Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47146.t1 | XP_003618852.1 | 96.7 | 270 | 9 | 0 | 1 | 270 | 1 | 270 | 4.40E-140 | 507.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47146.t1 | Q5C9I9 | 56.0 | 248 | 109 | 0 | 12 | 259 | 6 | 253 | 3.1e-70 | 266.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47146.t1 | G7KNP7 | 96.7 | 270 | 9 | 0 | 1 | 270 | 1 | 270 | 3.2e-140 | 507.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene47146 | 0.845655 | 3.55E-59 | -1.69E-46 |
| MS.gene050128 | MS.gene47146 | 0.86105 | 1.35E-63 | -1.69E-46 |
| MS.gene050301 | MS.gene47146 | 0.807153 | 5.81E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene47146 | -0.820057 | 8.39E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene47146 | 0.816893 | 4.37E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene47146 | 0.811655 | 6.28E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene47146 | 0.812688 | 3.74E-51 | -1.69E-46 |
| MS.gene051535 | MS.gene47146 | 0.8212 | 4.58E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene47146 | 0.809646 | 1.71E-50 | -1.69E-46 |
| MS.gene051663 | MS.gene47146 | 0.801927 | 7.15E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene47146 | 0.813672 | 2.27E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene47146 | 0.809891 | 1.51E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene47146 | 0.830007 | 3.74E-55 | -1.69E-46 |
| MS.gene052340 | MS.gene47146 | 0.820771 | 5.75E-53 | -1.69E-46 |
| MS.gene053073 | MS.gene47146 | 0.869645 | 2.65E-66 | -1.69E-46 |
| MS.gene05316 | MS.gene47146 | 0.825769 | 3.91E-54 | -1.69E-46 |
| MS.gene053557 | MS.gene47146 | 0.843287 | 1.54E-58 | -1.69E-46 |
| MS.gene053559 | MS.gene47146 | 0.818359 | 2.04E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene47146 | 0.82593 | 3.58E-54 | -1.69E-46 |
| MS.gene054379 | MS.gene47146 | 0.815193 | 1.05E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene47146 | 0.819306 | 1.24E-52 | -1.69E-46 |
| MS.gene055133 | MS.gene47146 | 0.827516 | 1.50E-54 | -1.69E-46 |
| MS.gene055422 | MS.gene47146 | 0.809689 | 1.67E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene47146 | 0.805274 | 1.44E-49 | -1.69E-46 |
| MS.gene057754 | MS.gene47146 | 0.831161 | 1.95E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene47146 | 0.804278 | 2.33E-49 | -1.69E-46 |
| MS.gene058433 | MS.gene47146 | 0.800429 | 1.45E-48 | -1.69E-46 |
| MS.gene059285 | MS.gene47146 | 0.80485 | 1.77E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene47146 | 0.808739 | 2.67E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene47146 | 0.808071 | 3.71E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene47146 | 0.864194 | 1.45E-64 | -1.69E-46 |
| MS.gene059899 | MS.gene47146 | 0.834112 | 3.62E-56 | -1.69E-46 |
| MS.gene060084 | MS.gene47146 | 0.827977 | 1.16E-54 | -1.69E-46 |
| MS.gene060476 | MS.gene47146 | 0.818097 | 2.34E-52 | -1.69E-46 |
| MS.gene060495 | MS.gene47146 | 0.816416 | 5.59E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene47146 | 0.82257 | 2.21E-53 | -1.69E-46 |
| MS.gene061113 | MS.gene47146 | 0.814656 | 1.38E-51 | -1.69E-46 |
| MS.gene061265 | MS.gene47146 | 0.800856 | 1.18E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47146.t1 | MTR_6g023910 | 96.667 | 270 | 9 | 0 | 1 | 270 | 1 | 270 | 0.0 | 533 |
| MS.gene47146.t1 | MTR_6g023610 | 82.156 | 269 | 48 | 0 | 1 | 269 | 1 | 269 | 8.58e-166 | 460 |
| MS.gene47146.t1 | MTR_6g023590 | 73.208 | 265 | 71 | 0 | 1 | 265 | 1 | 265 | 6.08e-144 | 404 |
