AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52366


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52366.t1 MTR_3g074390 78.320 512 106 1 1 507 1 512 0.0 835
MS.gene52366.t1 MTR_3g074410 76.817 509 116 1 1 507 1 509 0.0 813
MS.gene52366.t1 MTR_3g074270 68.136 499 138 2 1 499 1 478 0.0 702
MS.gene52366.t1 MTR_3g074340 96.584 322 11 0 186 507 19 340 0.0 634
MS.gene52366.t1 MTR_3g074370 96.273 322 12 0 186 507 19 340 0.0 631
MS.gene52366.t1 MTR_3g074320 95.652 322 14 0 186 507 19 340 0.0 629
MS.gene52366.t1 MTR_3g074380 77.596 366 79 2 1 363 1 366 0.0 584
MS.gene52366.t1 MTR_3g008160 51.896 501 231 7 8 502 6 502 0.0 536
MS.gene52366.t1 MTR_3g008170 52.353 510 227 7 5 501 4 510 0.0 522
MS.gene52366.t1 MTR_5g006070 50.101 495 237 7 15 503 14 504 2.45e-178 511
MS.gene52366.t1 MTR_0204s0020 49.072 485 242 4 12 495 10 490 1.47e-175 503
MS.gene52366.t1 MTR_5g041550 51.176 510 242 5 1 505 1 508 4.65e-174 500
MS.gene52366.t1 MTR_3g074400 59.161 453 131 6 50 481 1 420 1.53e-172 493
MS.gene52366.t1 MTR_0009s0370 49.501 501 245 6 8 503 7 504 1.35e-171 494
MS.gene52366.t1 MTR_0204s0020 48.454 485 242 5 12 495 10 487 1.60e-171 493
MS.gene52366.t1 MTR_3g093010 51.282 507 240 5 4 505 3 507 9.68e-171 491
MS.gene52366.t1 MTR_3g008160 51.204 457 215 6 50 502 1 453 1.54e-169 486
MS.gene52366.t1 MTR_1g038630 47.714 503 259 3 1 501 1 501 6.61e-169 487
MS.gene52366.t1 MTR_5g082540 48.185 496 251 4 10 501 8 501 3.31e-168 485
MS.gene52366.t1 MTR_7g091690 48.697 499 247 5 1 494 1 495 1.23e-167 483
MS.gene52366.t1 MTR_5g094760 49.098 499 245 5 1 494 1 495 3.03e-167 483
MS.gene52366.t1 MTR_4g116790 46.215 502 265 4 3 503 7 504 7.12e-167 482
MS.gene52366.t1 MTR_0204s0040 46.247 493 260 4 3 494 9 497 2.31e-165 478
MS.gene52366.t1 MTR_4g091370 53.074 488 223 5 15 498 15 500 1.19e-164 476
MS.gene52366.t1 MTR_1g104750 46.521 503 260 7 1 498 1 499 8.41e-164 473
MS.gene52366.t1 MTR_4g116770 46.247 493 260 4 3 494 205 693 1.27e-162 478
MS.gene52366.t1 MTR_3g023480 48.089 497 251 5 15 506 13 507 2.06e-162 470
MS.gene52366.t1 MTR_1g104770 45.726 503 265 6 1 498 1 500 9.57e-162 468
MS.gene52366.t1 MTR_1g104780 47.826 506 253 8 1 500 1 501 3.40e-161 468
MS.gene52366.t1 MTR_5g006070 49.130 460 224 7 50 503 1 456 5.92e-161 465
MS.gene52366.t1 MTR_3g007910 48.795 498 220 7 4 498 3 468 3.14e-158 458
MS.gene52366.t1 MTR_4g090600 51.378 508 237 6 7 506 3 508 2.12e-155 452
MS.gene52366.t1 MTR_1g038600 45.509 501 255 4 1 501 1 483 1.03e-154 450
MS.gene52366.t1 MTR_6g087040 46.245 506 262 8 1 500 1 502 2.50e-154 450
MS.gene52366.t1 MTR_6g088375 46.245 506 262 8 1 500 1 502 2.50e-154 450
MS.gene52366.t1 MTR_3g093060 50.552 453 216 5 50 496 1 451 1.80e-153 446
MS.gene52366.t1 MTR_8g102860 45.547 494 262 6 15 505 18 507 4.09e-153 447
MS.gene52366.t1 MTR_8g102860 45.534 459 243 6 50 505 1 455 9.12e-141 414
MS.gene52366.t1 MTR_4g116790 44.875 361 196 3 3 362 7 365 1.06e-110 333
MS.gene52366.t1 MTR_3g074330 92.405 158 5 1 1 151 1 158 2.37e-93 281
MS.gene52366.t1 MTR_3g074360 92.405 158 5 1 1 151 1 158 2.37e-93 281
MS.gene52366.t1 MTR_3g074310 91.772 158 6 1 1 151 1 158 1.41e-92 280
MS.gene52366.t1 MTR_4g069500 30.739 501 299 10 27 505 34 508 1.13e-59 205
MS.gene52366.t1 MTR_4g072030 30.816 490 291 10 27 495 31 493 3.18e-59 204
MS.gene52366.t1 MTR_4g069500 32.569 436 265 8 92 505 30 458 6.64e-59 202
MS.gene52366.t1 MTR_8g077890 31.365 491 280 13 28 490 24 485 4.69e-57 197
MS.gene52366.t1 MTR_6g088450 31.545 466 275 12 28 477 63 500 2.19e-56 196
MS.gene52366.t1 MTR_3g116240 30.864 486 289 11 27 489 32 493 2.58e-56 196
MS.gene52366.t1 MTR_8g103500 28.252 492 306 10 12 483 3 467 9.54e-55 191
MS.gene52366.t1 MTR_2g013310 28.903 474 301 8 24 487 53 500 1.20e-51 184
MS.gene52366.t1 MTR_2g013310 29.829 409 271 5 88 487 26 427 9.10e-51 179
MS.gene52366.t1 MTR_5g075300 29.796 490 289 12 28 490 24 485 6.64e-49 176
MS.gene52366.t1 MTR_7g446340 27.122 483 312 10 20 490 51 505 6.08e-48 174
MS.gene52366.t1 MTR_6g007340 27.122 483 312 10 20 490 51 505 6.08e-48 174
MS.gene52366.t1 MTR_5g096000 51.685 178 68 1 4 181 3 162 2.80e-47 166
MS.gene52366.t1 MTR_5g096000 51.515 132 63 1 368 498 168 299 1.20e-33 129
MS.gene52366.t1 MTR_8g077300 28.010 407 276 4 82 483 79 473 1.20e-44 164
MS.gene52366.t1 MTR_4g077740 28.721 477 301 12 22 483 44 496 3.51e-44 163
MS.gene52366.t1 MTR_7g094450 28.747 407 274 5 79 483 77 469 6.84e-44 161
MS.gene52366.t1 MTR_8g077310 27.861 402 283 2 82 483 87 481 1.91e-43 160
MS.gene52366.t1 MTR_8g077310 27.621 391 276 2 93 483 1 384 5.76e-43 157
MS.gene52366.t1 MTR_3g084110 25.833 480 320 10 34 506 39 489 8.25e-41 153
MS.gene52366.t1 MTR_7g094110 28.218 404 274 6 82 483 82 471 6.28e-40 150
MS.gene52366.t1 MTR_1g116660 26.392 413 287 8 102 506 98 501 4.38e-39 149
MS.gene52366.t1 MTR_5g020270 26.799 403 286 4 82 483 90 484 4.86e-39 148
MS.gene52366.t1 MTR_7g082270 26.305 479 318 10 9 483 51 498 5.25e-39 149
MS.gene52366.t1 MTR_7g005910 27.292 469 309 10 29 490 39 482 7.83e-39 148
MS.gene52366.t1 MTR_6g018790 26.850 473 309 9 16 483 98 538 8.83e-39 149
MS.gene52366.t1 MTR_5g020270 26.531 392 279 4 93 483 1 384 1.70e-38 145
MS.gene52366.t1 MTR_7g113960 27.160 405 275 7 82 483 67 454 2.20e-38 146
MS.gene52366.t1 MTR_7g113970 25.980 408 282 6 82 485 102 493 2.69e-38 147
MS.gene52366.t1 MTR_5g019870 26.879 439 293 9 75 490 49 482 1.84e-37 144
MS.gene52366.t1 MTR_2g020710 27.586 406 273 7 83 483 1 390 2.33e-37 142
