AlfalfaGEDB | MS.gene48530

M. sativa cultivar XinJiangDaYe / MS.gene48530

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043531 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00931.25 PF13855.9 PF18052.4

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48530.t1	XP_013447653.1	89	938	35	1	1	870	1	938	0.00E+00	1679.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48530.t1	Q9SX38	35.1	921	478	16	3	870	1	854	2.2e-149	531.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48530.t1	A0A072TW48	89.0	938	35	1	1	870	1	938	0.0e+00	1679.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene48530	0.818511	1.89E-52	-1.69E-46
MS.gene049368	MS.gene48530	0.816443	5.52E-52	-1.69E-46
MS.gene049499	MS.gene48530	0.816293	5.96E-52	-1.69E-46
MS.gene049983	MS.gene48530	0.855278	7.02E-62	-1.69E-46
MS.gene050414	MS.gene48530	0.80037	1.49E-48	-1.69E-46
MS.gene050654	MS.gene48530	0.831472	1.64E-55	-1.69E-46
MS.gene050737	MS.gene48530	0.802205	6.26E-49	-1.69E-46
MS.gene050941	MS.gene48530	0.820257	7.55E-53	-1.69E-46
MS.gene051184	MS.gene48530	0.804056	2.59E-49	-1.69E-46
MS.gene051541	MS.gene48530	0.852537	4.33E-61	-1.69E-46

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48530.t1	MTR_7g015770	94.947	475	24	0	1	475	1	475	0.0	936
MS.gene48530.t1	MTR_7g015770	96.962	395	12	0	476	870	544	938	0.0	771
MS.gene48530.t1	MTR_2g038510	46.023	943	412	15	3	868	1	923	0.0	781
MS.gene48530.t1	MTR_5g021080	33.869	933	490	26	3	850	1	891	6.57e-129	410
MS.gene48530.t1	MTR_5g027910	31.085	949	531	29	3	866	1	911	1.00e-113	370
MS.gene48530.t1	MTR_5g027870	29.884	947	540	28	3	866	1	906	3.90e-105	347
MS.gene48530.t1	MTR_5g027860	29.149	940	552	21	3	866	1	902	4.76e-100	333
MS.gene48530.t1	MTR_5g027900	28.737	950	545	24	3	866	1	904	3.57e-97	325
MS.gene48530.t1	MTR_5g027810	29.681	940	552	24	3	866	1	907	3.60e-96	323
MS.gene48530.t1	MTR_4g073840	31.125	951	507	34	3	840	1	916	4.33e-95	320

Showing 1 to 10 of 447 entries

Previous1 2 3 4 5…45Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48530.t1	AT1G50180	35.147	919	480	16	3	870	1	854	4.31e-166	505
MS.gene48530.t1	AT5G43470	34.881	926	524	21	3	870	1	905	2.18e-160	492
MS.gene48530.t1	AT5G43470	34.881	926	524	21	3	870	1	905	2.18e-160	492
MS.gene48530.t1	AT5G43470	34.881	926	524	21	3	870	1	905	2.18e-160	492
MS.gene48530.t1	AT5G43470	34.881	926	524	21	3	870	1	905	2.18e-160	492
MS.gene48530.t1	AT1G58400	34.624	930	519	21	3	868	1	905	3.10e-159	489
MS.gene48530.t1	AT1G58400	34.624	930	519	21	3	868	1	905	3.10e-159	489
MS.gene48530.t1	AT1G58390	36.159	932	502	22	3	870	1	903	1.95e-158	486
MS.gene48530.t1	AT1G58390	36.159	932	502	22	3	870	1	903	1.95e-158	486
MS.gene48530.t1	AT5G48620	34.973	935	511	24	3	870	1	905	1.02e-156	482

Showing 1 to 10 of 120 entries

Previous1 2 3 4 5…12Next

Find 177 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAATTAATTCAGTTG+TGG	0.535878	7.2:+82123271	MS.gene48530:CDS
AAAATGGTATGCTCAATAAA+TGG	0.328701	7.2:+82124488	MS.gene48530:CDS
AAAATTAGCTTATGATGCTG+AGG	0.593974	7.2:+82120820	MS.gene48530:CDS
AAACATGGTTTCAGTTGATA+AGG	0.380946	7.2:-82123207	None:intergenic
AAACTATCAATAAAGTAAGT+TGG	0.396521	7.2:+82123934	MS.gene48530:CDS
AAAGGAAACAATCAATGAAT+GGG	0.482096	7.2:+82123083	MS.gene48530:CDS
AAAGGCTTGCTTCATGAACC+AGG	0.462557	7.2:+82121550	MS.gene48530:CDS
AAAGTGTGCTGGTTTGCCTT+TGG	0.422720	7.2:+82123029	MS.gene48530:CDS
AAAGTTAACTTTGAAAGTTG+TGG	0.547981	7.2:-82124371	None:intergenic
AAATCATTCAAGATTAGACT+TGG	0.522773	7.2:+82124695	MS.gene48530:CDS

