Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50880.t1 | RHN66022.1 | 93 | 327 | 23 | 0 | 1 | 327 | 1 | 327 | 1.20E-177 | 632.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50880.t1 | Q9FF10 | 57.5 | 318 | 132 | 2 | 10 | 326 | 15 | 330 | 5.0e-113 | 409.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50880.t1 | A0A396IKE5 | 93.0 | 327 | 23 | 0 | 1 | 327 | 1 | 327 | 8.3e-178 | 632.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049369 | MS.gene50880 | 0.836742 | 7.83E-57 | -1.69E-46 |
| MS.gene049396 | MS.gene50880 | 0.80944 | 1.89E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene50880 | 0.820978 | 5.16E-53 | -1.69E-46 |
| MS.gene050444 | MS.gene50880 | 0.822817 | 1.93E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene50880 | 0.802322 | 5.93E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene50880 | 0.806783 | 6.96E-50 | -1.69E-46 |
| MS.gene051228 | MS.gene50880 | 0.837328 | 5.55E-57 | -1.69E-46 |
| MS.gene052870 | MS.gene50880 | 0.807413 | 5.12E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene50880 | 0.811227 | 7.78E-51 | -1.69E-46 |
| MS.gene053384 | MS.gene50880 | 0.807541 | 4.81E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene50880 | 0.827305 | 1.68E-54 | -1.69E-46 |
| MS.gene053912 | MS.gene50880 | 0.837956 | 3.83E-57 | -1.69E-46 |
| MS.gene053916 | MS.gene50880 | 0.811803 | 5.83E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene50880 | 0.801164 | 1.02E-48 | -1.69E-46 |
| MS.gene05505 | MS.gene50880 | 0.801716 | 7.90E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene50880 | 0.805258 | 1.46E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene50880 | 0.816732 | 4.75E-52 | -1.69E-46 |
| MS.gene056387 | MS.gene50880 | 0.80537 | 1.38E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene50880 | 0.820431 | 6.88E-53 | -1.69E-46 |
| MS.gene056487 | MS.gene50880 | 0.831375 | 1.73E-55 | -1.69E-46 |
| MS.gene056511 | MS.gene50880 | 0.821743 | 3.43E-53 | -1.69E-46 |
| MS.gene056549 | MS.gene50880 | 0.830489 | 2.85E-55 | -1.69E-46 |
| MS.gene056609 | MS.gene50880 | 0.806646 | 7.43E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene50880 | 0.81401 | 1.92E-51 | -1.69E-46 |
| MS.gene057076 | MS.gene50880 | 0.824696 | 7.02E-54 | -1.69E-46 |
| MS.gene057734 | MS.gene50880 | 0.80255 | 5.32E-49 | -1.69E-46 |
| MS.gene057857 | MS.gene50880 | 0.808534 | 2.95E-50 | -1.69E-46 |
| MS.gene057926 | MS.gene50880 | 0.838865 | 2.23E-57 | -1.69E-46 |
| MS.gene057927 | MS.gene50880 | 0.825995 | 3.46E-54 | -1.69E-46 |
| MS.gene058459 | MS.gene50880 | 0.830773 | 2.43E-55 | -1.69E-46 |
| MS.gene05913 | MS.gene50880 | 0.839318 | 1.70E-57 | -1.69E-46 |
| MS.gene059305 | MS.gene50880 | 0.821301 | 4.34E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene50880 | 0.805075 | 1.59E-49 | -1.69E-46 |
| MS.gene059674 | MS.gene50880 | 0.80063 | 1.32E-48 | -1.69E-46 |
| MS.gene059711 | MS.gene50880 | 0.801956 | 7.05E-49 | -1.69E-46 |
| MS.gene059807 | MS.gene50880 | 0.812313 | 4.51E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene50880 | 0.817341 | 3.47E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene50880 | 0.813535 | 2.44E-51 | -1.69E-46 |
| MS.gene060818 | MS.gene50880 | 0.855994 | 4.34E-62 | -1.69E-46 |
| MS.gene060832 | MS.gene50880 | 0.813292 | 2.76E-51 | -1.69E-46 |
| MS.gene06097 | MS.gene50880 | 0.819555 | 1.09E-52 | -1.69E-46 |
| MS.gene060981 | MS.gene50880 | 0.824575 | 7.49E-54 | -1.69E-46 |
| MS.gene061041 | MS.gene50880 | 0.844047 | 9.63E-59 | -1.69E-46 |
| MS.gene061134 | MS.gene50880 | 0.839115 | 1.92E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50880.t1 | MTR_3g023700 | 92.661 | 327 | 24 | 0 | 1 | 327 | 1 | 327 | 0.0 | 632 |
| MS.gene50880.t1 | MTR_3g023690 | 89.908 | 327 | 32 | 1 | 1 | 327 | 1 | 326 | 0.0 | 606 |
