AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52073

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52073.t1 MTR_4g073730 96.012 326 13 0 1 326 1 326 0.0 642
MS.gene52073.t1 MTR_4g073730 96.528 288 10 0 1 288 1 288 0.0 571
MS.gene52073.t1 MTR_1g025420 53.292 319 133 5 5 309 4 320 3.01e-112 328
MS.gene52073.t1 MTR_8g037890 62.449 245 83 3 5 248 11 247 9.30e-111 325
MS.gene52073.t1 MTR_8g056820 62.449 245 83 3 5 248 11 247 3.75e-108 316
MS.gene52073.t1 MTR_1g025420 61.847 249 92 3 5 252 4 250 9.50e-108 315
MS.gene52073.t1 MTR_5g022310 55.034 298 119 5 3 298 6 290 2.75e-107 315
MS.gene52073.t1 MTR_5g022310 61.600 250 92 3 3 250 6 253 1.56e-106 311
MS.gene52073.t1 MTR_8g075550 64.378 233 78 3 19 247 22 253 4.31e-103 305
MS.gene52073.t1 MTR_3g114030 63.203 231 83 2 19 248 1 230 4.44e-103 302
MS.gene52073.t1 MTR_4g073720 55.510 245 99 4 5 247 3 239 1.45e-89 271
MS.gene52073.t1 MTR_5g022350 55.918 245 90 5 5 249 18 244 1.41e-87 265
MS.gene52073.t1 MTR_8g075510 53.846 247 98 6 3 248 13 244 1.67e-84 255
MS.gene52073.t1 MTR_8g075510 53.659 246 98 6 3 247 13 243 2.07e-83 254
MS.gene52073.t1 MTR_2g067980 51.190 252 114 5 1 248 1 247 1.38e-78 259
MS.gene52073.t1 MTR_7g102380 52.036 221 101 4 29 248 25 241 2.32e-77 237
MS.gene52073.t1 MTR_8g036215 52.321 237 108 4 11 247 6 237 5.91e-77 236
MS.gene52073.t1 MTR_2g068655 50.000 232 110 3 27 257 33 259 1.20e-75 235
MS.gene52073.t1 MTR_2g069660 49.593 246 115 5 5 248 5 243 1.55e-75 232
MS.gene52073.t1 MTR_2g068030 49.351 231 111 4 19 247 17 243 6.32e-75 231
MS.gene52073.t1 MTR_6g079580 48.790 248 119 5 1 248 1 240 2.97e-74 229
MS.gene52073.t1 MTR_1g062590 48.954 239 115 5 11 248 10 242 5.95e-74 228
MS.gene52073.t1 MTR_1g062630 47.638 254 123 6 11 260 10 257 5.13e-73 226
MS.gene52073.t1 MTR_1g021945 53.982 226 96 5 25 248 26 245 2.88e-72 224
MS.gene52073.t1 MTR_1g062660 48.523 237 116 5 14 248 10 242 2.15e-71 222
MS.gene52073.t1 MTR_1g062350 48.536 239 116 5 11 248 10 242 5.76e-71 221
MS.gene52073.t1 MTR_1g062370 48.117 239 117 5 11 248 10 242 8.33e-71 220
MS.gene52073.t1 MTR_8g107140 49.180 244 117 6 5 248 9 245 1.66e-68 214
MS.gene52073.t1 MTR_1g062340 48.869 221 108 4 29 248 26 242 3.37e-68 213
MS.gene52073.t1 MTR_3g111620 51.556 225 103 5 25 248 27 246 8.96e-68 213
MS.gene52073.t1 MTR_3g068015 41.700 247 137 5 4 248 7 248 1.60e-61 196
MS.gene52073.t1 MTR_6g009480 44.130 247 131 6 5 248 10 252 9.78e-61 195
MS.gene52073.t1 MTR_7g062610 42.276 246 133 5 6 250 7 244 3.41e-60 193
MS.gene52073.t1 MTR_5g059200 44.223 251 124 8 1 247 1 239 4.59e-58 189
MS.gene52073.t1 MTR_4g063630 39.749 239 138 6 12 247 16 251 6.35e-58 187
MS.gene52073.t1 MTR_1g062690 42.678 239 106 6 11 248 10 218 4.85e-56 181
MS.gene52073.t1 MTR_2g067990 46.725 229 90 10 22 248 24 222 7.66e-52 184
MS.gene52073.t1 MTR_5g023850 40.161 249 104 6 3 248 10 216 8.47e-51 168
MS.gene52073.t1 MTR_5g022350 55.263 152 56 4 5 156 83 222 1.02e-45 155
MS.gene52073.t1 MTR_5g010640 38.710 248 122 9 9 248 11 236 2.37e-45 154
MS.gene52073.t1 MTR_5g010635 41.048 229 109 8 23 249 22 226 2.56e-45 154
MS.gene52073.t1 MTR_8g096900 39.759 249 113 10 4 248 33 248 8.49e-45 153
MS.gene52073.t1 MTR_2g067970 45.405 185 92 6 68 248 3 182 6.26e-44 161
MS.gene52073.t1 MTR_2g063150 30.165 242 156 6 4 240 9 242 2.24e-34 126
MS.gene52073.t1 MTR_1g062390 32.411 253 151 7 1 248 1 238 8.79e-32 119
MS.gene52073.t1 MTR_7g076360 32.432 222 84 4 23 244 6 161 1.42e-31 116
MS.gene52073.t1 MTR_8g089020 45.926 135 66 3 109 243 32 159 3.61e-31 115
MS.gene52073.t1 MTR_8g096910 40.244 164 80 8 5 166 3 150 7.56e-27 104
MS.gene52073.t1 MTR_8g096920 44.203 138 66 6 6 142 1 128 2.74e-24 97.4
MS.gene52073.t1 MTR_3g081550 46.591 88 46 1 110 197 16 102 4.35e-18 79.0
MS.gene52073.t1 MTR_1g062640 39.759 83 49 1 84 166 65 146 4.17e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52073.t1 AT4G38670 72.887 284 69 6 1 281 2 280 6.13e-146 412
MS.gene52073.t1 AT4G38670 72.887 284 69 6 1 281 2 280 6.13e-146 412
MS.gene52073.t1 AT4G38670 73.684 266 65 4 19 281 1 264 2.03e-141 400
MS.gene52073.t1 AT1G75800 59.364 283 109 4 6 286 5 283 2.76e-113 332
MS.gene52073.t1 AT4G36010 64.167 240 78 3 22 255 20 257 1.12e-104 308
MS.gene52073.t1 AT4G36010 64.167 240 78 3 22 255 20 257 1.12e-104 308
MS.gene52073.t1 AT1G20030 63.136 236 85 2 22 255 17 252 1.22e-104 309
MS.gene52073.t1 AT1G20030 63.793 232 82 2 26 255 4 235 5.49e-104 306
MS.gene52073.t1 AT2G17860 60.400 250 89 3 4 250 9 251 1.22e-103 304
MS.gene52073.t1 AT4G24180 52.708 277 111 6 6 268 12 282 2.68e-91 275
MS.gene52073.t1 AT4G24180 52.727 275 109 6 6 268 12 277 3.49e-91 275
MS.gene52073.t1 AT4G24180 54.980 251 99 4 6 248 12 256 2.91e-90 270