| MS.gene47146.t1 | MTR_6g023990 | 72.180 | 266 | 73 | 1 | 1 | 265 | 1 | 266 | 5.16e-139 | 392 |
| MS.gene47146.t1 | MTR_6g023600 | 73.962 | 265 | 69 | 0 | 1 | 265 | 1 | 265 | 5.56e-139 | 392 |
| MS.gene47146.t1 | MTR_6g023950 | 73.563 | 261 | 69 | 0 | 1 | 261 | 1 | 261 | 2.61e-135 | 382 |
| MS.gene47146.t1 | MTR_6g023600 | 72.453 | 265 | 67 | 1 | 1 | 265 | 1 | 259 | 6.49e-133 | 376 |
| MS.gene47146.t1 | MTR_7g110130 | 50.988 | 253 | 123 | 1 | 9 | 261 | 2 | 253 | 9.17e-83 | 249 |
| MS.gene47146.t1 | MTR_2g090165 | 50.593 | 253 | 123 | 2 | 9 | 261 | 2 | 252 | 1.80e-82 | 248 |
| MS.gene47146.t1 | MTR_7g110140 | 47.431 | 253 | 131 | 2 | 9 | 261 | 2 | 252 | 3.43e-75 | 230 |
| MS.gene47146.t1 | MTR_7g105460 | 45.977 | 261 | 139 | 2 | 1 | 261 | 1 | 259 | 4.26e-75 | 230 |
| MS.gene47146.t1 | MTR_7g110160 | 47.431 | 253 | 113 | 2 | 9 | 261 | 2 | 234 | 1.03e-71 | 220 |
| MS.gene47146.t1 | MTR_4g052340 | 46.586 | 249 | 128 | 3 | 12 | 260 | 13 | 256 | 3.89e-70 | 217 |
| MS.gene47146.t1 | MTR_4g052300 | 47.082 | 257 | 125 | 5 | 6 | 259 | 1 | 249 | 2.16e-69 | 215 |
| MS.gene47146.t1 | MTR_6g023940 | 57.477 | 214 | 29 | 3 | 1 | 214 | 1 | 152 | 7.61e-69 | 210 |
| MS.gene47146.t1 | MTR_7g071680 | 46.520 | 273 | 118 | 8 | 9 | 259 | 25 | 291 | 1.16e-68 | 214 |
| MS.gene47146.t1 | MTR_4g052320 | 45.703 | 256 | 135 | 3 | 6 | 261 | 1 | 252 | 1.24e-68 | 213 |
| MS.gene47146.t1 | MTR_6g035395 | 48.000 | 250 | 115 | 3 | 12 | 261 | 4 | 238 | 4.12e-68 | 211 |
| MS.gene47146.t1 | MTR_4g052350 | 43.446 | 267 | 145 | 4 | 1 | 266 | 1 | 262 | 5.28e-66 | 207 |
| MS.gene47146.t1 | MTR_4g078630 | 42.857 | 266 | 141 | 3 | 12 | 270 | 18 | 279 | 1.37e-62 | 198 |
| MS.gene47146.t1 | MTR_7g107670 | 39.623 | 265 | 152 | 4 | 7 | 266 | 27 | 288 | 6.52e-59 | 189 |
| MS.gene47146.t1 | MTR_7g083870 | 41.085 | 258 | 139 | 6 | 12 | 261 | 34 | 286 | 3.84e-57 | 185 |
| MS.gene47146.t1 | MTR_7g105590 | 46.032 | 189 | 100 | 2 | 12 | 200 | 7 | 193 | 1.71e-53 | 172 |
| MS.gene47146.t1 | MTR_4g084800 | 57.143 | 140 | 59 | 1 | 1 | 140 | 1 | 139 | 9.10e-52 | 166 |
| MS.gene47146.t1 | MTR_7g105580 | 39.200 | 250 | 132 | 3 | 12 | 261 | 7 | 236 | 7.33e-51 | 167 |
| MS.gene47146.t1 | MTR_3g020670 | 39.098 | 266 | 153 | 4 | 3 | 261 | 6 | 269 | 1.03e-50 | 168 |
| MS.gene47146.t1 | MTR_3g113870 | 42.408 | 191 | 103 | 4 | 21 | 209 | 29 | 214 | 3.81e-46 | 155 |
| MS.gene47146.t1 | MTR_7g105570 | 34.538 | 249 | 110 | 2 | 13 | 261 | 21 | 216 | 1.95e-38 | 134 |
| MS.gene47146.t1 | MTR_1g082760 | 32.700 | 263 | 154 | 9 | 9 | 259 | 36 | 287 | 2.30e-26 | 104 |
| MS.gene47146.t1 | MTR_7g113650 | 31.061 | 264 | 151 | 10 | 12 | 259 | 39 | 287 | 2.39e-26 | 104 |
| MS.gene47146.t1 | MTR_7g094510 | 30.888 | 259 | 169 | 5 | 9 | 262 | 2 | 255 | 2.79e-26 | 103 |
| MS.gene47146.t1 | MTR_4g132850 | 31.076 | 251 | 160 | 6 | 12 | 259 | 6 | 246 | 3.74e-26 | 103 |
| MS.gene47146.t1 | MTR_3g085740 | 29.368 | 269 | 170 | 9 | 1 | 262 | 64 | 319 | 4.78e-26 | 104 |
| MS.gene47146.t1 | MTR_7g094520 | 31.395 | 258 | 167 | 6 | 10 | 262 | 8 | 260 | 3.31e-25 | 100 |
| MS.gene47146.t1 | MTR_4g131740 | 26.966 | 267 | 167 | 8 | 8 | 259 | 35 | 288 | 2.25e-22 | 94.0 |
| MS.gene47146.t1 | MTR_4g064887 | 30.370 | 270 | 164 | 7 | 1 | 259 | 1 | 257 | 5.11e-21 | 89.7 |
| MS.gene47146.t1 | MTR_7g105560 | 64.179 | 67 | 23 | 1 | 1 | 67 | 1 | 66 | 6.17e-20 | 84.3 |
| MS.gene47146.t1 | MTR_1g068955 | 29.688 | 256 | 169 | 5 | 10 | 259 | 11 | 261 | 8.58e-20 | 87.0 |
