AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021099

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021099.t1 MTR_4g063630 96.825 252 8 0 1 252 1 252 0.0 498
MS.gene021099.t1 MTR_1g062590 44.939 247 127 6 7 251 2 241 4.95e-66 205
MS.gene021099.t1 MTR_1g062630 46.154 247 124 6 7 251 2 241 6.61e-66 206
MS.gene021099.t1 MTR_4g073720 45.749 247 117 9 12 251 3 239 1.82e-63 202
MS.gene021099.t1 MTR_1g062340 43.882 237 126 5 17 251 10 241 3.30e-63 198
MS.gene021099.t1 MTR_8g107140 43.775 249 132 6 5 251 2 244 2.09e-62 196
MS.gene021099.t1 MTR_1g062350 42.683 246 134 5 8 251 1 241 2.99e-62 196
MS.gene021099.t1 MTR_1g062660 42.276 246 135 5 8 251 1 241 5.93e-62 195
MS.gene021099.t1 MTR_1g062370 42.276 246 135 5 8 251 1 241 7.37e-62 194
MS.gene021099.t1 MTR_1g025420 43.496 246 129 8 12 251 4 245 8.95e-62 195
MS.gene021099.t1 MTR_1g025420 45.333 225 115 7 31 251 25 245 1.01e-61 197
MS.gene021099.t1 MTR_6g079580 43.802 242 128 7 12 251 4 239 1.02e-61 194
MS.gene021099.t1 MTR_8g036215 41.841 239 128 6 16 251 7 237 1.27e-61 194
MS.gene021099.t1 MTR_7g102380 41.803 244 135 5 10 251 2 240 2.31e-61 193
MS.gene021099.t1 MTR_6g009480 44.262 244 127 7 12 251 13 251 1.27e-59 190
MS.gene021099.t1 MTR_8g075550 45.175 228 114 7 31 251 30 253 3.64e-59 190
MS.gene021099.t1 MTR_3g114030 44.889 225 116 7 31 251 9 229 4.71e-59 187
MS.gene021099.t1 MTR_8g037890 42.248 258 130 10 1 251 1 246 5.69e-59 189
MS.gene021099.t1 MTR_5g059200 43.388 242 119 9 13 251 13 239 7.75e-58 186
MS.gene021099.t1 MTR_4g073730 40.329 243 139 6 12 251 8 247 1.48e-57 185
MS.gene021099.t1 MTR_4g073730 40.329 243 139 6 12 251 8 247 3.13e-57 185
MS.gene021099.t1 MTR_3g068015 38.492 252 142 5 8 251 1 247 1.28e-56 181
MS.gene021099.t1 MTR_8g056820 41.016 256 133 10 3 251 2 246 5.04e-56 180
MS.gene021099.t1 MTR_5g022350 45.740 223 106 8 31 251 33 242 6.38e-56 182
MS.gene021099.t1 MTR_5g022310 40.927 259 136 10 1 251 1 250 4.17e-55 177
MS.gene021099.t1 MTR_1g021945 44.828 232 112 9 26 251 23 244 5.59e-55 177
MS.gene021099.t1 MTR_5g022310 40.927 259 136 10 1 251 1 250 9.91e-55 178
MS.gene021099.t1 MTR_7g062610 37.805 246 146 5 7 251 2 241 2.34e-54 175
MS.gene021099.t1 MTR_8g075510 41.736 242 123 8 12 251 18 243 3.06e-54 175
MS.gene021099.t1 MTR_2g069660 41.631 233 128 6 22 251 15 242 3.12e-54 175
MS.gene021099.t1 MTR_8g075510 41.736 242 123 8 12 251 18 243 7.29e-54 176
MS.gene021099.t1 MTR_3g111620 41.048 229 125 7 26 251 24 245 1.53e-52 171
MS.gene021099.t1 MTR_1g062690 37.143 245 125 4 8 251 1 217 1.22e-49 162
MS.gene021099.t1 MTR_2g068030 41.410 227 121 8 31 252 25 244 9.51e-49 161
MS.gene021099.t1 MTR_2g068655 39.827 231 127 8 26 251 28 251 4.87e-47 159
MS.gene021099.t1 MTR_2g067980 41.004 239 127 8 20 251 15 246 6.00e-47 167
