Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44222.t1 | XP_003629273.1 | 98.5 | 479 | 6 | 1 | 1 | 478 | 1 | 479 | 2.90E-251 | 877.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44222.t1 | Q9SD20 | 62.8 | 465 | 129 | 7 | 12 | 475 | 6 | 427 | 1.3e-146 | 521.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44222.t1 | G7LB76 | 98.5 | 479 | 6 | 1 | 1 | 478 | 1 | 479 | 2.1e-251 | 877.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene44222 | 0.832927 | 7.15E-56 | -1.69E-46 |
| MS.gene049596 | MS.gene44222 | 0.840705 | 7.40E-58 | -1.69E-46 |
| MS.gene04985 | MS.gene44222 | 0.806527 | 7.88E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene44222 | 0.894698 | 1.93E-75 | -1.69E-46 |
| MS.gene050297 | MS.gene44222 | 0.894219 | 3.03E-75 | -1.69E-46 |
| MS.gene050648 | MS.gene44222 | 0.805046 | 1.61E-49 | -1.69E-46 |
| MS.gene051094 | MS.gene44222 | 0.813586 | 2.37E-51 | -1.69E-46 |
| MS.gene05124 | MS.gene44222 | 0.836167 | 1.10E-56 | -1.69E-46 |
| MS.gene051629 | MS.gene44222 | 0.800259 | 1.57E-48 | -1.69E-46 |
| MS.gene051742 | MS.gene44222 | 0.82931 | 5.53E-55 | -1.69E-46 |
| MS.gene051955 | MS.gene44222 | 0.821765 | 3.39E-53 | -1.69E-46 |
| MS.gene052143 | MS.gene44222 | 0.888672 | 4.80E-73 | -1.69E-46 |
| MS.gene052308 | MS.gene44222 | 0.843009 | 1.82E-58 | -1.69E-46 |
| MS.gene052367 | MS.gene44222 | 0.896449 | 3.65E-76 | -1.69E-46 |
| MS.gene053173 | MS.gene44222 | 0.83679 | 7.61E-57 | -1.69E-46 |
| MS.gene053348 | MS.gene44222 | 0.80686 | 6.70E-50 | -1.69E-46 |
| MS.gene053416 | MS.gene44222 | 0.868087 | 8.47E-66 | -1.69E-46 |
| MS.gene053417 | MS.gene44222 | 0.868774 | 5.08E-66 | -1.69E-46 |
| MS.gene05369 | MS.gene44222 | 0.834831 | 2.39E-56 | -1.69E-46 |
| MS.gene054551 | MS.gene44222 | 0.832699 | 8.14E-56 | -1.69E-46 |
| MS.gene054593 | MS.gene44222 | 0.820595 | 6.31E-53 | -1.69E-46 |
| MS.gene054643 | MS.gene44222 | 0.828202 | 1.03E-54 | -1.69E-46 |
| MS.gene055308 | MS.gene44222 | 0.830848 | 2.33E-55 | -1.69E-46 |
| MS.gene055411 | MS.gene44222 | 0.80124 | 9.88E-49 | -1.69E-46 |
| MS.gene055578 | MS.gene44222 | 0.849222 | 3.71E-60 | -1.69E-46 |
| MS.gene055884 | MS.gene44222 | 0.801148 | 1.03E-48 | -1.69E-46 |
| MS.gene055957 | MS.gene44222 | 0.865689 | 4.92E-65 | -1.69E-46 |
| MS.gene056041 | MS.gene44222 | 0.88946 | 2.38E-73 | -1.69E-46 |
| MS.gene056042 | MS.gene44222 | 0.817599 | 3.03E-52 | -1.69E-46 |
| MS.gene05640 | MS.gene44222 | 0.815039 | 1.13E-51 | -1.69E-46 |
| MS.gene056526 | MS.gene44222 | 0.866129 | 3.57E-65 | -1.69E-46 |
| MS.gene057458 | MS.gene44222 | 0.838579 | 2.64E-57 | -1.69E-46 |
| MS.gene057483 | MS.gene44222 | 0.866808 | 2.18E-65 | -1.69E-46 |
| MS.gene058196 | MS.gene44222 | 0.818249 | 2.16E-52 | -1.69E-46 |
| MS.gene058197 | MS.gene44222 | 0.818248 | 2.16E-52 | -1.69E-46 |
| MS.gene058198 | MS.gene44222 | 0.816887 | 4.39E-52 | -1.69E-46 |
| MS.gene058818 | MS.gene44222 | 0.855338 | 6.75E-62 | -1.69E-46 |
| MS.gene058844 | MS.gene44222 | 0.827482 | 1.53E-54 | -1.69E-46 |
| MS.gene058853 | MS.gene44222 | 0.803089 | 4.12E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene44222 | 0.844671 | 6.54E-59 | -1.69E-46 |
| MS.gene059553 | MS.gene44222 | 0.824467 | 7.95E-54 | -1.69E-46 |