MS.gene52073.t1 AT4G24180 55.020 249 97 4 6 248 12 251 5.07e-90 270
MS.gene52073.t1 AT4G38660 57.613 243 89 5 12 248 11 245 2.08e-87 266
MS.gene52073.t1 AT4G38660 59.375 224 83 3 25 248 8 223 3.46e-87 265
MS.gene52073.t1 AT5G38280 44.147 299 145 4 4 300 5 283 8.38e-83 264
MS.gene52073.t1 AT5G38280 44.147 299 145 4 4 300 5 283 1.14e-82 263
MS.gene52073.t1 AT4G24180 54.237 236 94 4 6 233 12 241 2.72e-81 250
MS.gene52073.t1 AT5G24620 52.174 253 114 6 1 248 1 251 3.25e-81 253
MS.gene52073.t1 AT4G24180 54.274 234 92 4 6 233 12 236 6.11e-81 249
MS.gene52073.t1 AT5G24620 52.174 253 114 6 1 248 56 306 9.91e-81 253
MS.gene52073.t1 AT5G24620 52.174 253 114 6 1 248 77 327 1.49e-80 253
MS.gene52073.t1 AT1G19320 51.837 245 106 6 8 247 9 246 4.36e-76 234
MS.gene52073.t1 AT1G75030 50.410 244 113 7 6 248 7 243 7.10e-75 231
MS.gene52073.t1 AT1G75050 50.206 243 115 6 6 248 7 243 3.56e-72 224
MS.gene52073.t1 AT1G75040 50.617 243 110 6 6 248 7 239 1.42e-71 222
MS.gene52073.t1 AT1G18250 48.035 229 114 4 20 248 16 239 6.77e-68 213
MS.gene52073.t1 AT1G18250 50.000 218 104 4 31 248 28 240 1.62e-67 212
MS.gene52073.t1 AT1G73620 49.123 228 111 5 21 248 38 260 8.18e-67 211
MS.gene52073.t1 AT1G77700 46.694 242 116 7 6 247 43 271 7.48e-63 202
MS.gene52073.t1 AT1G77700 46.694 242 116 7 6 247 43 271 9.40e-63 202
MS.gene52073.t1 AT2G28790 44.398 241 123 8 13 247 13 248 7.18e-61 195
MS.gene52073.t1 AT2G28790 44.398 241 123 8 13 247 38 273 7.54e-61 196
MS.gene52073.t1 AT1G77700 48.416 221 102 6 27 247 91 299 9.66e-61 198
MS.gene52073.t1 AT5G40020 42.449 245 136 4 5 248 8 248 2.14e-59 191
MS.gene52073.t1 AT5G02140 41.767 249 138 4 9 256 7 249 1.17e-57 188
MS.gene52073.t1 AT5G02140 42.739 241 131 4 9 248 7 241 1.97e-57 186
MS.gene52073.t1 AT4G36000 45.374 227 89 6 101 326 1 193 5.38e-57 184
MS.gene52073.t1 AT4G36000 45.374 227 89 6 101 326 1 193 5.38e-57 184
MS.gene52073.t1 AT4G18253 39.837 246 132 6 5 248 7 238 1.13e-54 179
MS.gene52073.t1 AT1G70250 42.358 229 119 7 26 248 146 367 4.32e-51 181
MS.gene52073.t1 AT4G11650 40.000 245 121 8 5 248 4 223 5.60e-48 161
MS.gene52073.t1 AT4G18250 38.462 299 161 10 6 299 40 320 1.41e-47 170
MS.gene52073.t1 AT5G24620 54.167 120 52 2 132 248 15 134 1.08e-37 136
MS.gene52073.t1 AT2G24810 58.667 75 31 0 173 247 118 192 2.04e-23 95.9

Find 96 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGACCCGACCACCCTTTC+GGG 0.196001 4.1:-30008956 None:intergenic
AAGGGTGGTCGGGTCGAATA+TGG 0.198961 4.1:+30008961 MS.gene52073:CDS
GAGCCATAAACAGTGTTAAA+AGG 0.243154 4.1:-30011653 None:intergenic
GGTTGTCTTGTGGATCTTAA+TGG 0.253676 4.1:+30009749 MS.gene52073:CDS
AGAAGCGCGTGTGAGGCTTT+TGG 0.317232 4.1:+30009833 MS.gene52073:CDS
GAGAGTATGTACCTTGTATA+AGG 0.347177 4.1:-30010031 None:intergenic
ACAAGTGCCGTTACACAATA+TGG 0.350341 4.1:+30008847 MS.gene52073:CDS
TGTTTATGGCTCCCTTTGTA+TGG 0.357494 4.1:+30011664 MS.gene52073:CDS
ATTCGACCCGACCACCCTTT+CGG 0.379973 4.1:-30008957 None:intergenic
CTTACATTATCTTTCCTCTC+AGG 0.391595 4.1:+30008699 MS.gene52073:CDS
GTGAACTCCGCTAATGTTGC+CGG 0.404349 4.1:-30009086 None:intergenic
TCCCTTTGTATGGACTCTTC+AGG 0.408087 4.1:+30011674 MS.gene52073:CDS
CGTGGGAATGGGAGTGGCAG+TGG 0.422771 4.1:+30009800 MS.gene52073:CDS
TTGAAGGTGGCGCGTGGGAA+TGG 0.425944 4.1:+30009788 MS.gene52073:CDS
TACTTGTCAAAACAACATTC+TGG 0.427034 4.1:+30011548 MS.gene52073:CDS
GGACTTCTACGACGTGAGTT+TGG 0.430820 4.1:+30009130 MS.gene52073:CDS
CAGTGTTAAAAGGGCATGAC+AGG 0.438064 4.1:-30011643 None:intergenic
GTGGCGCCGGAGAGTAATCC+TGG 0.438241 4.1:-30008870 None:intergenic
AGAGGTGGCTGCAGCGCTAC+TGG 0.439408 4.1:+30009728 MS.gene52073:CDS
TCCACTCTTGAGAGTGAATC+CGG 0.444832 4.1:-30008913 None:intergenic
CAACCCATCGGCACCGTTCA+AGG 0.452638 4.1:-30009108 None:intergenic
AAAGTAGCATGCGCCGGCGG+TGG 0.462101 4.1:+30009053 MS.gene52073:CDS
CATAAGCTATAATCTGCGTT+TGG 0.462455 4.1:-30011595 None:intergenic
TGAAGGTGGCGCGTGGGAAT+GGG 0.462706 4.1:+30009789 MS.gene52073:CDS
GTGGCGCGTGGGAATGGGAG+TGG 0.468651 4.1:+30009794 MS.gene52073:CDS
GTGAATCCGGTGGTGGGTAG+CGG 0.468946 4.1:-30008900 None:intergenic
CTCTCAAGAGTGGAAATTCA+AGG 0.470138 4.1:+30008922 MS.gene52073:CDS
TGGTTGTCCGGTGGATTTGA+AGG 0.475420 4.1:+30009772 MS.gene52073:CDS
TTCACCTTGAACGGTGCCGA+TGG 0.479062 4.1:+30009104 MS.gene52073:CDS
GGTGGGTAGCGGCGGTGAAG+TGG 0.480296 4.1:-30008889 None:intergenic
GTGTTGGGAGCAAGGAAAGA+TGG 0.483447 4.1:+30011491 MS.gene52073:CDS
ATAGAAGGACCACACGTGTC+AGG 0.491976 4.1:-30009893 None:intergenic
CTGAGAGGAAAGATAATGTA+AGG 0.492145 4.1:-30008698 None:intergenic
CTTGAGAGTGAATCCGGTGG+TGG 0.495227 4.1:-30008907 None:intergenic
AGCCATAAACAGTGTTAAAA+GGG 0.495668 4.1:-30011652 None:intergenic