MS.gene021099.t1 MTR_5g010635 37.991 229 116 10 25 251 20 224 1.11e-38 135
MS.gene021099.t1 MTR_8g096900 33.607 244 132 9 13 251 29 247 6.62e-37 130
MS.gene021099.t1 MTR_2g063150 34.728 239 139 8 6 233 2 234 3.03e-36 129
MS.gene021099.t1 MTR_5g010640 34.263 251 138 9 8 251 5 235 3.37e-36 128
MS.gene021099.t1 MTR_8g089020 45.038 131 65 3 111 241 31 154 2.36e-33 119
MS.gene021099.t1 MTR_5g023850 37.245 196 107 9 1 189 1 187 3.15e-31 115
MS.gene021099.t1 MTR_1g062390 32.422 256 142 11 8 251 1 237 3.91e-31 115
MS.gene021099.t1 MTR_2g067990 38.326 227 100 13 31 251 29 221 2.95e-30 119
MS.gene021099.t1 MTR_5g022350 48.855 131 59 5 31 159 98 222 1.61e-29 110
MS.gene021099.t1 MTR_2g067970 37.297 185 102 8 74 251 4 181 1.34e-28 114
MS.gene021099.t1 MTR_7g076360 29.956 227 90 6 22 246 1 160 6.77e-25 97.4
MS.gene021099.t1 MTR_8g096910 40.288 139 71 5 7 144 2 129 1.03e-22 91.7
MS.gene021099.t1 MTR_8g096920 35.152 165 92 7 11 174 2 152 1.05e-19 84.0
MS.gene021099.t1 MTR_1g062640 42.742 124 61 4 49 170 32 147 2.71e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021099.t1 AT2G28790 65.984 244 77 3 13 252 33 274 7.97e-114 328
MS.gene021099.t1 AT2G28790 65.984 244 77 3 13 252 8 249 9.85e-114 327
MS.gene021099.t1 AT4G38660 43.083 253 132 6 1 251 2 244 6.64e-63 201
MS.gene021099.t1 AT5G40020 42.126 254 137 6 1 251 1 247 4.87e-62 196
MS.gene021099.t1 AT1G73620 45.815 227 116 5 26 251 39 259 3.29e-61 194
MS.gene021099.t1 AT4G38660 44.397 232 117 6 22 251 1 222 8.43e-61 194
MS.gene021099.t1 AT1G18250 44.934 227 118 5 26 251 19 239 2.08e-59 188
MS.gene021099.t1 AT1G20030 45.575 226 115 7 31 251 5 227 2.34e-59 190
MS.gene021099.t1 AT1G20030 45.575 226 115 7 31 251 22 244 3.31e-59 190
MS.gene021099.t1 AT1G77700 43.333 240 118 9 17 251 45 271 4.08e-59 190
MS.gene021099.t1 AT1G18250 44.541 229 120 5 24 251 16 238 4.36e-59 187
MS.gene021099.t1 AT1G75040 43.902 246 122 10 10 251 5 238 6.44e-59 187
MS.gene021099.t1 AT1G75800 44.813 241 124 8 17 251 10 247 6.71e-59 190
MS.gene021099.t1 AT1G77700 43.333 240 118 9 17 251 45 271 6.93e-59 190
MS.gene021099.t1 AT5G24620 41.393 244 135 6 14 251 9 250 9.06e-59 192
MS.gene021099.t1 AT1G19320 41.767 249 131 7 9 251 6 246 2.64e-58 186
MS.gene021099.t1 AT5G24620 41.393 244 135 6 14 251 85 326 3.76e-58 192
MS.gene021099.t1 AT5G24620 41.393 244 135 6 14 251 64 305 3.91e-58 192
MS.gene021099.t1 AT2G17860 40.650 246 135 7 14 251 6 248 7.25e-58 185
MS.gene021099.t1 AT1G75030 42.387 243 134 6 10 251 5 242 5.38e-57 182
MS.gene021099.t1 AT1G77700 44.000 225 112 8 28 251 88 299 1.03e-56 185
MS.gene021099.t1 AT4G38670 38.554 249 144 7 8 251 2 246 2.95e-56 181
MS.gene021099.t1 AT4G38670 38.554 249 144 7 8 251 2 246 2.95e-56 181
MS.gene021099.t1 AT1G75050 43.673 245 128 9 10 251 5 242 7.90e-56 179
MS.gene021099.t1 AT4G36010 42.424 231 117 8 31 251 25 249 5.90e-55 179
