AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019285

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019285.t1 MTR_5g010635 97.925 241 5 0 1 241 1 241 7.92e-178 488
MS.gene019285.t1 MTR_8g096900 63.348 221 78 2 6 225 30 248 1.68e-102 298
MS.gene019285.t1 MTR_5g010640 54.825 228 94 1 7 225 9 236 2.41e-90 266
MS.gene019285.t1 MTR_8g096910 46.018 226 71 4 1 225 1 176 6.37e-57 179
MS.gene019285.t1 MTR_8g096920 44.690 226 71 4 1 225 1 173 1.67e-55 176
MS.gene019285.t1 MTR_5g059200 47.511 221 96 8 19 224 24 239 1.09e-54 177
MS.gene019285.t1 MTR_1g021945 43.860 228 106 7 21 228 23 248 1.06e-52 171
MS.gene019285.t1 MTR_6g079580 42.083 240 115 8 6 225 5 240 1.20e-51 168
MS.gene019285.t1 MTR_4g073720 44.856 243 111 12 1 224 1 239 1.86e-50 168
MS.gene019285.t1 MTR_3g111620 43.636 220 102 8 26 225 29 246 5.72e-50 164
MS.gene019285.t1 MTR_8g075510 41.463 246 113 10 3 230 17 249 6.90e-50 164
MS.gene019285.t1 MTR_1g025420 39.271 247 125 8 1 224 1 245 1.82e-49 163
MS.gene019285.t1 MTR_1g025420 39.271 247 125 8 1 224 1 245 4.04e-49 164
MS.gene019285.t1 MTR_8g075510 41.667 240 109 10 3 224 17 243 4.84e-48 160
MS.gene019285.t1 MTR_8g107140 38.866 247 123 9 2 225 4 245 1.21e-47 158
MS.gene019285.t1 MTR_5g022350 40.078 257 120 14 3 239 14 256 2.68e-47 159
MS.gene019285.t1 MTR_5g022310 40.081 247 118 10 7 225 7 251 3.38e-47 157
MS.gene019285.t1 MTR_5g022310 40.081 247 118 10 7 225 7 251 4.41e-47 158
MS.gene019285.t1 MTR_8g037890 40.496 242 118 9 8 225 8 247 6.41e-47 158
MS.gene019285.t1 MTR_7g102380 41.423 239 116 10 9 225 5 241 1.05e-46 155
MS.gene019285.t1 MTR_2g067980 41.532 248 117 11 1 225 5 247 1.17e-46 166
MS.gene019285.t1 MTR_8g056820 39.506 243 121 9 7 225 7 247 1.24e-46 155
MS.gene019285.t1 MTR_3g114030 39.823 226 112 7 23 225 6 230 1.30e-46 155
MS.gene019285.t1 MTR_4g073730 39.200 250 120 9 1 226 8 249 1.60e-46 156
MS.gene019285.t1 MTR_4g073730 39.200 250 120 9 1 226 8 249 2.43e-46 157
MS.gene019285.t1 MTR_8g036215 38.174 241 125 9 4 224 1 237 4.69e-46 153
MS.gene019285.t1 MTR_2g069660 38.912 239 126 6 7 225 5 243 1.19e-45 152
MS.gene019285.t1 MTR_1g062590 38.525 244 126 9 4 225 1 242 5.65e-45 151
MS.gene019285.t1 MTR_1g062630 37.945 253 131 11 4 234 1 249 5.87e-45 151
MS.gene019285.t1 MTR_8g075550 40.175 229 108 8 23 224 27 253 1.14e-43 149
MS.gene019285.t1 MTR_2g068030 40.611 229 112 9 18 224 17 243 1.19e-43 148
MS.gene019285.t1 MTR_3g068015 41.553 219 105 9 28 225 32 248 2.68e-43 147
MS.gene019285.t1 MTR_1g062340 40.708 226 105 9 24 225 22 242 3.53e-43 146
MS.gene019285.t1 MTR_7g062610 37.652 247 127 9 1 225 1 242 1.98e-42 144
