Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45155.t1 | XP_003613416.2 | 98.2 | 333 | 6 | 0 | 1 | 333 | 36 | 368 | 1.70E-189 | 671.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45155.t1 | O04529 | 57.5 | 313 | 120 | 3 | 5 | 304 | 25 | 337 | 5.0e-102 | 372.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45155.t1 | G7K5L1 | 98.2 | 333 | 6 | 0 | 1 | 333 | 36 | 368 | 1.2e-189 | 671.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05015 | MS.gene45155 | 0.802507 | 5.43E-49 | -1.69E-46 |
| MS.gene050363 | MS.gene45155 | 0.827449 | 1.55E-54 | -1.69E-46 |
| MS.gene050381 | MS.gene45155 | 0.837924 | 3.90E-57 | -1.69E-46 |
| MS.gene050883 | MS.gene45155 | 0.831301 | 1.80E-55 | -1.69E-46 |
| MS.gene051044 | MS.gene45155 | 0.832825 | 7.58E-56 | -1.69E-46 |
| MS.gene051127 | MS.gene45155 | 0.810315 | 1.23E-50 | -1.69E-46 |
| MS.gene051946 | MS.gene45155 | 0.815447 | 9.20E-52 | -1.69E-46 |
| MS.gene052089 | MS.gene45155 | 0.804856 | 1.77E-49 | -1.69E-46 |
| MS.gene052566 | MS.gene45155 | 0.817958 | 2.52E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene45155 | 0.807579 | 4.72E-50 | -1.69E-46 |
| MS.gene053561 | MS.gene45155 | 0.801652 | 8.14E-49 | -1.69E-46 |
| MS.gene053826 | MS.gene45155 | 0.806415 | 8.32E-50 | -1.69E-46 |
| MS.gene055549 | MS.gene45155 | 0.845004 | 5.32E-59 | -1.69E-46 |
| MS.gene055550 | MS.gene45155 | 0.845149 | 4.86E-59 | -1.69E-46 |
| MS.gene055551 | MS.gene45155 | 0.816709 | 4.81E-52 | -1.69E-46 |
| MS.gene055942 | MS.gene45155 | 0.810031 | 1.41E-50 | -1.69E-46 |
| MS.gene056310 | MS.gene45155 | 0.827922 | 1.20E-54 | -1.69E-46 |
| MS.gene056311 | MS.gene45155 | 0.839591 | 1.45E-57 | -1.69E-46 |
| MS.gene056313 | MS.gene45155 | 0.81384 | 2.09E-51 | -1.69E-46 |
| MS.gene056408 | MS.gene45155 | 0.838815 | 2.30E-57 | -1.69E-46 |
| MS.gene057014 | MS.gene45155 | 0.851112 | 1.10E-60 | -1.69E-46 |
| MS.gene058099 | MS.gene45155 | 0.802332 | 5.90E-49 | -1.69E-46 |
| MS.gene058268 | MS.gene45155 | 0.805378 | 1.37E-49 | -1.69E-46 |
| MS.gene058493 | MS.gene45155 | 0.833897 | 4.10E-56 | -1.69E-46 |
| MS.gene058494 | MS.gene45155 | 0.812117 | 4.98E-51 | -1.69E-46 |
| MS.gene058628 | MS.gene45155 | 0.882348 | 1.12E-70 | -1.69E-46 |
| MS.gene058629 | MS.gene45155 | 0.862024 | 6.79E-64 | -1.69E-46 |
| MS.gene058630 | MS.gene45155 | 0.885976 | 5.11E-72 | -1.69E-46 |
| MS.gene059690 | MS.gene45155 | 0.848032 | 7.93E-60 | -1.69E-46 |
| MS.gene059691 | MS.gene45155 | 0.809994 | 1.44E-50 | -1.69E-46 |
| MS.gene059694 | MS.gene45155 | 0.850519 | 1.61E-60 | -1.69E-46 |
