Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55657.t1 | RHN68036.1 | 85 | 247 | 34 | 1 | 1 | 244 | 17 | 263 | 1.40E-116 | 429.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55657.t1 | G7J785 | 85.0 | 247 | 34 | 1 | 1 | 244 | 1 | 247 | 9.9e-117 | 429.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049609 | MS.gene55657 | 0.811761 | 5.96E-51 | -1.69E-46 |
| MS.gene049656 | MS.gene55657 | 0.917737 | 3.69E-86 | -1.69E-46 |
| MS.gene049657 | MS.gene55657 | 0.898714 | 4.05E-77 | -1.69E-46 |
| MS.gene050170 | MS.gene55657 | 0.805253 | 1.46E-49 | -1.69E-46 |
| MS.gene050502 | MS.gene55657 | 0.806137 | 9.52E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene55657 | 0.836045 | 1.18E-56 | -1.69E-46 |
| MS.gene050772 | MS.gene55657 | 0.808982 | 2.37E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene55657 | 0.832573 | 8.75E-56 | -1.69E-46 |
| MS.gene051838 | MS.gene55657 | 0.80299 | 4.32E-49 | -1.69E-46 |
| MS.gene052346 | MS.gene55657 | 0.838107 | 3.50E-57 | -1.69E-46 |
| MS.gene052501 | MS.gene55657 | 0.800281 | 1.55E-48 | -1.69E-46 |
| MS.gene052503 | MS.gene55657 | 0.811987 | 5.32E-51 | -1.69E-46 |
| MS.gene052505 | MS.gene55657 | 0.80818 | 3.52E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene55657 | 0.800931 | 1.14E-48 | -1.69E-46 |
| MS.gene052823 | MS.gene55657 | 0.813651 | 2.30E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene55657 | 0.81003 | 1.41E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene55657 | 0.806509 | 7.95E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene55657 | 0.801492 | 8.78E-49 | -1.69E-46 |
| MS.gene053318 | MS.gene55657 | 0.832635 | 8.45E-56 | -1.69E-46 |
| MS.gene053436 | MS.gene55657 | 0.846567 | 2.00E-59 | -1.69E-46 |
| MS.gene053574 | MS.gene55657 | 0.831398 | 1.71E-55 | -1.69E-46 |
| MS.gene053626 | MS.gene55657 | 0.821 | 5.10E-53 | -1.69E-46 |
| MS.gene054408 | MS.gene55657 | 0.801227 | 9.94E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene55657 | 0.82409 | 9.74E-54 | -1.69E-46 |
| MS.gene055909 | MS.gene55657 | 0.81931 | 1.24E-52 | -1.69E-46 |
| MS.gene055911 | MS.gene55657 | 0.820755 | 5.80E-53 | -1.69E-46 |
| MS.gene05601 | MS.gene55657 | 0.812848 | 3.45E-51 | -1.69E-46 |
| MS.gene056040 | MS.gene55657 | 0.83837 | 2.99E-57 | -1.69E-46 |
| MS.gene056166 | MS.gene55657 | 0.861629 | 8.97E-64 | -1.69E-46 |
| MS.gene056346 | MS.gene55657 | 0.80793 | 3.97E-50 | -1.69E-46 |
| MS.gene056878 | MS.gene55657 | 0.816072 | 6.68E-52 | -1.69E-46 |
| MS.gene057734 | MS.gene55657 | 0.80264 | 5.10E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene55657 | 0.801363 | 9.33E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene55657 | 0.833499 | 5.15E-56 | -1.69E-46 |