AGGGTGGTCGGGTCGAATAT+GGG 0.498962 4.1:+30008962 MS.gene52073:CDS
ATAACTGCCGACTGTGGCTC+CGG 0.499129 4.1:+30009029 MS.gene52073:CDS
CTTGAACGGTGCCGATGGGT+TGG 0.506758 4.1:+30009109 MS.gene52073:CDS
CAGCGCTACTGGTTGTCTTG+TGG 0.515275 4.1:+30009739 MS.gene52073:CDS
GGATCTTAATGGTGGTTGTC+CGG 0.517771 4.1:+30009760 MS.gene52073:CDS
GCCTGAAGAGTCCATACAAA+GGG 0.521704 4.1:-30011675 None:intergenic
GTGGATTTGAAGGTGGCGCG+TGG 0.524437 4.1:+30009782 MS.gene52073:CDS
TGCCGTTACACAATATGGCC+AGG 0.524801 4.1:+30008852 MS.gene52073:CDS
CGGAGGTTTAGCTCCACCGC+CGG 0.529226 4.1:-30009066 None:intergenic
CAAATCCCGAAAGGGTGGTC+GGG 0.529504 4.1:+30008951 MS.gene52073:CDS
TTTGCCCCTTGCCTTATACA+AGG 0.531616 4.1:+30010020 MS.gene52073:CDS
TACGACGTGAGTTTGGTTGA+CGG 0.533722 4.1:+30009137 MS.gene52073:CDS
AGAAGCACATGTGTAAGTAC+TGG 0.536470 4.1:-30009978 None:intergenic
TGCTGATTGTGGCGAAAGGA+GGG 0.536940 4.1:+30009702 MS.gene52073:CDS
CGGCGGTGGAGCTAAACCTC+CGG 0.542497 4.1:+30009067 MS.gene52073:CDS
TGCGTGTAGAAGCGCGTGTG+AGG 0.544201 4.1:+30009826 MS.gene52073:CDS
CGCGCCACCTTCAAATCCAC+CGG 0.546086 4.1:-30009779 None:intergenic
TAAACCTCCGGCAACATTAG+CGG 0.546486 4.1:+30009079 MS.gene52073:CDS
TAGCGGCGGTGAAGTGGCGC+CGG 0.556355 4.1:-30008883 None:intergenic
TCACCTTGAACGGTGCCGAT+GGG 0.559325 4.1:+30009105 MS.gene52073:CDS
ATGTACCTTGTATAAGGCAA+GGG 0.560600 4.1:-30010025 None:intergenic
TAATATTCCGATGCTGATTG+TGG 0.561283 4.1:+30009691 MS.gene52073:CDS
ATGCTGATTGTGGCGAAAGG+AGG 0.563722 4.1:+30009701 MS.gene52073:CDS
TCCGGAAAAGTAGCATGCGC+CGG 0.566469 4.1:+30009047 MS.gene52073:CDS
ACAAATCCCGAAAGGGTGGT+CGG 0.566547 4.1:+30008950 MS.gene52073:CDS
TCACCGCCGCTACCCACCAC+CGG 0.567829 4.1:+30008894 MS.gene52073:CDS
TTAGCGGAGTTCACCTTGAA+CGG 0.567989 4.1:+30009095 MS.gene52073:CDS
AATCCGGTGGTGGGTAGCGG+CGG 0.569676 4.1:-30008897 None:intergenic
GCGAAAGGAGGGACGAGAGG+TGG 0.576149 4.1:+30009713 MS.gene52073:CDS
GGACTATACAAATCCCGAAA+GGG 0.577892 4.1:+30008943 MS.gene52073:CDS
TATGTACCTTGTATAAGGCA+AGG 0.588394 4.1:-30010026 None:intergenic
TCTGGCGGTTCTTCATCGAA+AGG 0.589806 4.1:+30011566 MS.gene52073:CDS
ACGAAGATTGTTTACCTGAG+AGG 0.591768 4.1:-30008713 None:intergenic
TTATGTTACCTCTATTGCTG+TGG 0.596714 4.1:+30011613 MS.gene52073:CDS
TGTCTTGTGGATCTTAATGG+TGG 0.605370 4.1:+30009752 MS.gene52073:CDS
ATATGGCCAGGATTACTCTC+CGG 0.607890 4.1:+30008864 MS.gene52073:CDS
AACTCCGCTAATGTTGCCGG+AGG 0.608625 4.1:-30009083 None:intergenic
TCTTAATGGTGGTTGTCCGG+TGG 0.609618 4.1:+30009763 MS.gene52073:CDS
TACGCGTAGCTATAAGAGCG+TGG 0.613171 4.1:-30009944 None:intergenic
AGGACTATACAAATCCCGAA+AGG 0.617814 4.1:+30008942 MS.gene52073:CDS
ACGCGTAGCTATAAGAGCGT+GGG 0.618064 4.1:-30009943 None:intergenic
ACCGGATTCACTCTCAAGAG+TGG 0.618118 4.1:+30008912 MS.gene52073:CDS
CCTTTCGCCACAATCAGCAT+CGG 0.620311 4.1:-30009698 None:intergenic
GTCGTAGAAGTCCAACCCAT+CGG 0.627846 4.1:-30009120 None:intergenic
TTGAGAGTGAATCCGGTGGT+GGG 0.628182 4.1:-30008906 None:intergenic
CCGATGCTGATTGTGGCGAA+AGG 0.629640 4.1:+30009698 MS.gene52073:CDS
TCATGTATAACTGCCGACTG+TGG 0.630712 4.1:+30009023 MS.gene52073:CDS
TGGATTTGAAGGTGGCGCGT+GGG 0.631113 4.1:+30009783 MS.gene52073:CDS
TCCTCGCTATTGTTGTAGTG+AGG 0.634828 4.1:+30009859 MS.gene52073:CDS
ATCCTGGCCATATTGTGTAA+CGG 0.635375 4.1:-30008854 None:intergenic
GTGGCGAAAGGAGGGACGAG+AGG 0.637443 4.1:+30009710 MS.gene52073:CDS
TTGTCCGGTGGATTTGAAGG+TGG 0.644144 4.1:+30009775 MS.gene52073:CDS
CTATACAAATCCCGAAAGGG+TGG 0.651118 4.1:+30008946 MS.gene52073:CDS
TATTCTACGCCTGACACGTG+TGG 0.659755 4.1:+30009884 MS.gene52073:CDS
GGAAAAGTAGCATGCGCCGG+CGG 0.660873 4.1:+30009050 MS.gene52073:CDS
TGTACCTTGTATAAGGCAAG+GGG 0.668085 4.1:-30010024 None:intergenic
TGCCTGAAGAGTCCATACAA+AGG 0.671288 4.1:-30011676 None:intergenic
ATATGGGCACGAACTCTCTG+CGG 0.685254 4.1:+30008978 MS.gene52073:CDS
TTGTCAAAACAACATTCTGG+CGG 0.691588 4.1:+30011551 MS.gene52073:CDS
TCCTCACTACAACAATAGCG+AGG 0.701705 4.1:-30009860 None:intergenic
ACTCTTGAGAGTGAATCCGG+TGG 0.709716 4.1:-30008910 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATAAAAGTGTTTAATA+TGG + chr4.1:30011023-30011042 MS.gene52073:intron 10.0%
!!! TATATTTTAATGTTATGTTA+GGG + chr4.1:30010988-30011007 MS.gene52073:intron 10.0%
!!! TCTAAAAATATTGTTATTAT+TGG + chr4.1:30009303-30009322 MS.gene52073:intron 10.0%
!! ATAATCAAAAGCTAAAAAAA+TGG - chr4.1:30010084-30010103 None:intergenic 15.0%
!! CTAACATAACATTAAAATAT+AGG - chr4.1:30010989-30011008 None:intergenic 15.0%
!!! CTATATTTTAATGTTATGTT+AGG + chr4.1:30010987-30011006 MS.gene52073:intron 15.0%
!!! TATTGTTATTATTGGTATAA+AGG + chr4.1:30009311-30009330 MS.gene52073:intron 15.0%
!! AAAATATAGGCATATTAATC+CGG - chr4.1:30010976-30010995 None:intergenic 20.0%
