
| ACAACAACAACAGCAATACA+TGG | + | chr1.3:58213385-58213404 | MS.gene44077:CDS | 35.0% | |
| ATAGCAACAACAACAGCAAA+GGG | + | chr1.3:58212976-58212995 | MS.gene44077:CDS | 35.0% | |
| ATGAATAAGATGGGTCCAAT+GGG | + | chr1.3:58213221-58213240 | MS.gene44077:CDS | 35.0% | |
| ATGAATGGTGGCTATTATCA+AGG | + | chr1.3:58213317-58213336 | MS.gene44077:CDS | 35.0% | |
| ATGGCAGCAATGAATAAGAT+GGG | + | chr1.3:58213212-58213231 | MS.gene44077:CDS | 35.0% | |
| CAGAATCAAAAGGGTCAAAA+AGG | + | chr1.3:58212258-58212277 | MS.gene44077:CDS | 35.0% | |
| CAGTTTCAAAATCCTAAAGG+AGG | + | chr1.3:58212297-58212316 | MS.gene44077:CDS | 35.0% | |
| CTCAAAAAGCTGAAAAGTTC+AGG | + | chr1.3:58212105-58212124 | MS.gene44077:CDS | 35.0% | |
| GAATAAAGGGGAAAAGCAAA+AGG | + | chr1.3:58212788-58212807 | MS.gene44077:CDS | 35.0% | |
| GACAAGAACAAAAACAATGG+AGG | + | chr1.3:58212945-58212964 | MS.gene44077:CDS | 35.0% | |
| GATGGAGGTAAGAAGAATAA+AGG | + | chr1.3:58212774-58212793 | MS.gene44077:CDS | 35.0% | |
| GCACAGTTTCAAAATCCTAA+AGG | + | chr1.3:58212294-58212313 | MS.gene44077:CDS | 35.0% | |
| GCTTGGAAAAAAGAGCAAAA+AGG | + | chr1.3:58212908-58212927 | MS.gene44077:CDS | 35.0% | |
| GGAAACTTTGGATGAATGAA+GGG | - | chr1.3:58211867-58211886 | None:intergenic | 35.0% | |
| GGTGAGGTAAAAAATGGTAA+TGG | + | chr1.3:58212729-58212748 | MS.gene44077:CDS | 35.0% | |
| GTGAATATAGATGCAGAACA+AGG | + | chr1.3:58212042-58212061 | MS.gene44077:CDS | 35.0% | |
| GTGGAAATGGAAATGGAAAT+GGG | + | chr1.3:58213087-58213106 | MS.gene44077:CDS | 35.0% | |
| TAAAAGTGGAAATTACGGTG+AGG | + | chr1.3:58212713-58212732 | MS.gene44077:CDS | 35.0% | |
| TAAGGAGGGTTTAGAAACAT+GGG | - | chr1.3:58211830-58211849 | None:intergenic | 35.0% | |
| TCACTGAAAACATGAGTGAT+TGG | - | chr1.3:58213590-58213609 | None:intergenic | 35.0% | |
| TCTGTAGAATTGTCTTCTCA+AGG | + | chr1.3:58211601-58211620 | MS.gene44077:intron | 35.0% | |
| TGGAAACTTTGGATGAATGA+AGG | - | chr1.3:58211868-58211887 | None:intergenic | 35.0% | |
| TGGAGGTAAGAAGAATAAAG+GGG | + | chr1.3:58212776-58212795 | MS.gene44077:CDS | 35.0% | |
| TTAAGGAGGGTTTAGAAACA+TGG | - | chr1.3:58211831-58211850 | None:intergenic | 35.0% | |
| ! | CTGAACTTTTCAGCTTTTTG+AGG | - | chr1.3:58212107-58212126 | None:intergenic | 35.0% |
| ! | GTGATGGTATGATGATGAAT+GGG | + | chr1.3:58212580-58212599 | MS.gene44077:CDS | 35.0% |
| ! | TTTTGATGAGGATGAAGAAG+AGG | + | chr1.3:58212425-58212444 | MS.gene44077:CDS | 35.0% |
| !! | CTATGACGATGATTTTGATG+AGG | + | chr1.3:58212413-58212432 | MS.gene44077:CDS | 35.0% |
| !! | GAGGTAAAAAATGGTAATGG+AGG | + | chr1.3:58212732-58212751 | MS.gene44077:CDS | 35.0% |