| MS.gene47146.t1 | MTR_4g058810 | 27.236 | 246 | 170 | 6 | 13 | 252 | 11 | 253 | 1.59e-19 | 85.9 |
| MS.gene47146.t1 | MTR_7g063270 | 28.788 | 264 | 175 | 8 | 4 | 261 | 7 | 263 | 7.18e-19 | 84.0 |
| MS.gene47146.t1 | MTR_7g063320 | 30.224 | 268 | 177 | 7 | 1 | 262 | 1 | 264 | 7.25e-19 | 84.0 |
| MS.gene47146.t1 | MTR_3g068085 | 30.712 | 267 | 167 | 9 | 2 | 261 | 4 | 259 | 8.87e-19 | 84.0 |
| MS.gene47146.t1 | MTR_1196s0010 | 31.102 | 254 | 152 | 10 | 16 | 262 | 277 | 514 | 1.11e-18 | 85.5 |
| MS.gene47146.t1 | MTR_4g058840 | 27.200 | 250 | 165 | 7 | 13 | 252 | 11 | 253 | 1.48e-18 | 83.2 |
| MS.gene47146.t1 | MTR_4g058820 | 27.200 | 250 | 165 | 7 | 13 | 252 | 11 | 253 | 1.48e-18 | 83.2 |
| MS.gene47146.t1 | MTR_3g068070 | 29.630 | 270 | 164 | 11 | 3 | 261 | 5 | 259 | 2.72e-18 | 82.4 |
| MS.gene47146.t1 | MTR_7g063260 | 28.517 | 263 | 178 | 7 | 4 | 261 | 7 | 264 | 2.96e-18 | 82.4 |
| MS.gene47146.t1 | MTR_1g051165 | 26.054 | 261 | 173 | 7 | 12 | 258 | 13 | 267 | 1.09e-17 | 80.9 |
| MS.gene47146.t1 | MTR_4g064887 | 30.516 | 213 | 139 | 5 | 1 | 208 | 1 | 209 | 3.74e-17 | 78.6 |
| MS.gene47146.t1 | MTR_7g063390 | 28.148 | 270 | 179 | 8 | 1 | 261 | 1 | 264 | 5.90e-17 | 78.6 |
| MS.gene47146.t1 | MTR_3g068065 | 29.688 | 256 | 162 | 9 | 13 | 261 | 17 | 261 | 1.51e-16 | 77.8 |
| MS.gene47146.t1 | MTR_3g068175 | 28.253 | 269 | 157 | 9 | 9 | 259 | 13 | 263 | 2.00e-16 | 77.4 |
| MS.gene47146.t1 | MTR_3g068175 | 28.302 | 265 | 158 | 8 | 9 | 259 | 13 | 259 | 2.12e-16 | 77.4 |
| MS.gene47146.t1 | MTR_7g063360 | 29.412 | 272 | 173 | 10 | 1 | 261 | 1 | 264 | 4.04e-16 | 76.3 |
| MS.gene47146.t1 | MTR_7g063330 | 26.154 | 260 | 185 | 5 | 5 | 261 | 7 | 262 | 7.30e-16 | 75.9 |
| MS.gene47146.t1 | MTR_4g086400 | 29.858 | 211 | 124 | 5 | 14 | 207 | 5 | 208 | 2.55e-15 | 75.9 |
| MS.gene47146.t1 | MTR_8g096580 | 28.780 | 205 | 136 | 5 | 16 | 217 | 48 | 245 | 7.81e-15 | 73.6 |
| MS.gene47146.t1 | MTR_4g086410 | 30.332 | 211 | 123 | 5 | 14 | 207 | 5 | 208 | 9.71e-15 | 74.3 |
| MS.gene47146.t1 | MTR_3g068155 | 28.736 | 261 | 154 | 9 | 13 | 259 | 19 | 261 | 1.39e-14 | 72.4 |
| MS.gene47146.t1 | MTR_4g134660 | 25.668 | 187 | 134 | 5 | 13 | 196 | 6 | 190 | 9.29e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47146.t1 | AT2G47140 | 49.407 | 253 | 126 | 2 | 9 | 261 | 2 | 252 | 1.53e-80 | 243 |
| MS.gene47146.t1 | AT2G47130 | 49.027 | 257 | 120 | 5 | 9 | 261 | 2 | 251 | 8.83e-75 | 229 |
| MS.gene47146.t1 | AT3G29260 | 48.638 | 257 | 121 | 5 | 9 | 261 | 2 | 251 | 3.37e-73 | 225 |
| MS.gene47146.t1 | AT2G47120 | 47.431 | 253 | 129 | 4 | 9 | 261 | 2 | 250 | 5.32e-73 | 224 |
| MS.gene47146.t1 | AT3G29250 | 48.047 | 256 | 125 | 5 | 9 | 261 | 2 | 252 | 2.33e-72 | 223 |
| MS.gene47146.t1 | AT3G29250 | 48.062 | 258 | 126 | 5 | 7 | 261 | 36 | 288 | 3.21e-72 | 223 |
| MS.gene47146.t1 | AT2G47120 | 47.200 | 250 | 128 | 4 | 12 | 261 | 6 | 251 | 1.02e-71 | 221 |
| MS.gene47146.t1 | AT3G29250 | 47.692 | 260 | 126 | 6 | 7 | 261 | 36 | 290 | 2.55e-70 | 219 |
| MS.gene47146.t1 | AT3G51680 | 42.960 | 277 | 136 | 5 | 1 | 259 | 20 | 292 | 1.01e-64 | 204 |
| MS.gene47146.t1 | AT3G26760 | 41.045 | 268 | 147 | 6 | 7 | 266 | 30 | 294 | 8.53e-60 | 192 |
| MS.gene47146.t1 | AT3G26770 | 40.625 | 256 | 143 | 5 | 10 | 259 | 38 | 290 | 9.17e-58 | 187 |
| MS.gene47146.t1 | AT1G52340 | 42.692 | 260 | 137 | 5 | 12 | 261 | 17 | 274 | 1.67e-56 | 183 |
| MS.gene47146.t1 | AT4G03140 | 40.784 | 255 | 143 | 4 | 12 | 261 | 77 | 328 | 9.84e-56 | 182 |
