AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56731

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56731.t1 MTR_6g009480 96.234 239 9 0 1 239 1 239 3.80e-172 475
MS.gene56731.t1 MTR_6g079580 49.160 238 109 6 3 239 1 227 1.22e-72 221
MS.gene56731.t1 MTR_8g107140 46.919 211 105 4 33 242 31 235 2.97e-65 203
MS.gene56731.t1 MTR_3g068015 41.667 240 133 3 8 243 3 239 3.74e-65 203
MS.gene56731.t1 MTR_3g111620 42.918 233 127 4 1 233 1 227 7.08e-62 194
MS.gene56731.t1 MTR_8g036215 47.059 221 111 4 17 236 7 222 8.19e-62 194
MS.gene56731.t1 MTR_1g062340 44.196 224 116 6 17 239 13 228 1.88e-60 191
MS.gene56731.t1 MTR_5g059200 46.320 231 111 7 14 243 13 231 2.84e-60 191
MS.gene56731.t1 MTR_1g021945 50.000 206 93 7 31 233 28 226 3.97e-60 190
MS.gene56731.t1 MTR_1g062350 45.872 218 109 6 17 233 13 222 5.39e-60 189
MS.gene56731.t1 MTR_4g073720 43.852 244 123 8 1 243 1 231 6.14e-60 192
MS.gene56731.t1 MTR_1g062370 45.413 218 110 6 17 233 13 222 9.79e-60 189
MS.gene56731.t1 MTR_1g062630 44.105 229 119 6 6 233 2 222 1.44e-59 189
MS.gene56731.t1 MTR_1g025420 45.498 211 110 5 28 236 22 229 2.81e-59 188
MS.gene56731.t1 MTR_1g062660 45.413 218 110 6 17 233 13 222 3.64e-59 187
MS.gene56731.t1 MTR_1g025420 43.172 227 120 7 13 236 9 229 4.38e-59 189
MS.gene56731.t1 MTR_7g062610 41.250 240 134 4 4 243 1 233 1.81e-58 186
MS.gene56731.t1 MTR_1g062590 42.358 229 123 5 6 233 2 222 2.36e-58 185
MS.gene56731.t1 MTR_3g114030 47.393 211 106 5 28 236 6 213 2.85e-58 185
MS.gene56731.t1 MTR_5g022310 40.506 237 135 4 4 236 1 235 2.81e-57 183
MS.gene56731.t1 MTR_7g102380 41.850 227 123 6 8 233 3 221 5.02e-57 182
MS.gene56731.t1 MTR_5g022310 40.506 237 135 4 4 236 1 235 8.42e-57 183
MS.gene56731.t1 MTR_2g069660 45.089 224 117 5 11 233 5 223 1.32e-56 181
MS.gene56731.t1 MTR_4g073730 45.455 231 119 6 10 236 5 232 1.87e-56 182
MS.gene56731.t1 MTR_4g073730 45.455 231 119 6 10 236 5 232 5.19e-56 182
MS.gene56731.t1 MTR_8g075510 44.255 235 115 8 10 243 15 234 9.70e-56 179
MS.gene56731.t1 MTR_8g075550 44.395 223 113 5 21 236 20 238 1.91e-55 180
MS.gene56731.t1 MTR_8g075510 44.255 235 115 8 10 243 15 234 2.20e-55 180
MS.gene56731.t1 MTR_4g063630 43.946 223 117 5 18 236 17 235 2.66e-55 177
MS.gene56731.t1 MTR_5g022350 42.411 224 115 7 14 236 17 227 1.00e-54 178
MS.gene56731.t1 MTR_2g068030 44.712 208 109 5 31 236 25 228 1.20e-54 176
MS.gene56731.t1 MTR_8g037890 41.026 234 134 4 4 236 1 231 1.23e-54 178
MS.gene56731.t1 MTR_8g056820 41.202 233 132 5 6 236 2 231 3.47e-52 170