MS.gene52366.t1 MTR_2g020710 27.518 407 274 7 82 483 89 479 6.46e-37 142
MS.gene52366.t1 MTR_1g116650 26.733 404 273 7 107 505 146 531 1.75e-36 142
MS.gene52366.t1 MTR_4g069500 30.462 325 197 8 202 505 3 319 4.33e-35 134
MS.gene52366.t1 MTR_4g118610 26.034 411 275 8 82 483 92 482 9.51e-35 136
MS.gene52366.t1 MTR_7g082270 26.230 427 281 9 9 432 51 446 1.80e-34 135
MS.gene52366.t1 MTR_1g022315 25.610 410 283 5 82 483 89 484 2.88e-34 135
MS.gene52366.t1 MTR_0064s0040 47.651 149 65 2 4 151 5 141 5.01e-34 126
MS.gene52366.t1 MTR_1g022315 25.000 396 281 4 93 483 1 385 1.05e-33 132
MS.gene52366.t1 MTR_3g080240 27.273 462 298 13 28 483 98 527 1.11e-33 134
MS.gene52366.t1 MTR_5g077580 24.581 537 291 11 34 483 37 546 2.26e-33 133
MS.gene52366.t1 MTR_2g049020 30.792 341 208 8 34 364 37 359 3.04e-33 133
MS.gene52366.t1 MTR_2g048720 29.882 338 213 8 34 365 37 356 6.19e-33 132
MS.gene52366.t1 MTR_5g020270 25.743 404 268 7 82 483 90 463 1.02e-32 130
MS.gene52366.t1 MTR_7g094110 27.047 403 260 7 82 483 82 451 1.05e-32 130
MS.gene52366.t1 MTR_4g013205 26.180 466 300 11 28 485 41 470 1.09e-32 130
MS.gene52366.t1 MTR_8g077310 27.817 284 198 2 82 365 87 363 1.47e-29 120
MS.gene52366.t1 MTR_6g087910 25.369 406 268 9 92 485 102 484 2.39e-28 118
MS.gene52366.t1 MTR_2g026160 29.710 276 184 3 106 372 94 368 2.42e-28 119
MS.gene52366.t1 MTR_7g113960 27.407 270 188 3 82 351 67 328 2.54e-26 110
MS.gene52366.t1 MTR_7g113970 26.277 274 194 3 82 355 102 367 5.40e-26 110
MS.gene52366.t1 MTR_2g020710 26.627 338 227 7 82 414 89 410 6.25e-26 110
MS.gene52366.t1 MTR_2g020710 27.715 267 184 4 82 347 89 347 1.06e-25 109
MS.gene52366.t1 MTR_2g020710 27.715 267 184 4 82 347 89 347 1.37e-25 108
MS.gene52366.t1 MTR_4g064820 26.741 359 234 8 22 363 95 441 2.64e-25 109
MS.gene52366.t1 MTR_4g118610 24.854 342 228 8 82 414 92 413 4.41e-24 105
MS.gene52366.t1 MTR_1g038620 34.375 160 86 3 201 360 50 190 4.65e-24 99.8
MS.gene52366.t1 MTR_1g114280 35.526 152 79 2 346 497 21 153 1.09e-21 92.0
MS.gene52366.t1 MTR_2g026140 25.648 347 218 8 29 365 30 346 2.02e-20 95.1
MS.gene52366.t1 MTR_3g116060 30.636 173 113 4 90 258 52 221 9.37e-17 84.0
MS.gene52366.t1 MTR_3g116060 27.586 232 147 6 263 481 488 711 3.08e-13 72.8
MS.gene52366.t1 MTR_3g118530 30.409 171 116 3 90 258 54 223 9.69e-16 80.9
MS.gene52366.t1 MTR_3g118530 27.727 220 139 5 274 481 510 721 4.18e-12 69.3
MS.gene52366.t1 MTR_3g118530 30.409 171 116 3 90 258 54 223 2.04e-15 79.3
MS.gene52366.t1 MTR_5g044910 28.902 173 120 3 83 253 47 218 4.70e-15 78.6
MS.gene52366.t1 MTR_5g024740 27.119 236 150 7 21 253 2 218 1.06e-14 77.4
MS.gene52366.t1 MTR_8g073100 27.933 179 126 3 77 253 41 218 1.97e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52366.t1 AT1G34580 62.948 502 182 3 1 498 1 502 0.0 642
MS.gene52366.t1 AT1G34580 62.168 452 168 2 50 498 1 452 0.0 577
MS.gene52366.t1 AT1G11260 52.745 510 235 5 1 506 1 508 0.0 526
MS.gene52366.t1 AT3G19930 52.200 500 234 4 4 500 3 500 8.13e-180 515
MS.gene52366.t1 AT3G19930 52.200 500 234 4 4 500 3 500 8.13e-180 515
MS.gene52366.t1 AT5G26340 48.919 509 252 6 1 504 1 506 9.11e-177 508
MS.gene52366.t1 AT4G21480 51.992 502 237 4 1 500 1 500 3.56e-176 505
MS.gene52366.t1 AT3G19940 50.607 494 235 5 19 505 21 512 1.70e-175 504
MS.gene52366.t1 AT5G23270 51.491 503 233 7 1 496 1 499 1.42e-174 501
MS.gene52366.t1 AT4G02050 48.141 511 253 6 1 506 1 504 7.04e-174 499
MS.gene52366.t1 AT4G02050 48.141 511 253 6 1 506 1 504 7.04e-174 499
MS.gene52366.t1 AT1G50310 50.722 485 234 5 19 500 21 503 4.41e-171 493
MS.gene52366.t1 AT5G61520 47.531 486 244 5 17 495 18 499 9.49e-162 469
MS.gene52366.t1 AT5G26250 45.582 498 265 5 9 504 8 501 1.39e-154 450
MS.gene52366.t1 AT3G05960 44.800 500 270 5 9 506 7 502 4.23e-151 441
MS.gene52366.t1 AT5G61520 46.696 454 231 5 49 495 2 451 3.59e-147 430
MS.gene52366.t1 AT1G77210 43.222 509 278 9 1 503 1 504 5.04e-147 431
MS.gene52366.t1 AT1G77210 43.222 509 278 9 1 503 1 504 5.04e-147 431
MS.gene52366.t1 AT1G07340 43.426 502 275 6 1 498 1 497 1.17e-139 412
MS.gene52366.t1 AT1G50310 49.716 352 173 4 151 500 11 360 2.82e-119 355
MS.gene52366.t1 AT1G77210 40.845 355 203 7 151 503 6 355 1.06e-97 299
MS.gene52366.t1 AT3G18830 31.315 479 283 9 27 483 40 494 6.23e-59 204
MS.gene52366.t1 AT2G16120 30.539 501 301 13 27 505 30 505 2.44e-58 201
MS.gene52366.t1 AT2G16130 30.595 487 291 12 27 490 30 492 2.60e-56 196
MS.gene52366.t1 AT2G18480 31.702 470 270 11 38 483 37 479 1.27e-54 191
MS.gene52366.t1 AT4G36670 29.652 489 292 12 27 490 21 482 4.46e-52 184
MS.gene52366.t1 AT2G20780 27.463 477 310 10 20 487 51 500 6.93e-48 174
MS.gene52366.t1 AT2G20780 27.869 427 289 8 87 505 42 457 2.66e-46 168
MS.gene52366.t1 AT2G48020 28.676 408 273 6 82 486 68 460 8.21e-46 167
MS.gene52366.t1 AT2G48020 28.676 408 273 6 82 486 68 460 8.21e-46 167
MS.gene52366.t1 AT1G75220 27.861 402 283 2 82 483 88 482 5.21e-45 165
MS.gene52366.t1 AT1G54730 28.467 411 264 8 82 483 72 461 3.46e-44 162
MS.gene52366.t1 AT5G17010 29.436 479 297 12 21 483 45 498 2.26e-43 160
MS.gene52366.t1 AT5G17010 29.436 479 297 12 21 483 45 498 2.26e-43 160
MS.gene52366.t1 AT5G17010 29.436 479 297 12 21 483 45 498 2.26e-43 160
MS.gene52366.t1 AT5G16150 29.310 406 265 6 86 485 151 540 2.39e-41 156
MS.gene52366.t1 AT5G16150 29.310 406 265 6 86 485 151 540 2.39e-41 156
MS.gene52366.t1 AT5G16150 29.310 406 265 6 86 485 151 540 2.39e-41 156
MS.gene52366.t1 AT1G19450 26.866 402 287 2 82 483 89 483 3.43e-41 154