| MS.gene47146.t1 | AT3G42960 | 41.606 | 274 | 146 | 7 | 6 | 270 | 1 | 269 | 8.28e-53 | 173 |
| MS.gene47146.t1 | AT5G18210 | 32.075 | 265 | 153 | 7 | 13 | 262 | 8 | 260 | 1.15e-27 | 107 |
| MS.gene47146.t1 | AT1G54870 | 30.970 | 268 | 162 | 9 | 4 | 259 | 73 | 329 | 4.12e-26 | 105 |
| MS.gene47146.t1 | AT1G54870 | 30.970 | 268 | 162 | 9 | 4 | 259 | 75 | 331 | 4.70e-26 | 104 |
| MS.gene47146.t1 | AT3G03980 | 30.258 | 271 | 172 | 5 | 4 | 262 | 5 | 270 | 1.75e-25 | 102 |
| MS.gene47146.t1 | AT3G04000 | 29.927 | 274 | 174 | 5 | 2 | 262 | 3 | 271 | 1.93e-25 | 102 |
| MS.gene47146.t1 | AT4G13180 | 29.630 | 270 | 174 | 7 | 1 | 262 | 1 | 262 | 2.67e-25 | 101 |
| MS.gene47146.t1 | AT3G05260 | 29.104 | 268 | 172 | 8 | 4 | 262 | 28 | 286 | 3.20e-24 | 99.0 |
| MS.gene47146.t1 | AT5G18210 | 32.520 | 246 | 143 | 6 | 13 | 245 | 8 | 243 | 3.49e-24 | 98.6 |
| MS.gene47146.t1 | AT4G05530 | 30.924 | 249 | 163 | 6 | 12 | 259 | 8 | 248 | 8.45e-22 | 91.7 |
| MS.gene47146.t1 | AT1G24360 | 26.772 | 254 | 169 | 7 | 12 | 259 | 73 | 315 | 1.63e-20 | 89.4 |
| MS.gene47146.t1 | AT5G06060 | 30.147 | 272 | 152 | 10 | 7 | 261 | 3 | 253 | 4.11e-20 | 87.4 |
| MS.gene47146.t1 | AT2G29340 | 29.924 | 264 | 147 | 9 | 13 | 259 | 7 | 249 | 1.17e-17 | 80.5 |
| MS.gene47146.t1 | AT2G29340 | 29.545 | 264 | 148 | 9 | 13 | 259 | 7 | 249 | 1.55e-17 | 80.9 |
| MS.gene47146.t1 | AT2G29310 | 30.451 | 266 | 147 | 11 | 13 | 261 | 7 | 251 | 2.10e-17 | 80.1 |
| MS.gene47146.t1 | AT2G29360 | 29.699 | 266 | 167 | 7 | 7 | 261 | 4 | 260 | 3.63e-17 | 79.3 |
| MS.gene47146.t1 | AT3G46170 | 25.940 | 266 | 173 | 8 | 13 | 264 | 26 | 281 | 3.86e-17 | 79.7 |
| MS.gene47146.t1 | AT1G63380 | 26.437 | 261 | 179 | 7 | 13 | 264 | 15 | 271 | 7.22e-17 | 79.0 |
| MS.gene47146.t1 | AT1G63380 | 26.437 | 261 | 179 | 7 | 13 | 264 | 17 | 273 | 7.55e-17 | 79.0 |
| MS.gene47146.t1 | AT1G63380 | 26.437 | 261 | 179 | 7 | 13 | 264 | 19 | 275 | 7.90e-17 | 78.6 |
| MS.gene47146.t1 | AT3G55290 | 26.692 | 266 | 171 | 9 | 13 | 264 | 18 | 273 | 8.63e-17 | 78.6 |
| MS.gene47146.t1 | AT1G63380 | 26.437 | 261 | 179 | 7 | 13 | 264 | 22 | 278 | 8.78e-17 | 78.6 |
| MS.gene47146.t1 | AT3G55290 | 26.692 | 266 | 171 | 9 | 13 | 264 | 17 | 272 | 8.96e-17 | 78.6 |
| MS.gene47146.t1 | AT1G07450 | 31.660 | 259 | 152 | 12 | 13 | 261 | 8 | 251 | 1.07e-16 | 78.2 |
| MS.gene47146.t1 | AT2G29150 | 30.292 | 274 | 152 | 10 | 3 | 259 | 6 | 257 | 1.53e-16 | 77.8 |
| MS.gene47146.t1 | AT2G30670 | 27.092 | 251 | 171 | 7 | 13 | 259 | 7 | 249 | 1.60e-16 | 77.4 |
| MS.gene47146.t1 | AT5G50770 | 31.016 | 187 | 121 | 5 | 13 | 196 | 45 | 226 | 4.74e-16 | 77.4 |
| MS.gene47146.t1 | AT1G62610 | 25.670 | 261 | 181 | 7 | 13 | 264 | 14 | 270 | 1.25e-15 | 75.1 |
| MS.gene47146.t1 | AT1G62610 | 25.670 | 261 | 181 | 7 | 13 | 264 | 13 | 269 | 1.32e-15 | 75.1 |
| MS.gene47146.t1 | AT1G62610 | 25.670 | 261 | 181 | 7 | 13 | 264 | 19 | 275 | 1.36e-15 | 75.1 |
| MS.gene47146.t1 | AT1G62610 | 25.670 | 261 | 181 | 7 | 13 | 264 | 15 | 271 | 1.51e-15 | 75.1 |
| MS.gene47146.t1 | AT5G50600 | 26.733 | 202 | 142 | 4 | 13 | 212 | 45 | 242 | 1.59e-15 | 75.9 |
| MS.gene47146.t1 | AT5G50700 | 26.733 | 202 | 142 | 4 | 13 | 212 | 45 | 242 | 1.59e-15 | 75.9 |
| MS.gene47146.t1 | AT2G29340 | 30.332 | 211 | 118 | 7 | 13 | 209 | 7 | 202 | 2.05e-15 | 73.2 |
| MS.gene47146.t1 | AT2G29340 | 30.332 | 211 | 118 | 7 | 13 | 209 | 7 | 202 | 2.05e-15 | 73.2 |
| MS.gene47146.t1 | AT2G29350 | 28.839 | 267 | 155 | 9 | 8 | 259 | 10 | 256 | 3.29e-15 | 73.9 |