| MS.gene060473 | MS.gene44222 | 0.87639 | 1.45E-68 | -1.69E-46 |
| MS.gene060565 | MS.gene44222 | 0.878778 | 2.13E-69 | -1.69E-46 |
| MS.gene06057 | MS.gene44222 | 0.872773 | 2.46E-67 | -1.69E-46 |
| MS.gene06093 | MS.gene44222 | 0.850218 | 1.96E-60 | -1.69E-46 |
| MS.gene061099 | MS.gene44222 | 0.849005 | 4.27E-60 | -1.69E-46 |
| MS.gene061260 | MS.gene44222 | 0.88925 | 2.87E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44222.t1 | MTR_8g075260 | 98.539 | 479 | 6 | 1 | 1 | 478 | 1 | 479 | 0.0 | 976 |
| MS.gene44222.t1 | MTR_7g058930 | 58.848 | 243 | 95 | 2 | 24 | 265 | 11 | 249 | 1.61e-96 | 293 |
| MS.gene44222.t1 | MTR_2g030510 | 56.202 | 258 | 104 | 3 | 16 | 265 | 23 | 279 | 2.33e-93 | 295 |
| MS.gene44222.t1 | MTR_7g059010 | 58.051 | 236 | 95 | 1 | 32 | 267 | 15 | 246 | 4.74e-93 | 284 |
| MS.gene44222.t1 | MTR_7g059010 | 58.051 | 236 | 95 | 1 | 32 | 267 | 32 | 263 | 3.16e-91 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44222.t1 | AT3G51280 | 67.457 | 464 | 107 | 8 | 12 | 474 | 6 | 426 | 0.0 | 600 |
| MS.gene44222.t1 | AT5G48850 | 65.842 | 202 | 69 | 0 | 34 | 235 | 25 | 226 | 7.20e-94 | 287 |
| MS.gene44222.t1 | AT1G04770 | 60.435 | 230 | 86 | 3 | 35 | 263 | 19 | 244 | 1.19e-91 | 281 |
| MS.gene44222.t1 | AT4G20900 | 50.549 | 273 | 121 | 2 | 8 | 266 | 9 | 281 | 4.52e-89 | 279 |
| MS.gene44222.t1 | AT4G20900 | 47.751 | 289 | 121 | 3 | 8 | 266 | 9 | 297 | 5.52e-85 | 269 |
| MS.gene44222.t1 | AT5G44330 | 50.649 | 231 | 109 | 2 | 34 | 264 | 46 | 271 | 2.32e-69 | 229 |
| MS.gene44222.t1 | AT5G22794 | 58.209 | 67 | 28 | 0 | 113 | 179 | 71 | 137 | 2.87e-18 | 84.3 |
| MS.gene44222.t1 | AT5G22794 | 50.746 | 67 | 26 | 1 | 113 | 179 | 71 | 130 | 4.17e-12 | 65.9 |
Find 91 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATTCTTGCTGCTGTTT+TGG | 0.178483 | 8.1:+31834615 | MS.gene44222:CDS |
| AATGAAAATGCTGCTACTTC+TGG | 0.215619 | 8.1:+31834658 | MS.gene44222:CDS |
| ACAACAATTCAAGATGAATT+TGG | 0.227598 | 8.1:+31834256 | MS.gene44222:CDS |
| AGAGAGCGATTCCGTTGTTT+TGG | 0.260744 | 8.1:+31832794 | MS.gene44222:CDS |
| CATTTGCTGTGCTCTTTCAT+AGG | 0.288854 | 8.1:-31834077 | None:intergenic |
| TGTGCCTCAATAGAGCTATT+TGG | 0.289144 | 8.1:-31833338 | None:intergenic |
| TAACTGCAGGTTTGACTCTA+TGG | 0.294689 | 8.1:-31834018 | None:intergenic |
| GATGCTTTCGCTGCATAAAA+TGG | 0.306036 | 8.1:-31834385 | None:intergenic |
| AACAACAAGATGTGCAATTT+AGG | 0.318920 | 8.1:+31833947 | MS.gene44222:CDS |
| TGATTTGTTGCCTGATACTA+AGG | 0.323363 | 8.1:+31834582 | MS.gene44222:CDS |
| AAATGATTCAGAACGAGTTC+TGG | 0.326927 | 8.1:-31832571 | None:intergenic |
| TTCTTGGTTCTTCATCAATC+TGG | 0.332090 | 8.1:+31834173 | MS.gene44222:CDS |
| CACTCCTCTGTTCATCATTT+CGG | 0.339620 | 8.1:-31834116 | None:intergenic |
| GTTGTTGATGTTGTTCTGAT+TGG | 0.343441 | 8.1:-31834238 | None:intergenic |
| TTATGTTCAGTTGGTGGATA+AGG | 0.365272 | 8.1:+31832765 | MS.gene44222:intron |
| ACAAAACAAGTTTACTCCTT+TGG | 0.369430 | 8.1:+31834333 | MS.gene44222:CDS |
| CATTGAAAGCCAACCCTTGT+TGG | 0.369825 | 8.1:-31833374 | None:intergenic |
| GTTTCAAGTCTCAGTGGAAC+AGG | 0.373627 | 8.1:+31833434 | MS.gene44222:CDS |
| ACAGGAAGCCACTAGATTAT+TGG | 0.376288 | 8.1:+31833452 | MS.gene44222:CDS |
