AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50880.t1 MTR_3g023700 92.661 327 24 0 1 327 1 327 0.0 632
MS.gene50880.t1 MTR_3g023690 89.908 327 32 1 1 327 1 326 0.0 606
MS.gene50880.t1 MTR_3g023710 79.755 326 64 1 1 324 1 326 0.0 549
MS.gene50880.t1 MTR_4g109300 67.638 309 98 1 19 327 19 325 2.30e-156 450
MS.gene50880.t1 MTR_4g109300 67.638 309 98 1 19 327 19 325 2.46e-156 450
MS.gene50880.t1 MTR_4g109300 60.933 343 98 2 19 327 19 359 3.49e-149 432
MS.gene50880.t1 MTR_3g023690 90.164 183 18 0 145 327 56 238 9.48e-116 342
MS.gene50880.t1 MTR_5g043710 43.605 344 187 2 1 344 1 337 6.74e-102 309
MS.gene50880.t1 MTR_2g451510 45.231 325 170 3 4 324 12 332 9.55e-97 297
MS.gene50880.t1 MTR_4g116070 47.119 295 144 4 25 314 39 326 1.56e-89 278
MS.gene50880.t1 MTR_4g109300 67.033 182 58 1 146 327 1 180 1.16e-82 256
MS.gene50880.t1 MTR_4g116040 41.477 176 98 2 169 344 15 185 1.37e-36 135
MS.gene50880.t1 MTR_4g109260 52.564 78 37 0 229 306 59 136 3.58e-22 91.3
MS.gene50880.t1 MTR_8g091920 34.752 141 46 4 174 307 2 103 3.53e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50880.t1 AT5G07830 56.615 325 136 3 3 326 10 330 1.47e-139 407
MS.gene50880.t1 AT5G61250 57.716 324 133 2 3 326 7 326 6.14e-139 405
MS.gene50880.t1 AT5G61250 57.716 324 133 2 3 326 7 326 6.14e-139 405
MS.gene50880.t1 AT5G61250 57.716 324 133 2 3 326 7 326 6.14e-139 405
MS.gene50880.t1 AT5G34940 46.588 337 170 5 2 334 4 334 2.07e-99 304
MS.gene50880.t1 AT5G34940 45.697 337 173 5 2 334 4 334 1.18e-97 294
MS.gene50880.t1 AT5G34940 47.805 205 101 3 130 334 1 199 9.15e-55 184
MS.gene50880.t1 AT5G34940 38.000 100 58 2 235 334 2 97 1.96e-13 70.5

Find 85 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACATTTAGAATTCGTTTA+AGG 0.175950 3.1:-14219771 None:intergenic
CCTTGCATTGTTTCTCCTTT+TGG 0.187389 3.1:+14218155 MS.gene50880:CDS
AAGATTGATGCATGGGAATT+TGG 0.194764 3.1:+14219346 MS.gene50880:CDS
AATAAGCTTCTTCAGCTTTC+TGG 0.195080 3.1:+14219862 MS.gene50880:CDS
TCCACTTCGCTCAACTTATC+AGG 0.253266 3.1:-14220122 None:intergenic
CATCCATTTCAAAAGATTAA+AGG 0.268863 3.1:+14218767 MS.gene50880:CDS
TGCAGGGCCATTGTAATGTT+TGG 0.294362 3.1:+14219208 MS.gene50880:intron
CATGGTTTGCTACTAGTAAA+TGG 0.313611 3.1:+14218213 MS.gene50880:CDS
TCAGTTGGCGTTGCACAGTA+TGG 0.322032 3.1:+14219733 MS.gene50880:CDS
AAGCCGAAGTTGCATGATTC+AGG 0.328540 3.1:-14218297 None:intergenic
TTAGTAATAATAGTAATGTT+TGG 0.347803 3.1:+14219260 MS.gene50880:CDS
GACTCATCATTTATATAACT+TGG 0.357988 3.1:+14219906 MS.gene50880:CDS
CTTCTTCAGCTTTCTGGTCC+AGG 0.370053 3.1:+14219868 MS.gene50880:CDS
ATAAAATCATAAGCATTTGT+AGG 0.374953 3.1:-14219298 None:intergenic
ACATTCATCTATTGTAACTT+TGG 0.392802 3.1:+14218332 MS.gene50880:CDS
TAGTAATAATAGTAATGTTT+GGG 0.392856 3.1:+14219261 MS.gene50880:CDS
TCATTTGCGCAACGATTGAT+TGG 0.408596 3.1:+14218268 MS.gene50880:CDS
ATACAAACCTTGGATTGCTT+TGG 0.414616 3.1:-14218501 None:intergenic
CTGATGGGAAAGAAGGTTCT+TGG 0.417600 3.1:+14220679 MS.gene50880:CDS
GAGAATCTGGCGGGATATCT+AGG 0.424647 3.1:+14220210 MS.gene50880:CDS
TCTGCATGGGTAGGAGAATC+TGG 0.430566 3.1:+14220197 MS.gene50880:CDS
TAATGTTTGGGAAGGAGCTT+GGG 0.432868 3.1:+14219273 MS.gene50880:CDS