| MS.gene47146.t1 | AT5G50690 | 30.387 | 181 | 113 | 5 | 10 | 184 | 42 | 215 | 4.49e-15 | 73.2 |
| MS.gene47146.t1 | AT5G50590 | 30.387 | 181 | 113 | 5 | 10 | 184 | 42 | 215 | 4.49e-15 | 73.2 |
| MS.gene47146.t1 | AT3G47360 | 27.778 | 198 | 129 | 7 | 13 | 204 | 45 | 234 | 4.67e-15 | 73.9 |
| MS.gene47146.t1 | AT2G29330 | 29.644 | 253 | 162 | 9 | 13 | 259 | 7 | 249 | 4.97e-15 | 73.2 |
| MS.gene47146.t1 | AT5G50690 | 30.387 | 181 | 113 | 5 | 10 | 184 | 42 | 215 | 7.73e-15 | 73.2 |
| MS.gene47146.t1 | AT5G50590 | 30.387 | 181 | 113 | 5 | 10 | 184 | 42 | 215 | 7.73e-15 | 73.2 |
| MS.gene47146.t1 | AT3G55310 | 26.568 | 271 | 165 | 11 | 13 | 264 | 17 | 272 | 9.42e-15 | 72.8 |
| MS.gene47146.t1 | AT2G29370 | 29.044 | 272 | 163 | 9 | 3 | 261 | 6 | 260 | 1.21e-14 | 72.4 |
| MS.gene47146.t1 | AT3G47350 | 25.381 | 197 | 135 | 5 | 13 | 204 | 44 | 233 | 2.36e-14 | 72.0 |
| MS.gene47146.t1 | AT3G47350 | 25.381 | 197 | 135 | 5 | 13 | 204 | 44 | 233 | 2.56e-14 | 72.0 |
| MS.gene47146.t1 | AT1G49670 | 30.542 | 203 | 117 | 6 | 18 | 203 | 9 | 204 | 3.21e-14 | 72.8 |
| MS.gene47146.t1 | AT2G29260 | 28.400 | 250 | 169 | 7 | 13 | 259 | 68 | 310 | 3.67e-14 | 71.6 |
| MS.gene47146.t1 | AT1G49670 | 30.542 | 203 | 117 | 6 | 18 | 203 | 9 | 204 | 4.15e-14 | 72.4 |
| MS.gene47146.t1 | AT2G29310 | 30.952 | 210 | 116 | 8 | 13 | 208 | 7 | 201 | 1.68e-13 | 68.2 |
| MS.gene47146.t1 | AT2G29290 | 28.352 | 261 | 155 | 7 | 13 | 259 | 7 | 249 | 2.41e-13 | 68.6 |
| MS.gene47146.t1 | AT2G29300 | 28.625 | 269 | 145 | 12 | 13 | 259 | 7 | 250 | 4.16e-13 | 67.8 |
| MS.gene47146.t1 | AT2G29320 | 28.571 | 259 | 158 | 10 | 13 | 259 | 13 | 256 | 5.49e-13 | 67.8 |
| MS.gene47146.t1 | AT2G29300 | 28.625 | 269 | 145 | 12 | 13 | 259 | 7 | 250 | 6.14e-13 | 67.8 |
| MS.gene47146.t1 | AT1G07440 | 28.063 | 253 | 165 | 8 | 13 | 259 | 12 | 253 | 8.65e-13 | 67.0 |
| MS.gene47146.t1 | AT3G47350 | 32.075 | 106 | 66 | 2 | 13 | 116 | 44 | 145 | 3.74e-12 | 65.1 |
| MS.gene47146.t1 | AT2G29310 | 29.798 | 198 | 122 | 8 | 70 | 261 | 63 | 249 | 6.74e-12 | 64.3 |
Find 64 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCGAAGCACGCAATAAT+AGG | 0.198186 | 6.3:-16864730 | MS.gene47146:CDS |
| AACTGGCAAAACATGGAATA+AGG | 0.267781 | 6.3:-16864684 | MS.gene47146:CDS |
| GGCAGATGCTGTGTTGTTCT+TGG | 0.317529 | 6.3:-16864527 | MS.gene47146:CDS |
| CAATCAACGGTCAAAACTTA+TGG | 0.317863 | 6.3:-16865173 | MS.gene47146:CDS |
| CACCATACGTGCACCTTGTT+CGG | 0.329714 | 6.3:+16865313 | None:intergenic |
| CGTCTCTTTGCCGATGCCGC+TGG | 0.343665 | 6.3:+16865349 | None:intergenic |
| CACTCACTAACAGCAGTCTT+AGG | 0.352793 | 6.3:-16865406 | MS.gene47146:CDS |
| GATATTATGTTTAGCAATGC+TGG | 0.359841 | 6.3:-16864955 | MS.gene47146:CDS |
| CTTCATTGCCCAACTCATCT+TGG | 0.372263 | 6.3:+16865276 | None:intergenic |
| GCCGATGCCGCTGGCACCTC+CGG | 0.378274 | 6.3:+16865358 | None:intergenic |
| AATGAAGTGGCTGCATCTAT+TGG | 0.402249 | 6.3:-16865260 | MS.gene47146:CDS |
| AGTGACAAAGTCAGATTCAT+TGG | 0.438975 | 6.3:+16864501 | None:intergenic |
| ACCGGAGGTGCCAGCGGCAT+CGG | 0.446928 | 6.3:-16865359 | MS.gene47146:CDS |
| GAACGTTAACTGAGAACAAA+TGG | 0.454425 | 6.3:+16864878 | None:intergenic |
| TTGTTCTCAGTTAACGTTCG+AGG | 0.458461 | 6.3:-16864874 | MS.gene47146:CDS |
| GTGAATTGTGTCTCACCAAA+TGG | 0.465319 | 6.3:-16864661 | MS.gene47146:CDS |
| GTGGATGGTAGCTTTCTTGA+TGG | 0.469944 | 6.3:-16864463 | MS.gene47146:CDS |
| CTGCATCTATTGGCAGCCAC+AGG | 0.470696 | 6.3:-16865250 | MS.gene47146:CDS |
