Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56250.t1 | XP_003598253.1 | 95.2 | 231 | 11 | 0 | 1 | 231 | 1 | 231 | 2.20E-106 | 395.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56250.t1 | Q12700 | 48.3 | 58 | 26 | 1 | 176 | 229 | 78 | 135 | 7.2e-10 | 65.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56250.t1 | G7IYK7 | 95.2 | 231 | 11 | 0 | 1 | 231 | 1 | 231 | 1.6e-106 | 395.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049634 | MS.gene56250 | 0.800643 | 1.31E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene56250 | 0.801848 | 7.42E-49 | -1.69E-46 |
| MS.gene050323 | MS.gene56250 | -0.802475 | 5.51E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene56250 | 0.811712 | 6.11E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene56250 | -0.824005 | 1.02E-53 | -1.69E-46 |
| MS.gene050868 | MS.gene56250 | -0.837041 | 6.57E-57 | -1.69E-46 |
| MS.gene050871 | MS.gene56250 | -0.836253 | 1.04E-56 | -1.69E-46 |
| MS.gene051044 | MS.gene56250 | 0.807385 | 5.19E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene56250 | 0.825674 | 4.12E-54 | -1.69E-46 |
| MS.gene051127 | MS.gene56250 | 0.80116 | 1.03E-48 | -1.69E-46 |
| MS.gene051138 | MS.gene56250 | 0.822788 | 1.96E-53 | -1.69E-46 |
| MS.gene052164 | MS.gene56250 | -0.800414 | 1.46E-48 | -1.69E-46 |
| MS.gene053203 | MS.gene56250 | -0.801002 | 1.11E-48 | -1.69E-46 |
| MS.gene053420 | MS.gene56250 | 0.820462 | 6.77E-53 | -1.69E-46 |
| MS.gene053488 | MS.gene56250 | 0.822438 | 2.37E-53 | -1.69E-46 |
| MS.gene053887 | MS.gene56250 | 0.820698 | 5.98E-53 | -1.69E-46 |
| MS.gene054054 | MS.gene56250 | 0.802257 | 6.11E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene56250 | 0.808225 | 3.44E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene56250 | -0.832118 | 1.13E-55 | -1.69E-46 |
| MS.gene056224 | MS.gene56250 | 0.814696 | 1.35E-51 | -1.69E-46 |
| MS.gene056387 | MS.gene56250 | -0.802977 | 4.34E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene56250 | -0.819323 | 1.23E-52 | -1.69E-46 |
| MS.gene058099 | MS.gene56250 | 0.81921 | 1.31E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene56250 | 0.830664 | 2.59E-55 | -1.69E-46 |
| MS.gene058173 | MS.gene56250 | 0.817059 | 4.01E-52 | -1.69E-46 |
| MS.gene058175 | MS.gene56250 | 0.830732 | 2.49E-55 | -1.69E-46 |
| MS.gene058334 | MS.gene56250 | 0.827993 | 1.15E-54 | -1.69E-46 |
| MS.gene058603 | MS.gene56250 | 0.806277 | 8.89E-50 | -1.69E-46 |
| MS.gene059037 | MS.gene56250 | 0.805047 | 1.61E-49 | -1.69E-46 |
| MS.gene059045 | MS.gene56250 | 0.842891 | 1.96E-58 | -1.69E-46 |