MS.gene56731.t1 MTR_2g067980 40.598 234 131 5 7 236 2 231 4.34e-50 176
MS.gene56731.t1 MTR_2g068655 41.627 209 118 4 26 233 28 233 4.10e-48 161
MS.gene56731.t1 MTR_1g062690 39.908 218 98 6 17 233 13 198 1.76e-46 154
MS.gene56731.t1 MTR_5g010635 38.389 211 105 8 27 236 22 208 7.74e-37 130
MS.gene56731.t1 MTR_5g023850 39.779 181 102 6 13 190 11 187 1.49e-34 124
MS.gene56731.t1 MTR_2g067990 38.756 209 100 7 29 236 27 208 7.36e-33 126
MS.gene56731.t1 MTR_8g096900 34.025 241 131 9 1 239 20 234 9.20e-33 119
MS.gene56731.t1 MTR_5g010640 33.333 243 131 9 1 236 1 219 1.12e-32 119
MS.gene56731.t1 MTR_5g022350 42.667 150 76 6 14 162 82 222 4.05e-31 114
MS.gene56731.t1 MTR_2g067970 40.244 164 92 6 70 230 1 161 9.09e-31 120
MS.gene56731.t1 MTR_8g089020 45.669 127 62 3 112 238 31 150 1.15e-30 111
MS.gene56731.t1 MTR_2g063150 35.052 194 119 4 41 233 46 233 3.01e-30 113
MS.gene56731.t1 MTR_8g096910 37.500 168 85 8 6 172 2 150 2.20e-23 93.2
MS.gene56731.t1 MTR_8g096920 39.073 151 75 7 23 172 13 147 2.10e-22 90.5
MS.gene56731.t1 MTR_1g062390 29.114 237 144 8 10 240 7 225 2.42e-21 89.7
MS.gene56731.t1 MTR_7g076360 32.075 212 76 6 26 236 5 149 5.59e-20 84.3
MS.gene56731.t1 MTR_3g081550 41.837 98 54 3 114 210 16 111 1.14e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56731.t1 AT5G40020 64.167 240 83 2 4 243 3 239 1.10e-113 326
MS.gene56731.t1 AT5G24620 45.217 230 121 2 8 233 4 232 1.47e-65 209
MS.gene56731.t1 AT5G24620 45.217 230 121 2 8 233 59 287 4.66e-65 209
MS.gene56731.t1 AT5G24620 45.217 230 121 2 8 233 80 308 7.20e-65 209
MS.gene56731.t1 AT1G18250 46.919 211 105 4 29 238 22 226 1.12e-63 199
MS.gene56731.t1 AT1G18250 46.919 211 105 4 29 238 21 225 1.14e-63 199
MS.gene56731.t1 AT4G24180 43.725 247 126 5 1 242 3 241 5.02e-63 197
MS.gene56731.t1 AT4G24180 43.373 249 129 5 1 242 3 246 5.59e-63 197
MS.gene56731.t1 AT4G24180 43.725 247 126 5 1 242 3 241 1.49e-62 198
MS.gene56731.t1 AT4G24180 43.373 249 129 5 1 242 3 246 2.11e-62 198
MS.gene56731.t1 AT4G24180 44.398 241 121 5 1 236 3 235 1.12e-61 196
MS.gene56731.t1 AT4G24180 44.033 243 124 5 1 236 3 240 1.27e-61 196
MS.gene56731.t1 AT1G73620 45.116 215 111 4 25 238 38 246 1.46e-61 194
MS.gene56731.t1 AT2G28790 42.373 236 130 4 3 236 1 232 2.29e-60 191
MS.gene56731.t1 AT1G75050 42.735 234 125 7 11 243 9 234 2.46e-60 190
MS.gene56731.t1 AT2G28790 42.616 237 128 5 3 236 26 257 3.16e-60 191
MS.gene56731.t1 AT1G77700 44.033 243 124 6 1 243 33 263 1.57e-59 191