Showing 1 to 10 of 177 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACAGATTTCCAACTTCTTT+AGG	-	chr7.2:82123822-82123841	None:intergenic	30.0%
AACCAGGTATTTCATGTAAT+AGG	-	chr7.2:82121785-82121804	None:intergenic	30.0%
ACATAAAGAAAGTTGTGGAA+TGG	+	chr7.2:82121107-82121126	MS.gene48530:CDS	30.0%
ACTGAAAAAGCTCAGAAAAT+TGG	+	chr7.2:82124130-82124149	MS.gene48530:CDS	30.0%
AGAAATGTAGAGTTGAAAGT+TGG	+	chr7.2:82123709-82123728	MS.gene48530:CDS	30.0%
AGGCTATTACATGAATCTTT+AGG	-	chr7.2:82122105-82122124	None:intergenic	30.0%
ATGCGGTTAATTATGTTCAA+TGG	-	chr7.2:82122588-82122607	None:intergenic	30.0%
ATTAGTGATACTAGAAGGAA+AGG	-	chr7.2:82122125-82122144	None:intergenic	30.0%
ATTCAATTGTGTTGAGCATA+TGG	+	chr7.2:82122526-82122545	MS.gene48530:intron	30.0%
CAAAGGAAACAATCAATGAA+TGG	+	chr7.2:82123082-82123101	MS.gene48530:CDS	30.0%

Showing 1 to 10 of 260 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	82120614	82124778	82120614	ID=MS.gene48530
chr7.2	mRNA	82120614	82124778	82120614	ID=MS.gene48530.t1;Parent=MS.gene48530
chr7.2	exon	82120614	82121640	82120614	ID=MS.gene48530.t1.exon1;Parent=MS.gene48530.t1
chr7.2	CDS	82120614	82121640	82120614	ID=cds.MS.gene48530.t1;Parent=MS.gene48530.t1
chr7.2	exon	82122980	82123372	82122980	ID=MS.gene48530.t1.exon2;Parent=MS.gene48530.t1
chr7.2	CDS	82122980	82123372	82122980	ID=cds.MS.gene48530.t1;Parent=MS.gene48530.t1
chr7.2	exon	82123586	82124778	82123586	ID=MS.gene48530.t1.exon3;Parent=MS.gene48530.t1
chr7.2	CDS	82123586	82124778	82123586	ID=cds.MS.gene48530.t1;Parent=MS.gene48530.t1