| AGCCTTCTTGCTTTGTTCCC+AGG | 0.380484 | 8.1:-31834535 | None:intergenic |
| TCTTCAAAGTCCTTAGTATC+AGG | 0.383303 | 8.1:-31834592 | None:intergenic |
| ATCCCTTGATAATATTCTCT+TGG | 0.392842 | 8.1:+31832954 | MS.gene44222:CDS |
| TTGCACATCTTGTTGTTGTC+TGG | 0.396722 | 8.1:-31833941 | None:intergenic |
| AACAAGGTGAATGTGGAATT+AGG | 0.398538 | 8.1:+31834508 | MS.gene44222:CDS |
| ATGAAAATGCTGCTACTTCT+GGG | 0.406115 | 8.1:+31834659 | MS.gene44222:CDS |
| AATTGACAAGAGGAGGCTTA+AGG | 0.406569 | 8.1:+31834696 | MS.gene44222:CDS |
| CAACAAGGGTTGGCTTTCAA+TGG | 0.407357 | 8.1:+31833375 | MS.gene44222:CDS |
| AGTCAACTAACTTAAGCCTT+TGG | 0.418672 | 8.1:-31834748 | None:intergenic |
| TGTTATGAAGCAACAGAATA+GGG | 0.426367 | 8.1:+31832870 | MS.gene44222:CDS |
| AGGTGAACAAGGTGCTGATT+TGG | 0.430455 | 8.1:-31832529 | None:intergenic |
| TTGTTATGAAGCAACAGAAT+AGG | 0.435114 | 8.1:+31832869 | MS.gene44222:CDS |
| ATCATTTCACATCACTCATA+AGG | 0.435859 | 8.1:+31832587 | MS.gene44222:CDS |
| TGCAGCGAAAGCATCTTTCA+AGG | 0.438084 | 8.1:+31834393 | MS.gene44222:CDS |
| GGATAGTGCTTTGAAAGATA+TGG | 0.439771 | 8.1:+31832843 | MS.gene44222:CDS |
| GATTTGGAGGGTCTGAAACC+TGG | 0.448598 | 8.1:-31832513 | None:intergenic |
| CTGGCAACCTCAGCCTTGTA+AGG | 0.454869 | 8.1:+31834192 | MS.gene44222:CDS |
| AGACTTAAGAGAACAAGGTC+TGG | 0.456656 | 8.1:+31834445 | MS.gene44222:CDS |
| CTTGGTCCATCTGTAACTGC+AGG | 0.464222 | 8.1:-31834031 | None:intergenic |
| GTTGATGTTGTTCTGATTGG+TGG | 0.465660 | 8.1:-31834235 | None:intergenic |
| AACAACGGAATCGCTCTCTC+CGG | 0.472198 | 8.1:-31832790 | None:intergenic |
| TGTTCACCTGCAAAACCTCT+TGG | 0.478338 | 8.1:+31832543 | MS.gene44222:CDS |
| TGTTTAATGAAGGGAAACTT+AGG | 0.491546 | 8.1:+31833848 | MS.gene44222:intron |
| AGATGAGAATCTGAGCCTCT+TGG | 0.492459 | 8.1:-31834049 | None:intergenic |
| GATCCAAGAGAATATTATCA+AGG | 0.493677 | 8.1:-31832957 | None:intergenic |
| AATGTGGAATTAGGTGTGCC+TGG | 0.493922 | 8.1:+31834517 | MS.gene44222:CDS |
| TATCAAGGGATTCTTGTGCT+TGG | 0.496201 | 8.1:-31832942 | None:intergenic |
| TACATTATCTTTGAGTCCAA+AGG | 0.496791 | 8.1:+31834732 | MS.gene44222:CDS |
| TAGACAAAGCGCACGGCGAT+AGG | 0.501182 | 8.1:-31833915 | None:intergenic |
| GTGTGAATGTTATCCTTACA+AGG | 0.508378 | 8.1:-31834205 | None:intergenic |
| ACATAGGGAGTATCACCAAC+AGG | 0.513999 | 8.1:-31832612 | None:intergenic |
| ACAAGGTCTGGAAATGCTGC+AGG | 0.523586 | 8.1:+31834457 | MS.gene44222:CDS |
| TCAGTTGGTGGATAAGGATC+CGG | 0.533131 | 8.1:+31832771 | MS.gene44222:intron |
| TAATGAAGGGAAACTTAGGA+TGG | 0.537638 | 8.1:+31833852 | MS.gene44222:intron |
| TGAACAAGGTGCTGATTTGG+AGG | 0.544098 | 8.1:-31832526 | None:intergenic |
| CTGAGAGACTTAAGAGAACA+AGG | 0.544434 | 8.1:+31834440 | MS.gene44222:CDS |
| GTATTTAATCCAACAAGGGT+TGG | 0.547709 | 8.1:+31833365 | MS.gene44222:CDS |
| GAGATGTGGAATGCTCCTCC+AGG | 0.548444 | 8.1:+31832495 | MS.gene44222:CDS |
| ACAAAGACTGCTAGATCTCA+AGG | 0.550806 | 8.1:+31833405 | MS.gene44222:CDS |
| ATGTTATCCTTACAAGGCTG+AGG | 0.558507 | 8.1:-31834199 | None:intergenic |
| TATTCTCTTGGATCTATACA+AGG | 0.569966 | 8.1:+31832966 | MS.gene44222:CDS |
| CAACAATGATGCAAGAGATG+TGG | 0.570388 | 8.1:+31832481 | None:intergenic |
| ATGACCAAATAGCTCTATTG+AGG | 0.570773 | 8.1:+31833334 | MS.gene44222:CDS |