MS.gene56731.t1 AT1G77700 48.598 214 98 6 30 243 62 263 1.59e-59 191
MS.gene56731.t1 AT4G38660 46.445 211 103 5 27 236 28 229 2.00e-59 191
MS.gene56731.t1 AT4G38660 46.445 211 103 5 27 236 6 207 3.74e-59 190
MS.gene56731.t1 AT1G75040 45.726 234 114 10 11 243 9 230 7.98e-59 186
MS.gene56731.t1 AT1G77700 48.826 213 97 6 31 243 91 291 9.14e-59 190
MS.gene56731.t1 AT1G75030 41.224 245 131 8 1 243 1 234 7.65e-58 184
MS.gene56731.t1 AT1G75800 43.231 229 120 6 9 233 6 228 3.06e-57 185
MS.gene56731.t1 AT1G20030 45.673 208 106 5 30 233 4 208 7.01e-55 178
MS.gene56731.t1 AT1G20030 45.673 208 106 5 30 233 21 225 7.38e-55 179
MS.gene56731.t1 AT1G19320 43.033 244 125 8 4 242 3 237 1.90e-54 175
MS.gene56731.t1 AT4G38670 41.485 229 129 5 10 236 5 230 2.22e-54 176
MS.gene56731.t1 AT4G38670 41.485 229 129 5 10 236 5 230 2.22e-54 176
MS.gene56731.t1 AT2G17860 42.544 228 124 5 13 236 9 233 1.76e-53 173
MS.gene56731.t1 AT5G02140 41.667 240 118 6 10 243 9 232 2.04e-53 172
MS.gene56731.t1 AT5G02140 42.083 240 117 7 10 243 9 232 2.19e-53 174
MS.gene56731.t1 AT4G38670 42.593 216 120 4 23 236 1 214 9.95e-53 172
MS.gene56731.t1 AT4G36010 41.509 212 118 3 27 233 21 231 4.13e-52 171
MS.gene56731.t1 AT4G36010 41.509 212 118 3 27 233 21 231 4.13e-52 171
MS.gene56731.t1 AT5G38280 38.462 234 136 5 10 240 9 237 6.37e-49 170
MS.gene56731.t1 AT5G38280 38.462 234 136 5 10 240 9 237 9.17e-49 170
MS.gene56731.t1 AT4G18253 34.956 226 133 6 9 233 6 218 4.54e-37 130
MS.gene56731.t1 AT4G11650 35.897 234 122 10 13 242 4 213 1.74e-35 126
MS.gene56731.t1 AT4G36000 46.970 132 60 4 105 236 1 122 8.17e-33 119
MS.gene56731.t1 AT4G36000 46.970 132 60 4 105 236 1 122 8.17e-33 119
MS.gene56731.t1 AT4G18250 37.445 227 127 8 8 232 38 251 3.56e-32 124
MS.gene56731.t1 AT1G70250 37.089 213 114 9 30 233 146 347 5.12e-30 118
MS.gene56731.t1 AT5G24620 48.515 101 48 1 137 233 15 115 1.55e-27 107
MS.gene56731.t1 AT2G24810 53.333 60 27 1 174 233 116 174 1.50e-12 64.7

Find 52 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTACTCGAAAATATTTA+AGG 0.141708 6.2:+5036189 MS.gene56731:CDS
AGACTAACATCATAGAAATT+TGG 0.226393 6.2:-5035935 None:intergenic
GGTCATGGAGTGGTAGAATT+TGG 0.228734 6.2:+5035765 MS.gene56731:CDS
ACATTTGGCCTACACTTCTT+AGG 0.242147 6.2:-5036169 None:intergenic
CCAGTGTTTGGTGCTGTTGC+TGG 0.252470 6.2:-5035674 None:intergenic
AATCCACCTTCTGCTATAAT+TGG 0.270425 6.2:-5035701 None:intergenic
TGGAAACCATCTTGTGAAAC+TGG 0.283626 6.2:+5035821 MS.gene56731:CDS
GATTCAGAATGCAGCTATTA+AGG 0.286163 6.2:+5034841 None:intergenic