GGATAGCCCTCAAGCCTTTG+AGG 0.434312 3.1:+14218678 MS.gene50880:intron
TATAAAGTACACTGTTTCAA+AGG 0.437179 3.1:+14219318 MS.gene50880:CDS
TGGAGGTTCTCTGCAAGATC+AGG 0.452653 3.1:+14218709 MS.gene50880:CDS
ACTATTGTGGCATCGGCTGA+TGG 0.464644 3.1:+14220663 MS.gene50880:CDS
TCTTATCCTCAAAGGCTTGA+GGG 0.474214 3.1:-14218684 None:intergenic
TAAAATCATAAGCATTTGTA+GGG 0.476533 3.1:-14219297 None:intergenic
GTAATGTTTGGGAAGGAGCT+TGG 0.477806 3.1:+14219272 MS.gene50880:CDS
TAACTTGAAGAGAGGCCAAA+AGG 0.479441 3.1:-14218170 None:intergenic
GGTAATGAGCTGAGTGGTAC+AGG 0.479508 3.1:+14219700 MS.gene50880:intron
TCCTTATCATAACTTCCATC+AGG 0.484905 3.1:-14219832 None:intergenic
ATAAAGTACACTGTTTCAAA+GGG 0.487781 3.1:+14219319 MS.gene50880:CDS
GTCAGAACATTGATTATGCC+TGG 0.496284 3.1:-14219886 None:intergenic
TGGTCCTTGGGCTTCTGCAT+GGG 0.508220 3.1:+14220184 MS.gene50880:CDS
CCTTTGAGGATAAGACTTGG+AGG 0.508884 3.1:+14218692 MS.gene50880:CDS
CCCTCACTTGTAGCACCTGA+TGG 0.511377 3.1:+14219817 MS.gene50880:CDS
CTATTGTGGCATCGGCTGAT+GGG 0.511834 3.1:+14220664 MS.gene50880:CDS
ATGGTCCTTGGGCTTCTGCA+TGG 0.513793 3.1:+14220183 MS.gene50880:CDS
ACCTGATGGAAGTTATGATA+AGG 0.514081 3.1:+14219831 MS.gene50880:CDS
ACTCATCATTTATATAACTT+GGG 0.514313 3.1:+14219907 MS.gene50880:CDS
AACCTTGGATTGCTTTGGCA+AGG 0.518517 3.1:-14218496 None:intergenic
GGGATACAAGATTGATGCAT+GGG 0.521559 3.1:+14219339 MS.gene50880:CDS
GTAGGAAAATTAAAGTCTCC+TGG 0.522183 3.1:+14218743 MS.gene50880:CDS
CTGCAAACAGCGCACTATTG+TGG 0.522677 3.1:+14220650 MS.gene50880:intron
CATTTATATAACTTGGGCCG+AGG 0.527239 3.1:+14219913 MS.gene50880:CDS
TTTGCGCAACGATTGATTGG+TGG 0.534224 3.1:+14218271 MS.gene50880:CDS
CCTTGGGCTTCTGCATGGGT+AGG 0.537885 3.1:+14220188 MS.gene50880:CDS
ACAGGCGTTGGTGCATCAGT+TGG 0.539232 3.1:+14219718 MS.gene50880:CDS
CTCCTTGCCAAAGCAATCCA+AGG 0.539603 3.1:+14218494 MS.gene50880:CDS
ACAGCGCACTATTGTGGCAT+CGG 0.543852 3.1:+14220656 MS.gene50880:intron
GTCTTATCCTCAAAGGCTTG+AGG 0.551318 3.1:-14218685 None:intergenic
GCATCGGCTGATGGGAAAGA+AGG 0.553242 3.1:+14220672 MS.gene50880:CDS
CAGTTGGCGTTGCACAGTAT+GGG 0.563243 3.1:+14219734 MS.gene50880:CDS
TGGATTGCTTTGGCAAGGAG+AGG 0.567029 3.1:-14218491 None:intergenic
CCATTTCAAAAGATTAAAGG+TGG 0.568399 3.1:+14218770 MS.gene50880:CDS
ATGGAAGTTATGATAAGGAA+TGG 0.569045 3.1:+14219836 MS.gene50880:CDS
TCCTGATAAGTTGAGCGAAG+TGG 0.570660 3.1:+14220121 MS.gene50880:CDS
GATCTTTACACATGCAAAGG+TGG 0.570945 3.1:+14218813 MS.gene50880:CDS
CCATCAGGTGCTACAAGTGA+GGG 0.573090 3.1:-14219817 None:intergenic
AAGCCTTTGAGGATAAGACT+TGG 0.577001 3.1:+14218689 MS.gene50880:CDS
CTAAGTAAAGATATTGAACA+TGG 0.579049 3.1:+14218195 MS.gene50880:CDS
TCCATCAGGTGCTACAAGTG+AGG 0.579360 3.1:-14219818 None:intergenic
ATCTTTACACATGCAAAGGT+GGG 0.580841 3.1:+14218814 MS.gene50880:CDS
AATAATAGTAATGTTTGGGA+AGG 0.582718 3.1:+14219265 MS.gene50880:CDS
CCTCCTGAATCATGCAACTT+CGG 0.584476 3.1:+14218294 MS.gene50880:CDS
GCTTGAATGCGCTCAGTGGG+AGG 0.586107 3.1:+14219230 MS.gene50880:CDS
CCTCCAAGTCTTATCCTCAA+AGG 0.596148 3.1:-14218692 None:intergenic
CATGGGTAGGAGAATCTGGC+GGG 0.596430 3.1:+14220201 MS.gene50880:CDS
AGGGATACAAGATTGATGCA+TGG 0.601095 3.1:+14219338 MS.gene50880:CDS