| CCAATAAAATTGACAAGAGG+AGG | 0.572218 | 8.1:+31834689 | MS.gene44222:CDS |
| GTCAAACCTGCAGTTACAGA+TGG | 0.578477 | 8.1:+31834025 | MS.gene44222:CDS |
| GGCATTTGTTTGATGAAACA+AGG | 0.580903 | 8.1:+31833968 | MS.gene44222:CDS |
| ATCCAAGAGAATATTATCAA+GGG | 0.583006 | 8.1:-31832956 | None:intergenic |
| GATAAATGCGGGAGATAGAG+TGG | 0.583477 | 8.1:+31832822 | MS.gene44222:CDS |
| TGCTGCAGGATTGCTGAGAG+TGG | 0.583575 | 8.1:+31834471 | MS.gene44222:CDS |
| TGATGAACAGAGGAGTGGAT+AGG | 0.595684 | 8.1:+31834122 | MS.gene44222:CDS |
| ATCACTCATAAGGTTCCTGT+TGG | 0.598329 | 8.1:+31832597 | MS.gene44222:CDS |
| GCTCCAATAAAATTGACAAG+AGG | 0.600273 | 8.1:+31834686 | MS.gene44222:CDS |
| TTTATCGCCGCCCAAAACAA+CGG | 0.610991 | 8.1:-31832805 | None:intergenic |
| TTTGAACACAGAGATGTGGT+AGG | 0.612406 | 8.1:+31833307 | MS.gene44222:intron |
| AATGAAGGGAAACTTAGGAT+GGG | 0.612702 | 8.1:+31833853 | MS.gene44222:intron |
| AAGCTGTATTTAATCCAACA+AGG | 0.617413 | 8.1:+31833360 | MS.gene44222:CDS |
| GAACAGCAACAAGGTGAATG+TGG | 0.619368 | 8.1:+31834501 | MS.gene44222:CDS |
| CGAAATGATGAACAGAGGAG+TGG | 0.635990 | 8.1:+31834117 | MS.gene44222:CDS |
| ATGTGGAATTAGGTGTGCCT+GGG | 0.644724 | 8.1:+31834518 | MS.gene44222:CDS |
| CAAAGACTGCTAGATCTCAA+GGG | 0.647976 | 8.1:+31833406 | MS.gene44222:CDS |
| AGCTGTATTTAATCCAACAA+GGG | 0.648583 | 8.1:+31833361 | MS.gene44222:CDS |
| TGCCTGGGAACAAAGCAAGA+AGG | 0.654997 | 8.1:+31834533 | MS.gene44222:CDS |
| TTAAGCGAGTTGTTCACCAA+AGG | 0.657800 | 8.1:-31834349 | None:intergenic |
| GAACAAGGTGCTGATTTGGA+GGG | 0.661705 | 8.1:-31832525 | None:intergenic |
| GAAGAAGTTTCAAGTCTCAG+TGG | 0.665599 | 8.1:+31833428 | MS.gene44222:CDS |
| GAGTCCGAAATGATGAACAG+AGG | 0.679232 | 8.1:+31834112 | MS.gene44222:CDS |
| GCTTTCGCTGCATAAAATGG+CGG | 0.679659 | 8.1:-31834382 | None:intergenic |
| GCAGTTACAGATGGACCAAG+AGG | 0.685614 | 8.1:+31834034 | MS.gene44222:CDS |
| TTGGAGGGTCTGAAACCTGG+AGG | 0.693634 | 8.1:-31832510 | None:intergenic |
| CTGGAGCTAGACAAAGCGCA+CGG | 0.693761 | 8.1:-31833922 | None:intergenic |
| GGATGATGTGAACAGCAACA+AGG | 0.698794 | 8.1:+31834492 | MS.gene44222:CDS |
| CGAGTTCTGGAAACACCAAG+AGG | 0.701607 | 8.1:-31832558 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGATTTTTTTAACAAAA+TGG | - | chr8.1:31833793-31833812 | None:intergenic | 10.0% |
| !!! | AATGTAATTTTATAATTTGT+AGG | + | chr8.1:31833187-31833206 | MS.gene44222:intron | 10.0% |
| !!! | ATGTAATTTTATAATTTGTA+GGG | + | chr8.1:31833188-31833207 | MS.gene44222:intron | 10.0% |
| !!! | TATAAAATTACATTCTTTTT+GGG | - | chr8.1:31833181-31833200 | None:intergenic | 10.0% |
| !!! | TTATAAAATTACATTCTTTT+TGG | - | chr8.1:31833182-31833201 | None:intergenic | 10.0% |
| !!! | TTGTTAAAAAAATCATTTTT+AGG | + | chr8.1:31833795-31833814 | MS.gene44222:intron | 10.0% |
| !! | ATATAAATAACTACCATATA+GGG | - | chr8.1:31833071-31833090 | None:intergenic | 15.0% |
| !!! | ATTTTAACGTTTTATCTAAA+TGG | + | chr8.1:31832730-31832749 | MS.gene44222:intron | 15.0% |
| !!! | TGTAATTTTATAATTTGTAG+GGG | + | chr8.1:31833189-31833208 | MS.gene44222:intron | 15.0% |
| !!! | TTTTAACGTTTTATCTAAAT+GGG | + | chr8.1:31832731-31832750 | MS.gene44222:intron | 15.0% |