| !! | GTAAAAAATGGTAATGGAGG+TGG | + | chr1.3:58212735-58212754 | MS.gene44077:CDS | 35.0% |
| !! | TTTTGACCCTTTTGATTCTG+AGG | - | chr1.3:58212258-58212277 | None:intergenic | 35.0% |
| AAAAAGAGCAAAAAGGGAGG+AGG | + | chr1.3:58212915-58212934 | MS.gene44077:CDS | 40.0% | |
| AAAAGTGGTAAGGGTGGAAA+TGG | + | chr1.3:58213074-58213093 | MS.gene44077:CDS | 40.0% | |
| AACAAAAACAATGGAGGAGG+TGG | + | chr1.3:58212951-58212970 | MS.gene44077:CDS | 40.0% | |
| ACCTATGCAAATGCAGATGA+AGG | + | chr1.3:58212689-58212708 | MS.gene44077:CDS | 40.0% | |
| AGGGAAACATGCTGAACTAT+GGG | + | chr1.3:58212125-58212144 | MS.gene44077:CDS | 40.0% | |
| ATATGATGTATGGAGGAGGA+AGG | + | chr1.3:58213504-58213523 | MS.gene44077:CDS | 40.0% | |
| ATCACTCCTCATGGTAAAAG+TGG | + | chr1.3:58213059-58213078 | MS.gene44077:CDS | 40.0% | |
| ATGATGGCTATGATGCAGAA+TGG | + | chr1.3:58212534-58212553 | MS.gene44077:CDS | 40.0% | |
| ATGCAGATGAAGGGTAAAAG+TGG | + | chr1.3:58212699-58212718 | MS.gene44077:CDS | 40.0% | |
| CAACAAGCCTCAGAATCAAA+AGG | + | chr1.3:58212248-58212267 | MS.gene44077:CDS | 40.0% | |
| CAACATATGATGTATGGAGG+AGG | + | chr1.3:58213500-58213519 | MS.gene44077:CDS | 40.0% | |
| CCACAACATATGATGTATGG+AGG | + | chr1.3:58213497-58213516 | MS.gene44077:CDS | 40.0% | |
| CCTATGCAAATGCAGATGAA+GGG | + | chr1.3:58212690-58212709 | MS.gene44077:CDS | 40.0% | |
| CCTCATGGTAAAAGTGGTAA+GGG | + | chr1.3:58213065-58213084 | MS.gene44077:CDS | 40.0% | |
| CCTCCATACATCATATGTTG+TGG | - | chr1.3:58213500-58213519 | None:intergenic | 40.0% | |
| GACTTTGATATCACTCCTCA+TGG | + | chr1.3:58213050-58213069 | MS.gene44077:CDS | 40.0% | |
| GAGGAATTTGATGAGAGTGA+TGG | + | chr1.3:58212378-58212397 | MS.gene44077:CDS | 40.0% | |
| GAGGAGTGATATCAAAGTCT+TGG | - | chr1.3:58213049-58213068 | None:intergenic | 40.0% | |
| GATGGCAGCAATGAATAAGA+TGG | + | chr1.3:58213211-58213230 | MS.gene44077:CDS | 40.0% | |
| GCCGACAAGAACAAAAACAA+TGG | + | chr1.3:58212942-58212961 | MS.gene44077:CDS | 40.0% | |
| GGAAAAAAGAGCAAAAAGGG+AGG | + | chr1.3:58212912-58212931 | MS.gene44077:CDS | 40.0% | |
| GGTCCCATATAGTTCATTGA+TGG | - | chr1.3:58213536-58213555 | None:intergenic | 40.0% | |
| GGTGGAAATGGAAATGGAAA+TGG | + | chr1.3:58213086-58213105 | MS.gene44077:CDS | 40.0% | |
| TAATGGAGGTGGTAAGAAAG+GGG | + | chr1.3:58212746-58212765 | MS.gene44077:CDS | 40.0% | |
| TATAGATGCAGAACAAGGGA+AGG | + | chr1.3:58212047-58212066 | MS.gene44077:CDS | 40.0% | |
| TCCTCATGGTAAAAGTGGTA+AGG | + | chr1.3:58213064-58213083 | MS.gene44077:CDS | 40.0% | |
| TGCTGTTGCTGATAAGGATT+TGG | - | chr1.3:58213359-58213378 | None:intergenic | 40.0% | |
| TTCATCATCATACCATCACC+AGG | - | chr1.3:58212579-58212598 | None:intergenic | 40.0% | |