| MS.gene059703 | MS.gene56250 | 0.815521 | 8.86E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene56250 | -0.815564 | 8.66E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene56250 | -0.810693 | 1.02E-50 | -1.69E-46 |
| MS.gene060593 | MS.gene56250 | 0.800071 | 1.71E-48 | -1.69E-46 |
| MS.gene060778 | MS.gene56250 | -0.810528 | 1.10E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene56250 | -0.800955 | 1.13E-48 | -1.69E-46 |
| MS.gene061044 | MS.gene56250 | 0.803652 | 3.15E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56250.t1 | MTR_3g009020 | 94.372 | 231 | 13 | 0 | 1 | 231 | 1 | 231 | 8.59e-162 | 457 |
| MS.gene56250.t1 | MTR_3g009010 | 85.463 | 227 | 31 | 2 | 5 | 231 | 96 | 320 | 3.94e-138 | 399 |
| MS.gene56250.t1 | MTR_3g009030 | 80.435 | 230 | 43 | 2 | 3 | 231 | 27 | 255 | 8.46e-132 | 381 |
| MS.gene56250.t1 | MTR_3g008960 | 81.858 | 226 | 37 | 2 | 6 | 231 | 26 | 247 | 6.00e-131 | 379 |
| MS.gene56250.t1 | MTR_8g091310 | 65.665 | 233 | 76 | 2 | 3 | 231 | 31 | 263 | 2.42e-110 | 327 |
| MS.gene56250.t1 | MTR_5g062190 | 60.944 | 233 | 84 | 3 | 3 | 232 | 32 | 260 | 1.97e-99 | 298 |
| MS.gene56250.t1 | MTR_5g062290 | 59.292 | 226 | 87 | 2 | 7 | 231 | 36 | 257 | 7.63e-97 | 292 |
| MS.gene56250.t1 | MTR_3g086750 | 53.017 | 232 | 102 | 5 | 2 | 231 | 31 | 257 | 6.11e-77 | 241 |
| MS.gene56250.t1 | MTR_5g061980 | 60.870 | 92 | 35 | 1 | 141 | 231 | 87 | 178 | 6.97e-36 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTATCAAGGCACAAAT+TGG | 0.213760 | 3.3:-4548773 | MS.gene56250:CDS |
| TTCAGATTTATGTCACAAAA+TGG | 0.249547 | 3.3:-4548509 | MS.gene56250:CDS |
| AAGAAACATTTCAAATTATA+AGG | 0.276598 | 3.3:-4549594 | MS.gene56250:CDS |
| GCCAACCGTGGTTCACCTTC+TGG | 0.286700 | 3.3:-4549969 | MS.gene56250:CDS |
| CCCCGACAAAAGGGTGGATA+TGG | 0.294527 | 3.3:+4548440 | None:intergenic |
| AAGACTTGAGGGGCTCTATC+TGG | 0.327001 | 3.3:+4548669 | None:intergenic |
| GTTGAACACCCTAAAATTGA+AGG | 0.385361 | 3.3:+4549690 | None:intergenic |
| GAATCTAGGAAACTGGCTTT+TGG | 0.389983 | 3.3:-4550248 | MS.gene56250:CDS |
| TCATTAATTTGCAGCTTTGG+AGG | 0.400954 | 3.3:-4549726 | MS.gene56250:intron |
| ATAGAGCCCCTCAAGTCTTA+AGG | 0.401028 | 3.3:-4548665 | MS.gene56250:CDS |
| CCATACAAAGCTGTGAATCT+AGG | 0.407481 | 3.3:-4550262 | MS.gene56250:CDS |
| AAGCTGTGAATCTAGGAAAC+TGG | 0.408682 | 3.3:-4550255 | MS.gene56250:CDS |
| CCGTGGTTCACCTTCTGGTT+GGG | 0.410067 | 3.3:-4549964 | MS.gene56250:CDS |
| ATGCTTTGATTCGAACTTTG+AGG | 0.417179 | 3.3:+4549557 | None:intergenic |
| CCTAGATTCACAGCTTTGTA+TGG | 0.417981 | 3.3:+4550262 | None:intergenic |
| ATGAAACCTTCTCTCTTTGA+AGG | 0.421131 | 3.3:-4550214 | MS.gene56250:CDS |
| AAATATCTTTGTGCTGAAGA+TGG | 0.433448 | 3.3:-4550011 | MS.gene56250:CDS |
| TACCAACTTACTAATGGTTA+TGG | 0.439502 | 3.3:-4548693 | MS.gene56250:CDS |