| MS.gene50880.t1 | MTR_3g023710 | 79.755 | 326 | 64 | 1 | 1 | 324 | 1 | 326 | 0.0 | 549 |
| MS.gene50880.t1 | MTR_4g109300 | 67.638 | 309 | 98 | 1 | 19 | 327 | 19 | 325 | 2.30e-156 | 450 |
| MS.gene50880.t1 | MTR_4g109300 | 67.638 | 309 | 98 | 1 | 19 | 327 | 19 | 325 | 2.46e-156 | 450 |
| MS.gene50880.t1 | MTR_4g109300 | 60.933 | 343 | 98 | 2 | 19 | 327 | 19 | 359 | 3.49e-149 | 432 |
| MS.gene50880.t1 | MTR_3g023690 | 90.164 | 183 | 18 | 0 | 145 | 327 | 56 | 238 | 9.48e-116 | 342 |
| MS.gene50880.t1 | MTR_5g043710 | 43.605 | 344 | 187 | 2 | 1 | 344 | 1 | 337 | 6.74e-102 | 309 |
| MS.gene50880.t1 | MTR_2g451510 | 45.231 | 325 | 170 | 3 | 4 | 324 | 12 | 332 | 9.55e-97 | 297 |
| MS.gene50880.t1 | MTR_4g116070 | 47.119 | 295 | 144 | 4 | 25 | 314 | 39 | 326 | 1.56e-89 | 278 |
| MS.gene50880.t1 | MTR_4g109300 | 67.033 | 182 | 58 | 1 | 146 | 327 | 1 | 180 | 1.16e-82 | 256 |
| MS.gene50880.t1 | MTR_4g116040 | 41.477 | 176 | 98 | 2 | 169 | 344 | 15 | 185 | 1.37e-36 | 135 |
| MS.gene50880.t1 | MTR_4g109260 | 52.564 | 78 | 37 | 0 | 229 | 306 | 59 | 136 | 3.58e-22 | 91.3 |
| MS.gene50880.t1 | MTR_8g091920 | 34.752 | 141 | 46 | 4 | 174 | 307 | 2 | 103 | 3.53e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50880.t1 | AT5G07830 | 56.615 | 325 | 136 | 3 | 3 | 326 | 10 | 330 | 1.47e-139 | 407 |
| MS.gene50880.t1 | AT5G61250 | 57.716 | 324 | 133 | 2 | 3 | 326 | 7 | 326 | 6.14e-139 | 405 |
| MS.gene50880.t1 | AT5G61250 | 57.716 | 324 | 133 | 2 | 3 | 326 | 7 | 326 | 6.14e-139 | 405 |
| MS.gene50880.t1 | AT5G61250 | 57.716 | 324 | 133 | 2 | 3 | 326 | 7 | 326 | 6.14e-139 | 405 |
| MS.gene50880.t1 | AT5G34940 | 46.588 | 337 | 170 | 5 | 2 | 334 | 4 | 334 | 2.07e-99 | 304 |
| MS.gene50880.t1 | AT5G34940 | 45.697 | 337 | 173 | 5 | 2 | 334 | 4 | 334 | 1.18e-97 | 294 |
| MS.gene50880.t1 | AT5G34940 | 47.805 | 205 | 101 | 3 | 130 | 334 | 1 | 199 | 9.15e-55 | 184 |
| MS.gene50880.t1 | AT5G34940 | 38.000 | 100 | 58 | 2 | 235 | 334 | 2 | 97 | 1.96e-13 | 70.5 |
Find 85 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACATTTAGAATTCGTTTA+AGG | 0.175950 | 3.1:-14219771 | None:intergenic |
| CCTTGCATTGTTTCTCCTTT+TGG | 0.187389 | 3.1:+14218155 | MS.gene50880:CDS |
| AAGATTGATGCATGGGAATT+TGG | 0.194764 | 3.1:+14219346 | MS.gene50880:CDS |
| AATAAGCTTCTTCAGCTTTC+TGG | 0.195080 | 3.1:+14219862 | MS.gene50880:CDS |
| TCCACTTCGCTCAACTTATC+AGG | 0.253266 | 3.1:-14220122 | None:intergenic |
| CATCCATTTCAAAAGATTAA+AGG | 0.268863 | 3.1:+14218767 | MS.gene50880:CDS |
| TGCAGGGCCATTGTAATGTT+TGG | 0.294362 | 3.1:+14219208 | MS.gene50880:intron |
| CATGGTTTGCTACTAGTAAA+TGG | 0.313611 | 3.1:+14218213 | MS.gene50880:CDS |
| TCAGTTGGCGTTGCACAGTA+TGG | 0.322032 | 3.1:+14219733 | MS.gene50880:CDS |
| AAGCCGAAGTTGCATGATTC+AGG | 0.328540 | 3.1:-14218297 | None:intergenic |
| TTAGTAATAATAGTAATGTT+TGG | 0.347803 | 3.1:+14219260 | MS.gene50880:CDS |
| GACTCATCATTTATATAACT+TGG | 0.357988 | 3.1:+14219906 | MS.gene50880:CDS |
| CTTCTTCAGCTTTCTGGTCC+AGG | 0.370053 | 3.1:+14219868 | MS.gene50880:CDS |
| ATAAAATCATAAGCATTTGT+AGG | 0.374953 | 3.1:-14219298 | None:intergenic |
| ACATTCATCTATTGTAACTT+TGG | 0.392802 | 3.1:+14218332 | MS.gene50880:CDS |
| TAGTAATAATAGTAATGTTT+GGG | 0.392856 | 3.1:+14219261 | MS.gene50880:CDS |
| TCATTTGCGCAACGATTGAT+TGG | 0.408596 | 3.1:+14218268 | MS.gene50880:CDS |
| ATACAAACCTTGGATTGCTT+TGG | 0.414616 | 3.1:-14218501 | None:intergenic |
| CTGATGGGAAAGAAGGTTCT+TGG | 0.417600 | 3.1:+14220679 | MS.gene50880:CDS |
| GAGAATCTGGCGGGATATCT+AGG | 0.424647 | 3.1:+14220210 | MS.gene50880:CDS |
| TCTGCATGGGTAGGAGAATC+TGG | 0.430566 | 3.1:+14220197 | MS.gene50880:CDS |
| TAATGTTTGGGAAGGAGCTT+GGG | 0.432868 | 3.1:+14219273 | MS.gene50880:CDS |