MS.gene019285.t1 MTR_1g062350 40.359 223 110 8 24 225 22 242 4.84e-41 140
MS.gene019285.t1 MTR_4g063630 37.447 235 121 9 14 224 19 251 7.10e-41 140
MS.gene019285.t1 MTR_2g068655 37.991 229 118 9 21 227 28 254 8.08e-41 142
MS.gene019285.t1 MTR_1g062370 39.910 223 111 8 24 225 22 242 9.42e-41 140
MS.gene019285.t1 MTR_6g009480 36.400 250 131 10 4 227 7 254 3.46e-40 139
MS.gene019285.t1 MTR_1g062660 38.462 234 121 8 13 225 11 242 6.43e-40 138
MS.gene019285.t1 MTR_2g067990 41.905 210 102 9 23 225 26 222 1.77e-35 134
MS.gene019285.t1 MTR_1g062690 35.294 221 100 8 24 225 22 218 7.46e-29 108
MS.gene019285.t1 MTR_2g067970 34.197 193 107 9 58 233 1 190 3.87e-23 98.2
MS.gene019285.t1 MTR_5g023850 33.333 168 97 5 9 161 11 178 7.54e-23 93.2
MS.gene019285.t1 MTR_8g089020 32.370 173 81 6 57 213 1 153 1.64e-21 87.8
MS.gene019285.t1 MTR_1g062390 27.848 237 150 8 6 225 6 238 4.76e-21 89.0
MS.gene019285.t1 MTR_5g022350 41.007 139 61 7 3 130 79 207 1.82e-20 86.7
MS.gene019285.t1 MTR_2g063150 28.326 233 144 10 1 213 10 239 5.52e-18 80.9
MS.gene019285.t1 MTR_7g076360 30.964 197 85 7 21 213 5 154 7.14e-18 78.6
MS.gene019285.t1 MTR_5g068670 50.000 64 30 2 68 130 25 87 1.74e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019285.t1 AT4G11650 73.778 225 57 2 1 225 1 223 1.59e-120 343
MS.gene019285.t1 AT1G75050 44.215 242 114 6 3 225 4 243 1.37e-58 186
MS.gene019285.t1 AT1G75040 42.623 244 116 7 1 225 1 239 1.05e-56 181
MS.gene019285.t1 AT1G75030 42.041 245 120 7 1 225 1 243 4.11e-54 174
MS.gene019285.t1 AT1G77700 43.590 234 112 7 6 224 43 271 1.32e-53 176
MS.gene019285.t1 AT1G77700 43.590 234 112 7 6 224 43 271 1.68e-53 175
MS.gene019285.t1 AT4G38660 45.798 238 109 10 5 225 11 245 9.39e-53 174
MS.gene019285.t1 AT1G77700 44.495 218 101 7 22 224 87 299 1.83e-52 174
MS.gene019285.t1 AT4G38670 39.754 244 122 9 6 225 5 247 3.62e-51 168
MS.gene019285.t1 AT4G38670 39.754 244 122 9 6 225 5 247 3.62e-51 168
MS.gene019285.t1 AT5G24620 41.434 251 114 10 3 225 6 251 5.08e-51 171
MS.gene019285.t1 AT5G24620 41.434 251 114 10 3 225 61 306 8.71e-51 172
MS.gene019285.t1 AT5G24620 41.434 251 114 10 3 225 82 327 1.12e-50 172
MS.gene019285.t1 AT1G19320 40.244 246 117 10 1 224 9 246 2.72e-49 162
MS.gene019285.t1 AT4G38660 45.778 225 102 10 18 225 2 223 3.56e-49 164
MS.gene019285.t1 AT1G73620 42.222 225 107 7 21 225 39 260 1.11e-48 161
MS.gene019285.t1 AT4G38670 40.789 228 110 9 22 225 5 231 4.71e-48 159
MS.gene019285.t1 AT1G75800 40.175 229 111 7 22 225 21 248 1.42e-47 160
MS.gene019285.t1 AT1G20030 40.708 226 108 7 25 225 4 228 2.12e-47 159
MS.gene019285.t1 AT1G18250 41.778 225 108 8 21 225 19 240 2.71e-47 157