| MS.gene058700 | MS.gene55657 | 0.802682 | 5.00E-49 | -1.69E-46 |
| MS.gene05883 | MS.gene55657 | 0.806055 | 9.90E-50 | -1.69E-46 |
| MS.gene059303 | MS.gene55657 | 0.832036 | 1.19E-55 | -1.69E-46 |
| MS.gene05995 | MS.gene55657 | 0.806501 | 7.98E-50 | -1.69E-46 |
| MS.gene05996 | MS.gene55657 | 0.831455 | 1.65E-55 | -1.69E-46 |
| MS.gene060187 | MS.gene55657 | -0.802365 | 5.81E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene55657 | 0.807711 | 4.42E-50 | -1.69E-46 |
| MS.gene060485 | MS.gene55657 | 0.822598 | 2.17E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55657.t1 | MTR_3g064020 | 85.020 | 247 | 34 | 1 | 1 | 244 | 1 | 247 | 1.17e-155 | 432 |
| MS.gene55657.t1 | MTR_5g076250 | 62.857 | 245 | 78 | 5 | 1 | 239 | 1 | 238 | 1.38e-95 | 280 |
| MS.gene55657.t1 | MTR_3g063990 | 54.980 | 251 | 71 | 4 | 9 | 221 | 3 | 249 | 8.71e-84 | 251 |
| MS.gene55657.t1 | MTR_1g057650 | 51.653 | 242 | 103 | 6 | 1 | 236 | 1 | 234 | 9.58e-74 | 225 |
| MS.gene55657.t1 | MTR_7g117750 | 43.983 | 241 | 121 | 5 | 1 | 236 | 1 | 232 | 1.63e-60 | 191 |
| MS.gene55657.t1 | MTR_3g063980 | 57.534 | 73 | 27 | 1 | 167 | 239 | 56 | 124 | 7.45e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55657.t1 | AT3G02700 | 57.917 | 240 | 89 | 6 | 1 | 236 | 1 | 232 | 2.39e-81 | 244 |
| MS.gene55657.t1 | AT5G06370 | 50.826 | 242 | 105 | 6 | 1 | 236 | 1 | 234 | 8.39e-74 | 225 |
| MS.gene55657.t1 | AT5G16360 | 47.101 | 276 | 96 | 8 | 1 | 236 | 1 | 266 | 4.39e-70 | 216 |
| MS.gene55657.t1 | AT4G00905 | 45.714 | 245 | 120 | 5 | 1 | 236 | 1 | 241 | 4.99e-63 | 198 |
| MS.gene55657.t1 | AT5G16330 | 47.325 | 243 | 98 | 8 | 1 | 236 | 9 | 228 | 6.93e-62 | 194 |
| MS.gene55657.t1 | AT1G01225 | 47.391 | 230 | 112 | 3 | 1 | 226 | 1 | 225 | 1.58e-61 | 194 |
Find 56 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTAGATTGCTTTCTTTC+AGG | 0.124117 | 3.3:-57652507 | MS.gene55657:CDS |
| GCTTTATATCTTCTTGAAAA+TGG | 0.152944 | 3.3:-57652369 | MS.gene55657:CDS |
| AAAAGATTGGTTTCTGATAT+TGG | 0.189791 | 3.3:-57652141 | MS.gene55657:CDS |
| ATGTTTCCGATCAGTCTTAT+TGG | 0.247318 | 3.3:+57652917 | None:intergenic |
| CACAGTTATTCTTGAAGATA+TGG | 0.269187 | 3.3:+57652334 | None:intergenic |
| TATCTTCTTGAAAATGGATT+TGG | 0.299009 | 3.3:-57652363 | MS.gene55657:CDS |
| TTTGCAGTTTATTGCAAAAC+AGG | 0.337490 | 3.3:-57652306 | MS.gene55657:CDS |
| TGCATGTGCCTCCTCTAGCT+TGG | 0.338272 | 3.3:+57652433 | None:intergenic |
| CCGCACCGTCACGACATCTT+TGG | 0.342473 | 3.3:+57652559 | None:intergenic |
| GAACTCTACCTCTTTCAATA+TGG | 0.373949 | 3.3:-57652480 | MS.gene55657:CDS |
| AACTTACTGCATTAAAAGAT+TGG | 0.377765 | 3.3:-57652154 | MS.gene55657:CDS |
