AlfalfaGEDB | MS.gene47146

M. sativa cultivar XinJiangDaYe / MS.gene47146

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016491
PFAM: PF13561.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47146.t1	XP_003618852.1	96.7	270	9	0	1	270	1	270	4.40E-140	507.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47146.t1	Q5C9I9	56.0	248	109	0	12	259	6	253	3.1e-70	266.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47146.t1	G7KNP7	96.7	270	9	0	1	270	1	270	3.2e-140	507.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049758	MS.gene47146	0.845655	3.55E-59	-1.69E-46
MS.gene050128	MS.gene47146	0.86105	1.35E-63	-1.69E-46
MS.gene050301	MS.gene47146	0.807153	5.81E-50	-1.69E-46
MS.gene050623	MS.gene47146	-0.820057	8.39E-53	-1.69E-46
MS.gene050642	MS.gene47146	0.816893	4.37E-52	-1.69E-46
MS.gene050762	MS.gene47146	0.811655	6.28E-51	-1.69E-46
MS.gene050763	MS.gene47146	0.812688	3.74E-51	-1.69E-46
MS.gene051535	MS.gene47146	0.8212	4.58E-53	-1.69E-46
MS.gene051662	MS.gene47146	0.809646	1.71E-50	-1.69E-46
MS.gene051663	MS.gene47146	0.801927	7.15E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47146.t1	MTR_6g023910	96.667	270	9	0	1	270	1	270	0.0	533
MS.gene47146.t1	MTR_6g023610	82.156	269	48	0	1	269	1	269	8.58e-166	460
MS.gene47146.t1	MTR_6g023590	73.208	265	71	0	1	265	1	265	6.08e-144	404
MS.gene47146.t1	MTR_6g023990	72.180	266	73	1	1	265	1	266	5.16e-139	392
MS.gene47146.t1	MTR_6g023600	73.962	265	69	0	1	265	1	265	5.56e-139	392
MS.gene47146.t1	MTR_6g023950	73.563	261	69	0	1	261	1	261	2.61e-135	382
MS.gene47146.t1	MTR_6g023600	72.453	265	67	1	1	265	1	259	6.49e-133	376
MS.gene47146.t1	MTR_7g110130	50.988	253	123	1	9	261	2	253	9.17e-83	249
MS.gene47146.t1	MTR_2g090165	50.593	253	123	2	9	261	2	252	1.80e-82	248
MS.gene47146.t1	MTR_7g110140	47.431	253	131	2	9	261	2	252	3.43e-75	230

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47146.t1	AT2G47140	49.407	253	126	2	9	261	2	252	1.53e-80	243
MS.gene47146.t1	AT2G47130	49.027	257	120	5	9	261	2	251	8.83e-75	229
MS.gene47146.t1	AT3G29260	48.638	257	121	5	9	261	2	251	3.37e-73	225
MS.gene47146.t1	AT2G47120	47.431	253	129	4	9	261	2	250	5.32e-73	224
MS.gene47146.t1	AT3G29250	48.047	256	125	5	9	261	2	252	2.33e-72	223
MS.gene47146.t1	AT3G29250	48.062	258	126	5	7	261	36	288	3.21e-72	223
MS.gene47146.t1	AT2G47120	47.200	250	128	4	12	261	6	251	1.02e-71	221
MS.gene47146.t1	AT3G29250	47.692	260	126	6	7	261	36	290	2.55e-70	219
MS.gene47146.t1	AT3G51680	42.960	277	136	5	1	259	20	292	1.01e-64	204
MS.gene47146.t1	AT3G26760	41.045	268	147	6	7	266	30	294	8.53e-60	192