GAAGAAAATTAAAGGGGTTA+TGG 0.311977 6.2:-5034865 None:intergenic
GAGATTATGAAGAAAATTAA+AGG 0.312086 6.2:-5034873 None:intergenic
AAAGCATAGCTAAAATAATT+AGG 0.333353 6.2:-5036220 None:intergenic
ATAAATGTCCATTTCCAATA+TGG 0.340228 6.2:+5035651 MS.gene56731:CDS
TATGATGTTAGTCTTGTTGA+TGG 0.351124 6.2:+5035944 MS.gene56731:CDS
ATCACACTTCAAGGTGATAA+AGG 0.353029 6.2:+5035908 MS.gene56731:CDS
TGTTGATGGTTACAACATTC+CGG 0.373965 6.2:+5035958 MS.gene56731:CDS
GTCATGGAGTGGTAGAATTT+GGG 0.407113 6.2:+5035766 MS.gene56731:CDS
GGTGGATTCTACCTTCCTTC+AGG 0.416706 6.2:+5035716 MS.gene56731:CDS
GGCTTGCAAAAGTGCTTGTT+TGG 0.422698 6.2:+5036102 MS.gene56731:CDS
AGATTATGAAGAAAATTAAA+GGG 0.426233 6.2:-5034872 None:intergenic
TTAGCTTGCAATGGACTCAT+TGG 0.427841 6.2:+5035860 MS.gene56731:CDS
GGTAGAATTTGGGCTAGAAC+AGG 0.432125 6.2:+5035776 MS.gene56731:CDS
TTAGTTGAAATCACACTTCA+AGG 0.433506 6.2:+5035899 MS.gene56731:CDS
ATAATTGGTTGACCAGTGTT+TGG 0.435185 6.2:-5035686 None:intergenic
AATTCGAAGTGTAACATTCA+AGG 0.437934 6.2:+5036010 MS.gene56731:CDS
GGTGCTGTTGCTGGCCATAT+TGG 0.448741 6.2:-5035665 None:intergenic
CAATCCCCAGTTTCACAAGA+TGG 0.451184 6.2:-5035827 None:intergenic
TAACATTCAAGGTTGTTGTA+AGG 0.467243 6.2:+5036021 MS.gene56731:CDS
GTTGCTGGCCATATTGGAAA+TGG 0.470631 6.2:-5035659 None:intergenic
GTGATTTCAACTAATGTAGC+TGG 0.473742 6.2:-5035890 None:intergenic
TTAGCGACGACGACAGATAC+CGG 0.516926 6.2:-5035977 None:intergenic
AAATTCTAGCACCATGGTCA+TGG 0.538771 6.2:+5035750 MS.gene56731:CDS
AAATTCTAATGGAGAAGTTG+TGG 0.540338 6.2:+5036081 MS.gene56731:CDS
GGAAACCATCTTGTGAAACT+GGG 0.562657 6.2:+5035822 MS.gene56731:CDS
TCTTTGTTTGGCCTGAAGGA+AGG 0.566171 6.2:-5035727 None:intergenic
ATGGAAGTCCTAAGAAGTGT+AGG 0.582085 6.2:+5036161 MS.gene56731:CDS
CCACAACTCACAAGTGGAGT+AGG 0.582731 6.2:-5036250 None:intergenic
TTTGTGTCCTCGTGAGCTTG+AGG 0.598513 6.2:+5036054 MS.gene56731:CDS
GATGGAAGGTTAGCTTGCAA+TGG 0.609410 6.2:+5035851 MS.gene56731:CDS
CAACCAATTATAGCAGAAGG+TGG 0.611874 6.2:+5035698 MS.gene56731:CDS
GTGCCAACAGTTGAGATTGA+CGG 0.618486 6.2:+5036328 MS.gene56731:intron
TGTGAAACTGGGGATTGTGA+TGG 0.623588 6.2:+5035833 MS.gene56731:CDS
GGTCAACCAATTATAGCAGA+AGG 0.626979 6.2:+5035695 MS.gene56731:CDS
GATTATGAAGAAAATTAAAG+GGG 0.634406 6.2:-5034871 None:intergenic
CAAAGAAAATTCTAGCACCA+TGG 0.637826 6.2:+5035744 MS.gene56731:CDS
GAAACCATCTTGTGAAACTG+GGG 0.649627 6.2:+5035823 MS.gene56731:CDS
TTTAAAACCTCAAGCTCACG+AGG 0.649763 6.2:-5036061 None:intergenic