!! AATTGTATCTATATAAAGCA+CGG + chr4.1:30009198-30009217 MS.gene52073:intron 20.0%
!! AGTCTCTAATTAAAATACAT+AGG - chr4.1:30010136-30010155 None:intergenic 20.0%
!! ATAATCCAATTATTAGCATA+TGG - chr4.1:30010519-30010538 None:intergenic 20.0%
!! ATTTCATCAAATTTGAAGAA+AGG - chr4.1:30009342-30009361 None:intergenic 20.0%
!! TATAGTGATAGGAAAAAAAA+CGG + chr4.1:30010378-30010397 MS.gene52073:intron 20.0%
!!! AATCACATAAGACAATTTTT+TGG + chr4.1:30011354-30011373 MS.gene52073:intron 20.0%
!!! ACACTTTTATTTATTCAACT+TGG - chr4.1:30011017-30011036 None:intergenic 20.0%
!!! ATCACATAAGACAATTTTTT+GGG + chr4.1:30011355-30011374 MS.gene52073:intron 20.0%
!!! CAACTATTTTTCATAATTCA+AGG - chr4.1:30010774-30010793 None:intergenic 20.0%
!!! CACTTTTATTTATTCAACTT+GGG - chr4.1:30011016-30011035 None:intergenic 20.0%
!!! TTAAGCATATTTTACATATG+TGG - chr4.1:30011204-30011223 None:intergenic 20.0%
! AAAAAAGAGTCAGATAACAT+AGG + chr4.1:30010686-30010705 MS.gene52073:intron 25.0%
! AAAATTTCTTTGTGCTTGAT+AGG + chr4.1:30009665-30009684 MS.gene52073:intron 25.0%
! AAGATATCTACTCGAATTAA+AGG + chr4.1:30010403-30010422 MS.gene52073:intron 25.0%
! ACGAATATATCTATAGTGAT+AGG + chr4.1:30010367-30010386 MS.gene52073:intron 25.0%
! AGAGTTACATTTGATTCAAT+TGG + chr4.1:30009529-30009548 MS.gene52073:intron 25.0%
! AGATATCTACTCGAATTAAA+GGG + chr4.1:30010404-30010423 MS.gene52073:intron 25.0%
! CATTACAAGAAAAAACAACA+AGG - chr4.1:30011316-30011335 None:intergenic 25.0%
! CCATGACTAATATAAAATTG+CGG - chr4.1:30010905-30010924 None:intergenic 25.0%
! GTTATGGAAAAACATTTGTT+GGG + chr4.1:30010619-30010638 MS.gene52073:intron 25.0%
! TAAAATTGAATTCGAGAAAG+AGG - chr4.1:30011107-30011126 None:intergenic 25.0%
! TATTAGTCATGGGAAAAATA+TGG + chr4.1:30010913-30010932 MS.gene52073:intron 25.0%
! TCATAATTCAAGGTAGAAAA+TGG - chr4.1:30010764-30010783 None:intergenic 25.0%
! TGTTATGGAAAAACATTTGT+TGG + chr4.1:30010618-30010637 MS.gene52073:intron 25.0%
!! ATCAAGCACAAAGAAATTTT+AGG - chr4.1:30009665-30009684 None:intergenic 25.0%
!! CACATATAAAAGACGTTTTA+AGG - chr4.1:30011239-30011258 None:intergenic 25.0%
!! CGCAATTTTATATTAGTCAT+GGG + chr4.1:30010903-30010922 MS.gene52073:intron 25.0%
!!! ATCATAGTTTTGTTTACAAG+AGG - chr4.1:30011527-30011546 None:intergenic 25.0%
!!! CTTGTTGTTTTTTCTTGTAA+TGG + chr4.1:30011314-30011333 MS.gene52073:intron 25.0%
!!! CTTTTTTGTTGCTAAATCAA+AGG - chr4.1:30010673-30010692 None:intergenic 25.0%
!!! TCACATAAGACAATTTTTTG+GGG + chr4.1:30011356-30011375 MS.gene52073:intron 25.0%
!!! TTGGATTATTTCTATCAACA+TGG + chr4.1:30010530-30010549 MS.gene52073:intron 25.0%
!!! TTTAACTTCACTTTGCTATT+TGG + chr4.1:30008776-30008795 MS.gene52073:intron 25.0%
AAAAACAGCGAGTAAATAGA+AGG - chr4.1:30009911-30009930 None:intergenic 30.0%
AGCCATAAACAGTGTTAAAA+GGG - chr4.1:30011655-30011674 None:intergenic 30.0%
ATATGCTCCAATGAAATGAA+TGG + chr4.1:30010490-30010509 MS.gene52073:intron 30.0%
ATCTATATAAAGCACGGATT+AGG + chr4.1:30009204-30009223 MS.gene52073:intron 30.0%
ATGGTAACCATTCATTTCAT+TGG - chr4.1:30010500-30010519 None:intergenic 30.0%
ATTAGAGACTATGATTGCTA+TGG + chr4.1:30010146-30010165 MS.gene52073:intron 30.0%
ATTTATGCATGTATCTTCTG+TGG + chr4.1:30011449-30011468 MS.gene52073:intron 30.0%
CATTTGATTCAATTGGAAAC+TGG + chr4.1:30009536-30009555 MS.gene52073:intron 30.0%
GATATCTACTCGAATTAAAG+GGG + chr4.1:30010405-30010424 MS.gene52073:intron 30.0%
GGTTACCATATGCTAATAAT+TGG + chr4.1:30010511-30010530 MS.gene52073:intron 30.0%
TACTTGTCAAAACAACATTC+TGG + chr4.1:30011548-30011567 MS.gene52073:CDS 30.0%
TTAGATAACTCATTACCCAT+TGG + chr4.1:30009464-30009483 MS.gene52073:intron 30.0%
! AAAAACATTTGTTGGGAGTT+GGG + chr4.1:30010626-30010645 MS.gene52073:intron 30.0%
! CCGCAATTTTATATTAGTCA+TGG + chr4.1:30010902-30010921 MS.gene52073:intron 30.0%
! CTTTGCTATCAAGTTAAGTA+AGG + chr4.1:30009441-30009460 MS.gene52073:intron 30.0%
! GAAAATGGTTTTTCTGTAGT+CGG - chr4.1:30010749-30010768 None:intergenic 30.0%
!! AACTTTGGAACAAATGGTTA+AGG - chr4.1:30010584-30010603 None:intergenic 30.0%
!! ACTTTGGAACAAATGGTTAA+GGG - chr4.1:30010583-30010602 None:intergenic 30.0%
!! GAGTTGTTTTGTTAGAGTAA+GGG + chr4.1:30010108-30010127 MS.gene52073:intron 30.0%
!! TAATCGAACTTTGGAACAAA+TGG - chr4.1:30010590-30010609 None:intergenic 30.0%
!! TGAGTTGTTTTGTTAGAGTA+AGG + chr4.1:30010107-30010126 MS.gene52073:intron 30.0%
AAAATATGGTCAGACCTACA+TGG + chr4.1:30010927-30010946 MS.gene52073:intron 35.0%
AAATATGGTCAGACCTACAT+GGG + chr4.1:30010928-30010947 MS.gene52073:intron 35.0%
AACATGTGCAAATGTGGATT+TGG - chr4.1:30010197-30010216 None:intergenic 35.0%
AACTCTGATGAAGCTTATGT+TGG - chr4.1:30009515-30009534 None:intergenic 35.0%
AAGCAAGTTTGGAAACTTAG+TGG - chr4.1:30011271-30011290 None:intergenic 35.0%