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Find 64 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGCCATTGTCACCGG+AGG	0.684966	6.3:-16865374	MS.gene47146:CDS
AACAGCAGTCTTAGGTTAGC+AGG	0.489763	6.3:-16865398	MS.gene47146:CDS
AACGGTCAAAACTTATGGAC+AGG	0.523815	6.3:-16865168	MS.gene47146:intron
AACTGGCAAAACATGGAATA+AGG	0.267781	6.3:-16864684	MS.gene47146:CDS
AATGAAGTGGCTGCATCTAT+TGG	0.402249	6.3:-16865260	MS.gene47146:CDS
AATGAATCTGACTTTGTCAC+TGG	0.530339	6.3:-16864499	MS.gene47146:CDS
AATGGTGTTGCTAATCCATT+TGG	0.510778	6.3:+16864646	None:intergenic
ACATGCGGCGCGTGCGATGG+TGG	0.561353	6.3:-16864833	MS.gene47146:CDS
ACCGGAGGTGCCAGCGGCAT+CGG	0.446928	6.3:-16865359	MS.gene47146:CDS
ACTATGAAATTGCTAGATGC+GGG	0.619444	6.3:-16864622	MS.gene47146:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAAATCTCGTTCAATCAA+CGG	-	chr6.3:16864674-16864693	MS.gene47146:CDS	30.0%
GATATTATGTTTAGCAATGC+TGG	-	chr6.3:16864905-16864924	MS.gene47146:CDS	30.0%
TCTAGCAATTTCATAGTCAA+TGG	+	chr6.3:16865235-16865254	None:intergenic	30.0%
AACTGGCAAAACATGGAATA+AGG	-	chr6.3:16865176-16865195	MS.gene47146:CDS	35.0%
AATGAATCTGACTTTGTCAC+TGG	-	chr6.3:16865361-16865380	MS.gene47146:CDS	35.0%
ACTATGAAATTGCTAGATGC+GGG	-	chr6.3:16865238-16865257	MS.gene47146:CDS	35.0%
ACTGGCAAAACATGGAATAA+GGG	-	chr6.3:16865177-16865196	MS.gene47146:CDS	35.0%
AGTGACAAAGTCAGATTCAT+TGG	+	chr6.3:16865362-16865381	None:intergenic	35.0%
CAATCAACGGTCAAAACTTA+TGG	-	chr6.3:16864687-16864706	MS.gene47146:CDS	35.0%
GAACGTTAACTGAGAACAAA+TGG	+	chr6.3:16864985-16865004	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	16864441	16865441	16864441	ID=MS.gene47146
chr6.3	mRNA	16864441	16865441	16864441	ID=MS.gene47146.t1;Parent=MS.gene47146
chr6.3	exon	16865169	16865441	16865169	ID=MS.gene47146.t1.exon1;Parent=MS.gene47146.t1
chr6.3	CDS	16865169	16865441	16865169	ID=cds.MS.gene47146.t1;Parent=MS.gene47146.t1
chr6.3	exon	16864441	16864980	16864441	ID=MS.gene47146.t1.exon2;Parent=MS.gene47146.t1
chr6.3	CDS	16864441	16864980	16864441	ID=cds.MS.gene47146.t1;Parent=MS.gene47146.t1

Gene Sequence

>MS.gene47146

ATGGCAGAATCTTCACTCACTAACAGCAGTCTTAGGTTAGCAGGCAAAATAGCCATTGTCACCGGAGGTGCCAGCGGCATCGGCAAAGAGACGGCGCATGTCTTTGCCGAACAAGGTGCACGTATGGTGGTAATCGCCGACATCCAAGATGAGTTGGGCAATGAAGTGGCTGCATCTATTGGCAGCCACAGGTGCACCTATGTTCACTGTGACGTAGCGAACGAAGATCAAGTCAAAAATCTCGTTCAATCAACGGTCAAAACTTATGGACAGGTAAATTAATAACTAAGGTTAAATATGTTTTTTTTTTGTTACAACTTGTATTTTGAAATTTTCTTTTTTATCTTTATAAAAAATTAGTACTTTTAATTCTTCGAAATATCTTTGTTTAATTCATGATTTTTCACATGTTACATGATTTTTTTATCGAAAAGCAACCACTTTTTTCTTTTTCACAACAGCTAGATATTATGTTTAGCAATGCTGGGATTGCAAGTCCGACTGATCAGACTGTGTTGGAATTCGACATTTCTCAAGCTGACCATTTGTTCTCAGTTAACGTTCGAGGAATGGCATTGTGCGTGAAACATGCGGCGCGTGCGATGGTGGACGGTTGCGTGAGGGGTAGCATTGTGTGCACGGCTAGCGTCGCCGGTAGCAACGGTAGCATGAAGTTAACAGATTACGTAATGTCGAAGCACGCAATAATAGGGTTGATGCGTTCAGCTAGTAAGCAACTGGCAAAACATGGAATAAGGGTGAATTGTGTCTCACCAAATGGATTAGCAACACCATTGACTATGAAATTGCTAGATGCGGGTGAAGAGACAGTTGATTTGATTTTTGGAGAATACAAGAGGTTGGAAGGAGTGGTTCTCAGCACTAAACATGTGGCAGATGCTGTGTTGTTCTTGGTATCCAATGAATCTGACTTTGTCACTGGCCTTGATCTTCGTGTGGATGGTAGCTTTCTTGATGGCAAATCTGAACTAGTATTTTAA

Protein sequence

>MS.gene47146.t1

MAESSLTNSSLRLAGKIAIVTGGASGIGKETAHVFAEQGARMVVIADIQDELGNEVAASIGSHRCTYVHCDVANEDQVKNLVQSTVKTYGQLDIMFSNAGIASPTDQTVLEFDISQADHLFSVNVRGMALCVKHAARAMVDGCVRGSIVCTASVAGSNGSMKLTDYVMSKHAIIGLMRSASKQLAKHGIRVNCVSPNGLATPLTMKLLDAGEETVDLIFGEYKRLEGVVLSTKHVADAVLFLVSNESDFVTGLDLRVDGSFLDGKSELVF