TAATTTGTAGGGATTGTCGA+AGG 0.651913 6.2:+5035602 MS.gene56731:intron
CCAGCAACAGCACCAAACAC+TGG 0.657996 6.2:+5035674 MS.gene56731:CDS
AAACTGGGGATTGTGATGGA+AGG 0.660610 6.2:+5035837 MS.gene56731:CDS
CTAGCACCATGGTCATGGAG+TGG 0.668399 6.2:+5035755 MS.gene56731:CDS
ATTCTACCACTCCATGACCA+TGG 0.689426 6.2:-5035761 None:intergenic
ATTTCAACTAATGTAGCTGG+AGG 0.737611 6.2:-5035887 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTGATTATATATTCTA+AGG - chr6.2:5036278-5036297 None:intergenic 15.0%
!! AGATTATGAAGAAAATTAAA+GGG - chr6.2:5034875-5034894 None:intergenic 15.0%
!!! ACTAAAACTAAATAATTTGT+AGG + chr6.2:5035590-5035609 MS.gene56731:intron 15.0%
!!! ATTTTCTCAATGAATATTAT+TGG + chr6.2:5035246-5035265 MS.gene56731:intron 15.0%
!!! CTAAAACTAAATAATTTGTA+GGG + chr6.2:5035591-5035610 MS.gene56731:intron 15.0%
!!! TTGTTTCTACAAATATATAA+TGG - chr6.2:5035000-5035019 None:intergenic 15.0%
!!! TTTAATTTTCTTCATAATCT+CGG + chr6.2:5034875-5034894 MS.gene56731:CDS 15.0%
!!! TTTTCTCAATGAATATTATT+GGG + chr6.2:5035247-5035266 MS.gene56731:intron 15.0%
!! AAAGCATAGCTAAAATAATT+AGG - chr6.2:5036223-5036242 None:intergenic 20.0%
!! ATTAAATATAACTAGGTATG+TGG - chr6.2:5035537-5035556 None:intergenic 20.0%
!! CTATAAATATGAAATTACCA+TGG - chr6.2:5034911-5034930 None:intergenic 20.0%
!! GAGATTATGAAGAAAATTAA+AGG - chr6.2:5034876-5034895 None:intergenic 20.0%
!! GATTATGAAGAAAATTAAAG+GGG - chr6.2:5034874-5034893 None:intergenic 20.0%
!! GTAAGTGATTAAATATAACT+AGG - chr6.2:5035544-5035563 None:intergenic 20.0%
!! TATGAAATGTATAGATATAG+TGG - chr6.2:5034937-5034956 None:intergenic 20.0%
!! TGTTTACTCGAAAATATTTA+AGG + chr6.2:5036189-5036208 MS.gene56731:CDS 20.0%
!! TTAAATATAACTAGGTATGT+GGG - chr6.2:5035536-5035555 None:intergenic 20.0%
!!! AATATTTTCGAGTAAACATT+TGG - chr6.2:5036187-5036206 None:intergenic 20.0%
!!! ACAACTGTAAAAAATGTTTT+AGG - chr6.2:5035036-5035055 None:intergenic 20.0%
! AGACTAACATCATAGAAATT+TGG - chr6.2:5035938-5035957 None:intergenic 25.0%
! ATAAATGTCCATTTCCAATA+TGG + chr6.2:5035651-5035670 MS.gene56731:CDS 25.0%
! ATTTGTAGAAACAAGATCAT+AGG + chr6.2:5035143-5035162 MS.gene56731:intron 25.0%
! ATTTGTAGAAACAAGATTAG+AGG + chr6.2:5035006-5035025 MS.gene56731:intron 25.0%
! CAACGATTATGATTACTTAA+AGG - chr6.2:5035321-5035340 None:intergenic 25.0%
!! ATAATCACATTTTGTCCTTA+TGG + chr6.2:5036286-5036305 MS.gene56731:intron 25.0%
!! GCAATTTTGCTTCAAATAAT+TGG + chr6.2:5035801-5035820 MS.gene56731:CDS 25.0%
!!! ATCTTGACAATTTTTGTTGT+AGG + chr6.2:5036131-5036150 MS.gene56731:CDS 25.0%