AATATGGTTTCTAAGCCATG+AGG + chr4.1:30011039-30011058 MS.gene52073:intron 35.0%
ACCAGTCAATAATCGAACTT+TGG - chr4.1:30010599-30010618 None:intergenic 35.0%
ACTCTGATGAAGCTTATGTT+GGG - chr4.1:30009514-30009533 None:intergenic 35.0%
ATAGGGCTTCTATGATGATA+TGG + chr4.1:30009571-30009590 MS.gene52073:intron 35.0%
ATGTACCTTGTATAAGGCAA+GGG - chr4.1:30010028-30010047 None:intergenic 35.0%
CATAAGCTATAATCTGCGTT+TGG - chr4.1:30011598-30011617 None:intergenic 35.0%
CTGAGAGGAAAGATAATGTA+AGG - chr4.1:30008701-30008720 None:intergenic 35.0%
CTTACATTATCTTTCCTCTC+AGG + chr4.1:30008699-30008718 MS.gene52073:CDS 35.0%
GAGCCATAAACAGTGTTAAA+AGG - chr4.1:30011656-30011675 None:intergenic 35.0%
GGGACATTTACGTCTTTATT+AGG + chr4.1:30011376-30011395 MS.gene52073:intron 35.0%
GTACCTCTGAACATAATTCA+AGG - chr4.1:30008803-30008822 None:intergenic 35.0%
GTCTTATGTGATTTGAGTGA+GGG - chr4.1:30011347-30011366 None:intergenic 35.0%
TAGGGCTTCTATGATGATAT+GGG + chr4.1:30009572-30009591 MS.gene52073:intron 35.0%
TATGTACCTTGTATAAGGCA+AGG - chr4.1:30010029-30010048 None:intergenic 35.0%
TCCAAAGTTCGATTATTGAC+TGG + chr4.1:30010595-30010614 MS.gene52073:intron 35.0%
TGATTCAATTGGAAACTGGA+GGG + chr4.1:30009540-30009559 MS.gene52073:intron 35.0%
TGTCTTATGTGATTTGAGTG+AGG - chr4.1:30011348-30011367 None:intergenic 35.0%
TTAATCCGGTAATCTGCATT+TGG - chr4.1:30010962-30010981 None:intergenic 35.0%
TTATGTTACCTCTATTGCTG+TGG + chr4.1:30011613-30011632 MS.gene52073:CDS 35.0%
TTCAATGTAATCACGTGTGT+TGG - chr4.1:30009272-30009291 None:intergenic 35.0%
TTGATTCAATTGGAAACTGG+AGG + chr4.1:30009539-30009558 MS.gene52073:intron 35.0%
TTGTCAAAACAACATTCTGG+CGG + chr4.1:30011551-30011570 MS.gene52073:CDS 35.0%
! GAAAAACATTTGTTGGGAGT+TGG + chr4.1:30010625-30010644 MS.gene52073:intron 35.0%
! GAGAGTATGTACCTTGTATA+AGG - chr4.1:30010034-30010053 None:intergenic 35.0%
! TAATATTCCGATGCTGATTG+TGG + chr4.1:30009691-30009710 MS.gene52073:CDS 35.0%
! TACTCGAATTAAAGGGGTAT+TGG + chr4.1:30010411-30010430 MS.gene52073:intron 35.0%
! TCGATTATTGACTGGTGTTA+TGG + chr4.1:30010603-30010622 MS.gene52073:intron 35.0%
! TCTATGATGATATGGGGTTT+TGG + chr4.1:30009579-30009598 MS.gene52073:intron 35.0%
! TGCCCTTTTAACACTGTTTA+TGG + chr4.1:30011650-30011669 MS.gene52073:CDS 35.0%
!! AAAGGGGTATTGGTTGATTT+GGG + chr4.1:30010421-30010440 MS.gene52073:intron 35.0%
!! AATGCAGTTTGTTGACCAAT+GGG - chr4.1:30009482-30009501 None:intergenic 35.0%
!! TAAAGGGGTATTGGTTGATT+TGG + chr4.1:30010420-30010439 MS.gene52073:intron 35.0%
!! TAATGCAGTTTGTTGACCAA+TGG - chr4.1:30009483-30009502 None:intergenic 35.0%
!! TTATTTCTATCAACATGGCG+AGG + chr4.1:30010535-30010554 MS.gene52073:intron 35.0%
!!! GTTTTGTTTACAAGAGGAAG+TGG - chr4.1:30011521-30011540 None:intergenic 35.0%
AACTGGAGGGTTCTATCTAT+AGG + chr4.1:30009553-30009572 MS.gene52073:intron 40.0%
AATGGCCAAATGCAGATTAC+CGG + chr4.1:30010954-30010973 MS.gene52073:intron 40.0%
AATTGCGGAGAAGATACAAC+CGG - chr4.1:30010890-30010909 None:intergenic 40.0%
ACCACAAGGAAAAGCAAGTT+TGG - chr4.1:30011282-30011301 None:intergenic 40.0%
ACGAAGATTGTTTACCTGAG+AGG - chr4.1:30008716-30008735 None:intergenic 40.0%
ACTGGAGGGTTCTATCTATA+GGG + chr4.1:30009554-30009573 MS.gene52073:intron 40.0%
AGGAAAATCCAAACACCACA+AGG - chr4.1:30011296-30011315 None:intergenic 40.0%
AGGACTATACAAATCCCGAA+AGG + chr4.1:30008942-30008961 MS.gene52073:CDS 40.0%
AGGGCTTCTATGATGATATG+GGG + chr4.1:30009573-30009592 MS.gene52073:intron 40.0%
ATCCTGGCCATATTGTGTAA+CGG - chr4.1:30008857-30008876 None:intergenic 40.0%
CCACAAAACATGTGCAAATG+TGG - chr4.1:30010203-30010222 None:intergenic 40.0%
CTCTCAAGAGTGGAAATTCA+AGG + chr4.1:30008922-30008941 MS.gene52073:CDS 40.0%
GGACTATACAAATCCCGAAA+GGG + chr4.1:30008943-30008962 MS.gene52073:CDS 40.0%
GGTCAACAAACTGCATTACT+AGG + chr4.1:30009485-30009504 MS.gene52073:intron 40.0%
GGTCCTTGAATTATGTTCAG+AGG + chr4.1:30008797-30008816 MS.gene52073:intron 40.0%
GGTTGTCTTGTGGATCTTAA+TGG + chr4.1:30009749-30009768 MS.gene52073:CDS 40.0%
TCAGACCTACATGGGTAAAA+TGG + chr4.1:30010936-30010955 MS.gene52073:intron 40.0%
TGATGTAAGCCCGTGTAATT+TGG - chr4.1:30010845-30010864 None:intergenic 40.0%
TGTACCTTGTATAAGGCAAG+GGG - chr4.1:30010027-30010046 None:intergenic 40.0%
TGTCTTGTGGATCTTAATGG+TGG + chr4.1:30009752-30009771 MS.gene52073:CDS 40.0%
TGTTTATGGCTCCCTTTGTA+TGG + chr4.1:30011664-30011683 MS.gene52073:CDS 40.0%
! ACAAGTGCCGTTACACAATA+TGG + chr4.1:30008847-30008866 MS.gene52073:CDS 40.0%
! AGAAGCACATGTGTAAGTAC+TGG - chr4.1:30009981-30010000 None:intergenic 40.0%
! CCACATTTGCACATGTTTTG+TGG + chr4.1:30010200-30010219 MS.gene52073:intron 40.0%
! TTTGAGCAGCCAAAAAGTGT+TGG + chr4.1:30011475-30011494 MS.gene52073:intron 40.0%