| !!! | TTTTGTTTTTGTTTTTTACA+AGG | + | chr8.1:31832684-31832703 | MS.gene44222:intron | 15.0% |
| !! | AAAAAAAATCCAAAACAAAC+CGG | - | chr8.1:31833695-31833714 | None:intergenic | 20.0% |
| !! | CATATAAATAACTACCATAT+AGG | - | chr8.1:31833072-31833091 | None:intergenic | 20.0% |
| !! | CTATATGGTAGTTATTTATA+TGG | + | chr8.1:31833070-31833089 | MS.gene44222:intron | 20.0% |
| !!! | AAAAGTCAAATACTCTTTTA+AGG | - | chr8.1:31833628-31833647 | None:intergenic | 20.0% |
| !!! | TTGAAATCTTTAAAGAGTAT+GGG | + | chr8.1:31833669-31833688 | MS.gene44222:intron | 20.0% |
| !!! | TTTGAAATCTTTAAAGAGTA+TGG | + | chr8.1:31833668-31833687 | MS.gene44222:intron | 20.0% |
| ! | AATGTGCACTAAACAAATAT+TGG | + | chr8.1:31833218-31833237 | MS.gene44222:intron | 25.0% |
| ! | ACAACAATTCAAGATGAATT+TGG | + | chr8.1:31834256-31834275 | MS.gene44222:CDS | 25.0% |
| ! | ATCCAAGAGAATATTATCAA+GGG | - | chr8.1:31832959-31832978 | None:intergenic | 25.0% |
| ! | ATCTTGAATTTATCCCTATA+TGG | + | chr8.1:31833055-31833074 | MS.gene44222:intron | 25.0% |
| !! | AATCATTACCTGAACATTTT+TGG | - | chr8.1:31832643-31832662 | None:intergenic | 25.0% |
| !! | ATTTTTCACTATGTTGGTAT+TGG | - | chr8.1:31834299-31834318 | None:intergenic | 25.0% |
| !! | TGTGTAATTTTTCACTATGT+TGG | - | chr8.1:31834305-31834324 | None:intergenic | 25.0% |
| !! | TTTTCTTACCAATAATCTAG+TGG | - | chr8.1:31833463-31833482 | None:intergenic | 25.0% |
| !!! | GAACTTTGTTGTTTAATGAA+GGG | + | chr8.1:31833839-31833858 | MS.gene44222:intron | 25.0% |
| !!! | GTTTTGATTTTATGTTCAGT+TGG | + | chr8.1:31832756-31832775 | MS.gene44222:intron | 25.0% |
| !!! | TGAACTTTGTTGTTTAATGA+AGG | + | chr8.1:31833838-31833857 | MS.gene44222:intron | 25.0% |
| AACAACAAGATGTGCAATTT+AGG | + | chr8.1:31833947-31833966 | MS.gene44222:CDS | 30.0% | |
| AAGCTGTATTTAATCCAACA+AGG | + | chr8.1:31833360-31833379 | MS.gene44222:CDS | 30.0% | |
| ACAAAACAAGTTTACTCCTT+TGG | + | chr8.1:31834333-31834352 | MS.gene44222:CDS | 30.0% | |
| AGCTGTATTTAATCCAACAA+GGG | + | chr8.1:31833361-31833380 | MS.gene44222:CDS | 30.0% | |
| ATCATTTCACATCACTCATA+AGG | + | chr8.1:31832587-31832606 | MS.gene44222:CDS | 30.0% | |
| GATCCAAGAGAATATTATCA+AGG | - | chr8.1:31832960-31832979 | None:intergenic | 30.0% | |
| TACATTATCTTTGAGTCCAA+AGG | + | chr8.1:31834732-31834751 | MS.gene44222:CDS | 30.0% | |
| TATTCTCTTGGATCTATACA+AGG | + | chr8.1:31832966-31832985 | MS.gene44222:CDS | 30.0% | |
| TGTTATGAAGCAACAGAATA+GGG | + | chr8.1:31832870-31832889 | MS.gene44222:CDS | 30.0% | |
| TGTTTAATGAAGGGAAACTT+AGG | + | chr8.1:31833848-31833867 | MS.gene44222:intron | 30.0% | |
| TTGTTATGAAGCAACAGAAT+AGG | + | chr8.1:31832869-31832888 | MS.gene44222:CDS | 30.0% | |
| ! | AGGTAATGATTTTAAGCTTC+TGG | + | chr8.1:31832652-31832671 | MS.gene44222:intron | 30.0% |
| ! | ATCCCTTGATAATATTCTCT+TGG | + | chr8.1:31832954-31832973 | MS.gene44222:CDS | 30.0% |
| ! | GGTAATGATTTTAAGCTTCT+GGG | + | chr8.1:31832653-31832672 | MS.gene44222:intron | 30.0% |
| ! | TTGATTTTATGTTCAGTTGG+TGG | + | chr8.1:31832759-31832778 | MS.gene44222:intron | 30.0% |
| !! | ATTTTATAATTTGTAGGGGC+AGG | + | chr8.1:31833193-31833212 | MS.gene44222:intron | 30.0% |
| !!! | AAAGGAGTAAACTTGTTTTG+TGG | - | chr8.1:31834334-31834353 | None:intergenic | 30.0% |