MS.gene52366.t1 AT1G08930 25.880 483 314 10 8 483 42 487 1.25e-40 153
MS.gene52366.t1 AT1G08930 25.880 483 314 10 8 483 42 487 1.25e-40 153
MS.gene52366.t1 AT1G08900 27.363 402 280 4 82 483 23 412 1.89e-40 151
MS.gene52366.t1 AT5G59250 29.278 485 291 13 22 483 97 552 2.96e-40 153
MS.gene52366.t1 AT1G08900 27.363 402 280 4 82 483 57 446 4.33e-40 150
MS.gene52366.t1 AT1G08900 27.363 402 280 4 82 483 65 454 5.37e-40 150
MS.gene52366.t1 AT1G08900 27.363 402 280 4 82 483 65 454 5.37e-40 150
MS.gene52366.t1 AT5G27350 26.980 404 279 5 84 485 73 462 8.13e-40 150
MS.gene52366.t1 AT1G54730 27.561 410 248 9 82 483 72 440 1.90e-39 149
MS.gene52366.t1 AT1G54730 28.649 370 234 8 82 442 72 420 2.84e-39 148
MS.gene52366.t1 AT3G05160 26.068 468 315 5 16 483 14 450 1.31e-38 147
MS.gene52366.t1 AT3G03090 30.435 414 260 9 85 483 98 498 1.69e-38 147
MS.gene52366.t1 AT3G05165 26.068 468 315 5 16 483 23 459 3.54e-38 145
MS.gene52366.t1 AT3G05165 26.068 468 315 5 16 483 23 459 3.54e-38 145
MS.gene52366.t1 AT3G05165 26.068 468 315 5 16 483 23 459 3.54e-38 145
MS.gene52366.t1 AT3G05400 26.667 405 283 5 82 485 66 457 5.28e-38 145
MS.gene52366.t1 AT3G05160 27.000 400 280 3 84 483 14 401 6.91e-38 144
MS.gene52366.t1 AT3G05160 27.000 400 280 3 84 483 14 401 6.91e-38 144
MS.gene52366.t1 AT4G04760 27.833 406 276 5 82 483 12 404 1.38e-37 143
MS.gene52366.t1 AT3G05400 29.032 372 249 6 116 485 79 437 1.65e-37 143
MS.gene52366.t1 AT4G04760 27.833 406 276 5 82 483 71 463 4.42e-37 143
MS.gene52366.t1 AT1G08890 28.218 404 274 8 82 483 67 456 2.87e-36 140
MS.gene52366.t1 AT1G08900 28.116 345 236 4 82 426 65 397 3.88e-36 139
MS.gene52366.t1 AT4G04750 26.895 409 275 6 82 483 76 467 4.34e-36 140
MS.gene52366.t1 AT4G04750 26.895 409 275 6 82 483 76 467 4.34e-36 140
MS.gene52366.t1 AT4G04760 27.654 405 275 5 82 483 71 460 6.63e-36 139
MS.gene52366.t1 AT4G04750 26.895 409 275 6 82 483 120 511 8.34e-36 140
MS.gene52366.t1 AT5G18840 25.558 403 287 4 82 483 84 474 1.18e-35 139
MS.gene52366.t1 AT3G05150 28.501 407 270 6 82 483 75 465 1.81e-35 138
MS.gene52366.t1 AT3G05150 28.501 407 270 6 82 483 75 465 1.81e-35 138
MS.gene52366.t1 AT2G43330 28.499 393 267 9 107 492 99 484 1.95e-35 139
MS.gene52366.t1 AT3G05150 28.501 407 270 6 82 483 75 465 2.16e-35 138
MS.gene52366.t1 AT3G05155 25.248 404 284 7 82 483 67 454 3.36e-35 137
MS.gene52366.t1 AT5G27360 25.250 400 287 4 84 483 77 464 3.63e-35 137
MS.gene52366.t1 AT5G27360 25.250 400 287 4 84 483 125 512 6.36e-35 137
MS.gene52366.t1 AT1G54730 27.642 369 218 9 82 442 72 399 1.46e-34 134
MS.gene52366.t1 AT1G54730 28.363 342 215 8 82 414 72 392 2.36e-34 134
MS.gene52366.t1 AT1G54730 28.363 342 215 8 82 414 72 392 2.36e-34 134
MS.gene52366.t1 AT1G30220 31.609 348 206 8 34 374 39 361 3.20e-34 136
MS.gene52366.t1 AT3G05165 26.034 411 273 5 16 426 23 402 4.43e-34 135
MS.gene52366.t1 AT3G05165 26.034 411 273 5 16 426 23 402 1.42e-33 133
MS.gene52366.t1 AT3G05165 26.034 411 273 5 16 426 23 402 1.42e-33 133
MS.gene52366.t1 AT5G27360 25.352 355 253 4 129 483 18 360 3.94e-33 130
MS.gene52366.t1 AT5G27360 25.352 355 253 4 129 483 18 360 3.94e-33 130
MS.gene52366.t1 AT1G79820 26.877 413 271 11 83 485 97 488 5.99e-32 129
MS.gene52366.t1 AT1G79820 26.877 413 271 11 83 485 97 488 5.99e-32 129
MS.gene52366.t1 AT1G67300 28.256 407 257 11 92 485 103 487 6.97e-32 128
MS.gene52366.t1 AT1G67300 28.256 407 257 11 92 485 103 487 6.97e-32 128
MS.gene52366.t1 AT1G54730 29.496 278 172 6 82 351 72 333 1.56e-31 124
MS.gene52366.t1 AT2G48020 27.915 283 195 3 82 363 68 342 1.82e-31 125
MS.gene52366.t1 AT1G67300 27.966 354 225 9 92 435 103 436 7.62e-31 125
MS.gene52366.t1 AT1G67300 27.966 354 225 9 92 435 103 436 7.62e-31 125
MS.gene52366.t1 AT4G16480 30.172 348 215 7 34 371 38 367 8.54e-31 126
MS.gene52366.t1 AT4G16480 30.172 348 215 7 34 371 38 367 8.54e-31 126
MS.gene52366.t1 AT4G16480 30.172 348 215 7 34 371 38 367 8.54e-31 126
MS.gene52366.t1 AT1G05030 25.160 469 313 12 21 483 77 513 1.49e-30 125
MS.gene52366.t1 AT1G67300 28.010 407 259 11 92 485 103 488 2.33e-30 124
MS.gene52366.t1 AT2G48020 27.174 276 193 2 82 357 68 335 2.86e-30 121
MS.gene52366.t1 AT1G54730 30.040 253 156 5 82 326 72 311 3.58e-30 120
MS.gene52366.t1 AT1G54730 30.040 253 156 5 82 326 72 311 3.58e-30 120
MS.gene52366.t1 AT1G05030 26.238 404 276 9 87 483 73 461 4.68e-30 123
MS.gene52366.t1 AT1G67300 28.909 339 211 9 92 420 103 421 5.33e-30 122
MS.gene52366.t1 AT1G67300 28.909 339 211 9 92 420 103 421 5.33e-30 122
MS.gene52366.t1 AT1G54730 30.040 253 156 5 82 326 72 311 7.06e-30 121
MS.gene52366.t1 AT3G20460 24.814 403 289 6 82 483 93 482 6.77e-29 119
MS.gene52366.t1 AT2G35740 26.437 348 230 5 34 372 37 367 1.59e-27 116
MS.gene52366.t1 AT1G08920 23.775 408 287 6 82 483 72 461 2.56e-27 115
MS.gene52366.t1 AT1G08920 22.906 406 300 5 82 483 72 468 3.70e-27 114
MS.gene52366.t1 AT1G79820 26.966 356 238 10 83 433 97 435 1.06e-26 113
MS.gene52366.t1 AT5G27360 23.442 337 246 4 84 420 77 401 9.39e-25 107
MS.gene52366.t1 AT5G17010 25.826 484 248 14 21 483 42 435 1.34e-23 103
MS.gene52366.t1 AT3G05155 23.985 271 193 4 82 351 67 325 1.50e-23 101
MS.gene52366.t1 AT1G08920 23.647 351 244 6 82 426 72 404 1.63e-23 103
MS.gene52366.t1 AT1G79820 25.799 407 235 11 83 485 97 440 1.10e-21 98.2
MS.gene52366.t1 AT3G51490 31.915 188 124 4 87 272 2 187 1.04e-20 96.3
MS.gene52366.t1 AT3G51490 27.155 232 150 6 262 481 440 664 2.93e-12 69.7