| ATGGTGATCCATTTCACAAT+TGG | 0.385236 | 3.3:-57652660 | MS.gene55657:CDS |
| CTGGGGATCATATTTACTCT+TGG | 0.413378 | 3.3:-57652887 | MS.gene55657:CDS |
| GCATGTGCCTCCTCTAGCTT+GGG | 0.419205 | 3.3:+57652434 | None:intergenic |
| CACATGCACCCTAGCTGCTT+CGG | 0.423293 | 3.3:-57652418 | MS.gene55657:CDS |
| ATCCATTTCACAATTGGATC+AGG | 0.464773 | 3.3:-57652654 | MS.gene55657:CDS |
| ATCGGAAACATCTAAAACCT+GGG | 0.479101 | 3.3:-57652905 | MS.gene55657:CDS |
| GGGATCATATTTACTCTTGG+AGG | 0.483005 | 3.3:-57652884 | MS.gene55657:CDS |
| ACAGGAATATATGTTGAAGA+TGG | 0.483154 | 3.3:-57652684 | MS.gene55657:intron |
| GTCCTGATCCAATTGTGAAA+TGG | 0.487607 | 3.3:+57652652 | None:intergenic |
| GGATCAGGACAGCAAGCTGC+TGG | 0.487944 | 3.3:-57652639 | MS.gene55657:CDS |
| CGAAAGAACTTGTAAAGAAA+CGG | 0.498819 | 3.3:+57652598 | None:intergenic |
| ATACCTGAGTTGACCATGGA+TGG | 0.501421 | 3.3:-57652069 | MS.gene55657:CDS |
| TCATATTTACTCTTGGAGGC+AGG | 0.503930 | 3.3:-57652880 | MS.gene55657:CDS |
| GCTGGCAGCAGCTGAATAAG+AGG | 0.511661 | 3.3:+57652245 | None:intergenic |
| TGAAAGAAAGCAATCTAAGC+AGG | 0.512899 | 3.3:+57652509 | None:intergenic |
| ACATCTTTGGCATGGAATGT+TGG | 0.518788 | 3.3:+57652572 | None:intergenic |
| TTCAAGAAGATATAAAGCAC+GGG | 0.519285 | 3.3:+57652374 | None:intergenic |
| TGGAGACACCATATTGAAAG+AGG | 0.529495 | 3.3:+57652472 | None:intergenic |
| CAGTTGGATCCGAAGCAGCT+AGG | 0.530992 | 3.3:+57652409 | None:intergenic |
| AGTTGGATCCGAAGCAGCTA+GGG | 0.533238 | 3.3:+57652410 | None:intergenic |
| GTCGTGACGGTGCGGAAACA+AGG | 0.535193 | 3.3:-57652551 | MS.gene55657:CDS |
| AGTCTACTAGCTTCCATCCA+TGG | 0.540139 | 3.3:+57652056 | None:intergenic |
| GATCGGAAACATCTAAAACC+TGG | 0.543021 | 3.3:-57652906 | MS.gene55657:CDS |
| AAGAAACGGTATAAAATCGC+TGG | 0.543391 | 3.3:+57652612 | None:intergenic |
| TTTCAAGAAGATATAAAGCA+CGG | 0.545122 | 3.3:+57652373 | None:intergenic |
| CGGGGAAGGACCTCTTCAGT+TGG | 0.547650 | 3.3:+57652393 | None:intergenic |
| GGTAGGGCTTTGGTTTGCTG+TGG | 0.552956 | 3.3:-57652177 | MS.gene55657:CDS |
| TCAACCTCAAAAGGCTGCAG+TGG | 0.553525 | 3.3:-57652276 | MS.gene55657:CDS |
| TTAGATTGCTTTCTTTCAGG+AGG | 0.554330 | 3.3:-57652504 | MS.gene55657:CDS |
| TGCTTTCCAATAAGACTGAT+CGG | 0.558642 | 3.3:-57652923 | MS.gene55657:CDS |
| CTTCCATCCATGGTCAACTC+AGG | 0.559095 | 3.3:+57652066 | None:intergenic |
| TGATGAAGAGTCTACAGTGC+TGG | 0.563974 | 3.3:+57652227 | None:intergenic |
| CAAGAGTAAATATGATCCCC+AGG | 0.568302 | 3.3:+57652888 | None:intergenic |
| CTGTAGACTCTTCATCACTT+CGG | 0.584097 | 3.3:-57652221 | MS.gene55657:CDS |
| CCGTCACGACATCTTTGGCA+TGG | 0.598030 | 3.3:+57652564 | None:intergenic |