| TAGAGCCCCTCAAGTCTTAA+GGG | 0.451932 | 3.3:-4548664 | MS.gene56250:intron |
| AATATCTTTGTGCTGAAGAT+GGG | 0.456726 | 3.3:-4550010 | MS.gene56250:CDS |
| TTCTCACCCTTAAGACTTGA+GGG | 0.457721 | 3.3:+4548658 | None:intergenic |
| TGCTTTGATTCGAACTTTGA+GGG | 0.457798 | 3.3:+4549558 | None:intergenic |
| AAAGGGTGGATATGGATCAT+AGG | 0.465336 | 3.3:+4548448 | None:intergenic |
| ACCGTGGTTCACCTTCTGGT+TGG | 0.489604 | 3.3:-4549965 | MS.gene56250:CDS |
| TAGGCTATCCACCATCCAAC+AGG | 0.491070 | 3.3:+4548467 | None:intergenic |
| AATTGTCAACAAAGATCTCT+TGG | 0.493359 | 3.3:-4550191 | MS.gene56250:intron |
| TGAAATGTTTCTTTGTTGCT+AGG | 0.493913 | 3.3:+4549604 | None:intergenic |
| GTTCGAATCAAAGCATCAAA+TGG | 0.495106 | 3.3:-4549550 | MS.gene56250:CDS |
| CATTAATTTGCAGCTTTGGA+GGG | 0.502035 | 3.3:-4549725 | MS.gene56250:intron |
| TTTGTGGGGTTAAATACTAT+AGG | 0.509718 | 3.3:-4549661 | MS.gene56250:CDS |
| GGAGAGTACCAACTTACTAA+TGG | 0.515314 | 3.3:-4548699 | MS.gene56250:CDS |
| GACCATAACCATTAGTAAGT+TGG | 0.516537 | 3.3:+4548691 | None:intergenic |
| AAATTATCAAGGCACAAATT+GGG | 0.518686 | 3.3:-4548772 | MS.gene56250:CDS |
| AAAATGGATTAGATGCTGTC+AGG | 0.519664 | 3.3:-4548493 | MS.gene56250:CDS |
| ACAATTCCTTCAAAGAGAGA+AGG | 0.552174 | 3.3:+4550208 | None:intergenic |
| ATATCTTTGTGCTGAAGATG+GGG | 0.558601 | 3.3:-4550009 | MS.gene56250:CDS |
| ATTCTCACCCTTAAGACTTG+AGG | 0.559378 | 3.3:+4548657 | None:intergenic |
| CAGTTATGTATGAATTCCAA+TGG | 0.561323 | 3.3:+4548540 | None:intergenic |
| GGGTTAAATACTATAGGAGG+AGG | 0.574219 | 3.3:-4549655 | MS.gene56250:CDS |
| ACCAGAAGGTGAACCACGGT+TGG | 0.574519 | 3.3:+4549968 | None:intergenic |
| ACAATTGTAAACACATTACA+AGG | 0.575947 | 3.3:-4548720 | MS.gene56250:CDS |
| TTAGTGACAGCAAATTATCA+AGG | 0.576262 | 3.3:-4548783 | MS.gene56250:CDS |
| CTGTCAGGATACCTGTTGGA+TGG | 0.577394 | 3.3:-4548478 | MS.gene56250:CDS |
| AGATTCACAGCTTTGTATGG+CGG | 0.583970 | 3.3:+4550265 | None:intergenic |
| TTGGGATGACAATGATCCAT+CGG | 0.585148 | 3.3:-4548754 | MS.gene56250:CDS |
| GTGGGGTTAAATACTATAGG+AGG | 0.586439 | 3.3:-4549658 | MS.gene56250:CDS |
| TTGAATGTTTCCCAACCAGA+AGG | 0.591163 | 3.3:+4549954 | None:intergenic |
| GCTTTGATTCGAACTTTGAG+GGG | 0.596734 | 3.3:+4549559 | None:intergenic |
| TCAGGATACCTGTTGGATGG+TGG | 0.627765 | 3.3:-4548475 | MS.gene56250:CDS |
| GATGCTGTCAGGATACCTGT+TGG | 0.641176 | 3.3:-4548482 | MS.gene56250:CDS |
| TCTCACCCTTAAGACTTGAG+GGG | 0.663932 | 3.3:+4548659 | None:intergenic |
| CCCAACCAGAAGGTGAACCA+CGG | 0.677633 | 3.3:+4549964 | None:intergenic |
| TATCTTTGTGCTGAAGATGG+GGG | 0.680990 | 3.3:-4550008 | MS.gene56250:CDS |