MS.gene52366.t1 AT3G51490 31.915 188 124 4 87 272 52 237 1.30e-20 95.9
MS.gene52366.t1 AT3G51490 31.915 188 124 4 87 272 52 237 1.34e-20 95.9
MS.gene52366.t1 AT3G51490 27.155 232 150 6 262 481 490 714 2.87e-12 69.7
MS.gene52366.t1 AT1G20840 27.749 191 135 3 90 278 52 241 3.84e-17 85.1
MS.gene52366.t1 AT1G20840 27.749 191 135 3 90 278 52 241 3.84e-17 85.1
MS.gene52366.t1 AT1G79820 25.753 365 204 11 125 485 77 378 6.21e-17 83.2
MS.gene52366.t1 AT4G35300 32.184 174 114 4 87 258 52 223 3.16e-16 82.4
MS.gene52366.t1 AT4G35300 27.830 212 131 6 283 481 508 710 7.73e-11 65.1
MS.gene52366.t1 AT4G35300 32.184 174 114 4 87 258 52 223 3.16e-16 82.4
MS.gene52366.t1 AT4G35300 27.830 212 131 6 283 481 508 710 7.73e-11 65.1
MS.gene52366.t1 AT4G35300 32.184 174 114 4 87 258 52 223 3.16e-16 82.4
MS.gene52366.t1 AT4G35300 27.830 212 131 6 283 481 508 710 7.73e-11 65.1
MS.gene52366.t1 AT4G35300 32.184 174 114 4 87 258 52 223 3.37e-16 82.0
MS.gene52366.t1 AT4G35300 27.830 212 131 6 283 481 518 720 9.59e-11 65.1
MS.gene52366.t1 AT4G35300 32.184 174 114 4 87 258 52 223 3.37e-16 82.0
MS.gene52366.t1 AT4G35300 27.830 212 131 6 283 481 518 720 9.59e-11 65.1
MS.gene52366.t1 AT4G35300 32.184 174 114 4 87 258 52 223 3.37e-16 82.0
MS.gene52366.t1 AT4G35300 27.830 212 131 6 283 481 518 720 9.59e-11 65.1
MS.gene52366.t1 AT4G35300 32.184 174 114 4 87 258 52 223 3.37e-16 82.0
MS.gene52366.t1 AT4G35300 27.830 212 131 6 283 481 518 720 9.59e-11 65.1
MS.gene52366.t1 AT4G35300 32.184 174 114 4 87 258 52 223 3.37e-16 82.0
MS.gene52366.t1 AT4G35300 27.830 212 131 6 283 481 518 720 9.59e-11 65.1
MS.gene52366.t1 AT4G35300 32.184 174 114 4 87 258 52 223 3.37e-16 82.0
MS.gene52366.t1 AT4G35300 27.830 212 131 6 283 481 518 720 9.59e-11 65.1
MS.gene52366.t1 AT4G35300 32.184 174 114 4 87 258 52 223 3.37e-16 82.0
MS.gene52366.t1 AT4G35300 27.830 212 131 6 283 481 518 720 9.59e-11 65.1
MS.gene52366.t1 AT4G35300 27.830 212 131 6 283 481 321 523 7.39e-11 65.1

Find 113 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTTGTTCTATGCATTT+TGG 0.096323 3.1:+60883400 MS.gene52366:CDS
GGTCGTATTCTTCTTGGTTT+TGG 0.158443 3.1:+60881885 MS.gene52366:CDS
TGGAGTCAATGTACATTATA+TGG 0.160882 3.1:+60883481 MS.gene52366:CDS
CTTGCTGGTGCTGCTATTAA+TGG 0.180124 3.1:+60881831 MS.gene52366:CDS
GGATATGACATTGGGATTTC+AGG 0.189475 3.1:+60881085 MS.gene52366:CDS
TTACTTTCTGCCGTTATTCT+TGG 0.197875 3.1:+60882774 MS.gene52366:CDS
TGTTTCTATGCCGCAGGTTT+TGG 0.241160 3.1:+60883219 MS.gene52366:CDS
ATTCTTGGTCGTATTCTTCT+TGG 0.241656 3.1:+60881879 MS.gene52366:CDS
CTCTTTCAATCTGTGGGTTT+AGG 0.277247 3.1:+60882738 MS.gene52366:CDS
GGTGGTGCCATCTTTCTTGC+TGG 0.282200 3.1:+60881816 MS.gene52366:CDS
CTCTCAAAGATGGTCATAAA+TGG 0.284366 3.1:-60882624 None:intergenic
TTTGCAATGCTTTCCTGGCT+TGG 0.290814 3.1:-60882515 None:intergenic
CATTCTATTGCTTGTCTGTC+TGG 0.306011 3.1:+60882878 MS.gene52366:CDS
AATATTGCTATGCTCATTCT+TGG 0.318012 3.1:+60881864 MS.gene52366:CDS
TATGGGGCAAACATTGGTTT+TGG 0.323870 3.1:+60883499 MS.gene52366:CDS
CTGAAAGCACCTCGCCATTT+TGG 0.328065 3.1:-60882303 None:intergenic
GCACCTTCCAATGGCTTTGA+TGG 0.330273 3.1:+60881001 MS.gene52366:CDS
CTGAAATCGCTCCACCAAAA+TGG 0.334485 3.1:+60882289 MS.gene52366:CDS
ATGCTATGCCACTTCAAGTT+TGG 0.341229 3.1:+60883375 MS.gene52366:CDS
CGAAGATTCTTGTTCATTAC+GGG 0.343244 3.1:+60882852 MS.gene52366:CDS
GCATCTAGTGGACTCATTCT+TGG 0.350307 3.1:+60881064 MS.gene52366:CDS
CGCCAACTCCTATGAAGAAT+TGG 0.355831 3.1:-60882335 None:intergenic
GGTCTTGGGGCCCACTCACC+TGG 0.356458 3.1:+60883244 MS.gene52366:CDS
TCGAAGATTCTTGTTCATTA+CGG 0.369531 3.1:+60882851 MS.gene52366:CDS
GGAGTCAATGTACATTATAT+GGG 0.376356 3.1:+60883482 MS.gene52366:CDS
ACAGGCTTCCAATTCTTCAT+AGG 0.386056 3.1:+60882327 MS.gene52366:CDS
GGTGTCTGCTTTGCTAGCTT+TGG 0.387628 3.1:+60883131 MS.gene52366:CDS
GCTGCCTTTCTTAGAATATC+CGG 0.392951 3.1:-60881648 None:intergenic
ATTTCTCAATAAATTCTTCC+CGG 0.399065 3.1:+60881629 MS.gene52366:CDS
GCTTTGGCGACTGGTGTTGA+TGG 0.405109 3.1:+60883147 MS.gene52366:CDS
ACCAACTGCTATACTTTGTC+CGG 0.407613 3.1:-60883307 None:intergenic
GGGAAGAATTTATTGAGAAA+TGG 0.413138 3.1:-60881627 None:intergenic
TGGGGCTGGCGACTCTCTCT+TGG 0.414296 3.1:+60882402 MS.gene52366:CDS
TGACTCCAAAGCAATTCCTT+TGG 0.421772 3.1:-60883466 None:intergenic
GCCACGTTCAACCAAGCTGC+TGG 0.422123 3.1:-60882484 None:intergenic
AAAGCAATTCCTTTGGTCTC+AGG 0.428168 3.1:-60883459 None:intergenic
GCTTTGCTAGCTTTGGCGAC+TGG 0.429820 3.1:+60883138 MS.gene52366:CDS
CCCACAGATTGAAAGAGGTT+TGG 0.431157 3.1:-60882732 None:intergenic
GGGCAATGCAACATTAGTAT+TGG 0.438296 3.1:+60883188 MS.gene52366:CDS
CTCATTCTTGGATATGACAT+TGG 0.445169 3.1:+60881076 MS.gene52366:CDS
TCATTCTTGGATATGACATT+GGG 0.445844 3.1:+60881077 MS.gene52366:CDS
TGAGACCAAAGGAATTGCTT+TGG 0.446229 3.1:+60883461 MS.gene52366:CDS
CCTGCAGCCGTGATGACAAT+TGG 0.446393 3.1:+60882438 MS.gene52366:CDS
CTTAATGAGTTCTTCTAACT+CGG 0.449686 3.1:-60882568 None:intergenic
CTAAACCCACAGATTGAAAG+AGG 0.452624 3.1:-60882737 None:intergenic
GCCATTGGAAGGTGCATCAA+TGG 0.461494 3.1:-60880993 None:intergenic
GCCATTGATGCACCTTCCAA+TGG 0.471156 3.1:+60880992 MS.gene52366:CDS
CTTCCCGGATATTCTAAGAA+AGG 0.471446 3.1:+60881644 MS.gene52366:CDS
TTCCAATTCTTCATAGGAGT+TGG 0.473326 3.1:+60882333 MS.gene52366:CDS
CCAAACCTCTTTCAATCTGT+GGG 0.474306 3.1:+60882732 MS.gene52366:CDS
CCAATTGTCATCACGGCTGC+AGG 0.478121 3.1:-60882438 None:intergenic
ACCAAACCTCTTTCAATCTG+TGG 0.482629 3.1:+60882731 MS.gene52366:CDS