MS.gene021099.t1 AT4G36010 42.424 231 117 8 31 251 25 249 5.90e-55 179
MS.gene021099.t1 AT4G24180 41.200 250 124 9 12 251 14 250 1.55e-54 176
MS.gene021099.t1 AT4G24180 41.200 250 124 9 12 251 14 250 3.28e-54 177
MS.gene021099.t1 AT4G38670 40.000 230 129 7 27 251 5 230 7.75e-54 175
MS.gene021099.t1 AT4G24180 41.700 247 122 8 12 248 14 248 1.02e-53 176
MS.gene021099.t1 AT4G24180 40.476 252 128 9 12 251 14 255 1.91e-53 174
MS.gene021099.t1 AT4G24180 40.476 252 128 9 12 251 14 255 4.31e-53 174
MS.gene021099.t1 AT4G24180 40.964 249 126 8 12 248 14 253 1.33e-52 173
MS.gene021099.t1 AT5G02140 39.241 237 137 5 17 251 9 240 2.21e-51 168
MS.gene021099.t1 AT5G02140 39.241 237 137 5 17 251 9 240 3.80e-51 169
MS.gene021099.t1 AT5G38280 37.143 245 142 8 12 251 12 249 1.06e-42 154
MS.gene021099.t1 AT5G38280 37.143 245 142 8 12 251 12 249 1.12e-42 154
MS.gene021099.t1 AT4G11650 35.102 245 130 12 11 251 3 222 1.83e-37 132
MS.gene021099.t1 AT4G18253 34.711 242 142 6 12 251 10 237 1.19e-35 127
MS.gene021099.t1 AT4G36000 41.611 149 74 5 104 251 1 137 2.24e-34 123
MS.gene021099.t1 AT4G36000 41.611 149 74 5 104 251 1 137 2.24e-34 123
MS.gene021099.t1 AT4G18250 36.626 243 138 9 12 251 42 271 1.58e-33 128
MS.gene021099.t1 AT1G70250 33.333 228 137 9 31 251 147 366 1.23e-28 114
MS.gene021099.t1 AT5G24620 44.167 120 62 3 136 251 15 133 3.27e-24 99.0
MS.gene021099.t1 AT2G24810 46.575 73 38 1 179 251 121 192 5.41e-15 71.6

Find 96 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTACAAAAGTGAATATT+AGG 0.171798 4.3:-40137017 None:intergenic
AAGTTTGTGGGTTGTTAAAA+TGG 0.224217 4.3:-40137539 None:intergenic
CGGCCGGCCCAGTGGGTGTC+TGG 0.228338 4.3:-40137147 None:intergenic
GGCTTGAGAGGGTGAGAATA+TGG 0.325859 4.3:-40136995 None:intergenic
GGTGGTGGAGCAGCCGGTTC+TGG 0.335053 4.3:-40137178 None:intergenic
TTCTTCACCGGGTGAACTTA+AGG 0.359396 4.3:+40137653 MS.gene021099:CDS
GTTTACAAAAGTGAATATTA+GGG 0.373284 4.3:-40137016 None:intergenic
TTCCCGTCCCAGACACCCAC+TGG 0.378709 4.3:+40137139 MS.gene021099:CDS
CCCACTGGGCCGGCCGTGCA+TGG 0.379602 4.3:+40137154 MS.gene021099:CDS
TGAGCAAACGTGAACGTTGC+AGG 0.391907 4.3:-40137603 None:intergenic
AATGAGAAGTGAGTTGGTTA+AGG 0.393117 4.3:-40136953 None:intergenic
GGCCGTGCATGGGCCAGAAC+CGG 0.396060 4.3:+40137165 MS.gene021099:CDS
GGAACACGGTGCTGCAAAAC+AGG 0.402377 4.3:-40137441 None:intergenic
GATGTACGTCGAACTGTACT+AGG 0.403471 4.3:-40137281 None:intergenic
GCCCAGTGGGTGTCTGGGAC+GGG 0.404695 4.3:-40137141 None:intergenic
TCGAACTGTACTAGGGTTGC+AGG 0.406854 4.3:-40137273 None:intergenic
GGAGAATTTGTTGTTGGTGG+TGG 0.409407 4.3:-40137193 None:intergenic
GGCCCAGTGGGTGTCTGGGA+CGG 0.412521 4.3:-40137142 None:intergenic
ACAGTGATGAACATTGTTGT+AGG 0.414434 4.3:+40137514 MS.gene021099:CDS
GGCCGGCCCAGTGGGTGTCT+GGG 0.418213 4.3:-40137146 None:intergenic