| GAAGATATAAAGCACGGGGA+AGG | 0.600493 | 3.3:+57652379 | None:intergenic |
| AATATATGTTGAAGATGGAA+TGG | 0.601381 | 3.3:-57652679 | MS.gene55657:CDS |
| GCTTACCTCTATGCACATCA+TGG | 0.604488 | 3.3:-57652858 | MS.gene55657:intron |
| GGTGCGGAAACAAGGACTCA+TGG | 0.614117 | 3.3:-57652543 | MS.gene55657:CDS |
| GATGACCATGATGTGCATAG+AGG | 0.641641 | 3.3:+57652853 | None:intergenic |
| TGCTTCGGATCCAACTGAAG+AGG | 0.647462 | 3.3:-57652403 | MS.gene55657:CDS |
| CCAAAGATGTCGTGACGGTG+CGG | 0.654870 | 3.3:-57652559 | MS.gene55657:CDS |
| CCATGCCAAAGATGTCGTGA+CGG | 0.658966 | 3.3:-57652564 | MS.gene55657:CDS |
| TCAAGAAGATATAAAGCACG+GGG | 0.677622 | 3.3:+57652375 | None:intergenic |
| TCGGAAACATCTAAAACCTG+GGG | 0.712111 | 3.3:-57652904 | MS.gene55657:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTTGATACATAAGAAAA+TGG | + | chr3.3:57652217-57652236 | None:intergenic | 20.0% |
| ! | AACTTACTGCATTAAAAGAT+TGG | - | chr3.3:57652838-57652857 | MS.gene55657:intron | 25.0% |
| ! | AATATATGTTGAAGATGGAA+TGG | - | chr3.3:57652313-57652332 | MS.gene55657:CDS | 25.0% |
| ! | GCTTTATATCTTCTTGAAAA+TGG | - | chr3.3:57652623-57652642 | MS.gene55657:CDS | 25.0% |
| ! | TTTCAAGAAGATATAAAGCA+CGG | + | chr3.3:57652622-57652641 | None:intergenic | 25.0% |
| !! | TATCTTCTTGAAAATGGATT+TGG | - | chr3.3:57652629-57652648 | MS.gene55657:CDS | 25.0% |
| !! | TTGTGCAAGAAAGTATAAAT+TGG | + | chr3.3:57652187-57652206 | None:intergenic | 25.0% |
| !!! | AAAAGATTGGTTTCTGATAT+TGG | - | chr3.3:57652851-57652870 | MS.gene55657:intron | 25.0% |
| ACAGGAATATATGTTGAAGA+TGG | - | chr3.3:57652308-57652327 | MS.gene55657:CDS | 30.0% | |
| CACAGTTATTCTTGAAGATA+TGG | + | chr3.3:57652661-57652680 | None:intergenic | 30.0% | |
| CGAAAGAACTTGTAAAGAAA+CGG | + | chr3.3:57652397-57652416 | None:intergenic | 30.0% | |
| TCAGTATGATAGTTATGCAT+AGG | + | chr3.3:57652242-57652261 | None:intergenic | 30.0% | |
| TTCAAGAAGATATAAAGCAC+GGG | + | chr3.3:57652621-57652640 | None:intergenic | 30.0% | |
| TTGGGCTAAAAAATGTAGTT+TGG | + | chr3.3:57652543-57652562 | None:intergenic | 30.0% | |
| TTTGCAGTTTATTGCAAAAC+AGG | - | chr3.3:57652686-57652705 | MS.gene55657:intron | 30.0% | |
| !!! | AACTCAGGTATTTTTTCAAC+TGG | + | chr3.3:57652914-57652933 | None:intergenic | 30.0% |
| AAGAAACGGTATAAAATCGC+TGG | + | chr3.3:57652383-57652402 | None:intergenic | 35.0% | |
| ATCCATTTCACAATTGGATC+AGG | - | chr3.3:57652338-57652357 | MS.gene55657:CDS | 35.0% | |
| ATGGTGATCCATTTCACAAT+TGG | - | chr3.3:57652332-57652351 | MS.gene55657:CDS | 35.0% | |
| CGGCATTTCTGTAATATAAC+AGG | - | chr3.3:57652290-57652309 | MS.gene55657:CDS | 35.0% | |
| GAACTCTACCTCTTTCAATA+TGG | - | chr3.3:57652512-57652531 | MS.gene55657:CDS | 35.0% | |