| MS.gene059697 | MS.gene45155 | 0.841715 | 4.02E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45155.t1 | MTR_5g036410 | 98.198 | 333 | 6 | 0 | 1 | 333 | 36 | 368 | 0.0 | 678 |
| MS.gene45155.t1 | MTR_8g062770 | 64.984 | 317 | 105 | 1 | 10 | 320 | 39 | 355 | 5.67e-150 | 426 |
| MS.gene45155.t1 | MTR_5g012680 | 47.879 | 330 | 146 | 7 | 12 | 333 | 43 | 354 | 5.33e-100 | 299 |
| MS.gene45155.t1 | MTR_8g005900 | 45.603 | 307 | 153 | 5 | 19 | 320 | 39 | 336 | 1.12e-89 | 272 |
| MS.gene45155.t1 | MTR_5g036080 | 43.007 | 286 | 136 | 10 | 14 | 293 | 57 | 321 | 6.82e-63 | 202 |
| MS.gene45155.t1 | MTR_6g008480 | 35.786 | 299 | 155 | 5 | 18 | 290 | 42 | 329 | 8.97e-58 | 190 |
| MS.gene45155.t1 | MTR_5g036087 | 35.783 | 313 | 173 | 9 | 27 | 333 | 58 | 348 | 4.37e-46 | 160 |
| MS.gene45155.t1 | MTR_5g036083 | 37.453 | 267 | 133 | 6 | 31 | 295 | 44 | 278 | 3.39e-45 | 157 |
| MS.gene45155.t1 | MTR_5g036093 | 34.202 | 307 | 167 | 9 | 33 | 333 | 35 | 312 | 5.55e-42 | 148 |
| MS.gene45155.t1 | MTR_5g036290 | 33.871 | 310 | 172 | 9 | 29 | 333 | 87 | 368 | 4.26e-39 | 142 |
| MS.gene45155.t1 | MTR_5g036270 | 33.548 | 310 | 160 | 11 | 31 | 295 | 5 | 313 | 1.01e-37 | 137 |
| MS.gene45155.t1 | MTR_5g036360 | 34.066 | 273 | 151 | 7 | 24 | 292 | 74 | 321 | 8.23e-37 | 135 |
| MS.gene45155.t1 | MTR_5g036310 | 29.206 | 315 | 147 | 12 | 24 | 333 | 66 | 309 | 1.01e-23 | 99.4 |
| MS.gene45155.t1 | MTR_5g036365 | 28.972 | 214 | 115 | 7 | 125 | 333 | 36 | 217 | 6.63e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45155.t1 | AT1G70170 | 57.508 | 313 | 120 | 3 | 5 | 304 | 25 | 337 | 6.24e-129 | 373 |
| MS.gene45155.t1 | AT1G24140 | 53.495 | 329 | 142 | 4 | 1 | 318 | 30 | 358 | 7.31e-124 | 360 |
| MS.gene45155.t1 | AT1G59970 | 53.968 | 315 | 134 | 4 | 1 | 312 | 29 | 335 | 3.21e-114 | 335 |
| MS.gene45155.t1 | AT4G16640 | 45.963 | 322 | 153 | 6 | 14 | 331 | 52 | 356 | 1.92e-88 | 270 |
| MS.gene45155.t1 | AT2G45040 | 48.529 | 272 | 115 | 6 | 32 | 297 | 50 | 302 | 3.75e-82 | 253 |
Find 81 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCATCAGATATTAAATT+AGG | 0.157039 | 5.1:+26876704 | MS.gene45155:CDS |
| CATGAAATAGGTCATTTATT+AGG | 0.161352 | 5.1:+26876908 | MS.gene45155:CDS |
| GAAGGGATTCAAATGCTTTA+TGG | 0.163456 | 5.1:+26877019 | MS.gene45155:CDS |
| GTAGTTGTCCCTGTAAAATT+AGG | 0.201015 | 5.1:-26877049 | None:intergenic |
| TCCGGCCAGCGTGGCTGGCC+GGG | 0.262954 | 5.1:-26876548 | None:intergenic |
| ATGAAATAGGTCATTTATTA+GGG | 0.288245 | 5.1:+26876909 | MS.gene45155:CDS |
| TCTTTGTTGTTTCTTGGATT+TGG | 0.304297 | 5.1:+26877133 | MS.gene45155:CDS |