| GGATAGCCCTCAAGCCTTTG+AGG | 0.434312 | 3.1:+14218678 | MS.gene50880:intron |
| TATAAAGTACACTGTTTCAA+AGG | 0.437179 | 3.1:+14219318 | MS.gene50880:CDS |
| TGGAGGTTCTCTGCAAGATC+AGG | 0.452653 | 3.1:+14218709 | MS.gene50880:CDS |
| ACTATTGTGGCATCGGCTGA+TGG | 0.464644 | 3.1:+14220663 | MS.gene50880:CDS |
| TCTTATCCTCAAAGGCTTGA+GGG | 0.474214 | 3.1:-14218684 | None:intergenic |
| TAAAATCATAAGCATTTGTA+GGG | 0.476533 | 3.1:-14219297 | None:intergenic |
| GTAATGTTTGGGAAGGAGCT+TGG | 0.477806 | 3.1:+14219272 | MS.gene50880:CDS |
| TAACTTGAAGAGAGGCCAAA+AGG | 0.479441 | 3.1:-14218170 | None:intergenic |
| GGTAATGAGCTGAGTGGTAC+AGG | 0.479508 | 3.1:+14219700 | MS.gene50880:intron |
| TCCTTATCATAACTTCCATC+AGG | 0.484905 | 3.1:-14219832 | None:intergenic |
| ATAAAGTACACTGTTTCAAA+GGG | 0.487781 | 3.1:+14219319 | MS.gene50880:CDS |
| GTCAGAACATTGATTATGCC+TGG | 0.496284 | 3.1:-14219886 | None:intergenic |
| TGGTCCTTGGGCTTCTGCAT+GGG | 0.508220 | 3.1:+14220184 | MS.gene50880:CDS |
| CCTTTGAGGATAAGACTTGG+AGG | 0.508884 | 3.1:+14218692 | MS.gene50880:CDS |
| CCCTCACTTGTAGCACCTGA+TGG | 0.511377 | 3.1:+14219817 | MS.gene50880:CDS |
| CTATTGTGGCATCGGCTGAT+GGG | 0.511834 | 3.1:+14220664 | MS.gene50880:CDS |
| ATGGTCCTTGGGCTTCTGCA+TGG | 0.513793 | 3.1:+14220183 | MS.gene50880:CDS |
| ACCTGATGGAAGTTATGATA+AGG | 0.514081 | 3.1:+14219831 | MS.gene50880:CDS |
| ACTCATCATTTATATAACTT+GGG | 0.514313 | 3.1:+14219907 | MS.gene50880:CDS |
| AACCTTGGATTGCTTTGGCA+AGG | 0.518517 | 3.1:-14218496 | None:intergenic |
| GGGATACAAGATTGATGCAT+GGG | 0.521559 | 3.1:+14219339 | MS.gene50880:CDS |
| GTAGGAAAATTAAAGTCTCC+TGG | 0.522183 | 3.1:+14218743 | MS.gene50880:CDS |
| CTGCAAACAGCGCACTATTG+TGG | 0.522677 | 3.1:+14220650 | MS.gene50880:intron |
| CATTTATATAACTTGGGCCG+AGG | 0.527239 | 3.1:+14219913 | MS.gene50880:CDS |
| TTTGCGCAACGATTGATTGG+TGG | 0.534224 | 3.1:+14218271 | MS.gene50880:CDS |
| CCTTGGGCTTCTGCATGGGT+AGG | 0.537885 | 3.1:+14220188 | MS.gene50880:CDS |
| ACAGGCGTTGGTGCATCAGT+TGG | 0.539232 | 3.1:+14219718 | MS.gene50880:CDS |
| CTCCTTGCCAAAGCAATCCA+AGG | 0.539603 | 3.1:+14218494 | MS.gene50880:CDS |
| ACAGCGCACTATTGTGGCAT+CGG | 0.543852 | 3.1:+14220656 | MS.gene50880:intron |
| GTCTTATCCTCAAAGGCTTG+AGG | 0.551318 | 3.1:-14218685 | None:intergenic |
| GCATCGGCTGATGGGAAAGA+AGG | 0.553242 | 3.1:+14220672 | MS.gene50880:CDS |
| CAGTTGGCGTTGCACAGTAT+GGG | 0.563243 | 3.1:+14219734 | MS.gene50880:CDS |
| TGGATTGCTTTGGCAAGGAG+AGG | 0.567029 | 3.1:-14218491 | None:intergenic |
| CCATTTCAAAAGATTAAAGG+TGG | 0.568399 | 3.1:+14218770 | MS.gene50880:CDS |
| ATGGAAGTTATGATAAGGAA+TGG | 0.569045 | 3.1:+14219836 | MS.gene50880:CDS |
| TCCTGATAAGTTGAGCGAAG+TGG | 0.570660 | 3.1:+14220121 | MS.gene50880:CDS |
| GATCTTTACACATGCAAAGG+TGG | 0.570945 | 3.1:+14218813 | MS.gene50880:CDS |
| CCATCAGGTGCTACAAGTGA+GGG | 0.573090 | 3.1:-14219817 | None:intergenic |
| AAGCCTTTGAGGATAAGACT+TGG | 0.577001 | 3.1:+14218689 | MS.gene50880:CDS |
| CTAAGTAAAGATATTGAACA+TGG | 0.579049 | 3.1:+14218195 | MS.gene50880:CDS |
| TCCATCAGGTGCTACAAGTG+AGG | 0.579360 | 3.1:-14219818 | None:intergenic |
| ATCTTTACACATGCAAAGGT+GGG | 0.580841 | 3.1:+14218814 | MS.gene50880:CDS |
| AATAATAGTAATGTTTGGGA+AGG | 0.582718 | 3.1:+14219265 | MS.gene50880:CDS |
| CCTCCTGAATCATGCAACTT+CGG | 0.584476 | 3.1:+14218294 | MS.gene50880:CDS |
| GCTTGAATGCGCTCAGTGGG+AGG | 0.586107 | 3.1:+14219230 | MS.gene50880:CDS |
| CCTCCAAGTCTTATCCTCAA+AGG | 0.596148 | 3.1:-14218692 | None:intergenic |
| CATGGGTAGGAGAATCTGGC+GGG | 0.596430 | 3.1:+14220201 | MS.gene50880:CDS |
| AGGGATACAAGATTGATGCA+TGG | 0.601095 | 3.1:+14219338 | MS.gene50880:CDS |
| AGGGATCTTTACACATGCAA+AGG | 0.605651 | 3.1:+14218810 | MS.gene50880:CDS |
| AGGTTCTCTGCAAGATCAGG+TGG | 0.606913 | 3.1:+14218712 | MS.gene50880:CDS |