CGAAGAAATACCATCGTGTT+GGG 0.482762 3.1:+60881795 MS.gene52366:CDS
TCGCCAGCCCCATGTGTGCT+TGG 0.486469 3.1:-60882391 None:intergenic
TGGCGAGGTGCTTTCAGCAC+AGG 0.490579 3.1:+60882309 MS.gene52366:CDS
TTACTATGTTTCTATGCCGC+AGG 0.496329 3.1:+60883213 MS.gene52366:CDS
TATCTTTCCATCAAAGCCAT+TGG 0.503256 3.1:-60881008 None:intergenic
AATTTCACTTGGAATTAGCC+AGG 0.504907 3.1:-60883262 None:intergenic
AGCAAAGTCACTGCAGCAAT+CGG 0.505312 3.1:+60881771 MS.gene52366:CDS
CTGCCAAGCACACATGGGGC+TGG 0.506056 3.1:+60882388 MS.gene52366:CDS
GCGATTTCAGAAAGGTATAG+TGG 0.506465 3.1:-60882276 None:intergenic
CGACAAAAGCAGTTGAGACT+AGG 0.517339 3.1:-60882818 None:intergenic
ACGTGACTGCCAAGCACACA+TGG 0.517471 3.1:+60882382 MS.gene52366:CDS
CTGCCTTTCTTAGAATATCC+GGG 0.528095 3.1:-60881647 None:intergenic
AGTTAGAAGAACTCATTAAG+TGG 0.530071 3.1:+60882571 MS.gene52366:CDS
TGCTGGGTGTGTCGGATATG+AGG 0.531185 3.1:-60882467 None:intergenic
AGGTTGAAAATGGCAGGTGG+AGG 0.531701 3.1:+60880965 None:intergenic
ACATTATATGGGGCAAACAT+TGG 0.535333 3.1:+60883493 MS.gene52366:CDS
AACCAAGCTGCTGGGTGTGT+CGG 0.542991 3.1:-60882475 None:intergenic
AGCAGCACCAGCAAGAAAGA+TGG 0.549935 3.1:-60881823 None:intergenic
TGTATCGTTGCTGCATCTAG+TGG 0.552864 3.1:+60881052 MS.gene52366:CDS
AGGACAAGGTTGAAAATGGC+AGG 0.553852 3.1:+60880959 None:intergenic
TCGATATTGTCTCTCAAAGA+TGG 0.553960 3.1:-60882634 None:intergenic
TCGAAGAAATACCATCGTGT+TGG 0.559517 3.1:+60881794 MS.gene52366:CDS
ATATCGACCTCACTTAATCA+TGG 0.560389 3.1:+60882650 MS.gene52366:CDS
ATCCGACACACCCAGCAGCT+TGG 0.562187 3.1:+60882473 MS.gene52366:CDS
AGAAAGCACCAAACTTGAAG+TGG 0.564619 3.1:-60883383 None:intergenic
CCACGTTCAACCAAGCTGCT+GGG 0.564694 3.1:-60882483 None:intergenic
GGTACAAAGGACATGTCAAA+GGG 0.571326 3.1:+60883168 MS.gene52366:CDS
GTGGCATGATAGACCAAGCC+AGG 0.572272 3.1:+60882502 MS.gene52366:CDS
TTAATGAGTTCTTCTAACTC+GGG 0.576345 3.1:-60882567 None:intergenic
TTGGTGGAGCGATTTCAGAA+AGG 0.579554 3.1:-60882284 None:intergenic
TTTAAGGGGAAAATTTCACT+TGG 0.579987 3.1:-60883273 None:intergenic
GGTTGAAAATGGCAGGTGGA+GGG 0.582573 3.1:+60880966 None:intergenic
TAACTCGGGCTCAACATCGA+TGG 0.583460 3.1:-60882553 None:intergenic
TGGTACAAAGGACATGTCAA+AGG 0.584833 3.1:+60883167 MS.gene52366:CDS
TTTCCATCAAAGCCATTGGA+AGG 0.597415 3.1:-60881004 None:intergenic
TTGGAATTAGCCAGGTGAGT+GGG 0.599809 3.1:-60883254 None:intergenic
GAGTCAATGTACATTATATG+GGG 0.599950 3.1:+60883483 MS.gene52366:CDS
CCCAGCAGCTTGGTTGAACG+TGG 0.607250 3.1:+60882483 MS.gene52366:CDS
GTTGACGAGTCCAAGAATAA+CGG 0.609102 3.1:-60882784 None:intergenic
AGATTCTTGTTCATTACGGG+TGG 0.611668 3.1:+60882855 MS.gene52366:CDS
GAAGGCACCAATTGTCATCA+CGG 0.622211 3.1:-60882445 None:intergenic
AAAAGCAGTTGAGACTAGGA+TGG 0.625099 3.1:-60882814 None:intergenic
GATATTCTAAGAAAGGCAGC+TGG 0.631809 3.1:+60881651 MS.gene52366:CDS
CGTGACTGCCAAGCACACAT+GGG 0.636076 3.1:+60882383 MS.gene52366:CDS
ACTCTCTCTTGGACTAGCAG+TGG 0.636345 3.1:+60882413 MS.gene52366:CDS
TTCAGGAGGTGTTACAACAA+TGG 0.637356 3.1:+60881602 MS.gene52366:intron
ATTCTTCATAGGAGTTGGCG+TGG 0.640365 3.1:+60882338 MS.gene52366:CDS
ATCGCTCCACCAAAATGGCG+AGG 0.643724 3.1:+60882294 MS.gene52366:CDS
GCTGGTGCTGCTATTAATGG+CGG 0.645779 3.1:+60881834 MS.gene52366:CDS
AGAAATACCATCGTGTTGGG+TGG 0.646781 3.1:+60881798 MS.gene52366:CDS
ACCGGACAAAGTATAGCAGT+TGG 0.647540 3.1:+60883306 MS.gene52366:CDS
CCAAGACCAACCAAAACCTG+CGG 0.648887 3.1:-60883229 None:intergenic
TCTGTGGGTTTAGGAAACAA+TGG 0.653625 3.1:+60882747 MS.gene52366:CDS
CTTGGAATTAGCCAGGTGAG+TGG 0.659267 3.1:-60883255 None:intergenic
TTGAGACTAGGATGGAAGCA+AGG 0.659590 3.1:-60882806 None:intergenic
ACAAGGTTGAAAATGGCAGG+TGG 0.665030 3.1:+60880962 None:intergenic
GCAAATGCCATGATTAAGTG+AGG 0.668086 3.1:-60882657 None:intergenic
GGGTGTGTCGGATATGAGGA+AGG 0.669650 3.1:-60882463 None:intergenic
GTGACTGCCAAGCACACATG+GGG 0.687081 3.1:+60882384 MS.gene52366:CDS
GATGGCACCACCCAACACGA+TGG 0.695361 3.1:-60881805 None:intergenic
GACTGGTGTTGATGGTACAA+AGG 0.706853 3.1:+60883155 MS.gene52366:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAGTTAAACTAAAAAAA+GGG - chr3.1:60882028-60882047 None:intergenic 10.0%
!! TAAATATTATTATACACATA+TGG - chr3.1:60882920-60882939 None:intergenic 10.0%
!! TTTATAATGAAAAAACAAAA+AGG - chr3.1:60881118-60881137 None:intergenic 10.0%
!! AAAAGTTAAACTAAAAAAAG+GGG - chr3.1:60882027-60882046 None:intergenic 15.0%
!! CTAAAAGTTAAACTAAAAAA+AGG - chr3.1:60882029-60882048 None:intergenic 15.0%
!!! AACATTTTTCATTAGTAAAA+AGG - chr3.1:60881576-60881595 None:intergenic 15.0%
!!! ACATTTTTCATTAGTAAAAA+GGG - chr3.1:60881575-60881594 None:intergenic 15.0%
!!! AGTAGAAAGATTTTAAATAA+AGG - chr3.1:60882177-60882196 None:intergenic 15.0%
!! TAGATGGAGAAATTAAAATA+AGG - chr3.1:60883048-60883067 None:intergenic 20.0%
!! TGAAAAATGTTATCAAATTC+AGG + chr3.1:60881585-60881604 MS.gene52366:intron 20.0%
!! TTAGTAGTACAAATCTAAAT+AGG + chr3.1:60881457-60881476 MS.gene52366:intron 20.0%
!!! AACATTGCTATTTAAAATTG+CGG - chr3.1:60882052-60882071 None:intergenic 20.0%
!!! AAGCAAATTCATTTTAAACA+TGG - chr3.1:60882218-60882237 None:intergenic 20.0%
!!! TTTTATCTTCAAAATGTACT+TGG + chr3.1:60881524-60881543 MS.gene52366:intron 20.0%
! AAAATGTTATCAAATTCAGG+AGG + chr3.1:60881588-60881607 MS.gene52366:intron 25.0%
! AGTACAAATCTAAATAGGTT+TGG + chr3.1:60881462-60881481 MS.gene52366:intron 25.0%
! ATATAACTCGAGAATTAAAC+TGG + chr3.1:60881315-60881334 MS.gene52366:intron 25.0%
! ATTGTATTACATGATGCAAT+TGG + chr3.1:60882242-60882261 MS.gene52366:intron 25.0%