| GTTCATCAGATATTAAATTA+GGG | 0.315071 | 5.1:+26876705 | MS.gene45155:CDS |
| AAGGGATTCAAATGCTTTAT+GGG | 0.316052 | 5.1:+26877020 | MS.gene45155:CDS |
| TTCCCTCCGGCCAGCGTGGC+TGG | 0.317572 | 5.1:-26876553 | None:intergenic |
| CTCCGGCCAGCGTGGCTGGC+CGG | 0.323920 | 5.1:-26876549 | None:intergenic |
| AAATTTGAAGGTGGCGCGTT+GGG | 0.326354 | 5.1:-26876305 | None:intergenic |
| AGGGATAGAGAATCTAGTTT+TGG | 0.345074 | 5.1:+26877082 | MS.gene45155:CDS |
| ATAGGTCATTTATTAGGGTT+AGG | 0.349255 | 5.1:+26876914 | MS.gene45155:CDS |
| CCCCGGCCAGCCACGCTGGC+CGG | 0.363367 | 5.1:+26876547 | MS.gene45155:CDS |
| ATTTAGATAAAGCAGAAGAT+TGG | 0.364719 | 5.1:+26876819 | MS.gene45155:CDS |
| GGTTCGGACGGCGGATTCTA+AGG | 0.384424 | 5.1:-26876348 | None:intergenic |
| TCTTCCCCGGCCAGCCACGC+TGG | 0.384836 | 5.1:+26876543 | MS.gene45155:CDS |
| TAGGATCGAAAGCGTAGGTT+AGG | 0.389588 | 5.1:-26876583 | None:intergenic |
| TCTGTTGTGGTTCATGAAAT+AGG | 0.392934 | 5.1:+26876896 | MS.gene45155:CDS |
| TAGTTGTCCCTGTAAAATTA+GGG | 0.403688 | 5.1:-26877048 | None:intergenic |
| CCGGCCAGCGTGGCTGGCCG+GGG | 0.411103 | 5.1:-26876547 | None:intergenic |
| GAAGCATTTGACGGAGTCCT+TGG | 0.426382 | 5.1:+26876755 | MS.gene45155:CDS |
| TTGTACCCATCCCACGCGCC+TGG | 0.434161 | 5.1:-26876200 | None:intergenic |
| TGTTGAGGTTGAAATTCTTT+TGG | 0.436136 | 5.1:-26876373 | None:intergenic |
| TTTAGATAAAGCAGAAGATT+GGG | 0.451565 | 5.1:+26876820 | MS.gene45155:CDS |
| GCAGAAGATTGGGTAGTTAA+CGG | 0.455900 | 5.1:+26876830 | MS.gene45155:CDS |
| TAGGTCATTTATTAGGGTTA+GGG | 0.476335 | 5.1:+26876915 | MS.gene45155:CDS |
| CGGCCAGCCACGCTGGCCGG+AGG | 0.478549 | 5.1:+26876550 | MS.gene45155:CDS |
| AACTTCACCGGCTGCAGCCG+CGG | 0.481967 | 5.1:+26876224 | MS.gene45155:CDS |
| CACCACCAGGCGCGTGGGAT+GGG | 0.482425 | 5.1:+26876195 | MS.gene45155:CDS |
| GTTTGCGAAAACTTGTTTCG+TGG | 0.484187 | 5.1:-26876624 | None:intergenic |
| AAGCATTTGACGGAGTCCTT+GGG | 0.485684 | 5.1:+26876756 | MS.gene45155:CDS |
| GGCCAGCCACGCTGGCCGGA+GGG | 0.491463 | 5.1:+26876551 | MS.gene45155:CDS |
| TTCGTTCTTGAACTTATCGT+AGG | 0.494239 | 5.1:-26876968 | None:intergenic |
| GTACATAATAGCCTCTTCAA+TGG | 0.498583 | 5.1:-26876945 | None:intergenic |
| AGGATCGAAAGCGTAGGTTA+GGG | 0.506081 | 5.1:-26876582 | None:intergenic |
| AAGTCATCGGTGAAATTTGA+AGG | 0.507768 | 5.1:-26876317 | None:intergenic |
| GTTAGGGTTTGTGTTCCCTC+CGG | 0.512103 | 5.1:-26876566 | None:intergenic |
| GCACCACCAGGCGCGTGGGA+TGG | 0.518271 | 5.1:+26876194 | MS.gene45155:CDS |
| TCGTTCTTGAACTTATCGTA+GGG | 0.525939 | 5.1:-26876967 | None:intergenic |