| TCAAGAAGATATAAAGCACG+GGG | + | chr3.3:57652620-57652639 | None:intergenic | 35.0% | |
| TCATATTTGTGTCCTGCTAA+CGG | - | chr3.3:57652270-57652289 | MS.gene55657:CDS | 35.0% | |
| TGAAAGAAAGCAATCTAAGC+AGG | + | chr3.3:57652486-57652505 | None:intergenic | 35.0% | |
| TGCTTAGATTGCTTTCTTTC+AGG | - | chr3.3:57652485-57652504 | MS.gene55657:CDS | 35.0% | |
| TGCTTTCCAATAAGACTGAT+CGG | - | chr3.3:57652069-57652088 | MS.gene55657:CDS | 35.0% | |
| TTAGATTGCTTTCTTTCAGG+AGG | - | chr3.3:57652488-57652507 | MS.gene55657:CDS | 35.0% | |
| ! | AAAAATACCTGAGTTGACCA+TGG | - | chr3.3:57652919-57652938 | MS.gene55657:CDS | 35.0% |
| ! | ATCGGAAACATCTAAAACCT+GGG | - | chr3.3:57652087-57652106 | MS.gene55657:CDS | 35.0% |
| ! | ATGTTTCCGATCAGTCTTAT+TGG | + | chr3.3:57652078-57652097 | None:intergenic | 35.0% |
| ! | TTTGTGAACTCCAGTCTTTT+TGG | - | chr3.3:57652794-57652813 | MS.gene55657:intron | 35.0% |
| !!! | GGTCTTTTTTCAACCTCAAA+AGG | - | chr3.3:57652707-57652726 | MS.gene55657:intron | 35.0% |
| ACATCTTTGGCATGGAATGT+TGG | + | chr3.3:57652423-57652442 | None:intergenic | 40.0% | |
| ATTACAGAAATGCCGTTAGC+AGG | + | chr3.3:57652285-57652304 | None:intergenic | 40.0% | |
| CAAGAGTAAATATGATCCCC+AGG | + | chr3.3:57652107-57652126 | None:intergenic | 40.0% | |
| CTGGGGATCATATTTACTCT+TGG | - | chr3.3:57652105-57652124 | MS.gene55657:CDS | 40.0% | |
| CTGTAGACTCTTCATCACTT+CGG | - | chr3.3:57652771-57652790 | MS.gene55657:intron | 40.0% | |
| GGGATCATATTTACTCTTGG+AGG | - | chr3.3:57652108-57652127 | MS.gene55657:CDS | 40.0% | |
| GTCCTGATCCAATTGTGAAA+TGG | + | chr3.3:57652343-57652362 | None:intergenic | 40.0% | |
| TCATATTTACTCTTGGAGGC+AGG | - | chr3.3:57652112-57652131 | MS.gene55657:CDS | 40.0% | |
| TGGAGACACCATATTGAAAG+AGG | + | chr3.3:57652523-57652542 | None:intergenic | 40.0% | |
| ! | GATCGGAAACATCTAAAACC+TGG | - | chr3.3:57652086-57652105 | MS.gene55657:CDS | 40.0% |
| ! | TCGGAAACATCTAAAACCTG+GGG | - | chr3.3:57652088-57652107 | MS.gene55657:CDS | 40.0% |
| !! | GAACTCCAGTCTTTTTGGTA+GGG | - | chr3.3:57652799-57652818 | MS.gene55657:intron | 40.0% |
| !! | TGAACTCCAGTCTTTTTGGT+AGG | - | chr3.3:57652798-57652817 | MS.gene55657:intron | 40.0% |
| !!! | CATTTTTTAGCCCAAGCTAG+AGG | - | chr3.3:57652548-57652567 | MS.gene55657:CDS | 40.0% |
| CAAAGCCCTACCAAAAAGAC+TGG | + | chr3.3:57652807-57652826 | None:intergenic | 45.0% | |
| GAAGATATAAAGCACGGGGA+AGG | + | chr3.3:57652616-57652635 | None:intergenic | 45.0% | |
| GATGACCATGATGTGCATAG+AGG | + | chr3.3:57652142-57652161 | None:intergenic | 45.0% | |
| GCTTACCTCTATGCACATCA+TGG | - | chr3.3:57652134-57652153 | MS.gene55657:CDS | 45.0% | |