| !!! | AACATTTTTGGCTCTAACAT+AGG | - | chr8.1:31832631-31832650 | None:intergenic | 30.0% |
| !!! | ACATTTTTGGCTCTAACATA+GGG | - | chr8.1:31832630-31832649 | None:intergenic | 30.0% |
| AAATGATTCAGAACGAGTTC+TGG | - | chr8.1:31832574-31832593 | None:intergenic | 35.0% | |
| AACAAGGTGAATGTGGAATT+AGG | + | chr8.1:31834508-31834527 | MS.gene44222:CDS | 35.0% | |
| AATGAAGGGAAACTTAGGAT+GGG | + | chr8.1:31833853-31833872 | MS.gene44222:intron | 35.0% | |
| CCAATAAAATTGACAAGAGG+AGG | + | chr8.1:31834689-31834708 | MS.gene44222:CDS | 35.0% | |
| GCTCCAATAAAATTGACAAG+AGG | + | chr8.1:31834686-31834705 | MS.gene44222:CDS | 35.0% | |
| GGCATTTGTTTGATGAAACA+AGG | + | chr8.1:31833968-31833987 | MS.gene44222:CDS | 35.0% | |
| GTATTTAATCCAACAAGGGT+TGG | + | chr8.1:31833365-31833384 | MS.gene44222:CDS | 35.0% | |
| GTGTGAATGTTATCCTTACA+AGG | - | chr8.1:31834208-31834227 | None:intergenic | 35.0% | |
| GTTGTTGATGTTGTTCTGAT+TGG | - | chr8.1:31834241-31834260 | None:intergenic | 35.0% | |
| TAATGAAGGGAAACTTAGGA+TGG | + | chr8.1:31833852-31833871 | MS.gene44222:intron | 35.0% | |
| TCTTCAAAGTCCTTAGTATC+AGG | - | chr8.1:31834595-31834614 | None:intergenic | 35.0% | |
| TGTTAGAGCCAAAAATGTTC+AGG | + | chr8.1:31832632-31832651 | MS.gene44222:CDS | 35.0% | |
| ! | AATCTTTAAAGAGTATGGGC+CGG | + | chr8.1:31833673-31833692 | MS.gene44222:intron | 35.0% |
| ! | AATGAAAATGCTGCTACTTC+TGG | + | chr8.1:31834658-31834677 | MS.gene44222:CDS | 35.0% |
| ! | ATGAAAATGCTGCTACTTCT+GGG | + | chr8.1:31834659-31834678 | MS.gene44222:CDS | 35.0% |
| ! | ATGACCAAATAGCTCTATTG+AGG | + | chr8.1:31833334-31833353 | MS.gene44222:CDS | 35.0% |
| ! | CCTCCTCTTGTCAATTTTAT+TGG | - | chr8.1:31834692-31834711 | None:intergenic | 35.0% |
| ! | TGATTTTGAACACAGAGATG+TGG | + | chr8.1:31833303-31833322 | MS.gene44222:intron | 35.0% |
| ! | TTCTTGGTTCTTCATCAATC+TGG | + | chr8.1:31834173-31834192 | MS.gene44222:CDS | 35.0% |
| !! | GGATAGTGCTTTGAAAGATA+TGG | + | chr8.1:31832843-31832862 | MS.gene44222:CDS | 35.0% |
| !! | TGATTTGTTGCCTGATACTA+AGG | + | chr8.1:31834582-31834601 | MS.gene44222:CDS | 35.0% |
| !! | TTATGTTCAGTTGGTGGATA+AGG | + | chr8.1:31832765-31832784 | MS.gene44222:intron | 35.0% |
| !!! | AGACTCTTTGAAGCTTTTCT+TGG | + | chr8.1:31834157-31834176 | MS.gene44222:CDS | 35.0% |
| AATTGACAAGAGGAGGCTTA+AGG | + | chr8.1:31834696-31834715 | MS.gene44222:CDS | 40.0% | |
| ACAAAGACTGCTAGATCTCA+AGG | + | chr8.1:31833405-31833424 | MS.gene44222:CDS | 40.0% | |
| ACAGGAAGCCACTAGATTAT+TGG | + | chr8.1:31833452-31833471 | MS.gene44222:CDS | 40.0% | |
| AGACTTAAGAGAACAAGGTC+TGG | + | chr8.1:31834445-31834464 | MS.gene44222:CDS | 40.0% | |
| ATCACTCATAAGGTTCCTGT+TGG | + | chr8.1:31832597-31832616 | MS.gene44222:CDS | 40.0% | |
| ATGTTATCCTTACAAGGCTG+AGG | - | chr8.1:31834202-31834221 | None:intergenic | 40.0% | |
| CAAAGACTGCTAGATCTCAA+GGG | + | chr8.1:31833406-31833425 | MS.gene44222:CDS | 40.0% | |
| CACTCCTCTGTTCATCATTT+CGG | - | chr8.1:31834119-31834138 | None:intergenic | 40.0% | |
| CTGAGAGACTTAAGAGAACA+AGG | + | chr8.1:31834440-31834459 | MS.gene44222:CDS | 40.0% | |
| GATGCTTTCGCTGCATAAAA+TGG | - | chr8.1:31834388-31834407 | None:intergenic | 40.0% | |