| GTGTGCACGGCTAGCGTCGC+CGG | 0.471191 | 6.3:-16864787 | MS.gene47146:CDS |
| GCGTTCAGCTAGTAAGCAAC+TGG | 0.473902 | 6.3:-16864701 | MS.gene47146:CDS |
| CGCCGACATCCAAGATGAGT+TGG | 0.475014 | 6.3:-16865285 | MS.gene47146:CDS |
| CTCAGTTAACGTTCGAGGAA+TGG | 0.475650 | 6.3:-16864869 | MS.gene47146:CDS |
| GGAGAATACAAGAGGTTGGA+AGG | 0.477377 | 6.3:-16864574 | MS.gene47146:CDS |
| AACAGCAGTCTTAGGTTAGC+AGG | 0.489763 | 6.3:-16865398 | MS.gene47146:CDS |
| TCTAGCAATTTCATAGTCAA+TGG | 0.498304 | 6.3:+16864628 | None:intergenic |
| GGCCTTGATCTTCGTGTGGA+TGG | 0.499300 | 6.3:-16864478 | MS.gene47146:CDS |
| ATATTATGTTTAGCAATGCT+GGG | 0.504661 | 6.3:-16864954 | MS.gene47146:CDS |
| GAAACATGCGGCGCGTGCGA+TGG | 0.507406 | 6.3:-16864836 | MS.gene47146:CDS |
| AATGGTGTTGCTAATCCATT+TGG | 0.510778 | 6.3:+16864646 | None:intergenic |
| ACTGGCAAAACATGGAATAA+GGG | 0.519920 | 6.3:-16864683 | MS.gene47146:CDS |
| GGCAAAATAGCCATTGTCAC+CGG | 0.521032 | 6.3:-16865377 | MS.gene47146:CDS |
| ATGGTGGACGGTTGCGTGAG+GGG | 0.522782 | 6.3:-16864817 | MS.gene47146:CDS |
| AACGGTCAAAACTTATGGAC+AGG | 0.523815 | 6.3:-16865168 | MS.gene47146:intron |
| GAGGGGTAGCATTGTGTGCA+CGG | 0.524508 | 6.3:-16864800 | MS.gene47146:CDS |
| TGCCGAACAAGGTGCACGTA+TGG | 0.526292 | 6.3:-16865315 | MS.gene47146:CDS |
| TGTCGAAGCACGCAATAATA+GGG | 0.528464 | 6.3:-16864729 | MS.gene47146:CDS |
| AATGAATCTGACTTTGTCAC+TGG | 0.530339 | 6.3:-16864499 | MS.gene47146:CDS |
| GCGCATGTCTTTGCCGAACA+AGG | 0.531534 | 6.3:-16865326 | MS.gene47146:CDS |
| GCCGACATCCAAGATGAGTT+GGG | 0.536561 | 6.3:-16865284 | MS.gene47146:CDS |
| CTTCATGCTACCGTTGCTAC+CGG | 0.541833 | 6.3:+16864768 | None:intergenic |
| GCTGGCACCTCCGGTGACAA+TGG | 0.548752 | 6.3:+16865367 | None:intergenic |
| GATGGTGGACGGTTGCGTGA+GGG | 0.557625 | 6.3:-16864818 | MS.gene47146:CDS |
| TACCATCCACACGAAGATCA+AGG | 0.559297 | 6.3:+16864476 | None:intergenic |
| CACTGGCCTTGATCTTCGTG+TGG | 0.560496 | 6.3:-16864482 | MS.gene47146:CDS |
| ACATGCGGCGCGTGCGATGG+TGG | 0.561353 | 6.3:-16864833 | MS.gene47146:CDS |
| ATACAAGAGGTTGGAAGGAG+TGG | 0.561860 | 6.3:-16864569 | MS.gene47146:CDS |
| TCCAACACAGTCTGATCAGT+CGG | 0.565445 | 6.3:+16864922 | None:intergenic |
| CGATGGTGGACGGTTGCGTG+AGG | 0.569245 | 6.3:-16864819 | MS.gene47146:CDS |
| AGTAAGCAACTGGCAAAACA+TGG | 0.571390 | 6.3:-16864691 | MS.gene47146:CDS |
| CGAACAAGGTGCACGTATGG+TGG | 0.575204 | 6.3:-16865312 | MS.gene47146:CDS |
| GCCCAACTCATCTTGGATGT+CGG | 0.577520 | 6.3:+16865283 | None:intergenic |
| ATTGTCACCGGAGGTGCCAG+CGG | 0.592750 | 6.3:-16865365 | MS.gene47146:CDS |
| GCGGCGCGTGCGATGGTGGA+CGG | 0.599914 | 6.3:-16864829 | MS.gene47146:CDS |
| TCCGACTGATCAGACTGTGT+TGG | 0.603681 | 6.3:-16864923 | MS.gene47146:CDS |
| GCTAGCGTCGCCGGTAGCAA+CGG | 0.610358 | 6.3:-16864778 | MS.gene47146:CDS |
| CGCTACGTCACAGTGAACAT+AGG | 0.615086 | 6.3:+16865223 | None:intergenic |
| GACTATGAAATTGCTAGATG+CGG | 0.617487 | 6.3:-16864623 | MS.gene47146:CDS |
| ACTATGAAATTGCTAGATGC+GGG | 0.619444 | 6.3:-16864622 | MS.gene47146:CDS |
| CAGCGGCATCGGCAAAGAGA+CGG | 0.625686 | 6.3:-16865348 | MS.gene47146:CDS |
| AGATGAGTTGGGCAATGAAG+TGG | 0.652574 | 6.3:-16865273 | MS.gene47146:CDS |
| GGCATTGTGCGTGAAACATG+CGG | 0.656257 | 6.3:-16864848 | MS.gene47146:CDS |
| GGTTCTCAGCACTAAACATG+TGG | 0.675466 | 6.3:-16864548 | MS.gene47146:CDS |
| AAAATAGCCATTGTCACCGG+AGG | 0.684966 | 6.3:-16865374 | MS.gene47146:CDS |
| AGTGAACATAGGTGCACCTG+TGG | 0.695392 | 6.3:+16865234 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATATTATGTTTAGCAATGCT+GGG | - | chr6.3:16864906-16864925 | MS.gene47146:CDS | 25.0% |