TTCATCTTACAGTGTTAGTC+TGG 0.423960 4.3:+40137320 MS.gene021099:CDS
CCGCCGTTGGGGATGATAGC+TGG 0.427338 4.3:-40137060 None:intergenic
GCCACAGTCGCCGGTGAGGC+AGG 0.428001 4.3:-40137214 None:intergenic
AGGACAGGGAAGCCGCCGTT+GGG 0.431362 4.3:-40137072 None:intergenic
GATTCATCAGTGTTCTTCAC+CGG 0.433172 4.3:+40137641 MS.gene021099:CDS
CCATGCACGGCCGGCCCAGT+GGG 0.440420 4.3:-40137154 None:intergenic
CAGTAGGTTTACAAGTTTGT+GGG 0.445854 4.3:-40137551 None:intergenic
AAGCCGCCGGTGGAGAGGAC+AGG 0.447446 4.3:-40137087 None:intergenic
GTGGGTGTCTGGGACGGGAA+TGG 0.448638 4.3:-40137136 None:intergenic
ACAACTGCCCCTACACCGTC+TGG 0.465738 4.3:+40137037 MS.gene021099:CDS
TCCTGCCTCACCGGCGACTG+TGG 0.467463 4.3:+40137213 MS.gene021099:CDS
TCCACCGGCGGCTTCGAACT+CGG 0.470003 4.3:+40137096 MS.gene021099:CDS
GCAGGAGAATTTGTTGTTGG+TGG 0.473524 4.3:-40137196 None:intergenic
GGTTCTGGCCCATGCACGGC+CGG 0.475650 4.3:-40137163 None:intergenic
TTTGCAGCACCGTGTTCCAA+TGG 0.480332 4.3:+40137446 MS.gene021099:CDS
TTGCAGCACCGTGTTCCAAT+GGG 0.481047 4.3:+40137447 MS.gene021099:CDS
AACAAATTCTCCTGCCTCAC+CGG 0.484751 4.3:+40137204 MS.gene021099:CDS
ATAGCTGGCCAGACGGTGTA+GGG 0.485266 4.3:-40137045 None:intergenic
GAGGACAGGGAAGCCGCCGT+TGG 0.492143 4.3:-40137073 None:intergenic
CCCATGCACGGCCGGCCCAG+TGG 0.493544 4.3:-40137155 None:intergenic
GTTGTTGGTGGTGGAGCAGC+CGG 0.496475 4.3:-40137184 None:intergenic
CCACTGGGCCGGCCGTGCAT+GGG 0.498018 4.3:+40137155 MS.gene021099:CDS
CTGGGACGGGAATGGAGAGG+TGG 0.501641 4.3:-40137128 None:intergenic
AGCCGGTTCTGGCCCATGCA+CGG 0.506037 4.3:-40137167 None:intergenic
CCACTCTTACAAGCCACAAC+AGG 0.507576 4.3:-40137477 None:intergenic
CGTCTCAATTGCAACGGAGC+AGG 0.509039 4.3:+40137240 MS.gene021099:CDS
TGTCTGGGACGGGAATGGAG+AGG 0.512733 4.3:-40137131 None:intergenic
ACAGTAGGTTTACAAGTTTG+TGG 0.515723 4.3:-40137552 None:intergenic
AAAGGTGAGTGTCCCGTTGT+GGG 0.517592 4.3:+40137387 MS.gene021099:CDS
GTCCCAGACACCCACTGGGC+CGG 0.518235 4.3:+40137144 MS.gene021099:CDS
TCGGCTTTACAACCCACAAC+GGG 0.520087 4.3:-40137399 None:intergenic
GAGGCAGGAGAATTTGTTGT+TGG 0.520383 4.3:-40137199 None:intergenic
GATAGCTGGCCAGACGGTGT+AGG 0.521167 4.3:-40137046 None:intergenic
CCTGTTGTGGCTTGTAAGAG+TGG 0.525720 4.3:+40137477 MS.gene021099:CDS
TAAAGGTGAGTGTCCCGTTG+TGG 0.526721 4.3:+40137386 MS.gene021099:CDS
GAACACTGATGAATCAAAGA+AGG 0.532789 4.3:-40137633 None:intergenic
TACAGTGTTAGTCTGGTCGA+TGG 0.538986 4.3:+40137327 MS.gene021099:CDS
GAGACGGTTGCCACAGTCGC+CGG 0.545434 4.3:-40137223 None:intergenic
AGTGAATATTAGGGCTTGAG+AGG 0.546980 4.3:-40137007 None:intergenic
AGCCGCCGGTGGAGAGGACA+GGG 0.549644 4.3:-40137086 None:intergenic
CACCGTGTTCCAATGGGTCA+TGG 0.555886 4.3:+40137453 MS.gene021099:CDS
GGCTTCCCTGTCCTCTCCAC+CGG 0.562247 4.3:+40137081 MS.gene021099:CDS