Gene Sequence

>MS.gene48530

ATGTTAATGGTTGAGTCAGTTGTGTCCTTTACAATTGAAAGGCTTGCTGACCTCCTAATTGAAGAGGCCAATCTGTTAAGTGGGGTAAGTGACCAAATCAAGAAATTACAAATTGAACTAAAGCGGATGCAATGCTTCTTAAGGGATGCTGAGAGAAAGCAGGATGAAGGTGGTGAGACTATAAAGAATTGGATATCCGAGATTCGAAAATTAGCTTATGATGCTGAGGATGTGATTGAAACTTATGCCATCAAAGTTTCATTTTCAGGAGCAATGACTCCTTTCTACAAACTAAGGCATGATCACAAAATTGGAAACAAGATTATATCTATTAATTCCCAAATAGAAAACCTTACAAGAAGTTTACAAACATACGGTTTGACTGCAACAACAAGAGACAATGAAGAATCACACTTTATGATTCAGACACAGAGGCAATTGAGATGGTCTTATTCTCATGTGGTTGAAGAGGTCACTGTAGGGTTGGATAAGGACATAAAGAAAGTTGTGGAATGGCTACTAAATCAAGATCAACATTGTCAAATGGTTTATATTTGTGGAATGGGCGGTCTAGGTAAAACAACACTTGCTAAAAATGTTTATCATCATAGTTCCATTAGGCGACACTTTGAAGGTTTTGCTTGGGCTTATATATCTCAAAAATGCAATAGAAGAGAGGTTTGGGAGGGAATCTTACTTCAGCTTACTACTTCTTCTTCCAAAGAAGAGAGAGATGAGATTAGGAACATGAGAGATGAAGAATTGGCAAAAAAGTTGTACAAAGTTCAACAAGAGAAAATGTGTTTGATCGTCTTGGATGACATATGGAGCAATGAGACTTGGGATATTTTAAGTCCAGCCTTTCCATCAAAAAATGCAAAGAGTAAGATGGTTTTTACATCACGCAATAAAGCCGTCTCATCACATGTAGATTCCAAAGGCTTGCTTCATGAACCAGGGTTCTTAAATGCAGAAGATAGTTGGGCGTTGTTTCAGAAGAAAGCTTTTCCAACTAAAGATGATCCGGGTAATATACTTGAATCTTGAAAATATCGTTTTCATTTATGAACGAGAAGTAGTTAGAGAAATTGATGTGTAAGGGTAGGAAAAGTTGTTCTAAGTATACACATTGATTGAGGATAAAAAAACATGAGTGATTAGTTCAATTCCTATTACATGAAATACCTGGTTTTCCTTTCACCAAGTGTTTGTTTGGACTGATTTGTTTTTTCTTATATATTGTGATAAGCACTTGTGAGACTGTTGAGCTTTTGGAAACAACTTATAACATGTTCATAGGAAGTTTTCTGGTTATCTCCATAGGCTCCCGCGAATAGCTTATAAATTATGTGAACACGATTTGAATTTATTTTATTTTTTGTTATAGAAACAAACTATACAGAAGCACTTATATGGTAAGTGTCTGTACTACAAACGCTAAGTTTAGTTTGAAACAAAACAGTTGCAGACTTCTAGCTCATCTCATTTCCTAAAGATTCATGTAATAGCCTTTCCTTCTAGTATCACTAATAACTAATCATTGAGATATCTTTCTAACTTATTGATTACTAAAGCAGCATTCAAAATTTTGACATGACTTTGATCTGCTCTTGTTGCTTTCTTCATGAATATAACATCTAGATGAGGAGATTCAAAGAAACTAAAATTTTGCTAGAACACTATAAATAATGAGCTTAAAATGGAGTATGTAGTAGACTAGCTCGTGTATTTTTATATACCATTGTAATATATATCTCAATCTTTTGCTCAGATATGAGTTGATTCTCACGAGTTAGAAAATTTGACTTGATTTGAAAATTTACCTTGTTGAAGAATTTACTGAGATTTGTAACAGGGTATGACATTAATTTAACAGTTTTCTAAAATTTACTTCATTGAAGAATTGACATTAATTCAATTGTGTTGAGCATATGGTTAATGAGTTGTGATACATGTTATATCAGTAACCATCCATTGAACATAATTAACCGCATATTTAAATTGCGTTAACGATCAATATTGTTGTCGAATTTTAATTTCAAATTGTATATCAAAATATCATTTCTCTTAATTTATAAGACTCAATGGAGTCTACACGAGAGTAGACAAGAACAAGAACTTTGAGCTTTTTGTCTCCTTTAGTTTTTACACCCTTACAAACATTCATGTTATATTTTAAATAACAATATTTAAGTTGATGTATTTGCAATACTTTAAACACTTCTCTTGTCTCCTTGACCTGCGTAATATTGGAGGGGTTAAAACTTTATGTTTGTTGTTTGCATGTATCTCTAGAAATAGTTCATGTATGCATAATTTTTTTTTTTTTTTCATTTAACTTGAATATTAGCTTGTACCTTTTGCAGAATTCAAAATTTGCAATGAGTTTGAAAGATTAGGCCGAGATATGGTTGCAAAGTGTGCTGGTTTGCCTTTGGCTATCATTGTACTTGGAGGACTTTTGGCTACAAAGGAAACAATCAATGAATGGGAAATGATACATAAACATATAACCTCCTACCTAATAAGAGGAGATGTACTTGAAAGACAGTCAAGATTAGCTGAGGTGTTGGATTTAAGTTACCACAACATGCCTTATCAACTGAAACCATGTTTTCTTTATTTAAGTCAATTTCCAGAAGACTTTGAGATACCAAAAAATAAATTAATTCAGTTGTGGATGGCAGAAGGTTTTGTTTCATCTCAATATGAGATTGAAAGGGATGAAAGATTGGAGGATGTCGCTGAGCGTTACCTAGGTAGCTTAATTAGCCGTTGCATGGTTCAAGTTGGTCAGATGGGGTCTACTGGAAAGATTAAAACTTGTCGGCTGCATGACTTAATGCGTGATATGTGTTTGTCAAAGGCTAGAAAAGAACATTTTCTTAGTGTTATTAGCAGATCACAAAAAGATAGTAATAGCATTAATGATGTATCATCATCACCATCATCATCATCTACTCTATTATTAGATTCAAGAAAAACCGGCGGAGTTCGTAGGCTTACATTTTTCTTGGATAAACATGTTGATAAATTGGTTCCACCCAATGAGCAAGTGAGTCAACATCTTAGATCTCTTGTATATTTCAATGATAAGAAATGTAGAGTTGAAAGTTGGAAGCTACTTAAAACTGTTTTTGAGAACTTCAAATTACTTAGAGTTCTTGATCTTGAAGGAGTTAAGGGGTCAAAGGGACAATTATTGCCTAAAGAAGTTGGAAATCTGTTTTGGTTGAAGTTTTTGAGTTTGAAAAGGACTTGTATACAAATTCTTCCATCTTCATTAGGCAAGTTGGAAAATCTGCAGAGCCTAAATTTGCAAACTATCAATAAAGTAAGTTGGGATTCAACAGTAGAAATTCCAAACGTAATATGGAAGTTAAAACGGTTGAGACATTTATATCTTCCCAATTGGTGTGGAAATGTTCCTGGCATCCTGCAACTTGAAAATCTAATCAACTTACAGACACTAGTAAATTTTCCAGCCAGTAAATGTGACGTGAGTGATTTGTTAAAACTGAAAAAGCTCAGAAAATTGGTACTGAATGATCCAAGGTATTTCCAAAAATTTTCCGAAAGTTTCACTCTTTGTAATCAAAAGTTGGATTGTCTGGAATCATTGTCCTTAAAAACTGATTTGCTTTCATTCCCTGATCAAGTAGTGGATGTTGAAAAATTAGTTCTAGGTTGTCCTTCACTTCACAAACTCCATGTAGAGGGGAGAATGGAAAGGCTTCCAGAAGCTCAACTATTTCCACCACAACTTTCAAAGTTAACTTTGTGGGGTTGTAAACTTGTGGAAGATCCAATGGTGACATTAGAGAAGCTTCCTAATTTGAAGTACCTAAGTGGTTGGGAAATGTACGTTGGGAAGAAAATGGTATGCTCAATAAATGGTTTTCCTAAACTGGAAGTTCTAGCTATCCGTGGCTTTTCTAATTTAGAAGAGTGGGTGGTTGAGAATCAAGCCATGCCTCATCTTTGTAGATTGAGCATATCTGATTGCAACAAATTAAAGAGTGTTCCTGATGGACTAACATTTGTTGCCGGTCTAAGGGAGTTGGAGATCAGATGGATGCCTAAATCATTCAAGATTAGACTTGGAATTGCCGGAGAGGATTATCACAAAGTCCAACATGTTCCATCCGTTGTATTTTTCAACTAA