! ATTTCTCAATAAATTCTTCC+CGG + chr3.1:60881629-60881648 MS.gene52366:CDS 25.0%
! TAAACTAAAAAAAGGGGAAA+TGG - chr3.1:60882021-60882040 None:intergenic 25.0%
! TAAAGGATGCTATCAAAATT+TGG - chr3.1:60882160-60882179 None:intergenic 25.0%
! TAAGGACGAAAATTTAGATA+CGG - chr3.1:60883030-60883049 None:intergenic 25.0%
!! TTTCTTGTTCTATGCATTTT+GGG + chr3.1:60883401-60883420 MS.gene52366:CDS 25.0%
!!! TTTTATTTTGTTGACGATGT+TGG - chr3.1:60881972-60881991 None:intergenic 25.0%
AATATTGCTATGCTCATTCT+TGG + chr3.1:60881864-60881883 MS.gene52366:CDS 30.0%
AATTAACTACAGAAAGATCG+TGG + chr3.1:60882990-60883009 MS.gene52366:intron 30.0%
AGATCACTATTTGAATCACA+TGG + chr3.1:60881272-60881291 MS.gene52366:intron 30.0%
AGCAAAAAACATGCTCTAAT+TGG - chr3.1:60881145-60881164 None:intergenic 30.0%
AGTTAGAAGAACTCATTAAG+TGG + chr3.1:60882571-60882590 MS.gene52366:CDS 30.0%
ATTATTAGTACCAATACCAC+AGG - chr3.1:60883080-60883099 None:intergenic 30.0%
CCTGTAAACTGTTGAAAAAA+CGG - chr3.1:60882687-60882706 None:intergenic 30.0%
CTGTAAACTGTTGAAAAAAC+GGG - chr3.1:60882686-60882705 None:intergenic 30.0%
CTTAATGAGTTCTTCTAACT+CGG - chr3.1:60882571-60882590 None:intergenic 30.0%
GAGTCAATGTACATTATATG+GGG + chr3.1:60883483-60883502 MS.gene52366:CDS 30.0%
GCATAAATATCATAACCTTG+TGG + chr3.1:60882133-60882152 MS.gene52366:intron 30.0%
GGAGTCAATGTACATTATAT+GGG + chr3.1:60883482-60883501 MS.gene52366:CDS 30.0%
GGGAAGAATTTATTGAGAAA+TGG - chr3.1:60881630-60881649 None:intergenic 30.0%
TCATTCTTGGATATGACATT+GGG + chr3.1:60881077-60881096 MS.gene52366:CDS 30.0%
TCGAAGATTCTTGTTCATTA+CGG + chr3.1:60882851-60882870 MS.gene52366:CDS 30.0%
TGATTCAAATAGTGATCTAC+TGG - chr3.1:60881270-60881289 None:intergenic 30.0%
TGGAGTCAATGTACATTATA+TGG + chr3.1:60883481-60883500 MS.gene52366:CDS 30.0%
TTAATGAGTTCTTCTAACTC+GGG - chr3.1:60882570-60882589 None:intergenic 30.0%
TTACATGATGCAATTGGAAA+AGG + chr3.1:60882248-60882267 MS.gene52366:intron 30.0%
TTTAAGGGGAAAATTTCACT+TGG - chr3.1:60883276-60883295 None:intergenic 30.0%
! ATCTTTAAGAACAAGAATCG+TGG - chr3.1:60882076-60882095 None:intergenic 30.0%
! CTTTCTTGTTCTATGCATTT+TGG + chr3.1:60883400-60883419 MS.gene52366:CDS 30.0%
!! AAAGCATTGCAAAAAATCAG+AGG + chr3.1:60882525-60882544 MS.gene52366:CDS 30.0%
!!! CGTTTTTTCAACAGTTTACA+GGG + chr3.1:60882685-60882704 MS.gene52366:CDS 30.0%
AATTTCACTTGGAATTAGCC+AGG - chr3.1:60883265-60883284 None:intergenic 35.0%
ACATTATATGGGGCAAACAT+TGG + chr3.1:60883493-60883512 MS.gene52366:CDS 35.0%
AGTCATTATACCTGTGGTAT+TGG + chr3.1:60883067-60883086 MS.gene52366:intron 35.0%
ATATCGACCTCACTTAATCA+TGG + chr3.1:60882650-60882669 MS.gene52366:CDS 35.0%
ATTCTTGGTCGTATTCTTCT+TGG + chr3.1:60881879-60881898 MS.gene52366:CDS 35.0%
CCCTTAAAAATCAGAACAAC+CGG + chr3.1:60883288-60883307 MS.gene52366:CDS 35.0%
CGAAGATTCTTGTTCATTAC+GGG + chr3.1:60882852-60882871 MS.gene52366:CDS 35.0%
CTATCAAAATTTGGACCACA+AGG - chr3.1:60882151-60882170 None:intergenic 35.0%
CTCATTCTTGGATATGACAT+TGG + chr3.1:60881076-60881095 MS.gene52366:CDS 35.0%
CTCTCAAAGATGGTCATAAA+TGG - chr3.1:60882627-60882646 None:intergenic 35.0%
GATCAATCATTGTTGTATCG+TGG + chr3.1:60882102-60882121 MS.gene52366:intron 35.0%
TATCTTTCCATCAAAGCCAT+TGG - chr3.1:60881011-60881030 None:intergenic 35.0%
TCGATATTGTCTCTCAAAGA+TGG - chr3.1:60882637-60882656 None:intergenic 35.0%
TTACTTTCTGCCGTTATTCT+TGG + chr3.1:60882774-60882793 MS.gene52366:CDS 35.0%
TTCCAATTCTTCATAGGAGT+TGG + chr3.1:60882333-60882352 MS.gene52366:CDS 35.0%
! CCGGTTGTTCTGATTTTTAA+GGG - chr3.1:60883291-60883310 None:intergenic 35.0%
! TCCGGTTGTTCTGATTTTTA+AGG - chr3.1:60883292-60883311 None:intergenic 35.0%
! TTCTTTTTACCTGAGACCAA+AGG + chr3.1:60883450-60883469 MS.gene52366:CDS 35.0%
!! CGGTTGTTCTGATTTTTAAG+GGG - chr3.1:60883290-60883309 None:intergenic 35.0%
!! GTCGTATTCTTCTTGGTTTT+GGG + chr3.1:60881886-60881905 MS.gene52366:CDS 35.0%
!!! ATTCTTCTTGGTTTTGGGAT+CGG + chr3.1:60881891-60881910 MS.gene52366:CDS 35.0%
!!! CCGTTTTTTCAACAGTTTAC+AGG + chr3.1:60882684-60882703 MS.gene52366:CDS 35.0%
!!! GATTTTTTGCAATGCTTTCC+TGG - chr3.1:60882523-60882542 None:intergenic 35.0%
AAAAGCAGTTGAGACTAGGA+TGG - chr3.1:60882817-60882836 None:intergenic 40.0%
AAAGCAATTCCTTTGGTCTC+AGG - chr3.1:60883462-60883481 None:intergenic 40.0%
ACAGGCTTCCAATTCTTCAT+AGG + chr3.1:60882327-60882346 MS.gene52366:CDS 40.0%
ACCAAACCTCTTTCAATCTG+TGG + chr3.1:60882731-60882750 MS.gene52366:CDS 40.0%
ACCAACTGCTATACTTTGTC+CGG - chr3.1:60883310-60883329 None:intergenic 40.0%
AGATTCTTGTTCATTACGGG+TGG + chr3.1:60882855-60882874 MS.gene52366:CDS 40.0%
CATGATGCAATTGGAAAAGG+CGG + chr3.1:60882251-60882270 MS.gene52366:intron 40.0%
CATTCTATTGCTTGTCTGTC+TGG + chr3.1:60882878-60882897 MS.gene52366:CDS 40.0%
CCAAACCTCTTTCAATCTGT+GGG + chr3.1:60882732-60882751 MS.gene52366:CDS 40.0%
CCACAGGTATAATGACTAGA+TGG - chr3.1:60883064-60883083 None:intergenic 40.0%
CCATCTAGTCATTATACCTG+TGG + chr3.1:60883061-60883080 MS.gene52366:intron 40.0%
CGAAGAAATACCATCGTGTT+GGG + chr3.1:60881795-60881814 MS.gene52366:CDS 40.0%
CTAAACCCACAGATTGAAAG+AGG - chr3.1:60882740-60882759 None:intergenic 40.0%
CTCTTTCAATCTGTGGGTTT+AGG + chr3.1:60882738-60882757 MS.gene52366:CDS 40.0%
CTGCCTTTCTTAGAATATCC+GGG - chr3.1:60881650-60881669 None:intergenic 40.0%
GCAAATGCCATGATTAAGTG+AGG - chr3.1:60882660-60882679 None:intergenic 40.0%
GCTGCCTTTCTTAGAATATC+CGG - chr3.1:60881651-60881670 None:intergenic 40.0%
GGATATGACATTGGGATTTC+AGG + chr3.1:60881085-60881104 MS.gene52366:CDS 40.0%