AGGGATCTTTACACATGCAA+AGG 0.605651 3.1:+14218810 MS.gene50880:CDS
AGGTTCTCTGCAAGATCAGG+TGG 0.606913 3.1:+14218712 MS.gene50880:CDS
TTGGCTTGAATGCGCTCAGT+GGG 0.607356 3.1:+14219227 MS.gene50880:CDS
ACTTAGAGTAACTTGAAGAG+AGG 0.614320 3.1:-14218178 None:intergenic
CCTACCCATGCAGAAGCCCA+AGG 0.632180 3.1:-14220188 None:intergenic
GAGCTGAGTGGTACAGGCGT+TGG 0.639075 3.1:+14219706 MS.gene50880:CDS
ATTCAAGCCAAACATTACAA+TGG 0.640736 3.1:-14219215 None:intergenic
ATGACACACATCTTATAGAG+AGG 0.653973 3.1:+14220090 MS.gene50880:CDS
GCATGGGTAGGAGAATCTGG+CGG 0.658541 3.1:+14220200 MS.gene50880:CDS
CCAAAAGGAGAAACAATGCA+AGG 0.666540 3.1:-14218155 None:intergenic
GATCAGGTGGTGTATAACGT+AGG 0.674477 3.1:+14218725 MS.gene50880:CDS
CCGAAGTTGCATGATTCAGG+AGG 0.677182 3.1:-14218294 None:intergenic
TTTGGCTTGAATGCGCTCAG+TGG 0.677954 3.1:+14219226 MS.gene50880:CDS
TCTGGCGGGATATCTAGGAG+TGG 0.716219 3.1:+14220215 MS.gene50880:CDS
TATGCAGGTAATGAGCTGAG+TGG 0.821182 3.1:+14219694 MS.gene50880:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CACATATAAATTAAATATTA+CGG + chr3.1:14220520-14220539 MS.gene50880:intron 10.0%
!! TAGAAATAATAGATTATGAA+TGG - chr3.1:14220047-14220066 None:intergenic 15.0%
!! TAGTAATAATAGTAATGTTT+GGG + chr3.1:14219261-14219280 MS.gene50880:CDS 15.0%
!! TTAGTAATAATAGTAATGTT+TGG + chr3.1:14219260-14219279 MS.gene50880:CDS 15.0%
!!! AATCATTTTTTCAATAAAAC+AGG + chr3.1:14218845-14218864 MS.gene50880:CDS 15.0%
!!! ATCATTTTTTCAATAAAACA+GGG + chr3.1:14218846-14218865 MS.gene50880:CDS 15.0%
!!! GAATTCTGATTTTTTTATAT+AGG + chr3.1:14220334-14220353 MS.gene50880:intron 15.0%
!!! TAATGTATTAGTTTGTTTTA+GGG + chr3.1:14219403-14219422 MS.gene50880:intron 15.0%
!!! TATTCTTTTCATATCATTTT+CGG + chr3.1:14218657-14218676 MS.gene50880:intron 15.0%
!!! TTAATGTATTAGTTTGTTTT+AGG + chr3.1:14219402-14219421 MS.gene50880:intron 15.0%
!!! TTCTTTTAAACCAAATAAAA+AGG + chr3.1:14218921-14218940 MS.gene50880:intron 15.0%
!! ACAATAAACTTTAGTATTGT+AGG - chr3.1:14220425-14220444 None:intergenic 20.0%
!! ACAATACTAAAGTTTATTGT+AGG + chr3.1:14220425-14220444 MS.gene50880:intron 20.0%
!! ACTCATCATTTATATAACTT+GGG + chr3.1:14219907-14219926 MS.gene50880:CDS 20.0%
!! ATAAAATCATAAGCATTTGT+AGG - chr3.1:14219301-14219320 None:intergenic 20.0%
!! GAACAAAATAGATTATGATT+AGG - chr3.1:14219998-14220017 None:intergenic 20.0%
!! GATTTATTCAAATTCTACTA+CGG + chr3.1:14219572-14219591 MS.gene50880:intron 20.0%
!! TAAAATCATAAGCATTTGTA+GGG - chr3.1:14219300-14219319 None:intergenic 20.0%
!!! AATGTATTAGTTTGTTTTAG+GGG + chr3.1:14219404-14219423 MS.gene50880:intron 20.0%
!!! ACTTGATATACTTTTATTTG+AGG + chr3.1:14220572-14220591 MS.gene50880:intron 20.0%
!!! ATTGATTTCATTTTCTATAC+AGG - chr3.1:14218378-14218397 None:intergenic 20.0%
!!! TATCCGATTTTTAAAAACAT+CGG - chr3.1:14218577-14218596 None:intergenic 20.0%
!!! TTGAAACTATCCTTTTTATT+TGG - chr3.1:14218934-14218953 None:intergenic 20.0%
!!! TTTGAAATTTTATGTTTCCT+TGG + chr3.1:14218401-14218420 MS.gene50880:intron 20.0%
!!! TTTTATTTGAGGATTTATAG+TGG + chr3.1:14220583-14220602 MS.gene50880:intron 20.0%
!!! TTTTCCTTTTTCTATGTTTT+AGG + chr3.1:14220300-14220319 MS.gene50880:intron 20.0%
! AAAAATCAGAATTCTTCGTT+TGG - chr3.1:14220328-14220347 None:intergenic 25.0%