ATTCATCAGTGTTCTTCACC+GGG 0.570673 4.3:+40137642 MS.gene021099:CDS
AGGACATGAAGCAACAAGAT+CGG 0.572283 4.3:-40137418 None:intergenic
GTTACACCGCATGAGGGTAA+AGG 0.572327 4.3:+40137369 MS.gene021099:CDS
TTTGACTGTTACACCGCATG+AGG 0.572400 4.3:+40137362 MS.gene021099:CDS
ACAACAGGACCATGACCCAT+TGG 0.572570 4.3:-40137462 None:intergenic
AATGGGTCATGGTCCTGTTG+TGG 0.574417 4.3:+40137464 MS.gene021099:CDS
ACCGAGTTCGAAGCCGCCGG+TGG 0.577334 4.3:-40137097 None:intergenic
ATGTACGTCGAACTGTACTA+GGG 0.577377 4.3:-40137280 None:intergenic
GTTCGAAGCCGCCGGTGGAG+AGG 0.578132 4.3:-40137092 None:intergenic
CTGCTCCGTTGCAATTGAGA+CGG 0.579237 4.3:-40137239 None:intergenic
TGGGACGGGAATGGAGAGGT+GGG 0.579840 4.3:-40137127 None:intergenic
TCCCGTCCCAGACACCCACT+GGG 0.584127 4.3:+40137140 MS.gene021099:CDS
CTCAATTGCAACGGAGCAGG+TGG 0.588039 4.3:+40137243 MS.gene021099:CDS
GGTTGAAATGAGAAGTGAGT+TGG 0.590175 4.3:-40136959 None:intergenic
TCATGCGGTGTAACAGTCAA+AGG 0.597597 4.3:-40137360 None:intergenic
GTGACCGAGTTCGAAGCCGC+CGG 0.611089 4.3:-40137100 None:intergenic
GTGAATATTAGGGCTTGAGA+GGG 0.611169 4.3:-40137006 None:intergenic
GGCAACCGTCTCAATTGCAA+CGG 0.619867 4.3:+40137234 MS.gene021099:CDS
TTCCCTGTCCTCTCCACCGG+CGG 0.621201 4.3:+40137084 MS.gene021099:CDS
GAATATGGTGAGAAAGATGA+AGG 0.622035 4.3:-40136980 None:intergenic
CACTCACCTTTACCCTCATG+CGG 0.622292 4.3:-40137375 None:intergenic
GGGGATGATAGCTGGCCAGA+CGG 0.631024 4.3:-40137052 None:intergenic
GACCATGACCCATTGGAACA+CGG 0.632888 4.3:-40137455 None:intergenic
ATCGGCTTTACAACCCACAA+CGG 0.635625 4.3:-40137400 None:intergenic
GGACAGGGAAGCCGCCGTTG+GGG 0.640158 4.3:-40137071 None:intergenic
AAGATAACCTTAAGTTCACC+CGG 0.642367 4.3:-40137660 None:intergenic
TGGCCAGCTATCATCCCCAA+CGG 0.650509 4.3:+40137057 MS.gene021099:CDS
TTGACTGTTACACCGCATGA+GGG 0.659652 4.3:+40137363 MS.gene021099:CDS
GGTTGCCACAGTCGCCGGTG+AGG 0.664371 4.3:-40137218 None:intergenic
TAGCTGGCCAGACGGTGTAG+GGG 0.666219 4.3:-40137044 None:intergenic
CCAGCTATCATCCCCAACGG+CGG 0.674088 4.3:+40137060 MS.gene021099:CDS
AACTGTACTAGGGTTGCAGG+TGG 0.674287 4.3:-40137270 None:intergenic
GTACAGTTCGACGTACATCA+CGG 0.678213 4.3:+40137285 MS.gene021099:CDS
ACACGGTGCTGCAAAACAGG+AGG 0.685097 4.3:-40137438 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTTACAAAAGTGAATATTA+GGG - chr4.3:40137019-40137038 None:intergenic 20.0%
!! TGTTTACAAAAGTGAATATT+AGG - chr4.3:40137020-40137039 None:intergenic 20.0%
! AAGTTTGTGGGTTGTTAAAA+TGG - chr4.3:40137542-40137561 None:intergenic 30.0%
AAAAACTTGGAGTACACAGT+AGG - chr4.3:40137570-40137589 None:intergenic 35.0%
AAGATAACCTTAAGTTCACC+CGG - chr4.3:40137663-40137682 None:intergenic 35.0%
ACAAGCATCCTTGAAAAACT+TGG - chr4.3:40137583-40137602 None:intergenic 35.0%
ACAGTAGGTTTACAAGTTTG+TGG - chr4.3:40137555-40137574 None:intergenic 35.0%