!!! CTTGAGGTTTTAAATTCTAA+TGG + chr6.2:5036070-5036089 MS.gene56731:CDS 25.0%
!!! TTTTGTTGTAGGAATGATTA+TGG + chr6.2:5036142-5036161 MS.gene56731:CDS 25.0%
AAATTCTAATGGAGAAGTTG+TGG + chr6.2:5036081-5036100 MS.gene56731:CDS 30.0%
AATTCGAAGTGTAACATTCA+AGG + chr6.2:5036010-5036029 MS.gene56731:CDS 30.0%
GAAGAAAATTAAAGGGGTTA+TGG - chr6.2:5034868-5034887 None:intergenic 30.0%
TAACATTCAAGGTTGTTGTA+AGG + chr6.2:5036021-5036040 MS.gene56731:CDS 30.0%
TTAGTTGAAATCACACTTCA+AGG + chr6.2:5035899-5035918 MS.gene56731:CDS 30.0%
! CACTAGTATTTAAGACAAGA+AGG - chr6.2:5035091-5035110 None:intergenic 30.0%
! GTGCTAGAATTTTCTTTGTT+TGG - chr6.2:5035742-5035761 None:intergenic 30.0%
!! TATGATGTTAGTCTTGTTGA+TGG + chr6.2:5035944-5035963 MS.gene56731:CDS 30.0%
AATCCACCTTCTGCTATAAT+TGG - chr6.2:5035704-5035723 None:intergenic 35.0%
AGCACCAACACTCAAATTAA+AGG + chr6.2:5035492-5035511 MS.gene56731:intron 35.0%
ATAATTGGTTGACCAGTGTT+TGG - chr6.2:5035689-5035708 None:intergenic 35.0%
ATCACACTTCAAGGTGATAA+AGG + chr6.2:5035908-5035927 MS.gene56731:CDS 35.0%
ATTTCAACTAATGTAGCTGG+AGG - chr6.2:5035890-5035909 None:intergenic 35.0%
CAAAGAAAATTCTAGCACCA+TGG + chr6.2:5035744-5035763 MS.gene56731:CDS 35.0%
GTGATTTCAACTAATGTAGC+TGG - chr6.2:5035893-5035912 None:intergenic 35.0%
TAGTTACACACTAGCTAGTT+AGG - chr6.2:5035469-5035488 None:intergenic 35.0%
! ACATTTTGTCCTTATGGATG+GGG + chr6.2:5036292-5036311 MS.gene56731:intron 35.0%
! CACATTTTGTCCTTATGGAT+GGG + chr6.2:5036291-5036310 MS.gene56731:intron 35.0%
! TAATTTGTAGGGATTGTCGA+AGG + chr6.2:5035602-5035621 MS.gene56731:intron 35.0%
! TCACATTTTGTCCTTATGGA+TGG + chr6.2:5036290-5036309 MS.gene56731:intron 35.0%
!! ATTTTCTTTGTTTGGCCTGA+AGG - chr6.2:5035734-5035753 None:intergenic 35.0%
!! TGTGCCTTTAATTTGAGTGT+TGG - chr6.2:5035499-5035518 None:intergenic 35.0%
!! TGTTGATGGTTACAACATTC+CGG + chr6.2:5035958-5035977 MS.gene56731:CDS 35.0%
AAATTCTAGCACCATGGTCA+TGG + chr6.2:5035750-5035769 MS.gene56731:CDS 40.0%
ACATTTGGCCTACACTTCTT+AGG - chr6.2:5036172-5036191 None:intergenic 40.0%
CAACCAATTATAGCAGAAGG+TGG + chr6.2:5035698-5035717 MS.gene56731:CDS 40.0%
GAAACCATCTTGTGAAACTG+GGG + chr6.2:5035823-5035842 MS.gene56731:CDS 40.0%
GGAAACCATCTTGTGAAACT+GGG + chr6.2:5035822-5035841 MS.gene56731:CDS 40.0%
GGTCAACCAATTATAGCAGA+AGG + chr6.2:5035695-5035714 MS.gene56731:CDS 40.0%
GTCATGGAGTGGTAGAATTT+GGG + chr6.2:5035766-5035785 MS.gene56731:CDS 40.0%
GTTAGGAGTTGAATTAGACG+CGG - chr6.2:5035452-5035471 None:intergenic 40.0%
TGGAAACCATCTTGTGAAAC+TGG + chr6.2:5035821-5035840 MS.gene56731:CDS 40.0%