| ACTGCTATTGTAGCCAACCG+TGG | 0.690449 | 3.3:-4549981 | MS.gene56250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTTTTTATTTTTTTTG+TGG | + | chr3.3:4548606-4548625 | None:intergenic | 10.0% |
| !! | AAATAATTAGAACTTACAAA+GGG | + | chr3.3:4548947-4548966 | None:intergenic | 15.0% |
| !! | AAGAAACATTTCAAATTATA+AGG | - | chr3.3:4549101-4549120 | MS.gene56250:intron | 15.0% |
| !! | AGATAATTTATATGATTTGA+TGG | + | chr3.3:4549482-4549501 | None:intergenic | 15.0% |
| !! | ATGTAATAAAGAAACAATTT+AGG | + | chr3.3:4549331-4549350 | None:intergenic | 15.0% |
| !! | CCTATTTATAAAAGAAATTT+AGG | + | chr3.3:4548887-4548906 | None:intergenic | 15.0% |
| !! | GTTATGTTAAATTAAAAATG+AGG | + | chr3.3:4549678-4549697 | None:intergenic | 15.0% |
| !!! | CCTAAATTTCTTTTATAAAT+AGG | - | chr3.3:4548884-4548903 | MS.gene56250:intron | 15.0% |
| !! | AAAAACATAATAACCGATAT+AGG | + | chr3.3:4549303-4549322 | None:intergenic | 20.0% |
| !! | AAAAAGTAAAAATACTCCAT+CGG | + | chr3.3:4548911-4548930 | None:intergenic | 20.0% |
| !! | AATGTATCTGGTTAAAAAAT+TGG | + | chr3.3:4548852-4548871 | None:intergenic | 20.0% |
| !! | AATTTGAACTTCTTAATACT+AGG | + | chr3.3:4548582-4548601 | None:intergenic | 20.0% |
| !! | ACCTAAATGTCTTTAATAAA+TGG | + | chr3.3:4548806-4548825 | None:intergenic | 20.0% |
| !! | CAAATAATTAGAACTTACAA+AGG | + | chr3.3:4548948-4548967 | None:intergenic | 20.0% |
| !! | TAATAAAGAAACAATTTAGG+TGG | + | chr3.3:4549328-4549347 | None:intergenic | 20.0% |
| !! | TCAACAAAAATTAATGTATC+TGG | + | chr3.3:4548864-4548883 | None:intergenic | 20.0% |
| !! | TCCATTTATTAAAGACATTT+AGG | - | chr3.3:4548802-4548821 | MS.gene56250:intron | 20.0% |
| !!! | AATGCTCTAAATAAAATTGA+GGG | + | chr3.3:4548537-4548556 | None:intergenic | 20.0% |
| !!! | GTTTGATCATTTTTCTAAAT+TGG | + | chr3.3:4549768-4549787 | None:intergenic | 20.0% |
| !!! | TAATGCTCTAAATAAAATTG+AGG | + | chr3.3:4548538-4548557 | None:intergenic | 20.0% |
| !!! | TTTTAATCAAGTTATGTACT+CGG | - | chr3.3:4549221-4549240 | MS.gene56250:intron | 20.0% |
| ! | AAATTATCAAGGCACAAATT+GGG | - | chr3.3:4549923-4549942 | MS.gene56250:intron | 25.0% |
| ! | ACAATTGTAAACACATTACA+AGG | - | chr3.3:4549975-4549994 | MS.gene56250:CDS | 25.0% |
| ! | ATGTCTTTAATAAATGGAAC+TGG | + | chr3.3:4548800-4548819 | None:intergenic | 25.0% |
| ! | ATTGAGCCTTCATAAATATA+TGG | + | chr3.3:4549884-4549903 | None:intergenic | 25.0% |
| ! | GAAAAAAGATGTTATGACAT+TGG | + | chr3.3:4549555-4549574 | None:intergenic | 25.0% |
| ! | GAATTGTTGAAAATCTTAGT+TGG | - | chr3.3:4550088-4550107 | MS.gene56250:intron | 25.0% |
| ! | GTGTTCAACAAAAAATTTGT+GGG | - | chr3.3:4549019-4549038 | MS.gene56250:intron | 25.0% |
| ! | TGTTCAACAAAAAATTTGTG+GGG | - | chr3.3:4549020-4549039 | MS.gene56250:intron | 25.0% |