GGGCAATGCAACATTAGTAT+TGG + chr3.1:60883188-60883207 MS.gene52366:CDS 40.0%
GGTACAAAGGACATGTCAAA+GGG + chr3.1:60883168-60883187 MS.gene52366:CDS 40.0%
GTTGACGAGTCCAAGAATAA+CGG - chr3.1:60882787-60882806 None:intergenic 40.0%
TCGAAGAAATACCATCGTGT+TGG + chr3.1:60881794-60881813 MS.gene52366:CDS 40.0%
TCTGTGGGTTTAGGAAACAA+TGG + chr3.1:60882747-60882766 MS.gene52366:CDS 40.0%
TGACTCCAAAGCAATTCCTT+TGG - chr3.1:60883469-60883488 None:intergenic 40.0%
TGAGACCAAAGGAATTGCTT+TGG + chr3.1:60883461-60883480 MS.gene52366:CDS 40.0%
TGGTACAAAGGACATGTCAA+AGG + chr3.1:60883167-60883186 MS.gene52366:CDS 40.0%
TTTCCATCAAAGCCATTGGA+AGG - chr3.1:60881007-60881026 None:intergenic 40.0%
! AAGGGTGAGCTTTATGACTT+TGG - chr3.1:60881557-60881576 None:intergenic 40.0%
! ATGCTATGCCACTTCAAGTT+TGG + chr3.1:60883375-60883394 MS.gene52366:CDS 40.0%
! CTTCCCGGATATTCTAAGAA+AGG + chr3.1:60881644-60881663 MS.gene52366:CDS 40.0%
! GATATTCTAAGAAAGGCAGC+TGG + chr3.1:60881651-60881670 MS.gene52366:CDS 40.0%
! GATCTACTGGTTAGTGACTT+TGG - chr3.1:60881257-60881276 None:intergenic 40.0%
! GCGATTTCAGAAAGGTATAG+TGG - chr3.1:60882279-60882298 None:intergenic 40.0%
! GGTCGTATTCTTCTTGGTTT+TGG + chr3.1:60881885-60881904 MS.gene52366:CDS 40.0%
! TTACTATGTTTCTATGCCGC+AGG + chr3.1:60883213-60883232 MS.gene52366:CDS 40.0%
!! AGAAAGCACCAAACTTGAAG+TGG - chr3.1:60883386-60883405 None:intergenic 40.0%
!! GTTGACGCTTTGAAAGATTG+CGG + chr3.1:60883110-60883129 MS.gene52366:intron 40.0%
!! TCTCAACTGCTTTTGTCGAT+CGG + chr3.1:60882823-60882842 MS.gene52366:CDS 40.0%
!! TTCAGGAGGTGTTACAACAA+TGG + chr3.1:60881602-60881621 MS.gene52366:intron 40.0%
!!! TATGGGGCAAACATTGGTTT+TGG + chr3.1:60883499-60883518 MS.gene52366:CDS 40.0%
ACCGGACAAAGTATAGCAGT+TGG + chr3.1:60883306-60883325 MS.gene52366:CDS 45.0%
AGAAATACCATCGTGTTGGG+TGG + chr3.1:60881798-60881817 MS.gene52366:CDS 45.0%
AGCAAAGTCACTGCAGCAAT+CGG + chr3.1:60881771-60881790 MS.gene52366:CDS 45.0%
ATTCTTCATAGGAGTTGGCG+TGG + chr3.1:60882338-60882357 MS.gene52366:CDS 45.0%
ATTGTTGTATCGTGGTCGCT+GGG + chr3.1:60882110-60882129 MS.gene52366:intron 45.0%
CCCACAGATTGAAAGAGGTT+TGG - chr3.1:60882735-60882754 None:intergenic 45.0%
CGACAAAAGCAGTTGAGACT+AGG - chr3.1:60882821-60882840 None:intergenic 45.0%
CGCCAACTCCTATGAAGAAT+TGG - chr3.1:60882338-60882357 None:intergenic 45.0%
CTGAAATCGCTCCACCAAAA+TGG + chr3.1:60882289-60882308 MS.gene52366:CDS 45.0%
TGTATCGTTGCTGCATCTAG+TGG + chr3.1:60881052-60881071 MS.gene52366:CDS 45.0%
TTGAGACTAGGATGGAAGCA+AGG - chr3.1:60882809-60882828 None:intergenic 45.0%
TTGGAATTAGCCAGGTGAGT+GGG - chr3.1:60883257-60883276 None:intergenic 45.0%
TTGGTGGAGCGATTTCAGAA+AGG - chr3.1:60882287-60882306 None:intergenic 45.0%
TTTGCAATGCTTTCCTGGCT+TGG - chr3.1:60882518-60882537 None:intergenic 45.0%
!! ACTGCTTTTGTCGATCGGTT+TGG + chr3.1:60882828-60882847 MS.gene52366:CDS 45.0%
!! CTTGCTGGTGCTGCTATTAA+TGG + chr3.1:60881831-60881850 MS.gene52366:CDS 45.0%
!! GAAGGCACCAATTGTCATCA+CGG - chr3.1:60882448-60882467 None:intergenic 45.0%
!! GACTGGTGTTGATGGTACAA+AGG + chr3.1:60883155-60883174 MS.gene52366:CDS 45.0%
!! GCATCTAGTGGACTCATTCT+TGG + chr3.1:60881064-60881083 MS.gene52366:CDS 45.0%
!! TGTTTCTATGCCGCAGGTTT+TGG + chr3.1:60883219-60883238 MS.gene52366:CDS 45.0%
!!! TTTTGGCGGCGGTTTGTTAA+AGG + chr3.1:60883516-60883535 MS.gene52366:CDS 45.0%
!! TTATATTTATTTATTATTCT+AGG + chr3.1:60882937-60882956 MS.gene52366:intron 5.0%
AGCAGCACCAGCAAGAAAGA+TGG - chr3.1:60881826-60881845 None:intergenic 50.0%
CATTGTTGTATCGTGGTCGC+TGG + chr3.1:60882109-60882128 MS.gene52366:intron 50.0%
CCAAGACCAACCAAAACCTG+CGG - chr3.1:60883232-60883251 None:intergenic 50.0%
CTTGGAATTAGCCAGGTGAG+TGG - chr3.1:60883258-60883277 None:intergenic 50.0%
GCCATTGATGCACCTTCCAA+TGG + chr3.1:60880992-60881011 MS.gene52366:CDS 50.0%
GGTTAGTGACTTTGGCGAGT+CGG - chr3.1:60881249-60881268 None:intergenic 50.0%
TAACTCGGGCTCAACATCGA+TGG - chr3.1:60882556-60882575 None:intergenic 50.0%
TTGTTGTATCGTGGTCGCTG+GGG + chr3.1:60882111-60882130 MS.gene52366:intron 50.0%
! GCCATTGGAAGGTGCATCAA+TGG - chr3.1:60880996-60881015 None:intergenic 50.0%
! GGTGTCTGCTTTGCTAGCTT+TGG + chr3.1:60883131-60883150 MS.gene52366:CDS 50.0%
!! AAAGCACCTCGCCATTTTGG+TGG - chr3.1:60882303-60882322 None:intergenic 50.0%
!! ACTCTCTCTTGGACTAGCAG+TGG + chr3.1:60882413-60882432 MS.gene52366:CDS 50.0%
!! GCACCTTCCAATGGCTTTGA+TGG + chr3.1:60881001-60881020 MS.gene52366:CDS 50.0%
!! GCTGGTGCTGCTATTAATGG+CGG + chr3.1:60881834-60881853 MS.gene52366:CDS 50.0%
!! TCTATGCCGCAGGTTTTGGT+TGG + chr3.1:60883223-60883242 MS.gene52366:CDS 50.0%
!!! CGCAGGTTTTGGTTGGTCTT+GGG + chr3.1:60883230-60883249 MS.gene52366:CDS 50.0%
!!! CTGAAAGCACCTCGCCATTT+TGG - chr3.1:60882306-60882325 None:intergenic 50.0%
!!! GCAAACATTGGTTTTGGCGG+CGG + chr3.1:60883505-60883524 MS.gene52366:CDS 50.0%
!!! GCAGGTTTTGGTTGGTCTTG+GGG + chr3.1:60883231-60883250 MS.gene52366:CDS 50.0%
!!! GGGGCAAACATTGGTTTTGG+CGG + chr3.1:60883502-60883521 MS.gene52366:CDS 50.0%
AACCAAGCTGCTGGGTGTGT+CGG - chr3.1:60882478-60882497 None:intergenic 55.0%
ACGTGACTGCCAAGCACACA+TGG + chr3.1:60882382-60882401 MS.gene52366:CDS 55.0%
ATCGCTCCACCAAAATGGCG+AGG + chr3.1:60882294-60882313 MS.gene52366:CDS 55.0%
CCAATTGTCATCACGGCTGC+AGG - chr3.1:60882441-60882460 None:intergenic 55.0%
CCACGTTCAACCAAGCTGCT+GGG - chr3.1:60882486-60882505 None:intergenic 55.0%
CCTGCAGCCGTGATGACAAT+TGG + chr3.1:60882438-60882457 MS.gene52366:CDS 55.0%