MS.gene019285.t1 AT1G20030 40.708 226 108 7 25 225 21 245 3.52e-47 159
MS.gene019285.t1 AT1G18250 41.333 225 109 8 21 225 18 239 5.54e-47 156
MS.gene019285.t1 AT2G17860 40.083 242 116 9 11 225 10 249 1.55e-46 155
MS.gene019285.t1 AT4G36010 40.167 239 113 9 22 232 21 257 2.47e-45 154
MS.gene019285.t1 AT4G36010 40.167 239 113 9 22 232 21 257 2.47e-45 154
MS.gene019285.t1 AT4G24180 37.984 258 116 11 1 225 10 256 2.67e-43 147
MS.gene019285.t1 AT4G24180 37.984 258 116 11 1 225 10 256 1.28e-42 147
MS.gene019285.t1 AT4G24180 38.400 250 109 12 9 225 14 251 3.82e-42 144
MS.gene019285.t1 AT4G24180 38.400 250 109 12 9 225 14 251 1.14e-41 144
MS.gene019285.t1 AT5G38280 34.630 257 141 8 7 238 9 263 4.71e-40 146
MS.gene019285.t1 AT5G38280 34.630 257 141 8 7 238 9 263 5.98e-40 145
MS.gene019285.t1 AT5G02140 37.131 237 127 9 10 225 6 241 1.37e-37 133
MS.gene019285.t1 AT5G02140 37.131 237 127 9 10 225 6 241 1.96e-37 131
MS.gene019285.t1 AT1G70250 34.956 226 118 8 25 225 146 367 7.54e-37 137
MS.gene019285.t1 AT4G24180 36.777 242 110 10 1 209 10 241 7.66e-37 132
MS.gene019285.t1 AT5G40020 30.830 253 135 9 2 225 7 248 1.57e-36 129
MS.gene019285.t1 AT2G28790 35.146 239 127 10 13 224 11 248 5.75e-36 128
MS.gene019285.t1 AT2G28790 35.146 239 127 10 13 224 36 273 6.45e-36 128
MS.gene019285.t1 AT4G24180 37.179 234 103 11 9 209 14 236 8.98e-36 129
MS.gene019285.t1 AT4G36000 45.714 140 68 5 92 225 1 138 2.26e-33 120
MS.gene019285.t1 AT4G36000 45.714 140 68 5 92 225 1 138 2.26e-33 120
MS.gene019285.t1 AT4G18253 30.833 240 137 9 7 225 7 238 1.61e-24 98.2
MS.gene019285.t1 AT4G18250 31.301 246 151 8 1 230 34 277 1.09e-22 96.7
MS.gene019285.t1 AT5G24620 42.623 122 50 5 122 225 15 134 9.68e-20 86.3

Find 86 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGAGTCCTCAATTCTTT+AGG 0.199273 5.4:+4878481 None:intergenic
TACCGCCATGGCTCGTATTT+GGG 0.216063 5.4:-4878755 MS.gene019285:CDS
ATGGATTTCTTCCCTCTTAA+TGG 0.218122 5.4:-4878550 MS.gene019285:CDS
GTACCGCCATGGCTCGTATT+TGG 0.222625 5.4:-4878756 MS.gene019285:CDS
CTTGAGTCCTCAATTCTTTA+GGG 0.229087 5.4:+4878482 None:intergenic
AAGGAGTGAGGGTGAGTAGT+AGG 0.288125 5.4:+4878899 None:intergenic
TCGAGGCGGCGACCACCGCC+TGG 0.296708 5.4:+4878814 None:intergenic
AGAAATCTTGATTTCCGAAT+TGG 0.317167 5.4:+4878608 None:intergenic
ACAATTGCCCTTACACCGTT+TGG 0.330621 5.4:-4878849 MS.gene019285:CDS
AATGAATATTGTTGCACTAA+TGG 0.346009 5.4:-4878424 MS.gene019285:CDS
GCGGTCAAACATGGAACCTT+TGG 0.359178 5.4:-4878789 MS.gene019285:CDS
GCAGCTGCCCAAACGGTGTA+AGG 0.366048 5.4:+4878841 None:intergenic