ACAGTGATGAACATTGTTGT+AGG + chr4.3:40137514-40137533 MS.gene021099:CDS 35.0%
CAGTAGGTTTACAAGTTTGT+GGG - chr4.3:40137554-40137573 None:intergenic 35.0%
GAACACTGATGAATCAAAGA+AGG - chr4.3:40137636-40137655 None:intergenic 35.0%
GAATATGGTGAGAAAGATGA+AGG - chr4.3:40136983-40137002 None:intergenic 35.0%
TTCATCTTACAGTGTTAGTC+TGG + chr4.3:40137320-40137339 MS.gene021099:CDS 35.0%
! TGTGTACTCCAAGTTTTTCA+AGG + chr4.3:40137572-40137591 MS.gene021099:CDS 35.0%
!! AATGAGAAGTGAGTTGGTTA+AGG - chr4.3:40136956-40136975 None:intergenic 35.0%
AGGACATGAAGCAACAAGAT+CGG - chr4.3:40137421-40137440 None:intergenic 40.0%
AGTGAATATTAGGGCTTGAG+AGG - chr4.3:40137010-40137029 None:intergenic 40.0%
ATGTACGTCGAACTGTACTA+GGG - chr4.3:40137283-40137302 None:intergenic 40.0%
ATTCATCAGTGTTCTTCACC+GGG + chr4.3:40137642-40137661 MS.gene021099:CDS 40.0%
GATTCATCAGTGTTCTTCAC+CGG + chr4.3:40137641-40137660 MS.gene021099:CDS 40.0%
GGTTGAAATGAGAAGTGAGT+TGG - chr4.3:40136962-40136981 None:intergenic 40.0%
GTGAATATTAGGGCTTGAGA+GGG - chr4.3:40137009-40137028 None:intergenic 40.0%
AACAAATTCTCCTGCCTCAC+CGG + chr4.3:40137204-40137223 MS.gene021099:CDS 45.0%
GATGTACGTCGAACTGTACT+AGG - chr4.3:40137284-40137303 None:intergenic 45.0%
GTACAGTTCGACGTACATCA+CGG + chr4.3:40137285-40137304 MS.gene021099:CDS 45.0%
TCATGCGGTGTAACAGTCAA+AGG - chr4.3:40137363-40137382 None:intergenic 45.0%
TTCTTCACCGGGTGAACTTA+AGG + chr4.3:40137653-40137672 MS.gene021099:CDS 45.0%
TTGACTGTTACACCGCATGA+GGG + chr4.3:40137363-40137382 MS.gene021099:CDS 45.0%
TTTGACTGTTACACCGCATG+AGG + chr4.3:40137362-40137381 MS.gene021099:CDS 45.0%
! ATCGGCTTTACAACCCACAA+CGG - chr4.3:40137403-40137422 None:intergenic 45.0%
! TACAGTGTTAGTCTGGTCGA+TGG + chr4.3:40137327-40137346 MS.gene021099:CDS 45.0%
!! GAGGCAGGAGAATTTGTTGT+TGG - chr4.3:40137202-40137221 None:intergenic 45.0%
!! GCAGGAGAATTTGTTGTTGG+TGG - chr4.3:40137199-40137218 None:intergenic 45.0%
!! GGAGAATTTGTTGTTGGTGG+TGG - chr4.3:40137196-40137215 None:intergenic 45.0%
AAAGGTGAGTGTCCCGTTGT+GGG + chr4.3:40137387-40137406 MS.gene021099:CDS 50.0%
AACTGTACTAGGGTTGCAGG+TGG - chr4.3:40137273-40137292 None:intergenic 50.0%
AATGGGTCATGGTCCTGTTG+TGG + chr4.3:40137464-40137483 MS.gene021099:CDS 50.0%
ACAACAGGACCATGACCCAT+TGG - chr4.3:40137465-40137484 None:intergenic 50.0%
CACTCACCTTTACCCTCATG+CGG - chr4.3:40137378-40137397 None:intergenic 50.0%
CCACTCTTACAAGCCACAAC+AGG - chr4.3:40137480-40137499 None:intergenic 50.0%
CTGCTCCGTTGCAATTGAGA+CGG - chr4.3:40137242-40137261 None:intergenic 50.0%
GACCATGACCCATTGGAACA+CGG - chr4.3:40137458-40137477 None:intergenic 50.0%
GGCAACCGTCTCAATTGCAA+CGG + chr4.3:40137234-40137253 MS.gene021099:CDS 50.0%
GGCTTGAGAGGGTGAGAATA+TGG - chr4.3:40136998-40137017 None:intergenic 50.0%
GTTACACCGCATGAGGGTAA+AGG + chr4.3:40137369-40137388 MS.gene021099:CDS 50.0%
TAAAGGTGAGTGTCCCGTTG+TGG + chr4.3:40137386-40137405 MS.gene021099:CDS 50.0%
TCGAACTGTACTAGGGTTGC+AGG - chr4.3:40137276-40137295 None:intergenic 50.0%
TCGGCTTTACAACCCACAAC+GGG - chr4.3:40137402-40137421 None:intergenic 50.0%
TGAGCAAACGTGAACGTTGC+AGG - chr4.3:40137606-40137625 None:intergenic 50.0%
TTGCAGCACCGTGTTCCAAT+GGG + chr4.3:40137447-40137466 MS.gene021099:CDS 50.0%
TTTGCAGCACCGTGTTCCAA+TGG + chr4.3:40137446-40137465 MS.gene021099:CDS 50.0%
! CCTGTTGTGGCTTGTAAGAG+TGG + chr4.3:40137477-40137496 MS.gene021099:CDS 50.0%
ATAGCTGGCCAGACGGTGTA+GGG - chr4.3:40137048-40137067 None:intergenic 55.0%
CACCGTGTTCCAATGGGTCA+TGG + chr4.3:40137453-40137472 MS.gene021099:CDS 55.0%
CGTCTCAATTGCAACGGAGC+AGG + chr4.3:40137240-40137259 MS.gene021099:CDS 55.0%
CTCAATTGCAACGGAGCAGG+TGG + chr4.3:40137243-40137262 MS.gene021099:CDS 55.0%
TGGCCAGCTATCATCCCCAA+CGG + chr4.3:40137057-40137076 MS.gene021099:CDS 55.0%
!! ACACGGTGCTGCAAAACAGG+AGG - chr4.3:40137441-40137460 None:intergenic 55.0%
!! GGAACACGGTGCTGCAAAAC+AGG - chr4.3:40137444-40137463 None:intergenic 55.0%
ACAACTGCCCCTACACCGTC+TGG + chr4.3:40137037-40137056 MS.gene021099:CDS 60.0%
CCAGCTATCATCCCCAACGG+CGG + chr4.3:40137060-40137079 MS.gene021099:CDS 60.0%
GATAGCTGGCCAGACGGTGT+AGG - chr4.3:40137049-40137068 None:intergenic 60.0%
GGGGATGATAGCTGGCCAGA+CGG - chr4.3:40137055-40137074 None:intergenic 60.0%
TAGCTGGCCAGACGGTGTAG+GGG - chr4.3:40137047-40137066 None:intergenic 60.0%
TGGGACGGGAATGGAGAGGT+GGG - chr4.3:40137130-40137149 None:intergenic 60.0%
! TGTCTGGGACGGGAATGGAG+AGG - chr4.3:40137134-40137153 None:intergenic 60.0%
!! GTTGTTGGTGGTGGAGCAGC+CGG - chr4.3:40137187-40137206 None:intergenic 60.0%
AGGACAGGGAAGCCGCCGTT+GGG - chr4.3:40137075-40137094 None:intergenic 65.0%
CCGCCGTTGGGGATGATAGC+TGG - chr4.3:40137063-40137082 None:intergenic 65.0%
CTGGGACGGGAATGGAGAGG+TGG - chr4.3:40137131-40137150 None:intergenic 65.0%
GAGACGGTTGCCACAGTCGC+CGG - chr4.3:40137226-40137245 None:intergenic 65.0%
GGCTTCCCTGTCCTCTCCAC+CGG + chr4.3:40137081-40137100 MS.gene021099:CDS 65.0%
GTGACCGAGTTCGAAGCCGC+CGG - chr4.3:40137103-40137122 None:intergenic 65.0%
TCCACCGGCGGCTTCGAACT+CGG + chr4.3:40137096-40137115 MS.gene021099:CDS 65.0%
TCCCGTCCCAGACACCCACT+GGG + chr4.3:40137140-40137159 MS.gene021099:CDS 65.0%
TTCCCGTCCCAGACACCCAC+TGG + chr4.3:40137139-40137158 MS.gene021099:CDS 65.0%
TTCCCTGTCCTCTCCACCGG+CGG + chr4.3:40137084-40137103 MS.gene021099:CDS 65.0%
! AGCCGGTTCTGGCCCATGCA+CGG - chr4.3:40137170-40137189 None:intergenic 65.0%
! GTGGGTGTCTGGGACGGGAA+TGG - chr4.3:40137139-40137158 None:intergenic 65.0%
AAGCCGCCGGTGGAGAGGAC+AGG - chr4.3:40137090-40137109 None:intergenic 70.0%
ACCGAGTTCGAAGCCGCCGG+TGG - chr4.3:40137100-40137119 None:intergenic 70.0%
AGCCGCCGGTGGAGAGGACA+GGG - chr4.3:40137089-40137108 None:intergenic 70.0%
GAGGACAGGGAAGCCGCCGT+TGG - chr4.3:40137076-40137095 None:intergenic 70.0%
GGACAGGGAAGCCGCCGTTG+GGG - chr4.3:40137074-40137093 None:intergenic 70.0%
GGCCCAGTGGGTGTCTGGGA+CGG - chr4.3:40137145-40137164 None:intergenic 70.0%
GGCCGTGCATGGGCCAGAAC+CGG + chr4.3:40137165-40137184 MS.gene021099:CDS 70.0%
GGTTGCCACAGTCGCCGGTG+AGG - chr4.3:40137221-40137240 None:intergenic 70.0%
GTCCCAGACACCCACTGGGC+CGG + chr4.3:40137144-40137163 MS.gene021099:CDS 70.0%
GTTCGAAGCCGCCGGTGGAG+AGG - chr4.3:40137095-40137114 None:intergenic 70.0%
TCCTGCCTCACCGGCGACTG+TGG + chr4.3:40137213-40137232 MS.gene021099:CDS 70.0%
! GCCCAGTGGGTGTCTGGGAC+GGG - chr4.3:40137144-40137163 None:intergenic 70.0%
! GGTTCTGGCCCATGCACGGC+CGG - chr4.3:40137166-40137185 None:intergenic 70.0%
!! GGTGGTGGAGCAGCCGGTTC+TGG - chr4.3:40137181-40137200 None:intergenic 70.0%
CCACTGGGCCGGCCGTGCAT+GGG + chr4.3:40137155-40137174 MS.gene021099:CDS 75.0%
CCATGCACGGCCGGCCCAGT+GGG - chr4.3:40137157-40137176 None:intergenic 75.0%
GCCACAGTCGCCGGTGAGGC+AGG - chr4.3:40137217-40137236 None:intergenic 75.0%
GGCCGGCCCAGTGGGTGTCT+GGG - chr4.3:40137149-40137168 None:intergenic 75.0%
! CCCACTGGGCCGGCCGTGCA+TGG + chr4.3:40137154-40137173 MS.gene021099:CDS 80.0%
! CCCATGCACGGCCGGCCCAG+TGG - chr4.3:40137158-40137177 None:intergenic 80.0%
! CGGCCGGCCCAGTGGGTGTC+TGG - chr4.3:40137150-40137169 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 40136934 40137692 40136934 ID=MS.gene021099
chr4.3 mRNA 40136934 40137692 40136934 ID=MS.gene021099.t1;Parent=MS.gene021099
chr4.3 exon 40136934 40137692 40136934 ID=MS.gene021099.t1.exon1;Parent=MS.gene021099.t1
chr4.3 CDS 40136934 40137692 40136934 ID=cds.MS.gene021099.t1;Parent=MS.gene021099.t1
Gene Sequence

>MS.gene021099

ATGGCTTCTTCTTCTTCTTCCTTAACCAACTCACTTCTCATTTCAACCTTCATCTTTCTCACCATATTCTCACCCTCTCAAGCCCTAATATTCACTTTTGTAAACAACTGCCCCTACACCGTCTGGCCAGCTATCATCCCCAACGGCGGCTTCCCTGTCCTCTCCACCGGCGGCTTCGAACTCGGTCACTTCACCCACCTCTCCATTCCCGTCCCAGACACCCACTGGGCCGGCCGTGCATGGGCCAGAACCGGCTGCTCCACCACCAACAACAAATTCTCCTGCCTCACCGGCGACTGTGGCAACCGTCTCAATTGCAACGGAGCAGGTGGTTCACCACCTGCAACCCTAGTACAGTTCGACGTACATCACGGTAACAAAGACTTTTCATCTTACAGTGTTAGTCTGGTCGATGGTTTCAACACTCCTTTGACTGTTACACCGCATGAGGGTAAAGGTGAGTGTCCCGTTGTGGGTTGTAAAGCCGATCTTGTTGCTTCATGTCCTCCTGTTTTGCAGCACCGTGTTCCAATGGGTCATGGTCCTGTTGTGGCTTGTAAGAGTGGTTGTGAAGCTTTTCACAGTGATGAACATTGTTGTAGGAACCATTTTAACAACCCACAAACTTGTAAACCTACTGTGTACTCCAAGTTTTTCAAGGATGCTTGTCCTGCAACGTTCACGTTTGCTCATGATTCTCCTTCTTTGATTCATCAGTGTTCTTCACCGGGTGAACTTAAGGTTATCTTTTGTCATTGA
Protein sequence

>MS.gene021099.t1

MASSSSSLTNSLLISTFIFLTIFSPSQALIFTFVNNCPYTVWPAIIPNGGFPVLSTGGFELGHFTHLSIPVPDTHWAGRAWARTGCSTTNNKFSCLTGDCGNRLNCNGAGGSPPATLVQFDVHHGNKDFSSYSVSLVDGFNTPLTVTPHEGKGECPVVGCKADLVASCPPVLQHRVPMGHGPVVACKSGCEAFHSDEHCCRNHFNNPQTCKPTVYSKFFKDACPATFTFAHDSPSLIHQCSSPGELKVIFCH