| ! | TTCAGATTTATGTCACAAAA+TGG | - | chr3.3:4550186-4550205 | MS.gene56250:intron | 25.0% |
| !! | AATTCAAATTGATTAGCTAG+AGG | + | chr3.3:4549200-4549219 | None:intergenic | 25.0% |
| !! | GTTTGATCATTTTCCTATAT+CGG | - | chr3.3:4549287-4549306 | MS.gene56250:intron | 25.0% |
| !!! | CATTGTGTATGTTTTGATTT+AGG | - | chr3.3:4548623-4548642 | MS.gene56250:intron | 25.0% |
| AAATATCTTTGTGCTGAAGA+TGG | - | chr3.3:4548684-4548703 | MS.gene56250:CDS | 30.0% | |
| AAGATCTAATCCCAATAACA+CGG | + | chr3.3:4549609-4549628 | None:intergenic | 30.0% | |
| AATATCTTTGTGCTGAAGAT+GGG | - | chr3.3:4548685-4548704 | MS.gene56250:CDS | 30.0% | |
| AATTGTCAACAAAGATCTCT+TGG | - | chr3.3:4548504-4548523 | MS.gene56250:CDS | 30.0% | |
| AGCTCAAAACTAAGATGAAA+TGG | + | chr3.3:4550118-4550137 | None:intergenic | 30.0% | |
| ATTGTCATATGAAAAACCGA+TGG | + | chr3.3:4549960-4549979 | None:intergenic | 30.0% | |
| CAAATTATCAAGGCACAAAT+TGG | - | chr3.3:4549922-4549941 | MS.gene56250:intron | 30.0% | |
| CAGTTATGTATGAATTCCAA+TGG | + | chr3.3:4550158-4550177 | None:intergenic | 30.0% | |
| CTCTGACCATATATTTATGA+AGG | - | chr3.3:4549875-4549894 | MS.gene56250:intron | 30.0% | |
| CTTCATAAATATATGGTCAG+AGG | + | chr3.3:4549877-4549896 | None:intergenic | 30.0% | |
| GGTGTTCAACAAAAAATTTG+TGG | - | chr3.3:4549018-4549037 | MS.gene56250:intron | 30.0% | |
| GTTAGTGCAATTGAAAACAT+CGG | - | chr3.3:4549390-4549409 | MS.gene56250:intron | 30.0% | |
| TAATTAGAACTTACAAAGGG+TGG | + | chr3.3:4548944-4548963 | None:intergenic | 30.0% | |
| TACCAACTTACTAATGGTTA+TGG | - | chr3.3:4550002-4550021 | MS.gene56250:CDS | 30.0% | |
| TGAAATGTTTCTTTGTTGCT+AGG | + | chr3.3:4549094-4549113 | None:intergenic | 30.0% | |
| TTAGTGACAGCAAATTATCA+AGG | - | chr3.3:4549912-4549931 | MS.gene56250:intron | 30.0% | |
| TTAGTGCAATTGAAAACATC+GGG | - | chr3.3:4549391-4549410 | MS.gene56250:intron | 30.0% | |
| TTGAACTTCTTAATACTAGG+AGG | + | chr3.3:4548579-4548598 | None:intergenic | 30.0% | |
| TTTGTGGGGTTAAATACTAT+AGG | - | chr3.3:4549034-4549053 | MS.gene56250:intron | 30.0% | |
| ! | ATGACTCATCCTTCAATTTT+AGG | - | chr3.3:4548996-4549015 | MS.gene56250:intron | 30.0% |
| ! | CTATTTCCCACCTTTAAAAA+CGG | - | chr3.3:4549368-4549387 | MS.gene56250:intron | 30.0% |
| ! | TCTTTTATAAATAGGTCCGA+TGG | - | chr3.3:4548892-4548911 | MS.gene56250:intron | 30.0% |
| ! | TGACTCATCCTTCAATTTTA+GGG | - | chr3.3:4548997-4549016 | MS.gene56250:intron | 30.0% |
| !! | ATTGCACTAACCGTTTTTAA+AGG | + | chr3.3:4549381-4549400 | None:intergenic | 30.0% |
| !! | ATTTGATGGATGTTTTCTGA+AGG | + | chr3.3:4549468-4549487 | None:intergenic | 30.0% |
| !! | GTTTTCTGAAGGGTTATTAT+GGG | + | chr3.3:4549457-4549476 | None:intergenic | 30.0% |