CGTGACTGCCAAGCACACAT+GGG + chr3.1:60882383-60882402 MS.gene52366:CDS 55.0%
GGGTGTGTCGGATATGAGGA+AGG - chr3.1:60882466-60882485 None:intergenic 55.0%
GTGACTGCCAAGCACACATG+GGG + chr3.1:60882384-60882403 MS.gene52366:CDS 55.0%
GTGGCATGATAGACCAAGCC+AGG + chr3.1:60882502-60882521 MS.gene52366:CDS 55.0%
TGCTGGGTGTGTCGGATATG+AGG - chr3.1:60882470-60882489 None:intergenic 55.0%
! GCTTTGGCGACTGGTGTTGA+TGG + chr3.1:60883147-60883166 MS.gene52366:CDS 55.0%
!! GCTTTGCTAGCTTTGGCGAC+TGG + chr3.1:60883138-60883157 MS.gene52366:CDS 55.0%
!! GGTGGTGCCATCTTTCTTGC+TGG + chr3.1:60881816-60881835 MS.gene52366:CDS 55.0%
!!! CCGCAGGTTTTGGTTGGTCT+TGG + chr3.1:60883229-60883248 MS.gene52366:CDS 55.0%
ATCCGACACACCCAGCAGCT+TGG + chr3.1:60882473-60882492 MS.gene52366:CDS 60.0%
CCCAGCAGCTTGGTTGAACG+TGG + chr3.1:60882483-60882502 MS.gene52366:CDS 60.0%
GATGGCACCACCCAACACGA+TGG - chr3.1:60881808-60881827 None:intergenic 60.0%
GCCACGTTCAACCAAGCTGC+TGG - chr3.1:60882487-60882506 None:intergenic 60.0%
! TGGCGAGGTGCTTTCAGCAC+AGG + chr3.1:60882309-60882328 MS.gene52366:CDS 60.0%
CTGCCAAGCACACATGGGGC+TGG + chr3.1:60882388-60882407 MS.gene52366:CDS 65.0%
TCGCCAGCCCCATGTGTGCT+TGG - chr3.1:60882394-60882413 None:intergenic 65.0%
! TGGGGCTGGCGACTCTCTCT+TGG + chr3.1:60882402-60882421 MS.gene52366:CDS 65.0%
GGTCTTGGGGCCCACTCACC+TGG + chr3.1:60883244-60883263 MS.gene52366:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 60880974 60883566 60880974 ID=MS.gene52366
chr3.1 mRNA 60880974 60883566 60880974 ID=MS.gene52366.t1;Parent=MS.gene52366
chr3.1 exon 60880974 60881106 60880974 ID=MS.gene52366.t1.exon1;Parent=MS.gene52366.t1
chr3.1 CDS 60880974 60881106 60880974 ID=cds.MS.gene52366.t1;Parent=MS.gene52366.t1
chr3.1 exon 60881607 60881926 60881607 ID=MS.gene52366.t1.exon2;Parent=MS.gene52366.t1
chr3.1 CDS 60881607 60881926 60881607 ID=cds.MS.gene52366.t1;Parent=MS.gene52366.t1
chr3.1 exon 60882270 60882899 60882270 ID=MS.gene52366.t1.exon3;Parent=MS.gene52366.t1
chr3.1 CDS 60882270 60882899 60882270 ID=cds.MS.gene52366.t1;Parent=MS.gene52366.t1
chr3.1 exon 60883126 60883566 60883126 ID=MS.gene52366.t1.exon4;Parent=MS.gene52366.t1
chr3.1 CDS 60883126 60883566 60883126 ID=cds.MS.gene52366.t1;Parent=MS.gene52366.t1
Gene Sequence

>MS.gene52366

ATGGCAGGTGGAGGGTTTGCCATTGATGCACCTTCCAATGGCTTTGATGGAAAGATAACACTCTCAGTTATCATTACTTGTATCGTTGCTGCATCTAGTGGACTCATTCTTGGATATGACATTGGGATTTCAGGTTTTCTTCCTTTTTGTTTTTTCATTATAAAGTATCCAATTAGAGCATGTTTTTTGCTTTCTAAAGTATCTTGTATTATTCTGCTACATCAATCTTTGCTCAAAAATGAAAGAAAATGTTTTAAACAATGTTTCAGAAACCGACTCGCCAAAGTCACTAACCAGTAGATCACTATTTGAATCACATGGTTAAATTGAATGATTTGATCATATAACTCGAGAATTAAACTGGACTCAGCACGATGTTTGTTTATGTAGAAAATTCTAAAATTTTTTTTATATCTATAAAATGTCAAAATCATTAGAGAAATTAACATTATTGCACAAGCTCAATCTTCAAATTTAAAACTTTTAGTAGTACAAATCTAAATAGGTTTGGACAAAGTCTAATTGCATGATGCTATATATATTTTTTGCATTTTATCTTCAAAATGTACTTGGAGAAGAACCAAAGTCATAAAGCTCACCCTTTTTACTAATGAAAAATGTTATCAAATTCAGGAGGTGTTACAACAATGGTGCCATTTCTCAATAAATTCTTCCCGGATATTCTAAGAAAGGCAGCTGGTACTGAAGTAAACATGTACTGTGTGTATGACAGTCAAATGTTGACATTGTTTACGTCTTCTCTGTATTTAGCTGCGTTAGTGTCAACTCTTGTAGCTAGCAAAGTCACTGCAGCAATCGGTCGAAGAAATACCATCGTGTTGGGTGGTGCCATCTTTCTTGCTGGTGCTGCTATTAATGGCGGTTCTGAAAATATTGCTATGCTCATTCTTGGTCGTATTCTTCTTGGTTTTGGGATCGGTTTCTCTAGTCAAGTAAGTGAGCATATACAATTATACACATTTGTTAATAGTAGTCCAACATCGTCAACAAAATAAAATTTTCTATTATACATAAGCATTGAGACCATTTCCCCTTTTTTTAGTTTAACTTTTAGCCGCAATTTTAAATAGCAATGTTGCCACGATTCTTGTTCTTAAAGATAATTGTGATCAATCATTGTTGTATCGTGGTCGCTGGGGCATAAATATCATAACCTTGTGGTCCAAATTTTGATAGCATCCTTTATTTAAAATCTTTCTACTAACTTTTAACTTAAGAAACCATGTTTAAAATGAATTTGCTTGCTAATTGTATTACATGATGCAATTGGAAAAGGCGGCTCCACTATACCTTTCTGAAATCGCTCCACCAAAATGGCGAGGTGCTTTCAGCACAGGCTTCCAATTCTTCATAGGAGTTGGCGTGGTTGCTGCATGTTGCATAAATTACGTGACTGCCAAGCACACATGGGGCTGGCGACTCTCTCTTGGACTAGCAGTGGTGCCTGCAGCCGTGATGACAATTGGTGCCTTCCTCATATCCGACACACCCAGCAGCTTGGTTGAACGTGGCATGATAGACCAAGCCAGGAAAGCATTGCAAAAAATCAGAGGATCATCCATCGATGTTGAGCCCGAGTTAGAAGAACTCATTAAGTGGACAGAAATTTCGAAAGCAGTGCAACAAGAGCCATTTATGACCATCTTTGAGAGACAATATCGACCTCACTTAATCATGGCATTTGCAATCCCGTTTTTTCAACAGTTTACAGGGATCAACATCGTCGCTTTCTATTCACCAAACCTCTTTCAATCTGTGGGTTTAGGAAACAATGGTGCTTTACTTTCTGCCGTTATTCTTGGACTCGTCAACCTTGCTTCCATCCTAGTCTCAACTGCTTTTGTCGATCGGTTTGGTCGAAGATTCTTGTTCATTACGGGTGGCATTCTATTGCTTGTCTGTCTGGTAAGCAAATTAAGCAACCATATGTGTATAATAATATTTATATTTATTTATTATTCTAGGTTTTTCATACTCTCAACTACTAAATAAATGAATTAACTACAGAAAGATCGTGGTACTAATGCTTTTTCCGTATCTAAATTTTCGTCCTTATTTTAATTTCTCCATCTAGTCATTATACCTGTGGTATTGGTACTAATAATTATAATTTGTGTTGACGCTTTGAAAGATTGCGGTGTCTGCTTTGCTAGCTTTGGCGACTGGTGTTGATGGTACAAAGGACATGTCAAAGGGCAATGCAACATTAGTATTGGTTTTACTATGTTTCTATGCCGCAGGTTTTGGTTGGTCTTGGGGCCCACTCACCTGGCTAATTCCAAGTGAAATTTTCCCCTTAAAAATCAGAACAACCGGACAAAGTATAGCAGTTGGTGTACAATTCATAATCTTGTTTGTGTTATCACAAACATTCTTGACAATGCTATGCCACTTCAAGTTTGGTGCTTTCTTGTTCTATGCATTTTGGGTTGCAGTGATGACACTATTTATTATTTTCTTTTTACCTGAGACCAAAGGAATTGCTTTGGAGTCAATGTACATTATATGGGGCAAACATTGGTTTTGGCGGCGGTTTGTTAAAGGAGAAGTTGATAAAAACAATCTTCCATGA

Protein sequence

>MS.gene52366.t1

MAGGGFAIDAPSNGFDGKITLSVIITCIVAASSGLILGYDIGISGGVTTMVPFLNKFFPDILRKAAGTEVNMYCVYDSQMLTLFTSSLYLAALVSTLVASKVTAAIGRRNTIVLGGAIFLAGAAINGGSENIAMLILGRILLGFGIGFSSQAAPLYLSEIAPPKWRGAFSTGFQFFIGVGVVAACCINYVTAKHTWGWRLSLGLAVVPAAVMTIGAFLISDTPSSLVERGMIDQARKALQKIRGSSIDVEPELEELIKWTEISKAVQQEPFMTIFERQYRPHLIMAFAIPFFQQFTGINIVAFYSPNLFQSVGLGNNGALLSAVILGLVNLASILVSTAFVDRFGRRFLFITGGILLLVCLIAVSALLALATGVDGTKDMSKGNATLVLVLLCFYAAGFGWSWGPLTWLIPSEIFPLKIRTTGQSIAVGVQFIILFVLSQTFLTMLCHFKFGAFLFYAFWVAVMTLFIIFFLPETKGIALESMYIIWGKHWFWRRFVKGEVDKNNLP