| GCACACTATTCATTCTTCCC+CGG | 0.533542 | 5.1:+26876530 | MS.gene45155:CDS |
| GGACAACTACTGCTACTTCG+AGG | 0.534224 | 5.1:+26877062 | MS.gene45155:CDS |
| TAAGGCCTCGTCGAAGTCAT+CGG | 0.537169 | 5.1:-26876330 | None:intergenic |
| CTTGTTTCGTGGCGTCGTCG+AGG | 0.538320 | 5.1:-26876613 | None:intergenic |
| CTTGAGAGTGATGATATTGA+AGG | 0.545826 | 5.1:+26877001 | MS.gene45155:CDS |
| CGTTGCATCGTCGAGTTCAC+CGG | 0.549154 | 5.1:-26876399 | None:intergenic |
| GGTACAACCTCCATGAACTC+TGG | 0.555277 | 5.1:+26876470 | MS.gene45155:CDS |
| CCACGCGCCTGGTGGTGCGT+TGG | 0.556501 | 5.1:-26876189 | None:intergenic |
| TGCAACAGTGTGGAAGTTTG+TGG | 0.558255 | 5.1:-26876510 | None:intergenic |
| AGGGCATTCTTCCATTGAAG+AGG | 0.560714 | 5.1:+26876934 | MS.gene45155:CDS |
| CGAGTTCACCGGTGATGTTG+AGG | 0.562539 | 5.1:-26876388 | None:intergenic |
| AATTTGAAGGTGGCGCGTTG+GGG | 0.563031 | 5.1:-26876304 | None:intergenic |
| AAATGTAATCTTCCGTCAGT+TGG | 0.563519 | 5.1:-26876800 | None:intergenic |
| CCAACGCACCACCAGGCGCG+TGG | 0.566983 | 5.1:+26876189 | MS.gene45155:CDS |
| GAAATTTGAAGGTGGCGCGT+TGG | 0.568484 | 5.1:-26876306 | None:intergenic |
| AATTCTACCAACGCACCACC+AGG | 0.571636 | 5.1:+26876182 | MS.gene45155:CDS |
| AATTTCAACCTCAACATCAC+CGG | 0.584106 | 5.1:+26876380 | MS.gene45155:CDS |
| TTGAGAGTGATGATATTGAA+GGG | 0.584160 | 5.1:+26877002 | MS.gene45155:CDS |
| GGTGACGGAGAAGCATTTGA+CGG | 0.584989 | 5.1:+26876746 | MS.gene45155:CDS |
| TACCCATCCCACGCGCCTGG+TGG | 0.585085 | 5.1:-26876197 | None:intergenic |
| GGTAGTTAACGGAGATGTAA+CGG | 0.586362 | 5.1:+26876841 | MS.gene45155:CDS |
| GACAACTACTGCTACTTCGA+GGG | 0.587368 | 5.1:+26877063 | MS.gene45155:CDS |
| TATAGTGGGGACCATGGTGA+CGG | 0.588206 | 5.1:+26876731 | MS.gene45155:CDS |
| TGTTGATTTAGAATCTGTTG+TGG | 0.605486 | 5.1:+26876883 | MS.gene45155:CDS |
| CGTTGGGGATATAGCCGAAG+TGG | 0.608198 | 5.1:-26876289 | None:intergenic |
| TGTGTTCCCTCCGGCCAGCG+TGG | 0.612378 | 5.1:-26876557 | None:intergenic |
| CAACGCACCACCAGGCGCGT+GGG | 0.616925 | 5.1:+26876190 | MS.gene45155:CDS |
| AGCCGCGGCAAAACTTATGA+CGG | 0.625110 | 5.1:+26876239 | MS.gene45155:CDS |
| GGTGCGTTGGTAGAATTCCA+TGG | 0.631316 | 5.1:-26876176 | None:intergenic |
| TACATCGTCAAGCCACGTTG+TGG | 0.633991 | 5.1:+26876428 | MS.gene45155:CDS |
| AAGCGTGTGCTAATGTCCCA+AGG | 0.645260 | 5.1:-26876772 | None:intergenic |
| CAAATGCTTCTCCGTCACCA+TGG | 0.647782 | 5.1:-26876742 | None:intergenic |
| TTCGCTAGGATCGAAAGCGT+AGG | 0.652309 | 5.1:-26876588 | None:intergenic |
| ATCCATCTTCAATGCCACCA+TGG | 0.654699 | 5.1:+26876159 | None:intergenic |