| !! | TGTTTTCTGAAGGGTTATTA+TGG | + | chr3.3:4549458-4549477 | None:intergenic | 30.0% |
| !! | TTTGATGGATGTTTTCTGAA+GGG | + | chr3.3:4549467-4549486 | None:intergenic | 30.0% |
| !!! | ATCAAATGGTCTATTTTTGC+AGG | - | chr3.3:4549159-4549178 | MS.gene56250:intron | 30.0% |
| !!! | GTGTATGTTTTGATTTAGGA+TGG | - | chr3.3:4548627-4548646 | MS.gene56250:intron | 30.0% |
| AATCAACTTGACCGTGTTAT+TGG | - | chr3.3:4549595-4549614 | MS.gene56250:CDS | 35.0% | |
| ACAATTCCTTCAAAGAGAGA+AGG | + | chr3.3:4548490-4548509 | None:intergenic | 35.0% | |
| ATATCTTTGTGCTGAAGATG+GGG | - | chr3.3:4548686-4548705 | MS.gene56250:CDS | 35.0% | |
| ATGAAACCTTCTCTCTTTGA+AGG | - | chr3.3:4548481-4548500 | MS.gene56250:CDS | 35.0% | |
| ATTAGCTAGAGGATGGAATA+AGG | + | chr3.3:4549189-4549208 | None:intergenic | 35.0% | |
| GACCATAACCATTAGTAAGT+TGG | + | chr3.3:4550007-4550026 | None:intergenic | 35.0% | |
| GTTGAACACCCTAAAATTGA+AGG | + | chr3.3:4549008-4549027 | None:intergenic | 35.0% | |
| TAAAGGTGGGAAATAGACTA+CGG | + | chr3.3:4549364-4549383 | None:intergenic | 35.0% | |
| ! | ATCAACTTGACCGTGTTATT+GGG | - | chr3.3:4549596-4549615 | MS.gene56250:CDS | 35.0% |
| ! | ATGCTTTGATTCGAACTTTG+AGG | + | chr3.3:4549141-4549160 | None:intergenic | 35.0% |
| ! | CAAATTGATTAGCTAGAGGA+TGG | + | chr3.3:4549196-4549215 | None:intergenic | 35.0% |
| ! | GTTCGAATCAAAGCATCAAA+TGG | - | chr3.3:4549145-4549164 | MS.gene56250:intron | 35.0% |
| ! | TGCTTTGATTCGAACTTTGA+GGG | + | chr3.3:4549140-4549159 | None:intergenic | 35.0% |
| ! | TTTTCACTTGCAAAGTAGCT+TGG | - | chr3.3:4549570-4549589 | MS.gene56250:CDS | 35.0% |
| !! | AAAATGGATTAGATGCTGTC+AGG | - | chr3.3:4550202-4550221 | MS.gene56250:CDS | 35.0% |
| !! | CACTAACCGTTTTTAAAGGT+GGG | + | chr3.3:4549377-4549396 | None:intergenic | 35.0% |
| !! | CATTAATTTGCAGCTTTGGA+GGG | - | chr3.3:4548970-4548989 | MS.gene56250:intron | 35.0% |
| !! | TCATTAATTTGCAGCTTTGG+AGG | - | chr3.3:4548969-4548988 | MS.gene56250:intron | 35.0% |
| !! | TGCTCATTAATTTGCAGCTT+TGG | - | chr3.3:4548966-4548985 | MS.gene56250:intron | 35.0% |
| !!! | TTGAGCTTTGTTTTCTTTGC+AGG | - | chr3.3:4550131-4550150 | MS.gene56250:intron | 35.0% |
| AAAGGGTGGATATGGATCAT+AGG | + | chr3.3:4550250-4550269 | None:intergenic | 40.0% | |
| AAGCTGTGAATCTAGGAAAC+TGG | - | chr3.3:4548440-4548459 | MS.gene56250:CDS | 40.0% | |
| ATGGGAGACATATATTCTCC+CGG | + | chr3.3:4549439-4549458 | None:intergenic | 40.0% | |
| ATTCTCACCCTTAAGACTTG+AGG | + | chr3.3:4550041-4550060 | None:intergenic | 40.0% | |
| CCATACAAAGCTGTGAATCT+AGG | - | chr3.3:4548433-4548452 | MS.gene56250:CDS | 40.0% | |
| GCAATGGACAAAGACCTTAA+TGG | + | chr3.3:4549417-4549436 | None:intergenic | 40.0% | |
| GGGTTAAATACTATAGGAGG+AGG | - | chr3.3:4549040-4549059 | MS.gene56250:intron | 40.0% | |