| TTGGCTTGAATGCGCTCAGT+GGG | 0.607356 | 3.1:+14219227 | MS.gene50880:CDS |
| ACTTAGAGTAACTTGAAGAG+AGG | 0.614320 | 3.1:-14218178 | None:intergenic |
| CCTACCCATGCAGAAGCCCA+AGG | 0.632180 | 3.1:-14220188 | None:intergenic |
| GAGCTGAGTGGTACAGGCGT+TGG | 0.639075 | 3.1:+14219706 | MS.gene50880:CDS |
| ATTCAAGCCAAACATTACAA+TGG | 0.640736 | 3.1:-14219215 | None:intergenic |
| ATGACACACATCTTATAGAG+AGG | 0.653973 | 3.1:+14220090 | MS.gene50880:CDS |
| GCATGGGTAGGAGAATCTGG+CGG | 0.658541 | 3.1:+14220200 | MS.gene50880:CDS |
| CCAAAAGGAGAAACAATGCA+AGG | 0.666540 | 3.1:-14218155 | None:intergenic |
| GATCAGGTGGTGTATAACGT+AGG | 0.674477 | 3.1:+14218725 | MS.gene50880:CDS |
| CCGAAGTTGCATGATTCAGG+AGG | 0.677182 | 3.1:-14218294 | None:intergenic |
| TTTGGCTTGAATGCGCTCAG+TGG | 0.677954 | 3.1:+14219226 | MS.gene50880:CDS |
| TCTGGCGGGATATCTAGGAG+TGG | 0.716219 | 3.1:+14220215 | MS.gene50880:CDS |
| TATGCAGGTAATGAGCTGAG+TGG | 0.821182 | 3.1:+14219694 | MS.gene50880:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CACATATAAATTAAATATTA+CGG | + | chr3.1:14220520-14220539 | MS.gene50880:intron | 10.0% |
| !! | TAGAAATAATAGATTATGAA+TGG | - | chr3.1:14220047-14220066 | None:intergenic | 15.0% |
| !! | TAGTAATAATAGTAATGTTT+GGG | + | chr3.1:14219261-14219280 | MS.gene50880:CDS | 15.0% |
| !! | TTAGTAATAATAGTAATGTT+TGG | + | chr3.1:14219260-14219279 | MS.gene50880:CDS | 15.0% |
| !!! | AATCATTTTTTCAATAAAAC+AGG | + | chr3.1:14218845-14218864 | MS.gene50880:CDS | 15.0% |
| !!! | ATCATTTTTTCAATAAAACA+GGG | + | chr3.1:14218846-14218865 | MS.gene50880:CDS | 15.0% |
| !!! | GAATTCTGATTTTTTTATAT+AGG | + | chr3.1:14220334-14220353 | MS.gene50880:intron | 15.0% |
| !!! | TAATGTATTAGTTTGTTTTA+GGG | + | chr3.1:14219403-14219422 | MS.gene50880:intron | 15.0% |
| !!! | TATTCTTTTCATATCATTTT+CGG | + | chr3.1:14218657-14218676 | MS.gene50880:intron | 15.0% |
| !!! | TTAATGTATTAGTTTGTTTT+AGG | + | chr3.1:14219402-14219421 | MS.gene50880:intron | 15.0% |
| !!! | TTCTTTTAAACCAAATAAAA+AGG | + | chr3.1:14218921-14218940 | MS.gene50880:intron | 15.0% |
| !! | ACAATAAACTTTAGTATTGT+AGG | - | chr3.1:14220425-14220444 | None:intergenic | 20.0% |
| !! | ACAATACTAAAGTTTATTGT+AGG | + | chr3.1:14220425-14220444 | MS.gene50880:intron | 20.0% |
| !! | ACTCATCATTTATATAACTT+GGG | + | chr3.1:14219907-14219926 | MS.gene50880:CDS | 20.0% |
| !! | ATAAAATCATAAGCATTTGT+AGG | - | chr3.1:14219301-14219320 | None:intergenic | 20.0% |
| !! | GAACAAAATAGATTATGATT+AGG | - | chr3.1:14219998-14220017 | None:intergenic | 20.0% |
| !! | GATTTATTCAAATTCTACTA+CGG | + | chr3.1:14219572-14219591 | MS.gene50880:intron | 20.0% |
| !! | TAAAATCATAAGCATTTGTA+GGG | - | chr3.1:14219300-14219319 | None:intergenic | 20.0% |
| !!! | AATGTATTAGTTTGTTTTAG+GGG | + | chr3.1:14219404-14219423 | MS.gene50880:intron | 20.0% |
| !!! | ACTTGATATACTTTTATTTG+AGG | + | chr3.1:14220572-14220591 | MS.gene50880:intron | 20.0% |
| !!! | ATTGATTTCATTTTCTATAC+AGG | - | chr3.1:14218378-14218397 | None:intergenic | 20.0% |
| !!! | TATCCGATTTTTAAAAACAT+CGG | - | chr3.1:14218577-14218596 | None:intergenic | 20.0% |
| !!! | TTGAAACTATCCTTTTTATT+TGG | - | chr3.1:14218934-14218953 | None:intergenic | 20.0% |
| !!! | TTTGAAATTTTATGTTTCCT+TGG | + | chr3.1:14218401-14218420 | MS.gene50880:intron | 20.0% |
| !!! | TTTTATTTGAGGATTTATAG+TGG | + | chr3.1:14220583-14220602 | MS.gene50880:intron | 20.0% |
| !!! | TTTTCCTTTTTCTATGTTTT+AGG | + | chr3.1:14220300-14220319 | MS.gene50880:intron | 20.0% |
| ! | AAAAATCAGAATTCTTCGTT+TGG | - | chr3.1:14220328-14220347 | None:intergenic | 25.0% |
| ! | AATAATAGTAATGTTTGGGA+AGG | + | chr3.1:14219265-14219284 | MS.gene50880:CDS | 25.0% |
| ! | AATTGAACAATCACTAAAAC+AGG | - | chr3.1:14218438-14218457 | None:intergenic | 25.0% |
| ! | ACATTCATCTATTGTAACTT+TGG | + | chr3.1:14218332-14218351 | MS.gene50880:CDS | 25.0% |
| ! | ACCTAAAGTCTTCAATTATA+AGG | - | chr3.1:14218971-14218990 | None:intergenic | 25.0% |
| ! | ATAAACTTTAGTATTGTAGG+TGG | - | chr3.1:14220422-14220441 | None:intergenic | 25.0% |
| ! | ATAAAGTACACTGTTTCAAA+GGG | + | chr3.1:14219319-14219338 | MS.gene50880:CDS | 25.0% |
| ! | CATCCATTTCAAAAGATTAA+AGG | + | chr3.1:14218767-14218786 | MS.gene50880:CDS | 25.0% |
| ! | CTAAGTAAAGATATTGAACA+TGG | + | chr3.1:14218195-14218214 | MS.gene50880:CDS | 25.0% |
| ! | GAAAAAGGAAAAGAAAATGA+TGG | - | chr3.1:14220292-14220311 | None:intergenic | 25.0% |
| ! | GACTCATCATTTATATAACT+TGG | + | chr3.1:14219906-14219925 | MS.gene50880:CDS | 25.0% |
| ! | GGTACATATTTACACAAAAT+GGG | - | chr3.1:14219108-14219127 | None:intergenic | 25.0% |
| ! | GTACATATTTACACAAAATG+GGG | - | chr3.1:14219107-14219126 | None:intergenic | 25.0% |
| ! | TAAAGTCTTCAATTATAAGG+AGG | - | chr3.1:14218968-14218987 | None:intergenic | 25.0% |
| ! | TAATTTAGACATACAAACCT+TGG | - | chr3.1:14218514-14218533 | None:intergenic | 25.0% |
| ! | TATAAAGTACACTGTTTCAA+AGG | + | chr3.1:14219318-14219337 | MS.gene50880:CDS | 25.0% |
| ! | TCCTTATAATTGAAGACTTT+AGG | + | chr3.1:14218967-14218986 | MS.gene50880:intron | 25.0% |
| ! | TGGTACATATTTACACAAAA+TGG | - | chr3.1:14219109-14219128 | None:intergenic | 25.0% |
| !! | ACACATTTAGAATTCGTTTA+AGG | - | chr3.1:14219774-14219793 | None:intergenic | 25.0% |
| !!! | AAGATTAAAGGTGGATTTTT+AGG | + | chr3.1:14218779-14218798 | MS.gene50880:CDS | 25.0% |
| !!! | TGACCGATGTTTTTAAAAAT+CGG | + | chr3.1:14218571-14218590 | MS.gene50880:intron | 25.0% |
| !!! | TGTTGATGACATTATTAATG+TGG | + | chr3.1:14218601-14218620 | MS.gene50880:intron | 25.0% |
| AAAAACTGTTACAATAGTGC+AGG | - | chr3.1:14219042-14219061 | None:intergenic | 30.0% | |
| ACATATCTAATCCTAGATTC+TGG | + | chr3.1:14220625-14220644 | MS.gene50880:intron | 30.0% | |
| AGACGTAATCATAATTCTAC+CGG | - | chr3.1:14219157-14219176 | None:intergenic | 30.0% | |
| AGTGATTGTTCAATTGAATG+TGG | + | chr3.1:14218443-14218462 | MS.gene50880:intron | 30.0% | |
| ATGGAAGTTATGATAAGGAA+TGG | + | chr3.1:14219836-14219855 | MS.gene50880:CDS | 30.0% | |
| ATGTACCAAAACAAAGAACT+TGG | + | chr3.1:14219121-14219140 | MS.gene50880:intron | 30.0% | |
| ATTAAAGTTTGACACTTGCA+GGG | + | chr3.1:14219192-14219211 | MS.gene50880:intron | 30.0% | |
| ATTCAAGCCAAACATTACAA+TGG | - | chr3.1:14219218-14219237 | None:intergenic | 30.0% | |
| CCATTTCAAAAGATTAAAGG+TGG | + | chr3.1:14218770-14218789 | MS.gene50880:CDS | 30.0% | |
| GTTGTCAATAACAGTTATAG+CGG | - | chr3.1:14219523-14219542 | None:intergenic | 30.0% | |
| TATTGTAGGCAGTCATTAAT+TGG | + | chr3.1:14220439-14220458 | MS.gene50880:intron | 30.0% | |
| TCAGAAACCATTCAAAAACA+TGG | + | chr3.1:14220164-14220183 | MS.gene50880:CDS | 30.0% | |
| ! | ACACATTTGTGAATAGCTTT+TGG | + | chr3.1:14220255-14220274 | MS.gene50880:intron | 30.0% |
| !! | CCACCTTTAATCTTTTGAAA+TGG | - | chr3.1:14218773-14218792 | None:intergenic | 30.0% |
| !!! | GGATTTTTAGGATTTTCAGA+GGG | + | chr3.1:14218791-14218810 | MS.gene50880:CDS | 30.0% |
| !!! | TGGATTTTTAGGATTTTCAG+AGG | + | chr3.1:14218790-14218809 | MS.gene50880:CDS | 30.0% |
| AAAGTGGGATGAAGATCAAT+TGG | - | chr3.1:14219631-14219650 | None:intergenic | 35.0% | |
| AACAACAGAGAAGACTAAAG+TGG | - | chr3.1:14219647-14219666 | None:intergenic | 35.0% | |
| AAGATTGATGCATGGGAATT+TGG | + | chr3.1:14219346-14219365 | MS.gene50880:CDS | 35.0% | |
| AATAAGCTTCTTCAGCTTTC+TGG | + | chr3.1:14219862-14219881 | MS.gene50880:CDS | 35.0% | |
| ACAACAGAGAAGACTAAAGT+GGG | - | chr3.1:14219646-14219665 | None:intergenic | 35.0% | |
| ACCTGATGGAAGTTATGATA+AGG | + | chr3.1:14219831-14219850 | MS.gene50880:CDS | 35.0% | |
| ACTTAGAGTAACTTGAAGAG+AGG | - | chr3.1:14218181-14218200 | None:intergenic | 35.0% | |
| ATACAAACCTTGGATTGCTT+TGG | - | chr3.1:14218504-14218523 | None:intergenic | 35.0% | |
| ATATTTGAATGACTCGTCGT+AGG | + | chr3.1:14220371-14220390 | MS.gene50880:intron | 35.0% | |
| ATCTTTACACATGCAAAGGT+GGG | + | chr3.1:14218814-14218833 | MS.gene50880:CDS | 35.0% | |
| ATGACACACATCTTATAGAG+AGG | + | chr3.1:14220090-14220109 | MS.gene50880:CDS | 35.0% | |
| CATATGCAATAAGTCCACAT+CGG | - | chr3.1:14219672-14219691 | None:intergenic | 35.0% | |
| CATTCAAAAACATGGTCCTT+GGG | + | chr3.1:14220172-14220191 | MS.gene50880:CDS | 35.0% | |
| CGACGAGTCATTCAAATATT+CGG | - | chr3.1:14220370-14220389 | None:intergenic | 35.0% | |
| CTTATTGCATATGCTTATGC+AGG | + | chr3.1:14219679-14219698 | MS.gene50880:intron | 35.0% | |
| GAATTATGATTACGTCTGGT+AGG | + | chr3.1:14219160-14219179 | MS.gene50880:intron | 35.0% | |
| GATTAAAGTTTGACACTTGC+AGG | + | chr3.1:14219191-14219210 | MS.gene50880:intron | 35.0% | |
| GGCACCTAAAACATAGAAAA+AGG | - | chr3.1:14220307-14220326 | None:intergenic | 35.0% | |
| GGTAGAATTATGATTACGTC+TGG | + | chr3.1:14219156-14219175 | MS.gene50880:intron | 35.0% | |
| GTACTTAGATCAACTTGGAA+TGG | + | chr3.1:14220393-14220412 | MS.gene50880:intron | 35.0% | |
| GTAGGAAAATTAAAGTCTCC+TGG | + | chr3.1:14218743-14218762 | MS.gene50880:CDS | 35.0% | |
| TCATTAATTGGAGGGAACTA+TGG | + | chr3.1:14220451-14220470 | MS.gene50880:intron | 35.0% | |
| TCCTTATCATAACTTCCATC+AGG | - | chr3.1:14219835-14219854 | None:intergenic | 35.0% | |
| ! | AGACCAGTGTTGTTAAATAG+CGG | - | chr3.1:14219605-14219624 | None:intergenic | 35.0% |
| ! | CAAAGAATGTCTGAGATATC+AGG | + | chr3.1:14219071-14219090 | MS.gene50880:intron | 35.0% |
| ! | GACAACATTTTGTTAGCGTA+TGG | + | chr3.1:14219537-14219556 | MS.gene50880:intron | 35.0% |
| !! | CATGGTTTGCTACTAGTAAA+TGG | + | chr3.1:14218213-14218232 | MS.gene50880:CDS | 35.0% |
| !! | GACATCCAAGTTCTTTGTTT+TGG | - | chr3.1:14219129-14219148 | None:intergenic | 35.0% |
| !! | TGAATGTGGATTGATTTTCC+AGG | + | chr3.1:14218457-14218476 | MS.gene50880:intron | 35.0% |
| !!! | ATCTTTTGAAATGGATGACC+AGG | - | chr3.1:14218764-14218783 | None:intergenic | 35.0% |
| !!! | TAGTTTGTTTTAGGGGTTCA+TGG | + | chr3.1:14219411-14219430 | MS.gene50880:intron | 35.0% |
| ACTATAGCATTGTAGCGTAG+TGG | - | chr3.1:14219499-14219518 | None:intergenic | 40.0% | |
| AGGGATACAAGATTGATGCA+TGG | + | chr3.1:14219338-14219357 | MS.gene50880:CDS | 40.0% | |
| AGGGATCTTTACACATGCAA+AGG | + | chr3.1:14218810-14218829 | MS.gene50880:CDS | 40.0% | |
| CATTTATATAACTTGGGCCG+AGG | + | chr3.1:14219913-14219932 | MS.gene50880:CDS | 40.0% | |
| CCAAAAGGAGAAACAATGCA+AGG | - | chr3.1:14218158-14218177 | None:intergenic | 40.0% | |
| CCATTCAAAAACATGGTCCT+TGG | + | chr3.1:14220171-14220190 | MS.gene50880:CDS | 40.0% | |
| CGTAGGTACTTAGATCAACT+TGG | + | chr3.1:14220388-14220407 | MS.gene50880:intron | 40.0% | |
| GAACCGCTATTTAACAACAC+TGG | + | chr3.1:14219599-14219618 | MS.gene50880:intron | 40.0% | |
| GATCTTTACACATGCAAAGG+TGG | + | chr3.1:14218813-14218832 | MS.gene50880:CDS | 40.0% | |
| GGGATACAAGATTGATGCAT+GGG | + | chr3.1:14219339-14219358 | MS.gene50880:CDS | 40.0% | |
| GTAGGCAGTCATTAATTGGA+GGG | + | chr3.1:14220443-14220462 | MS.gene50880:intron | 40.0% | |
| TAACTTGAAGAGAGGCCAAA+AGG | - | chr3.1:14218173-14218192 | None:intergenic | 40.0% | |
| TAATGTTTGGGAAGGAGCTT+GGG | + | chr3.1:14219273-14219292 | MS.gene50880:CDS | 40.0% | |
| TATATGTGCCTGTAGTAGTC+AGG | - | chr3.1:14220508-14220527 | None:intergenic | 40.0% | |
| TCATTTGCGCAACGATTGAT+TGG | + | chr3.1:14218268-14218287 | MS.gene50880:CDS | 40.0% | |
| TCTTATCCTCAAAGGCTTGA+GGG | - | chr3.1:14218687-14218706 | None:intergenic | 40.0% | |
| TGTAGGCAGTCATTAATTGG+AGG | + | chr3.1:14220442-14220461 | MS.gene50880:intron | 40.0% | |
| TGTGAGTGATAAGCAAACCT+CGG | - | chr3.1:14219933-14219952 | None:intergenic | 40.0% | |
| TGTTTGCAGAACCAGAATCT+AGG | - | chr3.1:14220639-14220658 | None:intergenic | 40.0% | |
| TTAGGGGTTCATGGTCTAAA+AGG | + | chr3.1:14219420-14219439 | MS.gene50880:intron | 40.0% | |
| TTCTCTGTTGTTATCCGATG+TGG | + | chr3.1:14219655-14219674 | MS.gene50880:intron | 40.0% | |
| ! | AAGCCTTTGAGGATAAGACT+TGG | + | chr3.1:14218689-14218708 | MS.gene50880:CDS | 40.0% |
| ! | CAACTTCGGCTTTTGTTCTT+GGG | + | chr3.1:14218308-14218327 | MS.gene50880:CDS | 40.0% |
| ! | GTCAGAACATTGATTATGCC+TGG | - | chr3.1:14219889-14219908 | None:intergenic | 40.0% |
| !! | CCAAGGACCATGTTTTTGAA+TGG | - | chr3.1:14220174-14220193 | None:intergenic | 40.0% |
| !! | CCTTGCATTGTTTCTCCTTT+TGG | + | chr3.1:14218155-14218174 | MS.gene50880:CDS | 40.0% |
| AACCTTGGATTGCTTTGGCA+AGG | - | chr3.1:14218499-14218518 | None:intergenic | 45.0% | |
| AAGCCGAAGTTGCATGATTC+AGG | - | chr3.1:14218300-14218319 | None:intergenic | 45.0% | |
| AGAACTTGGATGTCTGTGTC+CGG | + | chr3.1:14219135-14219154 | MS.gene50880:intron | 45.0% | |
| CCTCCTGAATCATGCAACTT+CGG | + | chr3.1:14218294-14218313 | MS.gene50880:CDS | 45.0% | |
| CTCCTAATCCTGACTACTAC+AGG | + | chr3.1:14220497-14220516 | MS.gene50880:intron | 45.0% | |
| CTGATGGGAAAGAAGGTTCT+TGG | + | chr3.1:14220679-14220698 | MS.gene50880:CDS | 45.0% | |
| GATCAGGTGGTGTATAACGT+AGG | + | chr3.1:14218725-14218744 | MS.gene50880:CDS | 45.0% | |
| GTAATGTTTGGGAAGGAGCT+TGG | + | chr3.1:14219272-14219291 | MS.gene50880:CDS | 45.0% | |
| GTCTTATCCTCAAAGGCTTG+AGG | - | chr3.1:14218688-14218707 | None:intergenic | 45.0% | |
| TATGCAGGTAATGAGCTGAG+TGG | + | chr3.1:14219694-14219713 | MS.gene50880:intron | 45.0% | |
| TCCACTTCGCTCAACTTATC+AGG | - | chr3.1:14220125-14220144 | None:intergenic | 45.0% | |
| TGCAGGGCCATTGTAATGTT+TGG | + | chr3.1:14219208-14219227 | MS.gene50880:intron | 45.0% | |
| TGCCTGTAGTAGTCAGGATT+AGG | - | chr3.1:14220502-14220521 | None:intergenic | 45.0% | |
| TTTGCGCAACGATTGATTGG+TGG | + | chr3.1:14218271-14218290 | MS.gene50880:CDS | 45.0% | |
| ! | AACAGGTTAGCTGCTTTCCA+AGG | - | chr3.1:14218421-14218440 | None:intergenic | 45.0% |
| ! | CCTCCAAGTCTTATCCTCAA+AGG | - | chr3.1:14218695-14218714 | None:intergenic | 45.0% |
| ! | CCTTTGAGGATAAGACTTGG+AGG | + | chr3.1:14218692-14218711 | MS.gene50880:CDS | 45.0% |
| ! | GCAACTTCGGCTTTTGTTCT+TGG | + | chr3.1:14218307-14218326 | MS.gene50880:CDS | 45.0% |
| ! | TCCTGATAAGTTGAGCGAAG+TGG | + | chr3.1:14220121-14220140 | MS.gene50880:CDS | 45.0% |
| ACAGCGCACTATTGTGGCAT+CGG | + | chr3.1:14220656-14220675 | MS.gene50880:intron | 50.0% | |
| AGGTTCTCTGCAAGATCAGG+TGG | + | chr3.1:14218712-14218731 | MS.gene50880:CDS | 50.0% | |
| CAGTTGGCGTTGCACAGTAT+GGG | + | chr3.1:14219734-14219753 | MS.gene50880:CDS | 50.0% | |
| CCGAAGTTGCATGATTCAGG+AGG | - | chr3.1:14218297-14218316 | None:intergenic | 50.0% | |
| CTCCTTGCCAAAGCAATCCA+AGG | + | chr3.1:14218494-14218513 | MS.gene50880:CDS | 50.0% | |
| CTGCAAACAGCGCACTATTG+TGG | + | chr3.1:14220650-14220669 | MS.gene50880:intron | 50.0% | |
| GAGAATCTGGCGGGATATCT+AGG | + | chr3.1:14220210-14220229 | MS.gene50880:CDS | 50.0% | |
| GGTAATGAGCTGAGTGGTAC+AGG | + | chr3.1:14219700-14219719 | MS.gene50880:intron | 50.0% | |
| TCAGTTGGCGTTGCACAGTA+TGG | + | chr3.1:14219733-14219752 | MS.gene50880:CDS | 50.0% | |
| TCTGCATGGGTAGGAGAATC+TGG | + | chr3.1:14220197-14220216 | MS.gene50880:CDS | 50.0% | |
| TGGAGGTTCTCTGCAAGATC+AGG | + | chr3.1:14218709-14218728 | MS.gene50880:CDS | 50.0% | |
| TGGATTGCTTTGGCAAGGAG+AGG | - | chr3.1:14218494-14218513 | None:intergenic | 50.0% | |
| ! | CCATCAGGTGCTACAAGTGA+GGG | - | chr3.1:14219820-14219839 | None:intergenic | 50.0% |
| ! | CTTCTTCAGCTTTCTGGTCC+AGG | + | chr3.1:14219868-14219887 | MS.gene50880:CDS | 50.0% |
| ! | TCCATCAGGTGCTACAAGTG+AGG | - | chr3.1:14219821-14219840 | None:intergenic | 50.0% |
| ! | TTGGCTTGAATGCGCTCAGT+GGG | + | chr3.1:14219227-14219246 | MS.gene50880:CDS | 50.0% |
| !! | ACTATTGTGGCATCGGCTGA+TGG | + | chr3.1:14220663-14220682 | MS.gene50880:CDS | 50.0% |
| !! | CTATTGTGGCATCGGCTGAT+GGG | + | chr3.1:14220664-14220683 | MS.gene50880:CDS | 50.0% |
| !! | TTTGGCTTGAATGCGCTCAG+TGG | + | chr3.1:14219226-14219245 | MS.gene50880:CDS | 50.0% |
| AGGATTAGGAGCGAGAGTGG+AGG | - | chr3.1:14220488-14220507 | None:intergenic | 55.0% | |
| ATGGTCCTTGGGCTTCTGCA+TGG | + | chr3.1:14220183-14220202 | MS.gene50880:CDS | 55.0% | |
| CATGGGTAGGAGAATCTGGC+GGG | + | chr3.1:14220201-14220220 | MS.gene50880:CDS | 55.0% | |
| CCCTCACTTGTAGCACCTGA+TGG | + | chr3.1:14219817-14219836 | MS.gene50880:CDS | 55.0% | |
| GCATGGGTAGGAGAATCTGG+CGG | + | chr3.1:14220200-14220219 | MS.gene50880:CDS | 55.0% | |
| GGAGAGGACGAGATAAGTCC+TGG | - | chr3.1:14218478-14218497 | None:intergenic | 55.0% | |
| GGATAGCCCTCAAGCCTTTG+AGG | + | chr3.1:14218678-14218697 | MS.gene50880:intron | 55.0% | |
| GTCAGGATTAGGAGCGAGAG+TGG | - | chr3.1:14220491-14220510 | None:intergenic | 55.0% | |
| TCTGGCGGGATATCTAGGAG+TGG | + | chr3.1:14220215-14220234 | MS.gene50880:CDS | 55.0% | |
| TGGTCCTTGGGCTTCTGCAT+GGG | + | chr3.1:14220184-14220203 | MS.gene50880:CDS | 55.0% | |
| !! | ACAGGCGTTGGTGCATCAGT+TGG | + | chr3.1:14219718-14219737 | MS.gene50880:CDS | 55.0% |
| !! | GCATCGGCTGATGGGAAAGA+AGG | + | chr3.1:14220672-14220691 | MS.gene50880:CDS | 55.0% |
| CCTACCCATGCAGAAGCCCA+AGG | - | chr3.1:14220191-14220210 | None:intergenic | 60.0% | |
| CCTTGGGCTTCTGCATGGGT+AGG | + | chr3.1:14220188-14220207 | MS.gene50880:CDS | 60.0% | |
| GAGCTGAGTGGTACAGGCGT+TGG | + | chr3.1:14219706-14219725 | MS.gene50880:CDS | 60.0% | |
| GCTTGAATGCGCTCAGTGGG+AGG | + | chr3.1:14219230-14219249 | MS.gene50880:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 14218144 | 14220713 | 14218144 | ID=MS.gene50880 |
| chr3.1 | mRNA | 14218144 | 14220713 | 14218144 | ID=MS.gene50880.t1;Parent=MS.gene50880 |
| chr3.1 | exon | 14218144 | 14218353 | 14218144 | ID=MS.gene50880.t1.exon1;Parent=MS.gene50880.t1 |
| chr3.1 | CDS | 14218144 | 14218353 | 14218144 | ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1 |
| chr3.1 | exon | 14218479 | 14218515 | 14218479 | ID=MS.gene50880.t1.exon2;Parent=MS.gene50880.t1 |
| chr3.1 | CDS | 14218479 | 14218515 | 14218479 | ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1 |
| chr3.1 | exon | 14218684 | 14218867 | 14218684 | ID=MS.gene50880.t1.exon3;Parent=MS.gene50880.t1 |
| chr3.1 | CDS | 14218684 | 14218867 | 14218684 | ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1 |
| chr3.1 | exon | 14219213 | 14219367 | 14219213 | ID=MS.gene50880.t1.exon4;Parent=MS.gene50880.t1 |
| chr3.1 | CDS | 14219213 | 14219367 | 14219213 | ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1 |
| chr3.1 | exon | 14219701 | 14219934 | 14219701 | ID=MS.gene50880.t1.exon5;Parent=MS.gene50880.t1 |
| chr3.1 | CDS | 14219701 | 14219934 | 14219701 | ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1 |
| chr3.1 | exon | 14220087 | 14220247 | 14220087 | ID=MS.gene50880.t1.exon6;Parent=MS.gene50880.t1 |
| chr3.1 | CDS | 14220087 | 14220247 | 14220087 | ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1 |
| chr3.1 | exon | 14220660 | 14220713 | 14220660 | ID=MS.gene50880.t1.exon7;Parent=MS.gene50880.t1 |
| chr3.1 | CDS | 14220660 | 14220713 | 14220660 | ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1 |
| Gene Sequence |
| Protein sequence |