! TTTGCACATGTTTTGTGGAC+TGG + chr4.1:30010205-30010224 MS.gene52073:intron 40.0%
!! ATTGGTTGATTTGGGCGATA+GGG + chr4.1:30010429-30010448 MS.gene52073:intron 40.0%
!! GTTTTTCTGTAGTCGGTGTT+CGG - chr4.1:30010742-30010761 None:intergenic 40.0%
!! TATTGGTTGATTTGGGCGAT+AGG + chr4.1:30010428-30010447 MS.gene52073:intron 40.0%
!! TCCAAACTTGCTTTTCCTTG+TGG + chr4.1:30011278-30011297 MS.gene52073:intron 40.0%
!! TGTCTGGTGTCATATACTTG+TGG + chr4.1:30009229-30009248 MS.gene52073:intron 40.0%
!! TTGAGCAGCCAAAAAGTGTT+GGG + chr4.1:30011476-30011495 MS.gene52073:intron 40.0%
!! TTGCTTTTCCTTGTGGTGTT+TGG + chr4.1:30011285-30011304 MS.gene52073:intron 40.0%
!! TTTGGCCATTTTACCCATGT+AGG - chr4.1:30010944-30010963 None:intergenic 40.0%
!!! ACACTTTTTGGCTGCTCAAA+AGG - chr4.1:30011475-30011494 None:intergenic 40.0%
AGAGACTAGTACACTACGTG+TGG - chr4.1:30011070-30011089 None:intergenic 45.0%
ATATGGCCAGGATTACTCTC+CGG + chr4.1:30008864-30008883 MS.gene52073:CDS 45.0%
ATTGCGGAGAAGATACAACC+GGG - chr4.1:30010889-30010908 None:intergenic 45.0%
CCTCACAGGTCCAAATTACA+CGG + chr4.1:30010832-30010851 MS.gene52073:intron 45.0%
CTATACAAATCCCGAAAGGG+TGG + chr4.1:30008946-30008965 MS.gene52073:CDS 45.0%
CTCACAGGTCCAAATTACAC+GGG + chr4.1:30010833-30010852 MS.gene52073:intron 45.0%
GAAAAACGCCACAGCAATAG+AGG - chr4.1:30011624-30011643 None:intergenic 45.0%
GATTTGGCACATCATCCAAC+TGG - chr4.1:30010181-30010200 None:intergenic 45.0%
GCCTGAAGAGTCCATACAAA+GGG - chr4.1:30011678-30011697 None:intergenic 45.0%
GGATCTTAATGGTGGTTGTC+CGG + chr4.1:30009760-30009779 MS.gene52073:CDS 45.0%
TAAACCTCCGGCAACATTAG+CGG + chr4.1:30009079-30009098 MS.gene52073:CDS 45.0%
TACGACGTGAGTTTGGTTGA+CGG + chr4.1:30009137-30009156 MS.gene52073:CDS 45.0%
TCCACTCTTGAGAGTGAATC+CGG - chr4.1:30008916-30008935 None:intergenic 45.0%
TCCCTTTGTATGGACTCTTC+AGG + chr4.1:30011674-30011693 MS.gene52073:CDS 45.0%
TCCTCACTACAACAATAGCG+AGG - chr4.1:30009863-30009882 None:intergenic 45.0%
TCCTCGCTATTGTTGTAGTG+AGG + chr4.1:30009859-30009878 MS.gene52073:CDS 45.0%
TGCCTGAAGAGTCCATACAA+AGG - chr4.1:30011679-30011698 None:intergenic 45.0%
TGGTTGACGGTAAGTGTGTT+CGG + chr4.1:30009150-30009169 MS.gene52073:intron 45.0%
TTAGCGGAGTTCACCTTGAA+CGG + chr4.1:30009095-30009114 MS.gene52073:CDS 45.0%
TTTGCCCCTTGCCTTATACA+AGG + chr4.1:30010020-30010039 MS.gene52073:CDS 45.0%
! AATCACGTGTGTTGGTGTGT+TGG - chr4.1:30009264-30009283 None:intergenic 45.0%
! ACACGTAGTGTACTAGTCTC+TGG + chr4.1:30011069-30011088 MS.gene52073:intron 45.0%
! CAGTGTTAAAAGGGCATGAC+AGG - chr4.1:30011646-30011665 None:intergenic 45.0%
! TCATGTATAACTGCCGACTG+TGG + chr4.1:30009023-30009042 MS.gene52073:CDS 45.0%
! TCCTTGCTCCCAACACTTTT+TGG - chr4.1:30011487-30011506 None:intergenic 45.0%
!! TTGGTTGATTTGGGCGATAG+GGG + chr4.1:30010430-30010449 MS.gene52073:intron 45.0%
AATTTGGACCTGTGAGGCTG+TGG - chr4.1:30010829-30010848 None:intergenic 50.0%
ACAAATCCCGAAAGGGTGGT+CGG + chr4.1:30008950-30008969 MS.gene52073:CDS 50.0%
ACCGGATTCACTCTCAAGAG+TGG + chr4.1:30008912-30008931 MS.gene52073:CDS 50.0%
ACTCTTGAGAGTGAATCCGG+TGG - chr4.1:30008913-30008932 None:intergenic 50.0%
ATAGAAGGACCACACGTGTC+AGG - chr4.1:30009896-30009915 None:intergenic 50.0%
ATATGGGCACGAACTCTCTG+CGG + chr4.1:30008978-30008997 MS.gene52073:CDS 50.0%
CCGTGTAATTTGGACCTGTG+AGG - chr4.1:30010835-30010854 None:intergenic 50.0%
CCTTTCGCCACAATCAGCAT+CGG - chr4.1:30009701-30009720 None:intergenic 50.0%
CTATGGAAGCTCAAGCCAGT+TGG + chr4.1:30010163-30010182 MS.gene52073:intron 50.0%
GGACTTCTACGACGTGAGTT+TGG + chr4.1:30009130-30009149 MS.gene52073:CDS 50.0%
GTCGTAGAAGTCCAACCCAT+CGG - chr4.1:30009123-30009142 None:intergenic 50.0%
GTGAACTCCGCTAATGTTGC+CGG - chr4.1:30009089-30009108 None:intergenic 50.0%
GTGTTGGGAGCAAGGAAAGA+TGG + chr4.1:30011491-30011510 MS.gene52073:CDS 50.0%
TACGCGTAGCTATAAGAGCG+TGG - chr4.1:30009947-30009966 None:intergenic 50.0%
TATTCTACGCCTGACACGTG+TGG + chr4.1:30009884-30009903 MS.gene52073:CDS 50.0%
TCTGGCGGTTCTTCATCGAA+AGG + chr4.1:30011566-30011585 MS.gene52073:CDS 50.0%
TCTTAATGGTGGTTGTCCGG+TGG + chr4.1:30009763-30009782 MS.gene52073:CDS 50.0%
TGCCGTTACACAATATGGCC+AGG + chr4.1:30008852-30008871 MS.gene52073:CDS 50.0%
TTGAGAGTGAATCCGGTGGT+GGG - chr4.1:30008909-30008928 None:intergenic 50.0%
TTGCGGAGAAGATACAACCG+GGG - chr4.1:30010888-30010907 None:intergenic 50.0%
TTGGGAGAGGTCTTTGCAAG+AGG + chr4.1:30010644-30010663 MS.gene52073:intron 50.0%
! ACGCGTAGCTATAAGAGCGT+GGG - chr4.1:30009946-30009965 None:intergenic 50.0%
! ATGCTGATTGTGGCGAAAGG+AGG + chr4.1:30009701-30009720 MS.gene52073:CDS 50.0%
! CATTTGTTGGGAGTTGGGAG+AGG + chr4.1:30010631-30010650 MS.gene52073:intron 50.0%