| GTGGGGTTAAATACTATAGG+AGG | - | chr3.3:4549037-4549056 | MS.gene56250:intron | 40.0% | |
| TATCTTTGTGCTGAAGATGG+GGG | - | chr3.3:4548687-4548706 | MS.gene56250:CDS | 40.0% | |
| TGTCTTAATCGTTGCTGACA+GGG | + | chr3.3:4549518-4549537 | None:intergenic | 40.0% | |
| TTAAGGTCTTTGTCCATTGC+CGG | - | chr3.3:4549417-4549436 | MS.gene56250:intron | 40.0% | |
| TTCTCACCCTTAAGACTTGA+GGG | + | chr3.3:4550040-4550059 | None:intergenic | 40.0% | |
| TTGAAAACATCGGGCCATTA+AGG | - | chr3.3:4549400-4549419 | MS.gene56250:intron | 40.0% | |
| TTGAATGTTTCCCAACCAGA+AGG | + | chr3.3:4548744-4548763 | None:intergenic | 40.0% | |
| TTGGGATGACAATGATCCAT+CGG | - | chr3.3:4549941-4549960 | MS.gene56250:intron | 40.0% | |
| ! | AGATTCACAGCTTTGTATGG+CGG | + | chr3.3:4548433-4548452 | None:intergenic | 40.0% |
| ! | ATCCATATCCACCCTTTTGT+CGG | - | chr3.3:4550253-4550272 | MS.gene56250:CDS | 40.0% |
| ! | CCTAGATTCACAGCTTTGTA+TGG | + | chr3.3:4548436-4548455 | None:intergenic | 40.0% |
| ! | CTTTTCTCGAATCACTGACA+TGG | + | chr3.3:4549639-4549658 | None:intergenic | 40.0% |
| ! | GCTTTGATTCGAACTTTGAG+GGG | + | chr3.3:4549139-4549158 | None:intergenic | 40.0% |
| ! | TGTTTTCTTTGCAGGACCAT+TGG | - | chr3.3:4550139-4550158 | MS.gene56250:intron | 40.0% |
| !! | GCACTAACCGTTTTTAAAGG+TGG | + | chr3.3:4549378-4549397 | None:intergenic | 40.0% |
| !! | GGAGAGTACCAACTTACTAA+TGG | - | chr3.3:4549996-4550015 | MS.gene56250:CDS | 40.0% |
| !!! | GAATCTAGGAAACTGGCTTT+TGG | - | chr3.3:4548447-4548466 | MS.gene56250:CDS | 40.0% |
| ATAGAGCCCCTCAAGTCTTA+AGG | - | chr3.3:4550030-4550049 | MS.gene56250:CDS | 45.0% | |
| GACATATATTCTCCCGGCAA+TGG | + | chr3.3:4549433-4549452 | None:intergenic | 45.0% | |
| GTCAGAGGATTCACACTTCT+AGG | + | chr3.3:4549862-4549881 | None:intergenic | 45.0% | |
| GTGTCTTAATCGTTGCTGAC+AGG | + | chr3.3:4549519-4549538 | None:intergenic | 45.0% | |
| TAAGGTCTTTGTCCATTGCC+GGG | - | chr3.3:4549418-4549437 | MS.gene56250:intron | 45.0% | |
| TAGAGCCCCTCAAGTCTTAA+GGG | - | chr3.3:4550031-4550050 | MS.gene56250:CDS | 45.0% | |
| TCTCACCCTTAAGACTTGAG+GGG | + | chr3.3:4550039-4550058 | None:intergenic | 45.0% | |
| ! | TCCATATCCACCCTTTTGTC+GGG | - | chr3.3:4550254-4550273 | MS.gene56250:CDS | 45.0% |
| AAGACTTGAGGGGCTCTATC+TGG | + | chr3.3:4550029-4550048 | None:intergenic | 50.0% | |
| ACTGCTATTGTAGCCAACCG+TGG | - | chr3.3:4548714-4548733 | MS.gene56250:CDS | 50.0% | |
| CCAAAGATCCCCCGACAAAA+GGG | + | chr3.3:4550267-4550286 | None:intergenic | 50.0% | |
| CTGTCAGGATACCTGTTGGA+TGG | - | chr3.3:4550217-4550236 | MS.gene56250:CDS | 50.0% | |
| GATGCTGTCAGGATACCTGT+TGG | - | chr3.3:4550213-4550232 | MS.gene56250:CDS | 50.0% | |