GAATTGGTTTAACGCATATT+CGG 0.379434 5.4:+4878624 None:intergenic
GGTCGTGGCCGTTGCCAAAC+AGG 0.379579 5.4:-4878703 MS.gene019285:CDS
AACTTTGATGGCAGCGGTCG+TGG 0.386076 5.4:-4878718 MS.gene019285:CDS
TACACACTGGTCTGGTTTAG+TGG 0.389430 5.4:+4878238 None:intergenic
TGGACTCCAATGTACTGGTT+GGG 0.393400 5.4:-4878668 MS.gene019285:CDS
CGCACCGGTTGCAACTTTGA+TGG 0.400828 5.4:-4878730 MS.gene019285:CDS
GCATATTCGGCTAATGTGTT+TGG 0.402845 5.4:+4878637 None:intergenic
AGGGCACTGTCCGTTAATAT+CGG 0.417931 5.4:+4878501 None:intergenic
CGGTCAAACATGGAACCTTT+GGG 0.420739 5.4:-4878788 MS.gene019285:CDS
ATTAGTGCAACAATATTCAT+TGG 0.423057 5.4:+4878426 None:intergenic
AGTTGCACTGCCGATATTAA+CGG 0.432233 5.4:-4878511 MS.gene019285:CDS
CACCGGTGCAATCACCTGTT+TGG 0.438754 5.4:+4878689 None:intergenic
TGGGCTAGCAGCTGCCCAAA+CGG 0.440365 5.4:+4878834 None:intergenic
CAATTGCCCTTACACCGTTT+GGG 0.441211 5.4:-4878848 MS.gene019285:CDS
CATTTCAATACACACTGGTC+TGG 0.444048 5.4:+4878230 None:intergenic
AGTACTTTCACTTGTCCTGC+TGG 0.444797 5.4:-4878313 MS.gene019285:CDS
TTGTGGCATCCACCATTAAG+AGG 0.446706 5.4:+4878538 None:intergenic
TCCATGTTTGACCGCGGTCG+AGG 0.458130 5.4:+4878797 None:intergenic
AGGAGTGAGGGTGAGTAGTA+GGG 0.465064 5.4:+4878900 None:intergenic
GAATATGCGTTAAACCAATT+CGG 0.474473 5.4:-4878622 MS.gene019285:CDS
TATTCGGCTAATGTGTTTGG+TGG 0.475364 5.4:+4878640 None:intergenic
AAGTGGGTCCACAGCTTCCT+TGG 0.484930 5.4:+4878401 None:intergenic
TACTTGTTGGATCATCTTGA+GGG 0.496803 5.4:+4878332 None:intergenic
TGGAACCTTTGGGTTAATCC+TGG 0.501345 5.4:-4878778 MS.gene019285:CDS
GCTGCCATCAAAGTTGCAAC+CGG 0.505235 5.4:+4878726 None:intergenic
ATTGTTGACGATCTCGAAGT+TGG 0.505827 5.4:+4878867 None:intergenic
ATACGAGCCATGGCGGTACC+AGG 0.507450 5.4:+4878760 None:intergenic
GCAGCTGCTAGCCCAGGCGG+TGG 0.514788 5.4:-4878826 MS.gene019285:CDS
GTTTGGGCAGCTGCTAGCCC+AGG 0.516906 5.4:-4878832 MS.gene019285:CDS
TGCAATCACCTGTTTGGCAA+CGG 0.520534 5.4:+4878695 None:intergenic
GCCTCGACCGCGGTCAAACA+TGG 0.523542 5.4:-4878798 MS.gene019285:CDS
CGATGGTTTCAACATCCCAA+TGG 0.524206 5.4:-4878569 MS.gene019285:CDS
GTGGACTCCAATGTACTGGT+TGG 0.524692 5.4:-4878669 MS.gene019285:CDS
TACGACATCTCACTTGTCGA+TGG 0.528359 5.4:-4878586 MS.gene019285:CDS
GGACAAGTGAAAGTACTTGT+TGG 0.531593 5.4:+4878319 None:intergenic
GATTTCTTCCCTCTTAATGG+TGG 0.535456 5.4:-4878547 MS.gene019285:CDS
GTACTTGTTGGATCATCTTG+AGG 0.536813 5.4:+4878331 None:intergenic
GCTCGTATTTGGGGTCGCAC+CGG 0.540712 5.4:-4878745 MS.gene019285:CDS
TCGAAGTTGGCTGCTTGTGA+AGG 0.545014 5.4:+4878880 None:intergenic
GTGGACCCACTTATTTCTCA+AGG 0.546200 5.4:-4878390 MS.gene019285:CDS
TTAAGAGGGAAGAAATCCAT+TGG 0.547257 5.4:+4878553 None:intergenic