| GGTGTAGCTGATATCATCAA+CGG | 0.676861 | 5.1:+26876449 | MS.gene45155:CDS |
| TCATCGGTGAAATTTGAAGG+TGG | 0.680753 | 5.1:-26876314 | None:intergenic |
| ATGAATAGTGTGCAACAGTG+TGG | 0.693351 | 5.1:-26876520 | None:intergenic |
| TTTCACCGATGACTTCGACG+AGG | 0.776041 | 5.1:+26876325 | MS.gene45155:CDS |
| ATATCAGCTACACCACAACG+TGG | 0.791932 | 5.1:-26876440 | None:intergenic |
| GCGTTGGTAGAATTCCATGG+TGG | 0.806564 | 5.1:-26876173 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTCATCAGATATTAAATT+AGG | + | chr5.1:26876704-26876723 | MS.gene45155:CDS | 20.0% |
| !! | ATGAAATAGGTCATTTATTA+GGG | + | chr5.1:26876909-26876928 | MS.gene45155:CDS | 20.0% |
| !! | GTTCATCAGATATTAAATTA+GGG | + | chr5.1:26876705-26876724 | MS.gene45155:CDS | 20.0% |
| !!! | ATTAAATTAGGGTTTTATAG+TGG | + | chr5.1:26876716-26876735 | MS.gene45155:CDS | 20.0% |
| !!! | TTAAATTAGGGTTTTATAGT+GGG | + | chr5.1:26876717-26876736 | MS.gene45155:CDS | 20.0% |
| ! | ATTTAGATAAAGCAGAAGAT+TGG | + | chr5.1:26876819-26876838 | MS.gene45155:CDS | 25.0% |
| ! | CATGAAATAGGTCATTTATT+AGG | + | chr5.1:26876908-26876927 | MS.gene45155:CDS | 25.0% |
| ! | TTTAGATAAAGCAGAAGATT+GGG | + | chr5.1:26876820-26876839 | MS.gene45155:CDS | 25.0% |
| !!! | TAAATTAGGGTTTTATAGTG+GGG | + | chr5.1:26876718-26876737 | MS.gene45155:CDS | 25.0% |
| !!! | TTTTTGTCTTTGTTGTTTCT+TGG | + | chr5.1:26877127-26877146 | MS.gene45155:CDS | 25.0% |
| AAAAACTACTTCAACCACTT+CGG | + | chr5.1:26876275-26876294 | MS.gene45155:CDS | 30.0% | |
| AAGGGATTCAAATGCTTTAT+GGG | + | chr5.1:26877020-26877039 | MS.gene45155:CDS | 30.0% | |
| ATAGGTCATTTATTAGGGTT+AGG | + | chr5.1:26876914-26876933 | MS.gene45155:CDS | 30.0% | |
| TAGGTCATTTATTAGGGTTA+GGG | + | chr5.1:26876915-26876934 | MS.gene45155:CDS | 30.0% | |
| TAGTTGTCCCTGTAAAATTA+GGG | - | chr5.1:26877051-26877070 | None:intergenic | 30.0% | |
| TTGAGAGTGATGATATTGAA+GGG | + | chr5.1:26877002-26877021 | MS.gene45155:CDS | 30.0% | |
| ! | TGAAATTCTTTTGGTAGGTT+CGG | - | chr5.1:26876367-26876386 | None:intergenic | 30.0% |
| ! | TGTTGAGGTTGAAATTCTTT+TGG | - | chr5.1:26876376-26876395 | None:intergenic | 30.0% |
| !! | TCTTTGTTGTTTCTTGGATT+TGG | + | chr5.1:26877133-26877152 | MS.gene45155:CDS | 30.0% |
| !! | TGTTGATTTAGAATCTGTTG+TGG | + | chr5.1:26876883-26876902 | MS.gene45155:CDS | 30.0% |
| AAATGTAATCTTCCGTCAGT+TGG | - | chr5.1:26876803-26876822 | None:intergenic | 35.0% | |
| AAGTCATCGGTGAAATTTGA+AGG | - | chr5.1:26876320-26876339 | None:intergenic | 35.0% | |
| AATTTCAACCTCAACATCAC+CGG | + | chr5.1:26876380-26876399 | MS.gene45155:CDS | 35.0% | |
| CTTGAGAGTGATGATATTGA+AGG | + | chr5.1:26877001-26877020 | MS.gene45155:CDS | 35.0% | |
| GAAGGGATTCAAATGCTTTA+TGG | + | chr5.1:26877019-26877038 | MS.gene45155:CDS | 35.0% | |
| GTACATAATAGCCTCTTCAA+TGG | - | chr5.1:26876948-26876967 | None:intergenic | 35.0% | |
| GTAGTTGTCCCTGTAAAATT+AGG | - | chr5.1:26877052-26877071 | None:intergenic | 35.0% | |
| TCGTTCTTGAACTTATCGTA+GGG | - | chr5.1:26876970-26876989 | None:intergenic | 35.0% | |
| TCTGTTGTGGTTCATGAAAT+AGG | + | chr5.1:26876896-26876915 | MS.gene45155:CDS | 35.0% | |
| TTCGTTCTTGAACTTATCGT+AGG | - | chr5.1:26876971-26876990 | None:intergenic | 35.0% | |
| ! | GAGGTTGAAATTCTTTTGGT+AGG | - | chr5.1:26876372-26876391 | None:intergenic | 35.0% |
| ! | GGTCTAACCCTAATTTTACA+GGG | + | chr5.1:26877041-26877060 | MS.gene45155:CDS | 35.0% |
| ! | GTTGAATTTTCCAGAGTTCA+TGG | - | chr5.1:26876483-26876502 | None:intergenic | 35.0% |
| ! | TCGCAAACGCTTTTAATCAA+TGG | + | chr5.1:26876639-26876658 | MS.gene45155:CDS | 35.0% |
| !! | AGGGATAGAGAATCTAGTTT+TGG | + | chr5.1:26877082-26877101 | MS.gene45155:CDS | 35.0% |
| !!! | GATAGAGAATCTAGTTTTGG+TGG | + | chr5.1:26877085-26877104 | MS.gene45155:CDS | 35.0% |
| ATGAATAGTGTGCAACAGTG+TGG | - | chr5.1:26876523-26876542 | None:intergenic | 40.0% | |
| GATGGGTACAAAAACTTCAC+CGG | + | chr5.1:26876212-26876231 | MS.gene45155:CDS | 40.0% | |
| GCAGAAGATTGGGTAGTTAA+CGG | + | chr5.1:26876830-26876849 | MS.gene45155:CDS | 40.0% | |
| GGTAGTTAACGGAGATGTAA+CGG | + | chr5.1:26876841-26876860 | MS.gene45155:CDS | 40.0% | |
| GGTGTAGCTGATATCATCAA+CGG | + | chr5.1:26876449-26876468 | MS.gene45155:CDS | 40.0% | |
| TCATCGGTGAAATTTGAAGG+TGG | - | chr5.1:26876317-26876336 | None:intergenic | 40.0% | |
| ! | ATTCTTTTGGTAGGTTCGGA+CGG | - | chr5.1:26876363-26876382 | None:intergenic | 40.0% |
| ! | GAATTTTCCAGAGTTCATGG+AGG | - | chr5.1:26876480-26876499 | None:intergenic | 40.0% |
| ! | GGGTCTAACCCTAATTTTAC+AGG | + | chr5.1:26877040-26877059 | MS.gene45155:CDS | 40.0% |
| ! | GTTTGCGAAAACTTGTTTCG+TGG | - | chr5.1:26876627-26876646 | None:intergenic | 40.0% |
| !!! | CTAGTTTTGGTGGAAGACAT+GGG | + | chr5.1:26877095-26877114 | MS.gene45155:CDS | 40.0% |
| !!! | TAGTTTTGGTGGAAGACATG+GGG | + | chr5.1:26877096-26877115 | MS.gene45155:CDS | 40.0% |
| !!! | TCTAGTTTTGGTGGAAGACA+TGG | + | chr5.1:26877094-26877113 | MS.gene45155:CDS | 40.0% |
| AAATTTGAAGGTGGCGCGTT+GGG | - | chr5.1:26876308-26876327 | None:intergenic | 45.0% | |
| AAGCATTTGACGGAGTCCTT+GGG | + | chr5.1:26876756-26876775 | MS.gene45155:CDS | 45.0% | |
| ATATCAGCTACACCACAACG+TGG | - | chr5.1:26876443-26876462 | None:intergenic | 45.0% | |
| GCACACTATTCATTCTTCCC+CGG | + | chr5.1:26876530-26876549 | MS.gene45155:CDS | 45.0% | |
| TGCAACAGTGTGGAAGTTTG+TGG | - | chr5.1:26876513-26876532 | None:intergenic | 45.0% | |
| ! | AACCGTCATAAGTTTTGCCG+CGG | - | chr5.1:26876244-26876263 | None:intergenic | 45.0% |
| ! | AGGATCGAAAGCGTAGGTTA+GGG | - | chr5.1:26876585-26876604 | None:intergenic | 45.0% |
| ! | AGGGCATTCTTCCATTGAAG+AGG | + | chr5.1:26876934-26876953 | MS.gene45155:CDS | 45.0% |
| ! | GACAACTACTGCTACTTCGA+GGG | + | chr5.1:26877063-26877082 | MS.gene45155:CDS | 45.0% |
| ! | TAGGATCGAAAGCGTAGGTT+AGG | - | chr5.1:26876586-26876605 | None:intergenic | 45.0% |
| !!! | CACGCTTTTTCACCAACTGA+CGG | + | chr5.1:26876788-26876807 | MS.gene45155:CDS | 45.0% |
| AAGCGTGTGCTAATGTCCCA+AGG | - | chr5.1:26876775-26876794 | None:intergenic | 50.0% | |
| AATTCTACCAACGCACCACC+AGG | + | chr5.1:26876182-26876201 | MS.gene45155:CDS | 50.0% | |
| AATTTGAAGGTGGCGCGTTG+GGG | - | chr5.1:26876307-26876326 | None:intergenic | 50.0% | |
| AGCCGCGGCAAAACTTATGA+CGG | + | chr5.1:26876239-26876258 | MS.gene45155:CDS | 50.0% | |
| CAAATGCTTCTCCGTCACCA+TGG | - | chr5.1:26876745-26876764 | None:intergenic | 50.0% | |
| GAAATTTGAAGGTGGCGCGT+TGG | - | chr5.1:26876309-26876328 | None:intergenic | 50.0% | |
| GGTACAACCTCCATGAACTC+TGG | + | chr5.1:26876470-26876489 | MS.gene45155:CDS | 50.0% | |
| GTTAGGGTTTGTGTTCCCTC+CGG | - | chr5.1:26876569-26876588 | None:intergenic | 50.0% | |
| TAAGGCCTCGTCGAAGTCAT+CGG | - | chr5.1:26876333-26876352 | None:intergenic | 50.0% | |
| TACATCGTCAAGCCACGTTG+TGG | + | chr5.1:26876428-26876447 | MS.gene45155:CDS | 50.0% | |
| TTTCACCGATGACTTCGACG+AGG | + | chr5.1:26876325-26876344 | MS.gene45155:CDS | 50.0% | |
| ! | GAAGCATTTGACGGAGTCCT+TGG | + | chr5.1:26876755-26876774 | MS.gene45155:CDS | 50.0% |
| ! | GCGTTGGTAGAATTCCATGG+TGG | - | chr5.1:26876176-26876195 | None:intergenic | 50.0% |
| ! | GGACAACTACTGCTACTTCG+AGG | + | chr5.1:26877062-26877081 | MS.gene45155:CDS | 50.0% |
| ! | GGTGCGTTGGTAGAATTCCA+TGG | - | chr5.1:26876179-26876198 | None:intergenic | 50.0% |
| ! | TATAGTGGGGACCATGGTGA+CGG | + | chr5.1:26876731-26876750 | MS.gene45155:CDS | 50.0% |
| ! | TTCGCTAGGATCGAAAGCGT+AGG | - | chr5.1:26876591-26876610 | None:intergenic | 50.0% |
| !! | GGGTTTTATAGTGGGGACCA+TGG | + | chr5.1:26876725-26876744 | MS.gene45155:CDS | 50.0% |
| !! | GGTGACGGAGAAGCATTTGA+CGG | + | chr5.1:26876746-26876765 | MS.gene45155:CDS | 50.0% |
| CGAGTTCACCGGTGATGTTG+AGG | - | chr5.1:26876391-26876410 | None:intergenic | 55.0% | |
| CGTTGCATCGTCGAGTTCAC+CGG | - | chr5.1:26876402-26876421 | None:intergenic | 55.0% | |
| CGTTGGGGATATAGCCGAAG+TGG | - | chr5.1:26876292-26876311 | None:intergenic | 55.0% | |
| ! | CTTTTGGTAGGTTCGGACGG+CGG | - | chr5.1:26876360-26876379 | None:intergenic | 55.0% |
| CTTGTTTCGTGGCGTCGTCG+AGG | - | chr5.1:26876616-26876635 | None:intergenic | 60.0% | |
| ! | GCGTCGTCGAGGTTTTCGCT+AGG | - | chr5.1:26876605-26876624 | None:intergenic | 60.0% |
| ! | GGTTCGGACGGCGGATTCTA+AGG | - | chr5.1:26876351-26876370 | None:intergenic | 60.0% |
| TTGTACCCATCCCACGCGCC+TGG | - | chr5.1:26876203-26876222 | None:intergenic | 65.0% | |
| ! | AACTTCACCGGCTGCAGCCG+CGG | + | chr5.1:26876224-26876243 | MS.gene45155:CDS | 65.0% |
| ! | AGTTTTGCCGCGGCTGCAGC+CGG | - | chr5.1:26876234-26876253 | None:intergenic | 65.0% |
| CAACGCACCACCAGGCGCGT+GGG | + | chr5.1:26876190-26876209 | MS.gene45155:CDS | 70.0% | |
| CACCACCAGGCGCGTGGGAT+GGG | + | chr5.1:26876195-26876214 | MS.gene45155:CDS | 70.0% | |
| TACCCATCCCACGCGCCTGG+TGG | - | chr5.1:26876200-26876219 | None:intergenic | 70.0% | |
| TGTGTTCCCTCCGGCCAGCG+TGG | - | chr5.1:26876560-26876579 | None:intergenic | 70.0% | |
| CCAACGCACCACCAGGCGCG+TGG | + | chr5.1:26876189-26876208 | MS.gene45155:CDS | 75.0% | |
| GCACCACCAGGCGCGTGGGA+TGG | + | chr5.1:26876194-26876213 | MS.gene45155:CDS | 75.0% | |
| TCTTCCCCGGCCAGCCACGC+TGG | + | chr5.1:26876543-26876562 | MS.gene45155:CDS | 75.0% | |
| TTCCCTCCGGCCAGCGTGGC+TGG | - | chr5.1:26876556-26876575 | None:intergenic | 75.0% | |
| ! | CCACGCGCCTGGTGGTGCGT+TGG | - | chr5.1:26876192-26876211 | None:intergenic | 75.0% |
| ! | CTCCGGCCAGCGTGGCTGGC+CGG | - | chr5.1:26876552-26876571 | None:intergenic | 80.0% |
| ! | GGCCAGCCACGCTGGCCGGA+GGG | + | chr5.1:26876551-26876570 | MS.gene45155:CDS | 80.0% |
| !! | TCCGGCCAGCGTGGCTGGCC+GGG | - | chr5.1:26876551-26876570 | None:intergenic | 80.0% |
| ! | CCCCGGCCAGCCACGCTGGC+CGG | + | chr5.1:26876547-26876566 | MS.gene45155:CDS | 85.0% |
| ! | CGGCCAGCCACGCTGGCCGG+AGG | + | chr5.1:26876550-26876569 | MS.gene45155:CDS | 85.0% |
| !! | CCGGCCAGCGTGGCTGGCCG+GGG | - | chr5.1:26876550-26876569 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 26876170 | 26877171 | 26876170 | ID=MS.gene45155 |
| chr5.1 | mRNA | 26876170 | 26877171 | 26876170 | ID=MS.gene45155.t1;Parent=MS.gene45155 |
| chr5.1 | exon | 26876170 | 26877171 | 26876170 | ID=MS.gene45155.t1.exon1;Parent=MS.gene45155.t1 |
| chr5.1 | CDS | 26876170 | 26877171 | 26876170 | ID=cds.MS.gene45155.t1;Parent=MS.gene45155.t1 |
| Gene Sequence |
| Protein sequence |