Protein sequence

>MS.gene48530.t1

MLMVESVVSFTIERLADLLIEEANLLSGVSDQIKKLQIELKRMQCFLRDAERKQDEGGETIKNWISEIRKLAYDAEDVIETYAIKVSFSGAMTPFYKLRHDHKIGNKIISINSQIENLTRSLQTYGLTATTRDNEESHFMIQTQRQLRWSYSHVVEEVTVGLDKDIKKVVEWLLNQDQHCQMVYICGMGGLGKTTLAKNVYHHSSIRRHFEGFAWAYISQKCNRREVWEGILLQLTTSSSKEERDEIRNMRDEELAKKLYKVQQEKMCLIVLDDIWSNETWDILSPAFPSKNAKSKMVFTSRNKAVSSHVDSKGLLHEPGFLNAEDSWALFQKKAFPTKDDPEFKICNEFERLGRDMVAKCAGLPLAIIVLGGLLATKETINEWEMIHKHITSYLIRGDVLERQSRLAEVLDLSYHNMPYQLKPCFLYLSQFPEDFEIPKNKLIQLWMAEGFVSSQYEIERDERLEDVAERYLDSRKTGGVRRLTFFLDKHVDKLVPPNEQVSQHLRSLVYFNDKKCRVESWKLLKTVFENFKLLRVLDLEGVKGSKGQLLPKEVGNLFWLKFLSLKRTCIQILPSSLGKLENLQSLNLQTINKVSWDSTVEIPNVIWKLKRLRHLYLPNWCGNVPGILQLENLINLQTLVNFPASKCDVSDLLKLKKLRKLVLNDPRYFQKFSESFTLCNQKLDCLESLSLKTDLLSFPDQVVDVEKLVLGCPSLHKLHVEGRMERLPEAQLFPPQLSKLTLWGCKLVEDPMVTLEKLPNLKYLSGWEMYVGKKMVCSINGFPKLEVLAIRGFSNLEEWVVENQAMPHLCRLSISDCNKLKSVPDGLTFVAGLRELEIRWMPKSFKIRLGIAGEDYHKVQHVPSVVFFN