GGACTCCAATGTACTGGTTG+GGG 0.549101 5.4:-4878667 MS.gene019285:CDS
TTTAGTGGCATCTCAATATG+AGG 0.552341 5.4:+4878253 None:intergenic
GGTTAATCCTGGTACCGCCA+TGG 0.552350 5.4:-4878767 MS.gene019285:CDS
GGTTGCAACTTTGATGGCAG+CGG 0.554541 5.4:-4878724 MS.gene019285:CDS
TAAGAGGGAAGAAATCCATT+GGG 0.555277 5.4:+4878554 None:intergenic
CGAGGCGGCGACCACCGCCT+GGG 0.558748 5.4:+4878815 None:intergenic
ACCGGTGGACTCCAATGTAC+TGG 0.567872 5.4:-4878673 MS.gene019285:CDS
GGGAGCATAGTGTGAATGTG+AGG 0.572658 5.4:+4878920 None:intergenic
TATTGTTGCACTAATGGCCA+AGG 0.575870 5.4:-4878418 MS.gene019285:CDS
CAGCTGCCCAAACGGTGTAA+GGG 0.577110 5.4:+4878842 None:intergenic
GGACACCCCAACCAGTACAT+TGG 0.577383 5.4:+4878662 None:intergenic
ACCGCCATGGCTCGTATTTG+GGG 0.579247 5.4:-4878754 MS.gene019285:CDS
CCTAAAGAATTGAGGACTCA+AGG 0.579944 5.4:-4878481 MS.gene019285:CDS
GACAGTGCCCTAAAGAATTG+AGG 0.582616 5.4:-4878489 MS.gene019285:CDS
TGCCAAACAGGTGATTGCAC+CGG 0.588418 5.4:-4878691 MS.gene019285:CDS
ATTCGGCTAATGTGTTTGGT+GGG 0.589352 5.4:+4878641 None:intergenic
TGGGCAGCTGCTAGCCCAGG+CGG 0.593879 5.4:-4878829 MS.gene019285:CDS
GCGACCCCAAATACGAGCCA+TGG 0.594263 5.4:+4878750 None:intergenic
ACCAGTACATTGGAGTCCAC+CGG 0.599388 5.4:+4878672 None:intergenic
GGTGGTCGCCGCCTCGACCG+CGG 0.599782 5.4:-4878808 MS.gene019285:CDS
TGTGGCATCCACCATTAAGA+GGG 0.600994 5.4:+4878539 None:intergenic
ATGTTTGACCGCGGTCGAGG+CGG 0.603815 5.4:+4878800 None:intergenic
TGGCTGCTTGTGAAGGAGTG+AGG 0.609598 5.4:+4878887 None:intergenic
GGCTGCTTGTGAAGGAGTGA+GGG 0.609799 5.4:+4878888 None:intergenic
ACTTTGTAGTTAGATCCAGC+AGG 0.625794 5.4:+4878298 None:intergenic
CAAACAGGTGATTGCACCGG+TGG 0.628067 5.4:-4878688 MS.gene019285:CDS
CGGTACCAGGATTAACCCAA+AGG 0.646462 5.4:+4878773 None:intergenic
ACTAATGGCCAAGGAAGCTG+TGG 0.677244 5.4:-4878409 MS.gene019285:CDS
ATACACATTTCAATACACAC+TGG 0.687621 5.4:+4878225 None:intergenic
ACCCCAAATACGAGCCATGG+CGG 0.699584 5.4:+4878753 None:intergenic
AAAGGTTCCATGTTTGACCG+CGG 0.701678 5.4:+4878791 None:intergenic
TCAATATGAGGAGCTCCAAG+AGG 0.715579 5.4:+4878265 None:intergenic
AAAGAATTGAGGACTCAAGG+TGG 0.728458 5.4:-4878478 MS.gene019285:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTCTCAAGGTTTTTTA+AGG - chr5.4:4878791-4878810 MS.gene019285:CDS 20.0%
! AAAAAACCTTGAGAAATAAG+TGG + chr5.4:4878790-4878809 None:intergenic 25.0%
! AAAAACCTTGAGAAATAAGT+GGG + chr5.4:4878789-4878808 None:intergenic 25.0%
! AATGAATATTGTTGCACTAA+TGG - chr5.4:4878747-4878766 MS.gene019285:CDS 25.0%
! ATTAGTGCAACAATATTCAT+TGG + chr5.4:4878748-4878767 None:intergenic 25.0%
AGAAATCTTGATTTCCGAAT+TGG + chr5.4:4878566-4878585 None:intergenic 30.0%