| TGATGAAGAGTCTACAGTGC+TGG | + | chr3.3:57652768-57652787 | None:intergenic | 45.0% | |
| ! | ATACCTGAGTTGACCATGGA+TGG | - | chr3.3:57652923-57652942 | MS.gene55657:CDS | 45.0% |
| !! | CAGTCTTTTTGGTAGGGCTT+TGG | - | chr3.3:57652805-57652824 | MS.gene55657:intron | 45.0% |
| !! | TTTTTAGCCCAAGCTAGAGG+AGG | - | chr3.3:57652551-57652570 | MS.gene55657:CDS | 45.0% |
| AGTTGGATCCGAAGCAGCTA+GGG | + | chr3.3:57652585-57652604 | None:intergenic | 50.0% | |
| CCATGCCAAAGATGTCGTGA+CGG | - | chr3.3:57652428-57652447 | MS.gene55657:CDS | 50.0% | |
| CTTCCATCCATGGTCAACTC+AGG | + | chr3.3:57652929-57652948 | None:intergenic | 50.0% | |
| TCAACCTCAAAAGGCTGCAG+TGG | - | chr3.3:57652716-57652735 | MS.gene55657:intron | 50.0% | |
| TGCTTCGGATCCAACTGAAG+AGG | - | chr3.3:57652589-57652608 | MS.gene55657:CDS | 50.0% | |
| ! | TTGACCACTGCAGCCTTTTG+AGG | + | chr3.3:57652723-57652742 | None:intergenic | 50.0% |
| CACATGCACCCTAGCTGCTT+CGG | - | chr3.3:57652574-57652593 | MS.gene55657:CDS | 55.0% | |
| CAGTTGGATCCGAAGCAGCT+AGG | + | chr3.3:57652586-57652605 | None:intergenic | 55.0% | |
| CCAAAGATGTCGTGACGGTG+CGG | - | chr3.3:57652433-57652452 | MS.gene55657:CDS | 55.0% | |
| CCGTCACGACATCTTTGGCA+TGG | + | chr3.3:57652431-57652450 | None:intergenic | 55.0% | |
| GCTGGCAGCAGCTGAATAAG+AGG | + | chr3.3:57652750-57652769 | None:intergenic | 55.0% | |
| GGTGCGGAAACAAGGACTCA+TGG | - | chr3.3:57652449-57652468 | MS.gene55657:CDS | 55.0% | |
| TGCATGTGCCTCCTCTAGCT+TGG | + | chr3.3:57652562-57652581 | None:intergenic | 55.0% | |
| ! | GCATGTGCCTCCTCTAGCTT+GGG | + | chr3.3:57652561-57652580 | None:intergenic | 55.0% |
| !! | GGTAGGGCTTTGGTTTGCTG+TGG | - | chr3.3:57652815-57652834 | MS.gene55657:intron | 55.0% |
| CCGCACCGTCACGACATCTT+TGG | + | chr3.3:57652436-57652455 | None:intergenic | 60.0% | |
| CGGGGAAGGACCTCTTCAGT+TGG | + | chr3.3:57652602-57652621 | None:intergenic | 60.0% | |
| GGATCAGGACAGCAAGCTGC+TGG | - | chr3.3:57652353-57652372 | MS.gene55657:CDS | 60.0% | |
| GTCGTGACGGTGCGGAAACA+AGG | - | chr3.3:57652441-57652460 | MS.gene55657:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 57652062 | 57652952 | 57652062 | ID=MS.gene55657 |
| chr3.3 | mRNA | 57652062 | 57652952 | 57652062 | ID=MS.gene55657.t1;Parent=MS.gene55657 |
| chr3.3 | exon | 57652859 | 57652952 | 57652859 | ID=MS.gene55657.t1.exon1;Parent=MS.gene55657.t1 |
| chr3.3 | CDS | 57652859 | 57652952 | 57652859 | ID=cds.MS.gene55657.t1;Parent=MS.gene55657.t1 |
| chr3.3 | exon | 57652062 | 57652702 | 57652062 | ID=MS.gene55657.t1.exon2;Parent=MS.gene55657.t1 |
| chr3.3 | CDS | 57652062 | 57652702 | 57652062 | ID=cds.MS.gene55657.t1;Parent=MS.gene55657.t1 |
| Gene Sequence |
| Protein sequence |