| ! | AACATCCCAGGTAATGGTAA+AGG | + | chr1.3:58212615-58212634 | MS.gene44077:CDS | 40.0% |
| ! | GGTGATGGTATGATGATGAA+TGG | + | chr1.3:58212579-58212598 | MS.gene44077:CDS | 40.0% |
| ! | GTAATGGAGGTGGTAAGAAA+GGG | + | chr1.3:58212745-58212764 | MS.gene44077:CDS | 40.0% |
| ! | GTTGTTGTTGTTGTGATGCA+GGG | + | chr1.3:58212010-58212029 | MS.gene44077:intron | 40.0% |
| ! | TGTTGTTGTTGTTGTGATGC+AGG | + | chr1.3:58212009-58212028 | MS.gene44077:intron | 40.0% |
| ! | TTGTTGTTGTTGTGATGCAG+GGG | + | chr1.3:58212011-58212030 | MS.gene44077:intron | 40.0% |
| !! | CTAGTTAAGTTTCTAGGGCT+TGG | + | chr1.3:58212891-58212910 | MS.gene44077:CDS | 40.0% |
| AAACATGCTGAACTATGGGG+TGG | + | chr1.3:58212129-58212148 | MS.gene44077:CDS | 45.0% | |
| AAAGGGGAAAAGCAAAAGGG+TGG | + | chr1.3:58212792-58212811 | MS.gene44077:CDS | 45.0% | |
| AATGGAGGTGGTAAGAAAGG+GGG | + | chr1.3:58212747-58212766 | MS.gene44077:CDS | 45.0% | |
| ACCATTACCTGGGATGTTCA+TGG | - | chr1.3:58212613-58212632 | None:intergenic | 45.0% | |
| ATTGAACCCATCTGACCCAT+TGG | - | chr1.3:58213239-58213258 | None:intergenic | 45.0% | |
| CAGCAACAACAAATGCAGCA+AGG | + | chr1.3:58213455-58213474 | MS.gene44077:CDS | 45.0% | |
| CAGGGAAACATGCTGAACTA+TGG | + | chr1.3:58212124-58212143 | MS.gene44077:CDS | 45.0% | |
| CATGGTAAAAGTGGTAAGGG+TGG | + | chr1.3:58213068-58213087 | MS.gene44077:CDS | 45.0% | |
| CCCTTCATCTGCATTTGCAT+AGG | - | chr1.3:58212693-58212712 | None:intergenic | 45.0% | |
| CTATGATGCAGAATGGTCGT+GGG | + | chr1.3:58212541-58212560 | MS.gene44077:CDS | 45.0% | |
| CTCCTCCTTTACCATTACCT+GGG | - | chr1.3:58212623-58212642 | None:intergenic | 45.0% | |
| GAAGAAGAGGAGTTTGGTCA+CGG | + | chr1.3:58212438-58212457 | MS.gene44077:CDS | 45.0% | |
| GAGGATGAAGAAGAGGAGTT+TGG | + | chr1.3:58212432-58212451 | MS.gene44077:CDS | 45.0% | |
| GAGTGATTGGATCTGCCATA+GGG | - | chr1.3:58213577-58213596 | None:intergenic | 45.0% | |
| GATGGGTGCAATGAATCAGA+TGG | + | chr1.3:58213193-58213212 | MS.gene44077:CDS | 45.0% | |
| GGGAAACATGCTGAACTATG+GGG | + | chr1.3:58212126-58212145 | MS.gene44077:CDS | 45.0% | |
| GGTAAAGGTAAAAACGGTGG+TGG | + | chr1.3:58212861-58212880 | MS.gene44077:CDS | 45.0% | |
| GGTAAGGGTGGAAATGGAAA+TGG | + | chr1.3:58213080-58213099 | MS.gene44077:CDS | 45.0% | |
| TCCATTATTGGCATTGCCCT+TGG | - | chr1.3:58213126-58213145 | None:intergenic | 45.0% | |
| TCTGATTCATTGCACCCATC+TGG | - | chr1.3:58213193-58213212 | None:intergenic | 45.0% | |
| TCTGCTCACAACCTTCACAA+TGG | - | chr1.3:58211634-58211653 | None:intergenic | 45.0% | |
| TGAGTGATTGGATCTGCCAT+AGG | - | chr1.3:58213578-58213597 | None:intergenic | 45.0% | |
| TGGGTTCAATGGACCAAATG+AGG | + | chr1.3:58213249-58213268 | MS.gene44077:CDS | 45.0% | |
| TTGTGAAGGTTGTGAGCAGA+AGG | + | chr1.3:58211634-58211653 | MS.gene44077:CDS | 45.0% | |
| ! | AAAGGTAAAAACGGTGGTGG+TGG | + | chr1.3:58212864-58212883 | MS.gene44077:CDS | 45.0% |
| ! | AATGGGTCAGATGGGTTCAA+TGG | + | chr1.3:58213238-58213257 | MS.gene44077:CDS | 45.0% |
| ! | ATCCCAGGTAATGGTAAAGG+AGG | + | chr1.3:58212618-58212637 | MS.gene44077:CDS | 45.0% |
| ! | TGCTGTTGCTGTTGCTGATA+AGG | - | chr1.3:58213365-58213384 | None:intergenic | 45.0% |
| !! | AATGGTAATGGGGGCCATAT+GGG | + | chr1.3:58213158-58213177 | MS.gene44077:CDS | 45.0% |
| !! | AGCTTTTTGAGGAGCTTTGC+TGG | - | chr1.3:58212096-58212115 | None:intergenic | 45.0% |
| !! | CCCTTACCACTTTTACCATG+AGG | - | chr1.3:58213068-58213087 | None:intergenic | 45.0% |
| !! | GGCAATGCCAATAATGGACA+TGG | + | chr1.3:58213128-58213147 | MS.gene44077:CDS | 45.0% |
| !! | GGTAATGGAGGTGGTAAGAA+AGG | + | chr1.3:58212744-58212763 | MS.gene44077:CDS | 45.0% |
| !! | TAATGGTAATGGGGGCCATA+TGG | + | chr1.3:58213157-58213176 | MS.gene44077:CDS | 45.0% |
| AATGGTAAAGGAGGAGGTGG+TGG | + | chr1.3:58212627-58212646 | MS.gene44077:CDS | 50.0% | |
| ACCAATGCCATCACACCCTA+TGG | + | chr1.3:58213559-58213578 | MS.gene44077:CDS | 50.0% | |
| ATGGGTCCAATGGGTCAGAT+GGG | + | chr1.3:58213230-58213249 | MS.gene44077:CDS | 50.0% | |
| ATGGTCATGGCCATGGTCAA+GGG | + | chr1.3:58212463-58212482 | MS.gene44077:CDS | 50.0% | |
| CCTCCTCCTTTACCATTACC+TGG | - | chr1.3:58212624-58212643 | None:intergenic | 50.0% | |
| GCCAAGGGCAATGCCAATAA+TGG | + | chr1.3:58213122-58213141 | MS.gene44077:CDS | 50.0% | |
| GCCATGAACATCCCAGGTAA+TGG | + | chr1.3:58212609-58212628 | MS.gene44077:CDS | 50.0% | |
| GCTATGATGCAGAATGGTCG+TGG | + | chr1.3:58212540-58212559 | MS.gene44077:CDS | 50.0% | |
| GGAAAAGCAAAAGGGTGGTG+GGG | + | chr1.3:58212797-58212816 | MS.gene44077:CDS | 50.0% | |
| GGGAAAAGCAAAAGGGTGGT+GGG | + | chr1.3:58212796-58212815 | MS.gene44077:CDS | 50.0% | |
| GGTAAGAAAGGGGGTGATGA+TGG | + | chr1.3:58212756-58212775 | MS.gene44077:CDS | 50.0% | |
| TTATTGGCATTGCCCTTGGC+AGG | - | chr1.3:58213122-58213141 | None:intergenic | 50.0% | |
| TTTGGTCACGGACATGGTCA+TGG | + | chr1.3:58212450-58212469 | MS.gene44077:CDS | 50.0% | |
| ! | ATAGGGTGTGATGGCATTGG+TGG | - | chr1.3:58213560-58213579 | None:intergenic | 50.0% |
| ! | CCAGGTAATGGTAAAGGAGG+AGG | + | chr1.3:58212621-58212640 | MS.gene44077:CDS | 50.0% |
| ! | GAAAAGCAAAAGGGTGGTGG+GGG | + | chr1.3:58212798-58212817 | MS.gene44077:CDS | 50.0% |
| ! | GGTAATGGTAAAGGAGGAGG+TGG | + | chr1.3:58212624-58212643 | MS.gene44077:CDS | 50.0% |
| ! | TGCAGAACAAGGGAAGGTGT+TGG | + | chr1.3:58212053-58212072 | MS.gene44077:CDS | 50.0% |
| !! | AAGAAAGGGGGTGATGATGG+AGG | + | chr1.3:58212759-58212778 | MS.gene44077:CDS | 50.0% |
| ATGGGTCCAATGGGCCAGAT+GGG | + | chr1.3:58213176-58213195 | MS.gene44077:CDS | 55.0% | |
| ATTGCACCCATCTGGCCCAT+TGG | - | chr1.3:58213185-58213204 | None:intergenic | 55.0% | |
| CATGGTCATGGCCATGGTCA+AGG | + | chr1.3:58212462-58212481 | MS.gene44077:CDS | 55.0% | |
| GAGGAGTTTGGTCACGGACA+TGG | + | chr1.3:58212444-58212463 | MS.gene44077:CDS | 55.0% | |
| GATGGGTCCAATGGGTCAGA+TGG | + | chr1.3:58213229-58213248 | MS.gene44077:CDS | 55.0% | |
| GCCATAGGGTGTGATGGCAT+TGG | - | chr1.3:58213563-58213582 | None:intergenic | 55.0% | |
| GGATCTGCCATAGGGTGTGA+TGG | - | chr1.3:58213569-58213588 | None:intergenic | 55.0% | |
| GGGGAAAAGCAAAAGGGTGG+TGG | + | chr1.3:58212795-58212814 | MS.gene44077:CDS | 55.0% | |
| TATGGGTCCAATGGGCCAGA+TGG | + | chr1.3:58213175-58213194 | MS.gene44077:CDS | 55.0% | |
| TCTGGCCCATTGGACCCATA+TGG | - | chr1.3:58213175-58213194 | None:intergenic | 55.0% | |
| TGCCCAAATCCATTGCCTGG+AGG | - | chr1.3:58212489-58212508 | None:intergenic | 55.0% | |
| TGCTGCCCAAATCCATTGCC+TGG | - | chr1.3:58212492-58212511 | None:intergenic | 55.0% | |
| ! | GGACCAAATGAGGAGCATGC+CGG | + | chr1.3:58213259-58213278 | MS.gene44077:CDS | 55.0% |
| ! | GGCCTCCAGGCAATGGATTT+GGG | + | chr1.3:58212484-58212503 | MS.gene44077:CDS | 55.0% |
| !! | AAAAGGGTGGTGGGGGAGAT+TGG | + | chr1.3:58212805-58212824 | MS.gene44077:CDS | 55.0% |
| !! | AAAGGGTGGTGGGGGAGATT+GGG | + | chr1.3:58212806-58212825 | MS.gene44077:CDS | 55.0% |
| !! | CAAGGGAAGGTGTTGGTGAC+AGG | + | chr1.3:58212060-58212079 | MS.gene44077:CDS | 55.0% |
| AATGGTCGTGGGCCACAGCT+AGG | + | chr1.3:58212552-58212571 | MS.gene44077:CDS | 60.0% | |
| ATGGTCGTGGGCCACAGCTA+GGG | + | chr1.3:58212553-58212572 | MS.gene44077:CDS | 60.0% | |
| CACGGACATGGTCATGGCCA+TGG | + | chr1.3:58212456-58212475 | MS.gene44077:CDS | 60.0% | |
| CCTGCTGCCATGAACATCCC+AGG | + | chr1.3:58212603-58212622 | MS.gene44077:CDS | 60.0% | |
| CCTGGGATGTTCATGGCAGC+AGG | - | chr1.3:58212606-58212625 | None:intergenic | 60.0% | |
| CTGCCGGCATGCTCCTCATT+TGG | - | chr1.3:58213265-58213284 | None:intergenic | 60.0% | |
| GGGGGCCATATGGGTCCAAT+GGG | + | chr1.3:58213167-58213186 | MS.gene44077:CDS | 60.0% | |
| TGGGGGCCATATGGGTCCAA+TGG | + | chr1.3:58213166-58213185 | MS.gene44077:CDS | 60.0% | |
| ! | GGGCCTCCAGGCAATGGATT+TGG | + | chr1.3:58212483-58212502 | MS.gene44077:CDS | 60.0% |
| !! | AAGGGTGGTGGGGGAGATTG+GGG | + | chr1.3:58212807-58212826 | MS.gene44077:CDS | 60.0% |
| !! | GGGAAAGGTGCTCCTGCCAA+GGG | + | chr1.3:58213107-58213126 | MS.gene44077:CDS | 60.0% |
| !! | GGGTGTGATGGCATTGGTGG+CGG | - | chr1.3:58213557-58213576 | None:intergenic | 60.0% |
| !! | TGGGAAAGGTGCTCCTGCCA+AGG | + | chr1.3:58213106-58213125 | MS.gene44077:CDS | 60.0% |
| AGTGCAAGGGTTACCGGCCG+GGG | + | chr1.3:58213283-58213302 | MS.gene44077:CDS | 65.0% | |
| ATTCATCGCCGCAGCTGCCC+CGG | - | chr1.3:58213303-58213322 | None:intergenic | 65.0% | |
| CAGTGCAAGGGTTACCGGCC+GGG | + | chr1.3:58213282-58213301 | MS.gene44077:CDS | 65.0% | |
| CCACAGCTAGGGCCTGGTGA+TGG | + | chr1.3:58212564-58212583 | MS.gene44077:CDS | 65.0% | |
| CCATCACCAGGCCCTAGCTG+TGG | - | chr1.3:58212567-58212586 | None:intergenic | 65.0% | |
| GCAGCTGCGGCGATGAATGG+TGG | + | chr1.3:58213305-58213324 | MS.gene44077:CDS | 65.0% | |
| GCAGTGCAAGGGTTACCGGC+CGG | + | chr1.3:58213281-58213300 | MS.gene44077:CDS | 65.0% | |
| GCCGGCAGTGCAAGGGTTAC+CGG | + | chr1.3:58213277-58213296 | MS.gene44077:CDS | 65.0% | |
| GCCGGTAACCCTTGCACTGC+CGG | - | chr1.3:58213281-58213300 | None:intergenic | 65.0% | |
| GGAGCATGCCGGCAGTGCAA+GGG | + | chr1.3:58213270-58213289 | MS.gene44077:CDS | 65.0% | |
| GGTCAAGGGCCTCCAGGCAA+TGG | + | chr1.3:58212477-58212496 | MS.gene44077:CDS | 65.0% | |
| TGCCTGGAGGCCCTTGACCA+TGG | - | chr1.3:58212476-58212495 | None:intergenic | 65.0% | |
| ! | AGGAGCATGCCGGCAGTGCA+AGG | + | chr1.3:58213269-58213288 | MS.gene44077:CDS | 65.0% |
| GGCCATGGTCAAGGGCCTCC+AGG | + | chr1.3:58212471-58212490 | MS.gene44077:CDS | 70.0% | |
| GGGGCAGCTGCGGCGATGAA+TGG | + | chr1.3:58213302-58213321 | MS.gene44077:CDS | 70.0% | |
| CGTGGGCCACAGCTAGGGCC+TGG | + | chr1.3:58212558-58212577 | MS.gene44077:CDS | 75.0% | |
| GTTACCGGCCGGGGCAGCTG+CGG | + | chr1.3:58213292-58213311 | MS.gene44077:CDS | 75.0% | |
| ! | ATCGCCGCAGCTGCCCCGGC+CGG | - | chr1.3:58213299-58213318 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 58211450 | 58213640 | 58211450 | ID=MS.gene44077 |
| chr1.3 | mRNA | 58211450 | 58213640 | 58211450 | ID=MS.gene44077.t1;Parent=MS.gene44077 |
| chr1.3 | exon | 58211450 | 58211479 | 58211450 | ID=MS.gene44077.t1.exon1;Parent=MS.gene44077.t1 |
| chr1.3 | CDS | 58211450 | 58211479 | 58211450 | ID=cds.MS.gene44077.t1;Parent=MS.gene44077.t1 |
| chr1.3 | exon | 58211608 | 58211683 | 58211608 | ID=MS.gene44077.t1.exon2;Parent=MS.gene44077.t1 |
| chr1.3 | CDS | 58211608 | 58211683 | 58211608 | ID=cds.MS.gene44077.t1;Parent=MS.gene44077.t1 |
| chr1.3 | exon | 58212031 | 58213640 | 58212031 | ID=MS.gene44077.t1.exon3;Parent=MS.gene44077.t1 |
| chr1.3 | CDS | 58212031 | 58213640 | 58212031 | ID=cds.MS.gene44077.t1;Parent=MS.gene44077.t1 |
| Gene Sequence |
| Protein sequence |