GAATATGCGTTAAACCAATT+CGG - chr5.4:4878549-4878568 MS.gene019285:CDS 30.0%
! GAATTGGTTTAACGCATATT+CGG + chr5.4:4878550-4878569 None:intergenic 30.0%
! TGGTCTTAAAAACTGTACAA+GGG + chr5.4:4878728-4878747 None:intergenic 30.0%
!! TTGGTCTTAAAAACTGTACA+AGG + chr5.4:4878729-4878748 None:intergenic 30.0%
!!! TCTCAAGGTTTTTTAAGGAT+AGG - chr5.4:4878796-4878815 MS.gene019285:CDS 30.0%
ATGGATTTCTTCCCTCTTAA+TGG - chr5.4:4878621-4878640 MS.gene019285:CDS 35.0%
CTTGAGTCCTCAATTCTTTA+GGG + chr5.4:4878692-4878711 None:intergenic 35.0%
TAAGAGGGAAGAAATCCATT+GGG + chr5.4:4878620-4878639 None:intergenic 35.0%
TTAAGAGGGAAGAAATCCAT+TGG + chr5.4:4878621-4878640 None:intergenic 35.0%
TTTAGTGGCATCTCAATATG+AGG + chr5.4:4878921-4878940 None:intergenic 35.0%
! TACTTGTTGGATCATCTTGA+GGG + chr5.4:4878842-4878861 None:intergenic 35.0%
!! AAAGTTGTTTTCTGTCCTCT+TGG - chr5.4:4878891-4878910 MS.gene019285:CDS 35.0%
AAAGAATTGAGGACTCAAGG+TGG - chr5.4:4878693-4878712 MS.gene019285:CDS 40.0%
ACTTTGTAGTTAGATCCAGC+AGG + chr5.4:4878876-4878895 None:intergenic 40.0%
AGTTGCACTGCCGATATTAA+CGG - chr5.4:4878660-4878679 MS.gene019285:CDS 40.0%
ATTCGGCTAATGTGTTTGGT+GGG + chr5.4:4878533-4878552 None:intergenic 40.0%
ATTGTTGACGATCTCGAAGT+TGG + chr5.4:4878307-4878326 None:intergenic 40.0%
CCTAAAGAATTGAGGACTCA+AGG - chr5.4:4878690-4878709 MS.gene019285:CDS 40.0%
CCTTGAGTCCTCAATTCTTT+AGG + chr5.4:4878693-4878712 None:intergenic 40.0%
GATTTCTTCCCTCTTAATGG+TGG - chr5.4:4878624-4878643 MS.gene019285:CDS 40.0%
GCATATTCGGCTAATGTGTT+TGG + chr5.4:4878537-4878556 None:intergenic 40.0%
TATTCGGCTAATGTGTTTGG+TGG + chr5.4:4878534-4878553 None:intergenic 40.0%
TATTGTTGCACTAATGGCCA+AGG - chr5.4:4878753-4878772 MS.gene019285:CDS 40.0%
! GTACTTGTTGGATCATCTTG+AGG + chr5.4:4878843-4878862 None:intergenic 40.0%
!! GGACAAGTGAAAGTACTTGT+TGG + chr5.4:4878855-4878874 None:intergenic 40.0%
AAAGGTTCCATGTTTGACCG+CGG + chr5.4:4878383-4878402 None:intergenic 45.0%
ACAATTGCCCTTACACCGTT+TGG - chr5.4:4878322-4878341 MS.gene019285:CDS 45.0%
AGTACTTTCACTTGTCCTGC+TGG - chr5.4:4878858-4878877 MS.gene019285:CDS 45.0%
CAATTGCCCTTACACCGTTT+GGG - chr5.4:4878323-4878342 MS.gene019285:CDS 45.0%
CGATGGTTTCAACATCCCAA+TGG - chr5.4:4878602-4878621 MS.gene019285:CDS 45.0%
CGGTCAAACATGGAACCTTT+GGG - chr5.4:4878383-4878402 MS.gene019285:CDS 45.0%
GACAGTGCCCTAAAGAATTG+AGG - chr5.4:4878682-4878701 MS.gene019285:CDS 45.0%
TACGACATCTCACTTGTCGA+TGG - chr5.4:4878585-4878604 MS.gene019285:CDS 45.0%
TCAATATGAGGAGCTCCAAG+AGG + chr5.4:4878909-4878928 None:intergenic 45.0%
TGCAATCACCTGTTTGGCAA+CGG + chr5.4:4878479-4878498 None:intergenic 45.0%