| ! | GACAGGTAAATTAATAACTA+AGG | - | chr6.3:16864709-16864728 | MS.gene47146:CDS | 25.0% |
| ! | TGTTGTGAAAAAGAAAAAAG+TGG | + | chr6.3:16864881-16864900 | None:intergenic | 25.0% |
| CAAAAATCTCGTTCAATCAA+CGG | - | chr6.3:16864674-16864693 | MS.gene47146:CDS | 30.0% | |
| GATATTATGTTTAGCAATGC+TGG | - | chr6.3:16864905-16864924 | MS.gene47146:CDS | 30.0% | |
| TCTAGCAATTTCATAGTCAA+TGG | + | chr6.3:16865235-16865254 | None:intergenic | 30.0% | |
| !! | TGATTTTTGGAGAATACAAG+AGG | - | chr6.3:16865278-16865297 | MS.gene47146:CDS | 30.0% |
| !!! | GAGACAGTTGATTTGATTTT+TGG | - | chr6.3:16865265-16865284 | MS.gene47146:CDS | 30.0% |
| AACTGGCAAAACATGGAATA+AGG | - | chr6.3:16865176-16865195 | MS.gene47146:CDS | 35.0% | |
| AATGAATCTGACTTTGTCAC+TGG | - | chr6.3:16865361-16865380 | MS.gene47146:CDS | 35.0% | |
| ACTATGAAATTGCTAGATGC+GGG | - | chr6.3:16865238-16865257 | MS.gene47146:CDS | 35.0% | |
| ACTGGCAAAACATGGAATAA+GGG | - | chr6.3:16865177-16865196 | MS.gene47146:CDS | 35.0% | |
| AGTGACAAAGTCAGATTCAT+TGG | + | chr6.3:16865362-16865381 | None:intergenic | 35.0% | |
| CAATCAACGGTCAAAACTTA+TGG | - | chr6.3:16864687-16864706 | MS.gene47146:CDS | 35.0% | |
| GAACGTTAACTGAGAACAAA+TGG | + | chr6.3:16864985-16865004 | None:intergenic | 35.0% | |
| GACTATGAAATTGCTAGATG+CGG | - | chr6.3:16865237-16865256 | MS.gene47146:CDS | 35.0% | |
| !! | AATGGTGTTGCTAATCCATT+TGG | + | chr6.3:16865217-16865236 | None:intergenic | 35.0% |
| !! | TTTTGGAGAATACAAGAGGT+TGG | - | chr6.3:16865282-16865301 | MS.gene47146:CDS | 35.0% |
| AACGGTCAAAACTTATGGAC+AGG | - | chr6.3:16864692-16864711 | MS.gene47146:CDS | 40.0% | |
| AATGAAGTGGCTGCATCTAT+TGG | - | chr6.3:16864600-16864619 | MS.gene47146:CDS | 40.0% | |
| AGTAAGCAACTGGCAAAACA+TGG | - | chr6.3:16865169-16865188 | MS.gene47146:CDS | 40.0% | |
| ATGTCGAAGCACGCAATAAT+AGG | - | chr6.3:16865130-16865149 | MS.gene47146:intron | 40.0% | |
| GTGAATTGTGTCTCACCAAA+TGG | - | chr6.3:16865199-16865218 | MS.gene47146:CDS | 40.0% | |
| TGTCGAAGCACGCAATAATA+GGG | - | chr6.3:16865131-16865150 | MS.gene47146:intron | 40.0% | |
| TTGTTCTCAGTTAACGTTCG+AGG | - | chr6.3:16864986-16865005 | MS.gene47146:intron | 40.0% | |
| AAAATAGCCATTGTCACCGG+AGG | - | chr6.3:16864486-16864505 | MS.gene47146:CDS | 45.0% | |
| AACAGCAGTCTTAGGTTAGC+AGG | - | chr6.3:16864462-16864481 | MS.gene47146:CDS | 45.0% | |
| ATACAAGAGGTTGGAAGGAG+TGG | - | chr6.3:16865291-16865310 | MS.gene47146:CDS | 45.0% | |
| CACTCACTAACAGCAGTCTT+AGG | - | chr6.3:16864454-16864473 | MS.gene47146:CDS | 45.0% | |
| CTCAGTTAACGTTCGAGGAA+TGG | - | chr6.3:16864991-16865010 | MS.gene47146:intron | 45.0% | |
| CTTCATTGCCCAACTCATCT+TGG | + | chr6.3:16864587-16864606 | None:intergenic | 45.0% | |
| GGAGAATACAAGAGGTTGGA+AGG | - | chr6.3:16865286-16865305 | MS.gene47146:CDS | 45.0% | |
| GGCAAAATAGCCATTGTCAC+CGG | - | chr6.3:16864483-16864502 | MS.gene47146:CDS | 45.0% | |
| GGTTCTCAGCACTAAACATG+TGG | - | chr6.3:16865312-16865331 | MS.gene47146:CDS | 45.0% | |
| GTGGATGGTAGCTTTCTTGA+TGG | - | chr6.3:16865397-16865416 | MS.gene47146:CDS | 45.0% | |
| TACCATCCACACGAAGATCA+AGG | + | chr6.3:16865387-16865406 | None:intergenic | 45.0% | |
| TCCAACACAGTCTGATCAGT+CGG | + | chr6.3:16864941-16864960 | None:intergenic | 45.0% | |
| ! | AGATGAGTTGGGCAATGAAG+TGG | - | chr6.3:16864587-16864606 | MS.gene47146:CDS | 45.0% |
| AGTGAACATAGGTGCACCTG+TGG | + | chr6.3:16864629-16864648 | None:intergenic | 50.0% | |
| CACCATACGTGCACCTTGTT+CGG | + | chr6.3:16864550-16864569 | None:intergenic | 50.0% | |
| CGCTACGTCACAGTGAACAT+AGG | + | chr6.3:16864640-16864659 | None:intergenic | 50.0% | |
| CTTCATGCTACCGTTGCTAC+CGG | + | chr6.3:16865095-16865114 | None:intergenic | 50.0% | |
| GCCCAACTCATCTTGGATGT+CGG | + | chr6.3:16864580-16864599 | None:intergenic | 50.0% | |
| GCCGACATCCAAGATGAGTT+GGG | - | chr6.3:16864576-16864595 | MS.gene47146:CDS | 50.0% | |
| GCGTTCAGCTAGTAAGCAAC+TGG | - | chr6.3:16865159-16865178 | MS.gene47146:intron | 50.0% | |
| GGCATTGTGCGTGAAACATG+CGG | - | chr6.3:16865012-16865031 | MS.gene47146:intron | 50.0% | |
| TCCGACTGATCAGACTGTGT+TGG | - | chr6.3:16864937-16864956 | MS.gene47146:CDS | 50.0% | |
| ! | GGCAGATGCTGTGTTGTTCT+TGG | - | chr6.3:16865333-16865352 | MS.gene47146:CDS | 50.0% |
| CGAACAAGGTGCACGTATGG+TGG | - | chr6.3:16864548-16864567 | MS.gene47146:CDS | 55.0% | |
| CGCCGACATCCAAGATGAGT+TGG | - | chr6.3:16864575-16864594 | MS.gene47146:CDS | 55.0% | |
| CTGCATCTATTGGCAGCCAC+AGG | - | chr6.3:16864610-16864629 | MS.gene47146:CDS | 55.0% | |
| GAGGGGTAGCATTGTGTGCA+CGG | - | chr6.3:16865060-16865079 | MS.gene47146:intron | 55.0% | |
| GCGCATGTCTTTGCCGAACA+AGG | - | chr6.3:16864534-16864553 | MS.gene47146:CDS | 55.0% | |
| GGCCTTGATCTTCGTGTGGA+TGG | - | chr6.3:16865382-16865401 | MS.gene47146:CDS | 55.0% | |
| TGCCGAACAAGGTGCACGTA+TGG | - | chr6.3:16864545-16864564 | MS.gene47146:CDS | 55.0% | |
| !! | CACTGGCCTTGATCTTCGTG+TGG | - | chr6.3:16865378-16865397 | MS.gene47146:CDS | 55.0% |
| !! | ATGGTGGACGGTTGCGTGAG+GGG | - | chr6.3:16865043-16865062 | MS.gene47146:intron | 60.0% |
| !! | ATTGTCACCGGAGGTGCCAG+CGG | - | chr6.3:16864495-16864514 | MS.gene47146:CDS | 60.0% |
| !! | CAGCGGCATCGGCAAAGAGA+CGG | - | chr6.3:16864512-16864531 | MS.gene47146:CDS | 60.0% |
| !! | GATGGTGGACGGTTGCGTGA+GGG | - | chr6.3:16865042-16865061 | MS.gene47146:intron | 60.0% |
| CGTCTCTTTGCCGATGCCGC+TGG | + | chr6.3:16864514-16864533 | None:intergenic | 65.0% | |
| GAAACATGCGGCGCGTGCGA+TGG | - | chr6.3:16865024-16865043 | MS.gene47146:intron | 65.0% | |
| GCTAGCGTCGCCGGTAGCAA+CGG | - | chr6.3:16865082-16865101 | MS.gene47146:intron | 65.0% | |
| GCTGGCACCTCCGGTGACAA+TGG | + | chr6.3:16864496-16864515 | None:intergenic | 65.0% | |
| !! | CGATGGTGGACGGTTGCGTG+AGG | - | chr6.3:16865041-16865060 | MS.gene47146:intron | 65.0% |
| ACATGCGGCGCGTGCGATGG+TGG | - | chr6.3:16865027-16865046 | MS.gene47146:intron | 70.0% | |
| GTGTGCACGGCTAGCGTCGC+CGG | - | chr6.3:16865073-16865092 | MS.gene47146:intron | 70.0% | |
| !! | ACCGGAGGTGCCAGCGGCAT+CGG | - | chr6.3:16864501-16864520 | MS.gene47146:CDS | 70.0% |
| GCCGATGCCGCTGGCACCTC+CGG | + | chr6.3:16864505-16864524 | None:intergenic | 75.0% | |
| !! | GCGGCGCGTGCGATGGTGGA+CGG | - | chr6.3:16865031-16865050 | MS.gene47146:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 16864441 | 16865441 | 16864441 | ID=MS.gene47146 |
| chr6.3 | mRNA | 16864441 | 16865441 | 16864441 | ID=MS.gene47146.t1;Parent=MS.gene47146 |
| chr6.3 | exon | 16865169 | 16865441 | 16865169 | ID=MS.gene47146.t1.exon1;Parent=MS.gene47146.t1 |
| chr6.3 | CDS | 16865169 | 16865441 | 16865169 | ID=cds.MS.gene47146.t1;Parent=MS.gene47146.t1 |
| chr6.3 | exon | 16864441 | 16864980 | 16864441 | ID=MS.gene47146.t1.exon2;Parent=MS.gene47146.t1 |
| chr6.3 | CDS | 16864441 | 16864980 | 16864441 | ID=cds.MS.gene47146.t1;Parent=MS.gene47146.t1 |
| Gene Sequence |
| Protein sequence |