| GTTGATGTTGTTCTGATTGG+TGG | - | chr8.1:31834238-31834257 | None:intergenic | 40.0% | |
| TAACTGCAGGTTTGACTCTA+TGG | - | chr8.1:31834021-31834040 | None:intergenic | 40.0% | |
| TATCAAGGGATTCTTGTGCT+TGG | - | chr8.1:31832945-31832964 | None:intergenic | 40.0% | |
| TGTGCCTCAATAGAGCTATT+TGG | - | chr8.1:31833341-31833360 | None:intergenic | 40.0% | |
| TGTGTTGTACTATGCACCAT+TGG | + | chr8.1:31833108-31833127 | MS.gene44222:intron | 40.0% | |
| TTAAGCGAGTTGTTCACCAA+AGG | - | chr8.1:31834352-31834371 | None:intergenic | 40.0% | |
| TTTGAACACAGAGATGTGGT+AGG | + | chr8.1:31833307-31833326 | MS.gene44222:intron | 40.0% | |
| ! | GAAGAAGTTTCAAGTCTCAG+TGG | + | chr8.1:31833428-31833447 | MS.gene44222:CDS | 40.0% |
| !! | CATTTGCTGTGCTCTTTCAT+AGG | - | chr8.1:31834080-31834099 | None:intergenic | 40.0% |
| !! | GGTAAGAAAAGCATCACACA+TGG | + | chr8.1:31833473-31833492 | MS.gene44222:intron | 40.0% |
| !! | TGCTATTCTTGCTGCTGTTT+TGG | + | chr8.1:31834615-31834634 | MS.gene44222:CDS | 40.0% |
| !! | TTGCACATCTTGTTGTTGTC+TGG | - | chr8.1:31833944-31833963 | None:intergenic | 40.0% |
| !!! | CTATTCTTGCTGCTGTTTTG+GGG | + | chr8.1:31834617-31834636 | MS.gene44222:CDS | 40.0% |
| !!! | GCTATTCTTGCTGCTGTTTT+GGG | + | chr8.1:31834616-31834635 | MS.gene44222:CDS | 40.0% |
| AATGTGGAATTAGGTGTGCC+TGG | + | chr8.1:31834517-31834536 | MS.gene44222:CDS | 45.0% | |
| AGATGAGAATCTGAGCCTCT+TGG | - | chr8.1:31834052-31834071 | None:intergenic | 45.0% | |
| ATGTGGAATTAGGTGTGCCT+GGG | + | chr8.1:31834518-31834537 | MS.gene44222:CDS | 45.0% | |
| CATTGAAAGCCAACCCTTGT+TGG | - | chr8.1:31833377-31833396 | None:intergenic | 45.0% | |
| CGAAATGATGAACAGAGGAG+TGG | + | chr8.1:31834117-31834136 | MS.gene44222:CDS | 45.0% | |
| GAACAGCAACAAGGTGAATG+TGG | + | chr8.1:31834501-31834520 | MS.gene44222:CDS | 45.0% | |
| GAGTCCGAAATGATGAACAG+AGG | + | chr8.1:31834112-31834131 | MS.gene44222:CDS | 45.0% | |
| GATAAATGCGGGAGATAGAG+TGG | + | chr8.1:31832822-31832841 | MS.gene44222:CDS | 45.0% | |
| GCACGATACACTTGATCCAA+TGG | - | chr8.1:31833127-31833146 | None:intergenic | 45.0% | |
| GCTTTCGCTGCATAAAATGG+CGG | - | chr8.1:31834385-31834404 | None:intergenic | 45.0% | |
| GGATGATGTGAACAGCAACA+AGG | + | chr8.1:31834492-31834511 | MS.gene44222:CDS | 45.0% | |
| GTCAAACCTGCAGTTACAGA+TGG | + | chr8.1:31834025-31834044 | MS.gene44222:CDS | 45.0% | |
| TGATGAACAGAGGAGTGGAT+AGG | + | chr8.1:31834122-31834141 | MS.gene44222:CDS | 45.0% | |
| TGTTCACCTGCAAAACCTCT+TGG | + | chr8.1:31832543-31832562 | MS.gene44222:CDS | 45.0% | |
| TTTATCGCCGCCCAAAACAA+CGG | - | chr8.1:31832808-31832827 | None:intergenic | 45.0% | |
| ! | AGAGAGCGATTCCGTTGTTT+TGG | + | chr8.1:31832794-31832813 | MS.gene44222:CDS | 45.0% |
| ! | AGAGGTTTTGCAGGTGAACA+AGG | - | chr8.1:31832543-31832562 | None:intergenic | 45.0% |
| ! | GAAACACCAAGAGGTTTTGC+AGG | - | chr8.1:31832552-31832571 | None:intergenic | 45.0% |
| ! | GTTTCAAGTCTCAGTGGAAC+AGG | + | chr8.1:31833434-31833453 | MS.gene44222:CDS | 45.0% |
| !! | ACATAGGGAGTATCACCAAC+AGG | - | chr8.1:31832615-31832634 | None:intergenic | 45.0% |
| !! | AGGTGAACAAGGTGCTGATT+TGG | - | chr8.1:31832532-31832551 | None:intergenic | 45.0% |
| !! | CAACAAGGGTTGGCTTTCAA+TGG | + | chr8.1:31833375-31833394 | MS.gene44222:CDS | 45.0% |