! GTGTGTTGGTGTGTTGGTGT+CGG - chr4.1:30009258-30009277 None:intergenic 50.0%
! TACTTTTCCGGAGCCACAGT+CGG - chr4.1:30009039-30009058 None:intergenic 50.0%
! TGCTGATTGTGGCGAAAGGA+GGG + chr4.1:30009702-30009721 MS.gene52073:CDS 50.0%
! TGGTTGTCCGGTGGATTTGA+AGG + chr4.1:30009772-30009791 MS.gene52073:CDS 50.0%
! TGTAGTCGGTGTTCGGTCAA+TGG - chr4.1:30010735-30010754 None:intergenic 50.0%
! TTGTCCGGTGGATTTGAAGG+TGG + chr4.1:30009775-30009794 MS.gene52073:CDS 50.0%
! TTTTGTGAATACCCCTCCCC+CGG + chr4.1:30010868-30010887 MS.gene52073:intron 50.0%
!! AAGCACGGATTAGGCATGTC+TGG + chr4.1:30009213-30009232 MS.gene52073:intron 50.0%
!! GCCAAAAAGTGTTGGGAGCA+AGG + chr4.1:30011483-30011502 MS.gene52073:intron 50.0%
!! TGATATGGGGTTTTGGCGTC+CGG + chr4.1:30009586-30009605 MS.gene52073:intron 50.0%
!!! AGGGGACTGGGAGCATTTTT+TGG + chr4.1:30010448-30010467 MS.gene52073:intron 50.0%
AACTCCGCTAATGTTGCCGG+AGG - chr4.1:30009086-30009105 None:intergenic 55.0%
AAGGGTGGTCGGGTCGAATA+TGG + chr4.1:30008961-30008980 MS.gene52073:CDS 55.0%
AGAAGATACAACCGGGGGAG+GGG - chr4.1:30010882-30010901 None:intergenic 55.0%
AGGGTGGTCGGGTCGAATAT+GGG + chr4.1:30008962-30008981 MS.gene52073:CDS 55.0%
ATTCGACCCGACCACCCTTT+CGG - chr4.1:30008960-30008979 None:intergenic 55.0%
CAAATCCCGAAAGGGTGGTC+GGG + chr4.1:30008951-30008970 MS.gene52073:CDS 55.0%
CTACGTGTGGAAGAGCCTCA+TGG - chr4.1:30011057-30011076 None:intergenic 55.0%
CTTGAGAGTGAATCCGGTGG+TGG - chr4.1:30008910-30008929 None:intergenic 55.0%
GAGAAGATACAACCGGGGGA+GGG - chr4.1:30010883-30010902 None:intergenic 55.0%
GATTTGGGCGATAGGGGACT+GGG + chr4.1:30010436-30010455 MS.gene52073:intron 55.0%
TCCGGAAAAGTAGCATGCGC+CGG + chr4.1:30009047-30009066 MS.gene52073:CDS 55.0%
TGCGGAGAAGATACAACCGG+GGG - chr4.1:30010887-30010906 None:intergenic 55.0%
TGGATTTGAAGGTGGCGCGT+GGG + chr4.1:30009783-30009802 MS.gene52073:CDS 55.0%
! AAGCGCGTGTGAGGCTTTTG+GGG + chr4.1:30009835-30009854 MS.gene52073:CDS 55.0%
! ATAACTGCCGACTGTGGCTC+CGG + chr4.1:30009029-30009048 MS.gene52073:CDS 55.0%
! CAGCGCTACTGGTTGTCTTG+TGG + chr4.1:30009739-30009758 MS.gene52073:CDS 55.0%
! CCGATGCTGATTGTGGCGAA+AGG + chr4.1:30009698-30009717 MS.gene52073:CDS 55.0%
! GAAGCGCGTGTGAGGCTTTT+GGG + chr4.1:30009834-30009853 MS.gene52073:CDS 55.0%
! TGATTTGGGCGATAGGGGAC+TGG + chr4.1:30010435-30010454 MS.gene52073:intron 55.0%
! TTCACCTTGAACGGTGCCGA+TGG + chr4.1:30009104-30009123 MS.gene52073:CDS 55.0%
!! AGAAGCGCGTGTGAGGCTTT+TGG + chr4.1:30009833-30009852 MS.gene52073:CDS 55.0%
!! GATATGGGGTTTTGGCGTCC+GGG + chr4.1:30009587-30009606 MS.gene52073:intron 55.0%
!! TCACCTTGAACGGTGCCGAT+GGG + chr4.1:30009105-30009124 MS.gene52073:CDS 55.0%
ATCCCCATCCACAGCCTCAC+AGG + chr4.1:30010818-30010837 MS.gene52073:intron 60.0%
CAACCCATCGGCACCGTTCA+AGG - chr4.1:30009111-30009130 None:intergenic 60.0%
CGCGCCACCTTCAAATCCAC+CGG - chr4.1:30009782-30009801 None:intergenic 60.0%
GACACTGACCGAACACGACC+CGG - chr4.1:30009608-30009627 None:intergenic 60.0%
GACCTGTGAGGCTGTGGATG+GGG - chr4.1:30010823-30010842 None:intergenic 60.0%
GGAAAAGTAGCATGCGCCGG+CGG + chr4.1:30009050-30009069 MS.gene52073:CDS 60.0%
GGACCTGTGAGGCTGTGGAT+GGG - chr4.1:30010824-30010843 None:intergenic 60.0%
GGAGAAGATACAACCGGGGG+AGG - chr4.1:30010884-30010903 None:intergenic 60.0%
GTGGATTTGAAGGTGGCGCG+TGG + chr4.1:30009782-30009801 MS.gene52073:CDS 60.0%
TGAAGGTGGCGCGTGGGAAT+GGG + chr4.1:30009789-30009808 MS.gene52073:CDS 60.0%
TGGACCTGTGAGGCTGTGGA+TGG - chr4.1:30010825-30010844 None:intergenic 60.0%
TTCGACCCGACCACCCTTTC+GGG - chr4.1:30008959-30008978 None:intergenic 60.0%
TTGAAGGTGGCGCGTGGGAA+TGG + chr4.1:30009788-30009807 MS.gene52073:CDS 60.0%
TTTGGCGTCCGGGTCGTGTT+CGG + chr4.1:30009597-30009616 MS.gene52073:intron 60.0%
! TGCGTGTAGAAGCGCGTGTG+AGG + chr4.1:30009826-30009845 MS.gene52073:CDS 60.0%
!! CTTGAACGGTGCCGATGGGT+TGG + chr4.1:30009109-30009128 MS.gene52073:CDS 60.0%
!! GTGAATCCGGTGGTGGGTAG+CGG - chr4.1:30008903-30008922 None:intergenic 60.0%
!!! GCCGGCGCATGCTACTTTTC+CGG - chr4.1:30009051-30009070 None:intergenic 60.0%
AGAGGTGGCTGCAGCGCTAC+TGG + chr4.1:30009728-30009747 MS.gene52073:CDS 65.0%
CGGCGGTGGAGCTAAACCTC+CGG + chr4.1:30009067-30009086 MS.gene52073:CDS 65.0%
CGTGGGAATGGGAGTGGCAG+TGG + chr4.1:30009800-30009819 MS.gene52073:CDS 65.0%
GCGAAAGGAGGGACGAGAGG+TGG + chr4.1:30009713-30009732 MS.gene52073:CDS 65.0%
GTGGCGAAAGGAGGGACGAG+AGG + chr4.1:30009710-30009729 MS.gene52073:CDS 65.0%
! AAAGTAGCATGCGCCGGCGG+TGG + chr4.1:30009053-30009072 MS.gene52073:CDS 65.0%
! CGGAGGTTTAGCTCCACCGC+CGG - chr4.1:30009069-30009088 None:intergenic 65.0%
! GTGGCGCCGGAGAGTAATCC+TGG - chr4.1:30008873-30008892 None:intergenic 65.0%
!! AATCCGGTGGTGGGTAGCGG+CGG - chr4.1:30008900-30008919 None:intergenic 65.0%
GTGGCGCGTGGGAATGGGAG+TGG + chr4.1:30009794-30009813 MS.gene52073:CDS 70.0%
TAGCGGCGGTGAAGTGGCGC+CGG - chr4.1:30008886-30008905 None:intergenic 70.0%
TCACCGCCGCTACCCACCAC+CGG + chr4.1:30008894-30008913 MS.gene52073:CDS 70.0%
! GGTGGGTAGCGGCGGTGAAG+TGG - chr4.1:30008892-30008911 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 30008660 30011706 30008660 ID=MS.gene52073
chr4.1 mRNA 30008660 30011706 30008660 ID=MS.gene52073.t1;Parent=MS.gene52073
chr4.1 exon 30008660 30008720 30008660 ID=MS.gene52073.t1.exon1;Parent=MS.gene52073.t1
chr4.1 CDS 30008660 30008720 30008660 ID=cds.MS.gene52073.t1;Parent=MS.gene52073.t1
chr4.1 exon 30008817 30009158 30008817 ID=MS.gene52073.t1.exon2;Parent=MS.gene52073.t1
chr4.1 CDS 30008817 30009158 30008817 ID=cds.MS.gene52073.t1;Parent=MS.gene52073.t1
chr4.1 exon 30009687 30010041 30009687 ID=MS.gene52073.t1.exon3;Parent=MS.gene52073.t1
chr4.1 CDS 30009687 30010041 30009687 ID=cds.MS.gene52073.t1;Parent=MS.gene52073.t1
chr4.1 exon 30011484 30011706 30011484 ID=MS.gene52073.t1.exon4;Parent=MS.gene52073.t1
chr4.1 CDS 30011484 30011706 30011484 ID=cds.MS.gene52073.t1;Parent=MS.gene52073.t1
Gene Sequence

>MS.gene52073

ATGGGTCGATTTCTTCTCTTTCTCATTTTTCTCAGCTTCCTTACATTATCTTTCCTCTCAGGTAAACAATCTTCGTAAACTCTCAATTTTCAAAAATTGCACTTTAGTCTCTAAATTTTAACTTCACTTTGCTATTTGGTCCTTGAATTATGTTCAGAGGTACAAACAACGTCGTTCAAGATTGTAAACAAGTGCCGTTACACAATATGGCCAGGATTACTCTCCGGCGCCACTTCACCGCCGCTACCCACCACCGGATTCACTCTCAAGAGTGGAAATTCAAGGACTATACAAATCCCGAAAGGGTGGTCGGGTCGAATATGGGCACGAACTCTCTGCGGTCAAGACTCTGACAGAAAGTTTTCATGTATAACTGCCGACTGTGGCTCCGGAAAAGTAGCATGCGCCGGCGGTGGAGCTAAACCTCCGGCAACATTAGCGGAGTTCACCTTGAACGGTGCCGATGGGTTGGACTTCTACGACGTGAGTTTGGTTGACGGTAAGTGTGTTCGGTGTCTAACACATGTCAGTATCATTGAATTGTATCTATATAAAGCACGGATTAGGCATGTCTGGTGTCATATACTTGTGGTGTCCGACACCAACACACCAACACACGTGATTACATTGAATTATTTTATTTTCTAAAAATATTGTTATTATTGGTATAAAGGTTTCACCTTTCTTCAAATTTGATGAAATAGTCAAGTTATTGTTCATTAGCTATATAATCATCTTTCTTTGAGTATTACTTACACTAGTCAAATGAACTATAGCAAGACTTTGCTATCAAGTTAAGTAAGGTTAGATAACTCATTACCCATTGGTCAACAAACTGCATTACTAGGATTCCCAACATAAGCTTCATCAGAGTTACATTTGATTCAATTGGAAACTGGAGGGTTCTATCTATAGGGCTTCTATGATGATATGGGGTTTTGGCGTCCGGGTCGTGTTCGGTCAGTGTCTAAGTATGTTTTTATATAATTATTATATTGTTGTCCTAAAATTTCTTTGTGCTTGATAGGTTATAATATTCCGATGCTGATTGTGGCGAAAGGAGGGACGAGAGGTGGCTGCAGCGCTACTGGTTGTCTTGTGGATCTTAATGGTGGTTGTCCGGTGGATTTGAAGGTGGCGCGTGGGAATGGGAGTGGCAGTGGCGTTGCGTGTAGAAGCGCGTGTGAGGCTTTTGGGGATCCTCGCTATTGTTGTAGTGAGGAGTATTCTACGCCTGACACGTGTGGTCCTTCTATTTACTCGCTGTTTTTTAAACATGCTTGCCCACGCTCTTATAGCTACGCGTATGATGATAAGACCAGTACTTACACATGTGCTTCTGCTAACTATTTGATCGTGTTTTGCCCCTTGCCTTATACAAGGTACATACTCTCTTGACTCTCTCATCATTAGCTTCATAACCATTTTTTTAGCTTTTGATTATGCATGAGTTGTTTTGTTAGAGTAAGGGCACCTATGTATTTTAATTAGAGACTATGATTGCTATGGAAGCTCAAGCCAGTTGGATGATGTGCCAAATCCACATTTGCACATGTTTTGTGGACTGGAATTAAGAGTTGAGATATTCTTCATTTCACAGAAAACTCAAAAGAAATAGAGTTTCATTATAACATAGTTTTATGTTTATAAAGTCATATAAATATTTAATGTATGTCACATATTTTCAAAATGTATTTCTATATGAATACGAATATATCTATAGTGATAGGAAAAAAAACGGAGAAGATATCTACTCGAATTAAAGGGGTATTGGTTGATTTGGGCGATAGGGGACTGGGAGCATTTTTTGGTGTTACTACTATTGTGTATATATGCTCCAATGAAATGAATGGTTACCATATGCTAATAATTGGATTATTTCTATCAACATGGCGAGGCACAAGTGATTGATAGTTGAGTCCCTTAACCATTTGTTCCAAAGTTCGATTATTGACTGGTGTTATGGAAAAACATTTGTTGGGAGTTGGGAGAGGTCTTTGCAAGAGGATGCCTTTGATTTAGCAACAAAAAAGAGTCAGATAACATAGGAAAAGAAGATTAGTTTTGTACGACCATTGACCGAACACCGACTACAGAAAAACCATTTTCTACCTTGAATTATGAAAAATAGTTGATTATTTGCATTCTAAGCAATGAAATCCCCATCCACAGCCTCACAGGTCCAAATTACACGGGCTTACATCATACTTTTGTGAATACCCCTCCCCCGGTTGTATCTTCTCCGCAATTTTATATTAGTCATGGGAAAAATATGGTCAGACCTACATGGGTAAAATGGCCAAATGCAGATTACCGGATTAATATGCCTATATTTTAATGTTATGTTAGGGATCCCAAGTTGAATAAATAAAAGTGTTTAATATGGTTTCTAAGCCATGAGGCTCTTCCACACGTAGTGTACTAGTCTCTGGAGCTGCTAGTAGCCTCTTTCTCGAATTCAATTTTATTGTCTAATCTCTCAAACATAAAAAATAAATATGAAATGAACTTGAAATCTTTATTCATGTTCTGCACACGTATCCACATATGTAAAATATGCTTAAAAAATATGCATGCCTTAAAACGTCTTTTATATGTGAGCTTTCTTCCACTAAGTTTCCAAACTTGCTTTTCCTTGTGGTGTTTGGATTTTCCTTGTTGTTTTTTCTTGTAATGGCAAACATCCCTCACTCAAATCACATAAGACAATTTTTTGGGGACATTTACGTCTTTATTAGGTGAATATTTTGTGTACTTCTTTTGAGTAGTTATTATAATTTATAGCATTAATTTATGCATGTATCTTCTGTGGCCTTTTGAGCAGCCAAAAAGTGTTGGGAGCAAGGAAAGATGGAGCACCACTTCCTCTTGTAAACAAAACTATGATGTACTTGTCAAAACAACATTCTGGCGGTTCTTCATCGAAAGGTCTGATCCAAACGCAGATTATAGCTTATGTTACCTCTATTGCTGTGGCGTTTTTCCTGTCATGCCCTTTTAACACTGTTTATGGCTCCCTTTGTATGGACTCTTCAGGCAGAAAGTAA
Protein sequence

>MS.gene52073.t1

MGRFLLFLIFLSFLTLSFLSEVQTTSFKIVNKCRYTIWPGLLSGATSPPLPTTGFTLKSGNSRTIQIPKGWSGRIWARTLCGQDSDRKFSCITADCGSGKVACAGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNIPMLIVAKGGTRGGCSATGCLVDLNGGCPVDLKVARGNGSGSGVACRSACEAFGDPRYCCSEEYSTPDTCGPSIYSLFFKHACPRSYSYAYDDKTSTYTCASANYLIVFCPLPYTSQKVLGARKDGAPLPLVNKTMMYLSKQHSGGSSSKGLIQTQIIAYVTSIAVAFFLSCPFNTVYGSLCMDSSGRK