| TAGGCTATCCACCATCCAAC+AGG | + | chr3.3:4550231-4550250 | None:intergenic | 50.0% | |
| TCAGGATACCTGTTGGATGG+TGG | - | chr3.3:4550220-4550239 | MS.gene56250:CDS | 50.0% | |
| ! | CATATCCACCCTTTTGTCGG+GGG | - | chr3.3:4550256-4550275 | MS.gene56250:CDS | 50.0% |
| ! | CCATATCCACCCTTTTGTCG+GGG | - | chr3.3:4550255-4550274 | MS.gene56250:CDS | 50.0% |
| !!! | AGGAAACTGGCTTTTGGCTG+AGG | - | chr3.3:4548453-4548472 | MS.gene56250:CDS | 50.0% |
| !!! | GGAAACTGGCTTTTGGCTGA+GGG | - | chr3.3:4548454-4548473 | MS.gene56250:CDS | 50.0% |
| AAGATCCCCCGACAAAAGGG+TGG | + | chr3.3:4550264-4550283 | None:intergenic | 55.0% | |
| ACCAGAAGGTGAACCACGGT+TGG | + | chr3.3:4548730-4548749 | None:intergenic | 55.0% | |
| ACCGTGGTTCACCTTCTGGT+TGG | - | chr3.3:4548730-4548749 | MS.gene56250:CDS | 55.0% | |
| CCCAACCAGAAGGTGAACCA+CGG | + | chr3.3:4548734-4548753 | None:intergenic | 55.0% | |
| CCCCGACAAAAGGGTGGATA+TGG | + | chr3.3:4550258-4550277 | None:intergenic | 55.0% | |
| CTTTGTGCTGAAGATGGGGG+AGG | - | chr3.3:4548690-4548709 | MS.gene56250:CDS | 55.0% | |
| GCCAAAGATCCCCCGACAAA+AGG | + | chr3.3:4550268-4550287 | None:intergenic | 55.0% | |
| ! | CCCTTTTGTCGGGGGATCTT+TGG | - | chr3.3:4550264-4550283 | MS.gene56250:CDS | 55.0% |
| ! | CCGTGGTTCACCTTCTGGTT+GGG | - | chr3.3:4548731-4548750 | MS.gene56250:CDS | 55.0% |
| !!! | ACTGGCTTTTGGCTGAGGGA+TGG | - | chr3.3:4548458-4548477 | MS.gene56250:CDS | 55.0% |
| GCCAACCGTGGTTCACCTTC+TGG | - | chr3.3:4548726-4548745 | MS.gene56250:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 4548421 | 4550296 | 4548421 | ID=MS.gene56250 |
| chr3.3 | mRNA | 4548421 | 4550296 | 4548421 | ID=MS.gene56250.t1;Parent=MS.gene56250 |
| chr3.3 | exon | 4550192 | 4550296 | 4550192 | ID=MS.gene56250.t1.exon1;Parent=MS.gene56250.t1 |
| chr3.3 | CDS | 4550192 | 4550296 | 4550192 | ID=cds.MS.gene56250.t1;Parent=MS.gene56250.t1 |
| chr3.3 | exon | 4549953 | 4550072 | 4549953 | ID=MS.gene56250.t1.exon2;Parent=MS.gene56250.t1 |
| chr3.3 | CDS | 4549953 | 4550072 | 4549953 | ID=cds.MS.gene56250.t1;Parent=MS.gene56250.t1 |
| chr3.3 | exon | 4549537 | 4549734 | 4549537 | ID=MS.gene56250.t1.exon3;Parent=MS.gene56250.t1 |
| chr3.3 | CDS | 4549537 | 4549734 | 4549537 | ID=cds.MS.gene56250.t1;Parent=MS.gene56250.t1 |
| chr3.3 | exon | 4548665 | 4548820 | 4548665 | ID=MS.gene56250.t1.exon4;Parent=MS.gene56250.t1 |
| chr3.3 | CDS | 4548665 | 4548820 | 4548665 | ID=cds.MS.gene56250.t1;Parent=MS.gene56250.t1 |
| chr3.3 | exon | 4548421 | 4548564 | 4548421 | ID=MS.gene56250.t1.exon5;Parent=MS.gene56250.t1 |
| chr3.3 | CDS | 4548421 | 4548564 | 4548421 | ID=cds.MS.gene56250.t1;Parent=MS.gene56250.t1 |
| Gene Sequence |
| Protein sequence |