TTGGGTTTACCACTAGTTAG+TGG + chr6.2:5035265-5035284 MS.gene56731:intron 40.0%
! ATCTCGGCTTACATTTTCCA+TGG + chr6.2:5034891-5034910 MS.gene56731:CDS 40.0%
! ATGGAAGTCCTAAGAAGTGT+AGG + chr6.2:5036161-5036180 MS.gene56731:CDS 40.0%
! TTTAAAACCTCAAGCTCACG+AGG - chr6.2:5036064-5036083 None:intergenic 40.0%
!! TTAGCTTGCAATGGACTCAT+TGG + chr6.2:5035860-5035879 MS.gene56731:CDS 40.0%
AAGGATCCACAACTCACAAG+TGG - chr6.2:5036259-5036278 None:intergenic 45.0%
ATTCTACCACTCCATGACCA+TGG - chr6.2:5035764-5035783 None:intergenic 45.0%
CAATCCCCAGTTTCACAAGA+TGG - chr6.2:5035830-5035849 None:intergenic 45.0%
GGTATGTGGGTGTCAAACAA+AGG - chr6.2:5035523-5035542 None:intergenic 45.0%
GGTCATGGAGTGGTAGAATT+TGG + chr6.2:5035765-5035784 MS.gene56731:CDS 45.0%
GTGCCAACAGTTGAGATTGA+CGG + chr6.2:5036328-5036347 MS.gene56731:intron 45.0%
GTTGCTGGCCATATTGGAAA+TGG - chr6.2:5035662-5035681 None:intergenic 45.0%
TGTGAAACTGGGGATTGTGA+TGG + chr6.2:5035833-5035852 MS.gene56731:CDS 45.0%
! AAACTGGGGATTGTGATGGA+AGG + chr6.2:5035837-5035856 MS.gene56731:CDS 45.0%
! GGTAGAATTTGGGCTAGAAC+AGG + chr6.2:5035776-5035795 MS.gene56731:CDS 45.0%
! TCTTTGTTTGGCCTGAAGGA+AGG - chr6.2:5035730-5035749 None:intergenic 45.0%
! TTTTGTCCTTATGGATGGGG+TGG + chr6.2:5036295-5036314 MS.gene56731:intron 45.0%
!! GATGGAAGGTTAGCTTGCAA+TGG + chr6.2:5035851-5035870 MS.gene56731:CDS 45.0%
!! GGCTTGCAAAAGTGCTTGTT+TGG + chr6.2:5036102-5036121 MS.gene56731:CDS 45.0%
!!! ATAAAATAAGTTTTTTTTTA+AGG - chr6.2:5035228-5035247 None:intergenic 5.0%
ACGCCGTCAATCTCAACTGT+TGG - chr6.2:5036334-5036353 None:intergenic 50.0%
CCACAACTCACAAGTGGAGT+AGG - chr6.2:5036253-5036272 None:intergenic 50.0%
CCTACTCCACTTGTGAGTTG+TGG + chr6.2:5036250-5036269 MS.gene56731:intron 50.0%
CTGTAGCGTCCACTAACTAG+TGG - chr6.2:5035277-5035296 None:intergenic 50.0%
TTAGCGACGACGACAGATAC+CGG - chr6.2:5035980-5035999 None:intergenic 50.0%
TTTGTGTCCTCGTGAGCTTG+AGG + chr6.2:5036054-5036073 MS.gene56731:CDS 50.0%
! GGTGGATTCTACCTTCCTTC+AGG + chr6.2:5035716-5035735 MS.gene56731:CDS 50.0%
CCAGCAACAGCACCAAACAC+TGG + chr6.2:5035674-5035693 MS.gene56731:CDS 55.0%
CTAGCACCATGGTCATGGAG+TGG + chr6.2:5035755-5035774 MS.gene56731:CDS 55.0%
!! CCAGTGTTTGGTGCTGTTGC+TGG - chr6.2:5035677-5035696 None:intergenic 55.0%
!! GGTGCTGTTGCTGGCCATAT+TGG - chr6.2:5035668-5035687 None:intergenic 55.0%
GCAGCACCACCCCATCCATA+AGG - chr6.2:5036304-5036323 None:intergenic 60.0%
!! TATGGATGGGGTGGTGCTGC+TGG + chr6.2:5036304-5036323 MS.gene56731:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 5034849 5036355 5034849 ID=MS.gene56731
chr6.2 mRNA 5034849 5036355 5034849 ID=MS.gene56731.t1;Parent=MS.gene56731
chr6.2 exon 5034849 5034912 5034849 ID=MS.gene56731.t1.exon1;Parent=MS.gene56731.t1
chr6.2 CDS 5034849 5034912 5034849 ID=cds.MS.gene56731.t1;Parent=MS.gene56731.t1
chr6.2 exon 5035612 5036261 5035612 ID=MS.gene56731.t1.exon2;Parent=MS.gene56731.t1
chr6.2 CDS 5035612 5036261 5035612 ID=cds.MS.gene56731.t1;Parent=MS.gene56731.t1
chr6.2 exon 5036338 5036355 5036338 ID=MS.gene56731.t1.exon3;Parent=MS.gene56731.t1
chr6.2 CDS 5036338 5036355 5036338 ID=cds.MS.gene56731.t1;Parent=MS.gene56731.t1
Gene Sequence

>MS.gene56731

ATGCAGCTATTAAGGTCCATAACCCCTTTAATTTTCTTCATAATCTCGGCTTACATTTTCCATGGTAATTTCATATTTATAGTGTCCACTATATCTATACATTTCATATGCATCATAGTGTGATTTTTTTTTTTTAAATTCATACTTACCATTATATATTTGTAGAAACAAGATTAGAGGTCTACCTAAAACATTTTTTACAGTTGTCTTAAATACTAGTGATTAACTCATTTTATTTTCCTTCTTGTCTTAAATACTAGTGATTATTTTTTAAATTCATACTTACCATTATATATTTGTAGAAACAAGATCATAGGTCTACCTAAAACATTTTTTACAGTTGTCTTAAATACTAGTGATTAACTCATTTTATTTTCCTTAAAAAAAAACTTATTTTATTTTCTCAATGAATATTATTGGGTTTACCACTAGTTAGTGGACGCTACAGATAATTTAGCACATAATTTCACCTTTAAGTAATCATAATCGTTGATTTGAGATTAGACAGTTTAAATTACACTGTCAGTTTCACACAATTAAATTATCTCAAATTTTGATTTATATCAGACGATCAAGATGCAATCTTGTATGATGCAGTTACCGCGTCTAATTCAACTCCTAACTAGCTAGTGTGTAACTATGTAGCACCAACACTCAAATTAAAGGCACATCCTTTGTTTGACACCCACATACCTAGTTATATTTAATCACTTACATAAAATTTTTGTTTTGTTGCTAATCACTAAAACTAAATAATTTGTAGGGATTGTCGAAGGACATCAAGCAACATTCTATATACACAATAAATGTCCATTTCCAATATGGCCAGCAACAGCACCAAACACTGGTCAACCAATTATAGCAGAAGGTGGATTCTACCTTCCTTCAGGCCAAACAAAGAAAATTCTAGCACCATGGTCATGGAGTGGTAGAATTTGGGCTAGAACAGGTTGCAATTTTGCTTCAAATAATTGGAAACCATCTTGTGAAACTGGGGATTGTGATGGAAGGTTAGCTTGCAATGGACTCATTGGAACACCTCCAGCTACATTAGTTGAAATCACACTTCAAGGTGATAAAGGAAAACCAAATTTCTATGATGTTAGTCTTGTTGATGGTTACAACATTCCGGTATCTGTCGTCGTCGCTAACAATAACATAAATTCGAAGTGTAACATTCAAGGTTGTTGTAAGGATGTTAAAAGTTTGTGTCCTCGTGAGCTTGAGGTTTTAAATTCTAATGGAGAAGTTGTGGCTTGCAAAAGTGCTTGTTTGGCGTTTGATCTTGACAATTTTTGTTGTAGGAATGATTATGGAAGTCCTAAGAAGTGTAGGCCAAATGTTTACTCGAAAATATTTAAGGATGCTTGTCCTAATTATTTTAGCTATGCTTTTGACACTCCTACTCCACTTGTGAGTTGTGGATCCTTAGAATATATAATCACATTTTGTCCTTATGGATGGGGTGGTGCTGCTGGTGTGCCAACAGTTGAGATTGACGGCGTAA
Protein sequence

>MS.gene56731.t1

MQLLRSITPLIFFIISAYIFHGIVEGHQATFYIHNKCPFPIWPATAPNTGQPIIAEGGFYLPSGQTKKILAPWSWSGRIWARTGCNFASNNWKPSCETGDCDGRLACNGLIGTPPATLVEITLQGDKGKPNFYDVSLVDGYNIPVSVVVANNNINSKCNIQGCCKDVKSLCPRELEVLNSNGEVVACKSACLAFDLDNFCCRNDYGSPKKCRPNVYSKIFKDACPNYFSYAFDTPTPLLRLTA