TGTGGCATCCACCATTAAGA+GGG + chr5.4:4878635-4878654 None:intergenic 45.0%
TTGTGGCATCCACCATTAAG+AGG + chr5.4:4878636-4878655 None:intergenic 45.0%
! GTGGACCCACTTATTTCTCA+AGG - chr5.4:4878781-4878800 MS.gene019285:CDS 45.0%
! TACACACTGGTCTGGTTTAG+TGG + chr5.4:4878936-4878955 None:intergenic 45.0%
! TGGAACCTTTGGGTTAATCC+TGG - chr5.4:4878393-4878412 MS.gene019285:CDS 45.0%
!! AGGGCACTGTCCGTTAATAT+CGG + chr5.4:4878673-4878692 None:intergenic 45.0%
!! TGGACTCCAATGTACTGGTT+GGG - chr5.4:4878503-4878522 MS.gene019285:CDS 45.0%
AAGGAGTGAGGGTGAGTAGT+AGG + chr5.4:4878275-4878294 None:intergenic 50.0%
ACCAGTACATTGGAGTCCAC+CGG + chr5.4:4878502-4878521 None:intergenic 50.0%
ACTAATGGCCAAGGAAGCTG+TGG - chr5.4:4878762-4878781 MS.gene019285:CDS 50.0%
AGGAGTGAGGGTGAGTAGTA+GGG + chr5.4:4878274-4878293 None:intergenic 50.0%
CGGTACCAGGATTAACCCAA+AGG + chr5.4:4878401-4878420 None:intergenic 50.0%
GCGGTCAAACATGGAACCTT+TGG - chr5.4:4878382-4878401 MS.gene019285:CDS 50.0%
GCTGCCATCAAAGTTGCAAC+CGG + chr5.4:4878448-4878467 None:intergenic 50.0%
TACCGCCATGGCTCGTATTT+GGG - chr5.4:4878416-4878435 MS.gene019285:CDS 50.0%
TCGAAGTTGGCTGCTTGTGA+AGG + chr5.4:4878294-4878313 None:intergenic 50.0%
TGCCAAACAGGTGATTGCAC+CGG - chr5.4:4878480-4878499 MS.gene019285:CDS 50.0%
! GGGAGCATAGTGTGAATGTG+AGG + chr5.4:4878254-4878273 None:intergenic 50.0%
! GGTTGCAACTTTGATGGCAG+CGG - chr5.4:4878447-4878466 MS.gene019285:CDS 50.0%
! GTGGACTCCAATGTACTGGT+TGG - chr5.4:4878502-4878521 MS.gene019285:CDS 50.0%
!! CGGCAGTGCAACTGATTTTG+TGG + chr5.4:4878653-4878672 None:intergenic 50.0%
!! GGACTCCAATGTACTGGTTG+GGG - chr5.4:4878504-4878523 MS.gene019285:CDS 50.0%
AAGTGGGTCCACAGCTTCCT+TGG + chr5.4:4878773-4878792 None:intergenic 55.0%
ACCCCAAATACGAGCCATGG+CGG + chr5.4:4878421-4878440 None:intergenic 55.0%
ACCGCCATGGCTCGTATTTG+GGG - chr5.4:4878417-4878436 MS.gene019285:CDS 55.0%
CAAACAGGTGATTGCACCGG+TGG - chr5.4:4878483-4878502 MS.gene019285:CDS 55.0%
CACCGGTGCAATCACCTGTT+TGG + chr5.4:4878485-4878504 None:intergenic 55.0%
CAGCTGCCCAAACGGTGTAA+GGG + chr5.4:4878332-4878351 None:intergenic 55.0%
GGACACCCCAACCAGTACAT+TGG + chr5.4:4878512-4878531 None:intergenic 55.0%
GGCTGCTTGTGAAGGAGTGA+GGG + chr5.4:4878286-4878305 None:intergenic 55.0%
GGTTAATCCTGGTACCGCCA+TGG - chr5.4:4878404-4878423 MS.gene019285:CDS 55.0%
GTACCGCCATGGCTCGTATT+TGG - chr5.4:4878415-4878434 MS.gene019285:CDS 55.0%
TGGCTGCTTGTGAAGGAGTG+AGG + chr5.4:4878287-4878306 None:intergenic 55.0%
! AACTTTGATGGCAGCGGTCG+TGG - chr5.4:4878453-4878472 MS.gene019285:CDS 55.0%
! ACCGGTGGACTCCAATGTAC+TGG - chr5.4:4878498-4878517 MS.gene019285:CDS 55.0%