! AATAATAGTAATGTTTGGGA+AGG + chr3.1:14219265-14219284 MS.gene50880:CDS 25.0%
! AATTGAACAATCACTAAAAC+AGG - chr3.1:14218438-14218457 None:intergenic 25.0%
! ACATTCATCTATTGTAACTT+TGG + chr3.1:14218332-14218351 MS.gene50880:CDS 25.0%
! ACCTAAAGTCTTCAATTATA+AGG - chr3.1:14218971-14218990 None:intergenic 25.0%
! ATAAACTTTAGTATTGTAGG+TGG - chr3.1:14220422-14220441 None:intergenic 25.0%
! ATAAAGTACACTGTTTCAAA+GGG + chr3.1:14219319-14219338 MS.gene50880:CDS 25.0%
! CATCCATTTCAAAAGATTAA+AGG + chr3.1:14218767-14218786 MS.gene50880:CDS 25.0%
! CTAAGTAAAGATATTGAACA+TGG + chr3.1:14218195-14218214 MS.gene50880:CDS 25.0%
! GAAAAAGGAAAAGAAAATGA+TGG - chr3.1:14220292-14220311 None:intergenic 25.0%
! GACTCATCATTTATATAACT+TGG + chr3.1:14219906-14219925 MS.gene50880:CDS 25.0%
! GGTACATATTTACACAAAAT+GGG - chr3.1:14219108-14219127 None:intergenic 25.0%
! GTACATATTTACACAAAATG+GGG - chr3.1:14219107-14219126 None:intergenic 25.0%
! TAAAGTCTTCAATTATAAGG+AGG - chr3.1:14218968-14218987 None:intergenic 25.0%
! TAATTTAGACATACAAACCT+TGG - chr3.1:14218514-14218533 None:intergenic 25.0%
! TATAAAGTACACTGTTTCAA+AGG + chr3.1:14219318-14219337 MS.gene50880:CDS 25.0%
! TCCTTATAATTGAAGACTTT+AGG + chr3.1:14218967-14218986 MS.gene50880:intron 25.0%
! TGGTACATATTTACACAAAA+TGG - chr3.1:14219109-14219128 None:intergenic 25.0%
!! ACACATTTAGAATTCGTTTA+AGG - chr3.1:14219774-14219793 None:intergenic 25.0%
!!! AAGATTAAAGGTGGATTTTT+AGG + chr3.1:14218779-14218798 MS.gene50880:CDS 25.0%
!!! TGACCGATGTTTTTAAAAAT+CGG + chr3.1:14218571-14218590 MS.gene50880:intron 25.0%
!!! TGTTGATGACATTATTAATG+TGG + chr3.1:14218601-14218620 MS.gene50880:intron 25.0%
AAAAACTGTTACAATAGTGC+AGG - chr3.1:14219042-14219061 None:intergenic 30.0%
ACATATCTAATCCTAGATTC+TGG + chr3.1:14220625-14220644 MS.gene50880:intron 30.0%
AGACGTAATCATAATTCTAC+CGG - chr3.1:14219157-14219176 None:intergenic 30.0%
AGTGATTGTTCAATTGAATG+TGG + chr3.1:14218443-14218462 MS.gene50880:intron 30.0%
ATGGAAGTTATGATAAGGAA+TGG + chr3.1:14219836-14219855 MS.gene50880:CDS 30.0%
ATGTACCAAAACAAAGAACT+TGG + chr3.1:14219121-14219140 MS.gene50880:intron 30.0%
ATTAAAGTTTGACACTTGCA+GGG + chr3.1:14219192-14219211 MS.gene50880:intron 30.0%
ATTCAAGCCAAACATTACAA+TGG - chr3.1:14219218-14219237 None:intergenic 30.0%
CCATTTCAAAAGATTAAAGG+TGG + chr3.1:14218770-14218789 MS.gene50880:CDS 30.0%
GTTGTCAATAACAGTTATAG+CGG - chr3.1:14219523-14219542 None:intergenic 30.0%
TATTGTAGGCAGTCATTAAT+TGG + chr3.1:14220439-14220458 MS.gene50880:intron 30.0%
TCAGAAACCATTCAAAAACA+TGG + chr3.1:14220164-14220183 MS.gene50880:CDS 30.0%
! ACACATTTGTGAATAGCTTT+TGG + chr3.1:14220255-14220274 MS.gene50880:intron 30.0%
!! CCACCTTTAATCTTTTGAAA+TGG - chr3.1:14218773-14218792 None:intergenic 30.0%
!!! GGATTTTTAGGATTTTCAGA+GGG + chr3.1:14218791-14218810 MS.gene50880:CDS 30.0%
!!! TGGATTTTTAGGATTTTCAG+AGG + chr3.1:14218790-14218809 MS.gene50880:CDS 30.0%
AAAGTGGGATGAAGATCAAT+TGG - chr3.1:14219631-14219650 None:intergenic 35.0%
AACAACAGAGAAGACTAAAG+TGG - chr3.1:14219647-14219666 None:intergenic 35.0%
AAGATTGATGCATGGGAATT+TGG + chr3.1:14219346-14219365 MS.gene50880:CDS 35.0%
AATAAGCTTCTTCAGCTTTC+TGG + chr3.1:14219862-14219881 MS.gene50880:CDS 35.0%
ACAACAGAGAAGACTAAAGT+GGG - chr3.1:14219646-14219665 None:intergenic 35.0%
ACCTGATGGAAGTTATGATA+AGG + chr3.1:14219831-14219850 MS.gene50880:CDS 35.0%
ACTTAGAGTAACTTGAAGAG+AGG - chr3.1:14218181-14218200 None:intergenic 35.0%
ATACAAACCTTGGATTGCTT+TGG - chr3.1:14218504-14218523 None:intergenic 35.0%
ATATTTGAATGACTCGTCGT+AGG + chr3.1:14220371-14220390 MS.gene50880:intron 35.0%
ATCTTTACACATGCAAAGGT+GGG + chr3.1:14218814-14218833 MS.gene50880:CDS 35.0%
ATGACACACATCTTATAGAG+AGG + chr3.1:14220090-14220109 MS.gene50880:CDS 35.0%
CATATGCAATAAGTCCACAT+CGG - chr3.1:14219672-14219691 None:intergenic 35.0%
CATTCAAAAACATGGTCCTT+GGG + chr3.1:14220172-14220191 MS.gene50880:CDS 35.0%
CGACGAGTCATTCAAATATT+CGG - chr3.1:14220370-14220389 None:intergenic 35.0%
CTTATTGCATATGCTTATGC+AGG + chr3.1:14219679-14219698 MS.gene50880:intron 35.0%
GAATTATGATTACGTCTGGT+AGG + chr3.1:14219160-14219179 MS.gene50880:intron 35.0%
GATTAAAGTTTGACACTTGC+AGG + chr3.1:14219191-14219210 MS.gene50880:intron 35.0%
GGCACCTAAAACATAGAAAA+AGG - chr3.1:14220307-14220326 None:intergenic 35.0%
GGTAGAATTATGATTACGTC+TGG + chr3.1:14219156-14219175 MS.gene50880:intron 35.0%
GTACTTAGATCAACTTGGAA+TGG + chr3.1:14220393-14220412 MS.gene50880:intron 35.0%
GTAGGAAAATTAAAGTCTCC+TGG + chr3.1:14218743-14218762 MS.gene50880:CDS 35.0%
TCATTAATTGGAGGGAACTA+TGG + chr3.1:14220451-14220470 MS.gene50880:intron 35.0%
TCCTTATCATAACTTCCATC+AGG - chr3.1:14219835-14219854 None:intergenic 35.0%
! AGACCAGTGTTGTTAAATAG+CGG - chr3.1:14219605-14219624 None:intergenic 35.0%
! CAAAGAATGTCTGAGATATC+AGG + chr3.1:14219071-14219090 MS.gene50880:intron 35.0%
! GACAACATTTTGTTAGCGTA+TGG + chr3.1:14219537-14219556 MS.gene50880:intron 35.0%
!! CATGGTTTGCTACTAGTAAA+TGG + chr3.1:14218213-14218232 MS.gene50880:CDS 35.0%
!! GACATCCAAGTTCTTTGTTT+TGG - chr3.1:14219129-14219148 None:intergenic 35.0%
!! TGAATGTGGATTGATTTTCC+AGG + chr3.1:14218457-14218476 MS.gene50880:intron 35.0%
!!! ATCTTTTGAAATGGATGACC+AGG - chr3.1:14218764-14218783 None:intergenic 35.0%
!!! TAGTTTGTTTTAGGGGTTCA+TGG + chr3.1:14219411-14219430 MS.gene50880:intron 35.0%
ACTATAGCATTGTAGCGTAG+TGG - chr3.1:14219499-14219518 None:intergenic 40.0%
AGGGATACAAGATTGATGCA+TGG + chr3.1:14219338-14219357 MS.gene50880:CDS 40.0%
AGGGATCTTTACACATGCAA+AGG + chr3.1:14218810-14218829 MS.gene50880:CDS 40.0%
CATTTATATAACTTGGGCCG+AGG + chr3.1:14219913-14219932 MS.gene50880:CDS 40.0%
CCAAAAGGAGAAACAATGCA+AGG - chr3.1:14218158-14218177 None:intergenic 40.0%
CCATTCAAAAACATGGTCCT+TGG + chr3.1:14220171-14220190 MS.gene50880:CDS 40.0%
CGTAGGTACTTAGATCAACT+TGG + chr3.1:14220388-14220407 MS.gene50880:intron 40.0%
GAACCGCTATTTAACAACAC+TGG + chr3.1:14219599-14219618 MS.gene50880:intron 40.0%
GATCTTTACACATGCAAAGG+TGG + chr3.1:14218813-14218832 MS.gene50880:CDS 40.0%
GGGATACAAGATTGATGCAT+GGG + chr3.1:14219339-14219358 MS.gene50880:CDS 40.0%
GTAGGCAGTCATTAATTGGA+GGG + chr3.1:14220443-14220462 MS.gene50880:intron 40.0%
TAACTTGAAGAGAGGCCAAA+AGG - chr3.1:14218173-14218192 None:intergenic 40.0%
TAATGTTTGGGAAGGAGCTT+GGG + chr3.1:14219273-14219292 MS.gene50880:CDS 40.0%
TATATGTGCCTGTAGTAGTC+AGG - chr3.1:14220508-14220527 None:intergenic 40.0%
TCATTTGCGCAACGATTGAT+TGG + chr3.1:14218268-14218287 MS.gene50880:CDS 40.0%
TCTTATCCTCAAAGGCTTGA+GGG - chr3.1:14218687-14218706 None:intergenic 40.0%
TGTAGGCAGTCATTAATTGG+AGG + chr3.1:14220442-14220461 MS.gene50880:intron 40.0%
TGTGAGTGATAAGCAAACCT+CGG - chr3.1:14219933-14219952 None:intergenic 40.0%
TGTTTGCAGAACCAGAATCT+AGG - chr3.1:14220639-14220658 None:intergenic 40.0%
TTAGGGGTTCATGGTCTAAA+AGG + chr3.1:14219420-14219439 MS.gene50880:intron 40.0%
TTCTCTGTTGTTATCCGATG+TGG + chr3.1:14219655-14219674 MS.gene50880:intron 40.0%
! AAGCCTTTGAGGATAAGACT+TGG + chr3.1:14218689-14218708 MS.gene50880:CDS 40.0%
! CAACTTCGGCTTTTGTTCTT+GGG + chr3.1:14218308-14218327 MS.gene50880:CDS 40.0%
! GTCAGAACATTGATTATGCC+TGG - chr3.1:14219889-14219908 None:intergenic 40.0%
!! CCAAGGACCATGTTTTTGAA+TGG - chr3.1:14220174-14220193 None:intergenic 40.0%
!! CCTTGCATTGTTTCTCCTTT+TGG + chr3.1:14218155-14218174 MS.gene50880:CDS 40.0%
AACCTTGGATTGCTTTGGCA+AGG - chr3.1:14218499-14218518 None:intergenic 45.0%
AAGCCGAAGTTGCATGATTC+AGG - chr3.1:14218300-14218319 None:intergenic 45.0%
AGAACTTGGATGTCTGTGTC+CGG + chr3.1:14219135-14219154 MS.gene50880:intron 45.0%
CCTCCTGAATCATGCAACTT+CGG + chr3.1:14218294-14218313 MS.gene50880:CDS 45.0%
CTCCTAATCCTGACTACTAC+AGG + chr3.1:14220497-14220516 MS.gene50880:intron 45.0%
CTGATGGGAAAGAAGGTTCT+TGG + chr3.1:14220679-14220698 MS.gene50880:CDS 45.0%
GATCAGGTGGTGTATAACGT+AGG + chr3.1:14218725-14218744 MS.gene50880:CDS 45.0%
GTAATGTTTGGGAAGGAGCT+TGG + chr3.1:14219272-14219291 MS.gene50880:CDS 45.0%
GTCTTATCCTCAAAGGCTTG+AGG - chr3.1:14218688-14218707 None:intergenic 45.0%
TATGCAGGTAATGAGCTGAG+TGG + chr3.1:14219694-14219713 MS.gene50880:intron 45.0%
TCCACTTCGCTCAACTTATC+AGG - chr3.1:14220125-14220144 None:intergenic 45.0%
TGCAGGGCCATTGTAATGTT+TGG + chr3.1:14219208-14219227 MS.gene50880:intron 45.0%
TGCCTGTAGTAGTCAGGATT+AGG - chr3.1:14220502-14220521 None:intergenic 45.0%
TTTGCGCAACGATTGATTGG+TGG + chr3.1:14218271-14218290 MS.gene50880:CDS 45.0%
! AACAGGTTAGCTGCTTTCCA+AGG - chr3.1:14218421-14218440 None:intergenic 45.0%
! CCTCCAAGTCTTATCCTCAA+AGG - chr3.1:14218695-14218714 None:intergenic 45.0%
! CCTTTGAGGATAAGACTTGG+AGG + chr3.1:14218692-14218711 MS.gene50880:CDS 45.0%
! GCAACTTCGGCTTTTGTTCT+TGG + chr3.1:14218307-14218326 MS.gene50880:CDS 45.0%
! TCCTGATAAGTTGAGCGAAG+TGG + chr3.1:14220121-14220140 MS.gene50880:CDS 45.0%
ACAGCGCACTATTGTGGCAT+CGG + chr3.1:14220656-14220675 MS.gene50880:intron 50.0%
AGGTTCTCTGCAAGATCAGG+TGG + chr3.1:14218712-14218731 MS.gene50880:CDS 50.0%
CAGTTGGCGTTGCACAGTAT+GGG + chr3.1:14219734-14219753 MS.gene50880:CDS 50.0%
CCGAAGTTGCATGATTCAGG+AGG - chr3.1:14218297-14218316 None:intergenic 50.0%
CTCCTTGCCAAAGCAATCCA+AGG + chr3.1:14218494-14218513 MS.gene50880:CDS 50.0%
CTGCAAACAGCGCACTATTG+TGG + chr3.1:14220650-14220669 MS.gene50880:intron 50.0%
GAGAATCTGGCGGGATATCT+AGG + chr3.1:14220210-14220229 MS.gene50880:CDS 50.0%
GGTAATGAGCTGAGTGGTAC+AGG + chr3.1:14219700-14219719 MS.gene50880:intron 50.0%
TCAGTTGGCGTTGCACAGTA+TGG + chr3.1:14219733-14219752 MS.gene50880:CDS 50.0%
TCTGCATGGGTAGGAGAATC+TGG + chr3.1:14220197-14220216 MS.gene50880:CDS 50.0%
TGGAGGTTCTCTGCAAGATC+AGG + chr3.1:14218709-14218728 MS.gene50880:CDS 50.0%
TGGATTGCTTTGGCAAGGAG+AGG - chr3.1:14218494-14218513 None:intergenic 50.0%
! CCATCAGGTGCTACAAGTGA+GGG - chr3.1:14219820-14219839 None:intergenic 50.0%
! CTTCTTCAGCTTTCTGGTCC+AGG + chr3.1:14219868-14219887 MS.gene50880:CDS 50.0%
! TCCATCAGGTGCTACAAGTG+AGG - chr3.1:14219821-14219840 None:intergenic 50.0%
! TTGGCTTGAATGCGCTCAGT+GGG + chr3.1:14219227-14219246 MS.gene50880:CDS 50.0%
!! ACTATTGTGGCATCGGCTGA+TGG + chr3.1:14220663-14220682 MS.gene50880:CDS 50.0%
!! CTATTGTGGCATCGGCTGAT+GGG + chr3.1:14220664-14220683 MS.gene50880:CDS 50.0%
!! TTTGGCTTGAATGCGCTCAG+TGG + chr3.1:14219226-14219245 MS.gene50880:CDS 50.0%
AGGATTAGGAGCGAGAGTGG+AGG - chr3.1:14220488-14220507 None:intergenic 55.0%
ATGGTCCTTGGGCTTCTGCA+TGG + chr3.1:14220183-14220202 MS.gene50880:CDS 55.0%
CATGGGTAGGAGAATCTGGC+GGG + chr3.1:14220201-14220220 MS.gene50880:CDS 55.0%
CCCTCACTTGTAGCACCTGA+TGG + chr3.1:14219817-14219836 MS.gene50880:CDS 55.0%
GCATGGGTAGGAGAATCTGG+CGG + chr3.1:14220200-14220219 MS.gene50880:CDS 55.0%
GGAGAGGACGAGATAAGTCC+TGG - chr3.1:14218478-14218497 None:intergenic 55.0%
GGATAGCCCTCAAGCCTTTG+AGG + chr3.1:14218678-14218697 MS.gene50880:intron 55.0%
GTCAGGATTAGGAGCGAGAG+TGG - chr3.1:14220491-14220510 None:intergenic 55.0%
TCTGGCGGGATATCTAGGAG+TGG + chr3.1:14220215-14220234 MS.gene50880:CDS 55.0%
TGGTCCTTGGGCTTCTGCAT+GGG + chr3.1:14220184-14220203 MS.gene50880:CDS 55.0%
!! ACAGGCGTTGGTGCATCAGT+TGG + chr3.1:14219718-14219737 MS.gene50880:CDS 55.0%
!! GCATCGGCTGATGGGAAAGA+AGG + chr3.1:14220672-14220691 MS.gene50880:CDS 55.0%
CCTACCCATGCAGAAGCCCA+AGG - chr3.1:14220191-14220210 None:intergenic 60.0%
CCTTGGGCTTCTGCATGGGT+AGG + chr3.1:14220188-14220207 MS.gene50880:CDS 60.0%
GAGCTGAGTGGTACAGGCGT+TGG + chr3.1:14219706-14219725 MS.gene50880:CDS 60.0%
GCTTGAATGCGCTCAGTGGG+AGG + chr3.1:14219230-14219249 MS.gene50880:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 14218144 14220713 14218144 ID=MS.gene50880
chr3.1 mRNA 14218144 14220713 14218144 ID=MS.gene50880.t1;Parent=MS.gene50880
chr3.1 exon 14218144 14218353 14218144 ID=MS.gene50880.t1.exon1;Parent=MS.gene50880.t1
chr3.1 CDS 14218144 14218353 14218144 ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1
chr3.1 exon 14218479 14218515 14218479 ID=MS.gene50880.t1.exon2;Parent=MS.gene50880.t1
chr3.1 CDS 14218479 14218515 14218479 ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1
chr3.1 exon 14218684 14218867 14218684 ID=MS.gene50880.t1.exon3;Parent=MS.gene50880.t1
chr3.1 CDS 14218684 14218867 14218684 ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1
chr3.1 exon 14219213 14219367 14219213 ID=MS.gene50880.t1.exon4;Parent=MS.gene50880.t1
chr3.1 CDS 14219213 14219367 14219213 ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1
chr3.1 exon 14219701 14219934 14219701 ID=MS.gene50880.t1.exon5;Parent=MS.gene50880.t1
chr3.1 CDS 14219701 14219934 14219701 ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1
chr3.1 exon 14220087 14220247 14220087 ID=MS.gene50880.t1.exon6;Parent=MS.gene50880.t1
chr3.1 CDS 14220087 14220247 14220087 ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1
chr3.1 exon 14220660 14220713 14220660 ID=MS.gene50880.t1.exon7;Parent=MS.gene50880.t1
chr3.1 CDS 14220660 14220713 14220660 ID=cds.MS.gene50880.t1;Parent=MS.gene50880.t1
Gene Sequence

>MS.gene50880

ATGAGACTCTACCTTGCATTGTTTCTCCTTTTGGCCTCTCTTCAAGTTACTCTAAGTAAAGATATTGAACATGGTTTGCTACTAGTAAATGGAGCTCAAGCAAAAGCTGAAACAGATGATAACTTCATTTGCGCAACGATTGATTGGTGGCCTCCTGAATCATGCAACTTCGGCTTTTGTTCTTGGGCACATTCATCTATTGTAACTTTGGTGCGTATTTTTAGATTTTCACCTGTATAGAAAATGAAATCAATGCTTTTGAAATTTTATGTTTCCTTGGAAAGCAGCTAACCTGTTTTAGTGATTGTTCAATTGAATGTGGATTGATTTTCCAGGACTTATCTCGTCCTCTCCTTGCCAAAGCAATCCAAGGTTTGTATGTCTAAATTACTTAAATGTATATGATTTAGATAATTTGTTAGTTTTATGACCGATGTTTTTAAAAATCGGATAACTTTGTTGATGACATTATTAATGTGGCTGCATGAAGTTTAAATGTATTAAGCATAATGTTATTCTTTTCATATCATTTTCGGATAGCCCTCAAGCCTTTGAGGATAAGACTTGGAGGTTCTCTGCAAGATCAGGTGGTGTATAACGTAGGAAAATTAAAGTCTCCTGGTCATCCATTTCAAAAGATTAAAGGTGGATTTTTAGGATTTTCAGAGGGATCTTTACACATGCAAAGGTGGGATGAGCTGAATCATTTTTTCAATAAAACAGGGTGAGAATCTGATCATTATATTTGTTATTATCTTCTCATTTTTTCACTTTCTCTTCTTTTAAACCAAATAAAAAGGATAGTTTCAATTCAGTGCTTTCCTCCTTATAATTGAAGACTTTAGGTGATTTACTTATTTTGTTATTTGAATTGATTCAATGTGTTGTCTTCTATCCTGCACTATTGTAACAGTTTTTGTTAGTTTACAAAGAATGTCTGAGATATCAGGATGTGATCGACCCCATTTTGTGTAAATATGTACCAAAACAAAGAACTTGGATGTCTGTGTCCGGTAGAATTATGATTACGTCTGGTAGGAGTAACTTGATTAAAGTTTGACACTTGCAGGGCCATTGTAATGTTTGGCTTGAATGCGCTCAGTGGGAGGCACAAGATTAGTAATAATAGTAATGTTTGGGAAGGAGCTTGGGACCCTACAAATGCTTATGATTTTATAAAGTACACTGTTTCAAAGGGATACAAGATTGATGCATGGGAATTTGGTATGACAATAGACAAAGTAGTTTGTTATTTTCGTTAATGTATTAGTTTGTTTTAGGGGTTCATGGTCTAAAAGGTCTAAACAGTGTTGTAAATCGCAGATCGCATAAAATAGCGATTCATTCAAATTCCACTACGCTACAATGCTATAGTGCCGCTATAACTGTTATTGACAACATTTTGTTAGCGTATGGCGAAACAATAGCGATTTATTCAAATTCTACTACGGTATAGAACCGCTATTTAACAACACTGGTCTAAACCAATTGATCTTCATCCCACTTTAGTCTTCTCTGTTGTTATCCGATGTGGACTTATTGCATATGCTTATGCAGGTAATGAGCTGAGTGGTACAGGCGTTGGTGCATCAGTTGGCGTTGCACAGTATGGGAAAGACGTGATAAACCTTAAACGAATTCTAAATGTGTTATACAAGAACTCGAAGTTCAAACCCTCACTTGTAGCACCTGATGGAAGTTATGATAAGGAATGGCACAATAAGCTTCTTCAGCTTTCTGGTCCAGGCATAATCAATGTTCTGACTCATCATTTATATAACTTGGGCCGAGGTTTGCTTATCACTCACATAATTCTTTCTAGTATAGTCGATTTCACAGAATATCTAATATCCTAATCATAATCTATTTTGTTCACTTGCATATAAAATACTATTGTCTACCATTCATAATCTATTATTTCTAAGTTAATTTCTCTTTTTCAGCTAATGACACACATCTTATAGAGAGGATTTTAGATCCTGATAAGTTGAGCGAAGTGGAAACAACTTTCAGAAATCTTTCAGAAACCATTCAAAAACATGGTCCTTGGGCTTCTGCATGGGTAGGAGAATCTGGCGGGATATCTAGGAGTGGCAGTCGTGATGTATCTAACACATTTGTGAATAGCTTTTGGTAATATTGATTCCATCATTTTCTTTTCCTTTTTCTATGTTTTAGGTGCCAAACGAAGAATTCTGATTTTTTTATATAGGATGTGCTTAACCGAATATTTGAATGACTCGTCGTAGGTACTTAGATCAACTTGGAATGGCATCCACCTACAATACTAAAGTTTATTGTAGGCAGTCATTAATTGGAGGGAACTATGGTCTTCTCAATACCTCCACTCTCGCTCCTAATCCTGACTACTACAGGCACATATAAATTAAATATTACGGAAATTTTTTTTTTTAGAGACTAATAGATAACTTGATATACTTTTATTTGAGGATTTATAGTGGTAATGCATGTCATTGTTAAACATATCTAATCCTAGATTCTGGTTCTGCAAACAGCGCACTATTGTGGCATCGGCTGATGGGAAAGAAGGTTCTTGGTATTTCGAGTGA

Protein sequence

>MS.gene50880.t1

MRLYLALFLLLASLQVTLSKDIEHGLLLVNGAQAKAETDDNFICATIDWWPPESCNFGFCSWAHSSIVTLDLSRPLLAKAIQALKPLRIRLGGSLQDQVVYNVGKLKSPGHPFQKIKGGFLGFSEGSLHMQRWDELNHFFNKTGAIVMFGLNALSGRHKISNNSNVWEGAWDPTNAYDFIKYTVSKGYKIDAWEFGNELSGTGVGASVGVAQYGKDVINLKRILNVLYKNSKFKPSLVAPDGSYDKEWHNKLLQLSGPGIINVLTHHLYNLGRANDTHLIERILDPDKLSEVETTFRNLSETIQKHGPWASAWVGESGGISRSGSRDRTIVASADGKEGSWYFE