| !! | GAACAAGGTGCTGATTTGGA+GGG | - | chr8.1:31832528-31832547 | None:intergenic | 45.0% |
| !! | GAGAGCGATTCCGTTGTTTT+GGG | + | chr8.1:31832795-31832814 | MS.gene44222:CDS | 45.0% |
| !! | TCAGTTGGTGGATAAGGATC+CGG | + | chr8.1:31832771-31832790 | MS.gene44222:intron | 45.0% |
| !! | TGAACAAGGTGCTGATTTGG+AGG | - | chr8.1:31832529-31832548 | None:intergenic | 45.0% |
| !! | TGCAGCGAAAGCATCTTTCA+AGG | + | chr8.1:31834393-31834412 | MS.gene44222:CDS | 45.0% |
| !! | TATAATTTAATCATAAAAAT+TGG | - | chr8.1:31833006-31833025 | None:intergenic | 5.0% |
| AACAACGGAATCGCTCTCTC+CGG | - | chr8.1:31832793-31832812 | None:intergenic | 50.0% | |
| ACAAGGTCTGGAAATGCTGC+AGG | + | chr8.1:31834457-31834476 | MS.gene44222:CDS | 50.0% | |
| CTTGGTCCATCTGTAACTGC+AGG | - | chr8.1:31834034-31834053 | None:intergenic | 50.0% | |
| GCAGTTACAGATGGACCAAG+AGG | + | chr8.1:31834034-31834053 | MS.gene44222:CDS | 50.0% | |
| TGCCTGGGAACAAAGCAAGA+AGG | + | chr8.1:31834533-31834552 | MS.gene44222:CDS | 50.0% | |
| ! | AGCCTTCTTGCTTTGTTCCC+AGG | - | chr8.1:31834538-31834557 | None:intergenic | 50.0% |
| ! | GATTTGGAGGGTCTGAAACC+TGG | - | chr8.1:31832516-31832535 | None:intergenic | 50.0% |
| ! | TTTTGGGCGGCGATAAATGC+GGG | + | chr8.1:31832811-31832830 | MS.gene44222:CDS | 50.0% |
| !! | CGAGTTCTGGAAACACCAAG+AGG | - | chr8.1:31832561-31832580 | None:intergenic | 50.0% |
| !! | GTTTTGGGCGGCGATAAATG+CGG | + | chr8.1:31832810-31832829 | MS.gene44222:CDS | 50.0% |
| !!! | AGCGATTCCGTTGTTTTGGG+CGG | + | chr8.1:31832798-31832817 | MS.gene44222:CDS | 50.0% |
| !!! | GAGTATGGGCCGGTTTGTTT+TGG | + | chr8.1:31833683-31833702 | MS.gene44222:intron | 50.0% |
| CTGGAGCTAGACAAAGCGCA+CGG | - | chr8.1:31833925-31833944 | None:intergenic | 55.0% | |
| GAGATGTGGAATGCTCCTCC+AGG | + | chr8.1:31832495-31832514 | MS.gene44222:CDS | 55.0% | |
| TAGACAAAGCGCACGGCGAT+AGG | - | chr8.1:31833918-31833937 | None:intergenic | 55.0% | |
| TGCTGCAGGATTGCTGAGAG+TGG | + | chr8.1:31834471-31834490 | MS.gene44222:CDS | 55.0% | |
| ! | CTGGCAACCTCAGCCTTGTA+AGG | + | chr8.1:31834192-31834211 | MS.gene44222:CDS | 55.0% |
| ! | TTGGAGGGTCTGAAACCTGG+AGG | - | chr8.1:31832513-31832532 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 31832486 | 31834759 | 31832486 | ID=MS.gene44222 |
| chr8.1 | mRNA | 31832486 | 31834759 | 31832486 | ID=MS.gene44222.t1;Parent=MS.gene44222 |
| chr8.1 | exon | 31832486 | 31832653 | 31832486 | ID=MS.gene44222.t1.exon1;Parent=MS.gene44222.t1 |
| chr8.1 | CDS | 31832486 | 31832653 | 31832486 | ID=cds.MS.gene44222.t1;Parent=MS.gene44222.t1 |
| chr8.1 | exon | 31832775 | 31832987 | 31832775 | ID=MS.gene44222.t1.exon2;Parent=MS.gene44222.t1 |
| chr8.1 | CDS | 31832775 | 31832987 | 31832775 | ID=cds.MS.gene44222.t1;Parent=MS.gene44222.t1 |
| chr8.1 | exon | 31833318 | 31833473 | 31833318 | ID=MS.gene44222.t1.exon3;Parent=MS.gene44222.t1 |
| chr8.1 | CDS | 31833318 | 31833473 | 31833318 | ID=cds.MS.gene44222.t1;Parent=MS.gene44222.t1 |
| chr8.1 | exon | 31833860 | 31834759 | 31833860 | ID=MS.gene44222.t1.exon4;Parent=MS.gene44222.t1 |
| chr8.1 | CDS | 31833860 | 31834759 | 31833860 | ID=cds.MS.gene44222.t1;Parent=MS.gene44222.t1 |
| Gene Sequence |
| Protein sequence |