!! CGCACCGGTTGCAACTTTGA+TGG - chr5.4:4878441-4878460 MS.gene019285:CDS 55.0%
ATACGAGCCATGGCGGTACC+AGG + chr5.4:4878414-4878433 None:intergenic 60.0%
ATGTTTGACCGCGGTCGAGG+CGG + chr5.4:4878374-4878393 None:intergenic 60.0%
GCAGCTGCCCAAACGGTGTA+AGG + chr5.4:4878333-4878352 None:intergenic 60.0%
GCGACCCCAAATACGAGCCA+TGG + chr5.4:4878424-4878443 None:intergenic 60.0%
TCCATGTTTGACCGCGGTCG+AGG + chr5.4:4878377-4878396 None:intergenic 60.0%
! GCTCGTATTTGGGGTCGCAC+CGG - chr5.4:4878426-4878445 MS.gene019285:CDS 60.0%
!! TGGGCTAGCAGCTGCCCAAA+CGG + chr5.4:4878340-4878359 None:intergenic 60.0%
GCCTCGACCGCGGTCAAACA+TGG - chr5.4:4878373-4878392 MS.gene019285:CDS 65.0%
GGTCGTGGCCGTTGCCAAAC+AGG - chr5.4:4878468-4878487 MS.gene019285:CDS 65.0%
GTTTGGGCAGCTGCTAGCCC+AGG - chr5.4:4878339-4878358 MS.gene019285:CDS 65.0%
TGGGCAGCTGCTAGCCCAGG+CGG - chr5.4:4878342-4878361 MS.gene019285:CDS 70.0%
GCAGCTGCTAGCCCAGGCGG+TGG - chr5.4:4878345-4878364 MS.gene019285:CDS 75.0%
! CGAGGCGGCGACCACCGCCT+GGG + chr5.4:4878359-4878378 None:intergenic 80.0%
! GGTGGTCGCCGCCTCGACCG+CGG - chr5.4:4878363-4878382 MS.gene019285:CDS 80.0%
! TCGAGGCGGCGACCACCGCC+TGG + chr5.4:4878360-4878379 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 4878234 4878959 4878234 ID=MS.gene019285
chr5.4 mRNA 4878234 4878959 4878234 ID=MS.gene019285.t1;Parent=MS.gene019285
chr5.4 exon 4878234 4878959 4878234 ID=MS.gene019285.t1.exon1;Parent=MS.gene019285.t1
chr5.4 CDS 4878234 4878959 4878234 ID=cds.MS.gene019285.t1;Parent=MS.gene019285.t1
Gene Sequence

>MS.gene019285

ATGACTTTCATATCAATCCTCACATTCACACTATGCTCCCTACTACTCACCCTCACTCCTTCACAAGCAGCCAACTTCGAGATCGTCAACAATTGCCCTTACACCGTTTGGGCAGCTGCTAGCCCAGGCGGTGGTCGCCGCCTCGACCGCGGTCAAACATGGAACCTTTGGGTTAATCCTGGTACCGCCATGGCTCGTATTTGGGGTCGCACCGGTTGCAACTTTGATGGCAGCGGTCGTGGCCGTTGCCAAACAGGTGATTGCACCGGTGGACTCCAATGTACTGGTTGGGGTGTCCCACCAAACACATTAGCCGAATATGCGTTAAACCAATTCGGAAATCAAGATTTCTACGACATCTCACTTGTCGATGGTTTCAACATCCCAATGGATTTCTTCCCTCTTAATGGTGGATGCCACAAAATCAGTTGCACTGCCGATATTAACGGACAGTGCCCTAAAGAATTGAGGACTCAAGGTGGTTGTAACAACCCTTGTACAGTTTTTAAGACCAATGAATATTGTTGCACTAATGGCCAAGGAAGCTGTGGACCCACTTATTTCTCAAGGTTTTTTAAGGATAGGTGTCATGATTCATACAGTTACCCTCAAGATGATCCAACAAGTACTTTCACTTGTCCTGCTGGATCTAACTACAAAGTTGTTTTCTGTCCTCTTGGAGCTCCTCATATTGAGATGCCACTAAACCAGACCAGTGTGTATTGA
Protein sequence

>MS.gene019285.t1

MTFISILTFTLCSLLLTLTPSQAANFEIVNNCPYTVWAAASPGGGRRLDRGQTWNLWVNPGTAMARIWGRTGCNFDGSGRGRCQTGDCTGGLQCTGWGVPPNTLAEYALNQFGNQDFYDISLVDGFNIPMDFFPLNGGCHKISCTADINGQCPKELRTQGGCNNPCTVFKTNEYCCTNGQGSCGPTYFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFCPLGAPHIEMPLNQTSVY