AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004055

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004055.t1 MTR_4g063630 96.429 252 9 0 1 252 1 252 3.48e-172 474
MS.gene004055.t1 MTR_1g062590 44.939 247 127 6 7 251 2 241 5.28e-66 205
MS.gene004055.t1 MTR_1g062630 46.154 247 124 6 7 251 2 241 6.33e-66 206
MS.gene004055.t1 MTR_4g073720 45.161 248 121 9 8 251 3 239 3.13e-63 201
MS.gene004055.t1 MTR_1g062340 43.882 237 126 5 17 251 10 241 3.23e-63 198
MS.gene004055.t1 MTR_8g107140 43.775 249 132 6 5 251 2 244 1.01e-62 197
MS.gene004055.t1 MTR_1g062350 42.683 246 134 5 8 251 1 241 2.99e-62 196
MS.gene004055.t1 MTR_1g025420 43.902 246 128 8 12 251 4 245 3.84e-62 196
MS.gene004055.t1 MTR_6g079580 44.215 242 127 7 12 251 4 239 4.56e-62 195
MS.gene004055.t1 MTR_1g025420 43.902 246 128 8 12 251 4 245 4.81e-62 197
MS.gene004055.t1 MTR_1g062660 42.276 246 135 5 8 251 1 241 5.68e-62 195
MS.gene004055.t1 MTR_1g062370 42.276 246 135 5 8 251 1 241 7.13e-62 194
MS.gene004055.t1 MTR_8g036215 41.423 239 129 6 16 251 7 237 3.20e-61 192
MS.gene004055.t1 MTR_7g102380 44.395 223 117 5 31 251 23 240 4.47e-61 192
MS.gene004055.t1 MTR_6g009480 43.852 244 128 7 12 251 13 251 2.60e-59 189
MS.gene004055.t1 MTR_8g075550 45.175 228 114 7 31 251 30 253 3.52e-59 190
MS.gene004055.t1 MTR_8g037890 42.248 258 130 10 1 251 1 246 4.69e-59 190
MS.gene004055.t1 MTR_3g114030 44.889 225 116 7 31 251 9 229 5.03e-59 187
MS.gene004055.t1 MTR_5g059200 42.688 253 122 10 7 251 2 239 4.28e-58 186
MS.gene004055.t1 MTR_4g073730 40.741 243 138 6 12 251 8 247 6.81e-58 186
MS.gene004055.t1 MTR_4g073730 40.741 243 138 6 12 251 8 247 1.44e-57 186
MS.gene004055.t1 MTR_3g068015 38.889 252 141 5 8 251 1 247 6.61e-57 182
MS.gene004055.t1 MTR_5g022350 45.740 223 106 8 31 251 33 242 6.88e-56 181
MS.gene004055.t1 MTR_8g056820 40.625 256 134 10 3 251 2 246 1.20e-55 179
MS.gene004055.t1 MTR_5g022310 41.313 259 135 11 1 251 1 250 3.70e-55 178
MS.gene004055.t1 MTR_1g021945 44.828 232 112 9 26 251 23 244 5.30e-55 177
MS.gene004055.t1 MTR_5g022310 41.313 259 135 11 1 251 1 250 8.71e-55 178
MS.gene004055.t1 MTR_2g069660 40.741 243 136 6 12 251 5 242 1.58e-54 176
MS.gene004055.t1 MTR_7g062610 37.805 246 146 5 7 251 2 241 2.41e-54 175
MS.gene004055.t1 MTR_8g075510 41.736 242 123 8 12 251 18 243 2.74e-54 175
MS.gene004055.t1 MTR_8g075510 41.736 242 123 8 12 251 18 243 7.86e-54 176
MS.gene004055.t1 MTR_3g111620 41.048 229 125 7 26 251 24 245 1.56e-52 171
MS.gene004055.t1 MTR_1g062690 37.143 245 125 4 8 251 1 217 1.31e-49 162
MS.gene004055.t1 MTR_2g068030 41.410 227 121 8 31 252 25 244 1.00e-48 161
MS.gene004055.t1 MTR_2g067980 40.726 248 128 9 16 251 6 246 3.70e-47 167
MS.gene004055.t1 MTR_2g068655 39.827 231 127 8 26 251 28 251 4.98e-47 159
MS.gene004055.t1 MTR_5g010635 37.991 229 116 10 25 251 20 224 1.13e-38 135
MS.gene004055.t1 MTR_8g096900 34.016 244 131 9 13 251 29 247 2.56e-37 132
MS.gene004055.t1 MTR_5g010640 35.223 247 131 10 14 251 9 235 6.26e-36 127
MS.gene004055.t1 MTR_2g063150 34.310 239 140 8 6 233 2 234 6.96e-36 128
MS.gene004055.t1 MTR_8g089020 45.038 131 65 3 111 241 31 154 2.36e-33 119
MS.gene004055.t1 MTR_5g023850 37.755 196 106 9 1 189 1 187 1.32e-31 116
MS.gene004055.t1 MTR_1g062390 32.819 259 137 11 8 251 1 237 2.07e-31 116
MS.gene004055.t1 MTR_2g067990 38.326 227 100 13 31 251 29 221 2.58e-30 119
MS.gene004055.t1 MTR_5g022350 48.855 131 59 5 31 159 98 222 1.71e-29 110
MS.gene004055.t1 MTR_2g067970 37.297 185 102 8 74 251 4 181 1.20e-28 114
MS.gene004055.t1 MTR_7g076360 29.956 227 90 6 22 246 1 160 6.77e-25 97.4
MS.gene004055.t1 MTR_8g096910 40.288 139 71 5 7 144 2 129 1.03e-22 91.7
MS.gene004055.t1 MTR_8g096920 35.758 165 91 7 11 174 2 152 5.04e-20 84.7
MS.gene004055.t1 MTR_1g062640 42.742 124 61 4 49 170 32 147 2.74e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004055.t1 AT2G28790 66.393 244 76 3 13 252 33 274 4.32e-114 328
MS.gene004055.t1 AT2G28790 66.393 244 76 3 13 252 8 249 4.78e-114 327
MS.gene004055.t1 AT4G38660 43.083 253 132 6 1 251 2 244 1.51e-62 199
MS.gene004055.t1 AT5G40020 41.732 254 138 6 1 251 1 247 1.10e-61 194
MS.gene004055.t1 AT1G73620 45.815 227 116 5 26 251 39 259 3.32e-61 194
MS.gene004055.t1 AT4G38660 44.397 232 117 6 22 251 1 222 9.09e-61 194
MS.gene004055.t1 AT1G77700 43.750 240 117 9 17 251 45 271 1.68e-59 191
MS.gene004055.t1 AT1G18250 44.934 227 118 5 26 251 19 239 2.15e-59 188
MS.gene004055.t1 AT1G20030 45.575 226 115 7 31 251 5 227 2.31e-59 190
MS.gene004055.t1 AT1G77700 43.750 240 117 9 17 251 45 271 2.65e-59 191
MS.gene004055.t1 AT1G20030 45.575 226 115 7 31 251 22 244 3.42e-59 190
MS.gene004055.t1 AT1G18250 44.541 229 120 5 24 251 16 238 4.27e-59 187
MS.gene004055.t1 AT1G75800 44.490 245 125 8 12 251 9 247 6.29e-59 190
MS.gene004055.t1 AT1G75040 43.902 246 122 10 10 251 5 238 1.26e-58 186
MS.gene004055.t1 AT5G24620 42.979 235 127 5 22 251 18 250 1.51e-58 191
MS.gene004055.t1 AT2G17860 41.057 246 134 7 14 251 6 248 3.15e-58 186
MS.gene004055.t1 AT5G24620 42.979 235 127 5 22 251 94 326 5.87e-58 192
MS.gene004055.t1 AT5G24620 42.979 235 127 5 22 251 73 305 6.04e-58 191
MS.gene004055.t1 AT1G19320 41.365 249 132 7 9 251 6 246 6.49e-58 184
MS.gene004055.t1 AT1G77700 44.000 225 112 8 28 251 88 299 7.54e-57 185
MS.gene004055.t1 AT1G75030 42.387 243 134 6 10 251 5 242 8.86e-57 182
MS.gene004055.t1 AT4G38670 38.554 249 144 7 8 251 2 246 3.78e-56 181
MS.gene004055.t1 AT4G38670 38.554 249 144 7 8 251 2 246 3.78e-56 181
MS.gene004055.t1 AT1G75050 43.673 245 128 9 10 251 5 242 1.56e-55 178
MS.gene004055.t1 AT4G36010 42.424 231 117 8 31 251 25 249 5.59e-55 179
MS.gene004055.t1 AT4G36010 42.424 231 117 8 31 251 25 249 5.59e-55 179
MS.gene004055.t1 AT4G24180 41.600 250 123 9 12 251 14 250 6.13e-55 177
MS.gene004055.t1 AT4G24180 41.600 250 123 9 12 251 14 250 1.37e-54 178
MS.gene004055.t1 AT4G24180 42.105 247 121 8 12 248 14 248 4.35e-54 177
MS.gene004055.t1 AT4G38670 40.000 230 129 7 27 251 5 230 8.00e-54 175
MS.gene004055.t1 AT4G24180 40.873 252 127 9 12 251 14 255 8.07e-54 174
MS.gene004055.t1 AT4G24180 40.873 252 127 9 12 251 14 255 1.69e-53 175
MS.gene004055.t1 AT4G24180 41.365 249 125 8 12 248 14 253 6.00e-53 174
MS.gene004055.t1 AT5G02140 39.662 237 136 5 17 251 9 240 9.33e-52 169
MS.gene004055.t1 AT5G02140 39.662 237 136 5 17 251 9 240 1.54e-51 170
MS.gene004055.t1 AT5G38280 37.143 245 142 8 12 251 12 249 8.42e-43 154
MS.gene004055.t1 AT5G38280 37.143 245 142 8 12 251 12 249 9.50e-43 154
MS.gene004055.t1 AT4G11650 34.694 245 131 12 11 251 3 222 4.80e-37 131
MS.gene004055.t1 AT4G18253 35.124 242 141 6 12 251 10 237 5.05e-36 128
MS.gene004055.t1 AT4G36000 41.611 149 74 5 104 251 1 137 2.34e-34 123
MS.gene004055.t1 AT4G36000 41.611 149 74 5 104 251 1 137 2.34e-34 123
MS.gene004055.t1 AT4G18250 37.037 243 137 9 12 251 42 271 6.33e-34 129
MS.gene004055.t1 AT1G70250 33.333 228 137 9 31 251 147 366 1.27e-28 114
MS.gene004055.t1 AT5G24620 44.167 120 62 3 136 251 15 133 3.23e-24 99.0
MS.gene004055.t1 AT2G24810 46.575 73 38 1 179 251 121 192 5.41e-15 71.6

Find 97 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTACAAAGGTGAATATT+AGG 0.192517 4.2:-41684409 None:intergenic
AAGTTTGTGGGTTGTTAAAA+TGG 0.224217 4.2:-41684931 None:intergenic
CGGCCGGCCCAGTGGGTGTC+TGG 0.228338 4.2:-41684539 None:intergenic
GGCTTGAGAGGGTGAGAATA+TGG 0.325859 4.2:-41684387 None:intergenic
GGTGGTGGAGCAGCCGGTTC+TGG 0.335053 4.2:-41684570 None:intergenic
TTCTTCACCGGGTGAACTTA+AGG 0.359396 4.2:+41685045 MS.gene004055:CDS
GTTTACAAAGGTGAATATTA+GGG 0.376062 4.2:-41684408 None:intergenic
TTCCCGTCCCAGACACCCAC+TGG 0.378709 4.2:+41684531 MS.gene004055:CDS
CCCACTGGGCCGGCCGTGCA+TGG 0.379602 4.2:+41684546 MS.gene004055:CDS
AATGAGAAGTGAGTTGGTTA+AGG 0.388408 4.2:-41684345 None:intergenic
TGAGCAAACGTGAACGTTGC+AGG 0.391907 4.2:-41684995 None:intergenic
GGCCGTGCATGGGCCAGAAC+CGG 0.396060 4.2:+41684557 MS.gene004055:CDS
GGAACACGGTGCTGCAAAAC+AGG 0.402377 4.2:-41684833 None:intergenic
GATGTACGTCGAACTGTACT+AGG 0.403471 4.2:-41684673 None:intergenic
GCCCAGTGGGTGTCTGGGAC+GGG 0.404695 4.2:-41684533 None:intergenic
TCGAACTGTACTAGGGTTGC+AGG 0.406854 4.2:-41684665 None:intergenic
GGAGAATTTGTTGTTGGTGG+TGG 0.409407 4.2:-41684585 None:intergenic
GGCCCAGTGGGTGTCTGGGA+CGG 0.412521 4.2:-41684534 None:intergenic
ACAGTGATGAACATTGTTGT+AGG 0.414434 4.2:+41684906 MS.gene004055:CDS
GGCCGGCCCAGTGGGTGTCT+GGG 0.418213 4.2:-41684538 None:intergenic
TTCATCTTACAGTGTTAGTC+TGG 0.423960 4.2:+41684712 MS.gene004055:CDS
CCGCCGTTGGGGATGATAGC+TGG 0.427338 4.2:-41684452 None:intergenic
GCCACAGTCGCCGGTGAGGC+AGG 0.428001 4.2:-41684606 None:intergenic
GATTCATCAGTGTTCTTCAC+CGG 0.433172 4.2:+41685033 MS.gene004055:CDS
CCATGCACGGCCGGCCCAGT+GGG 0.440420 4.2:-41684546 None:intergenic
CAGTAGGTTTACAAGTTTGT+GGG 0.445854 4.2:-41684943 None:intergenic
GTGGGTGTCTGGGACGGGAA+TGG 0.448638 4.2:-41684528 None:intergenic
GTGAGAATATGGTGAGAAAG+AGG 0.460599 4.2:-41684376 None:intergenic
AGGACAGGGAAGCCGCCGTT+GGG 0.463976 4.2:-41684464 None:intergenic
ACAACTGCCCCTACACCGTC+TGG 0.465738 4.2:+41684429 MS.gene004055:CDS
TCCTGCCTCACCGGCGACTG+TGG 0.467463 4.2:+41684605 MS.gene004055:CDS
GCAGGAGAATTTGTTGTTGG+TGG 0.473524 4.2:-41684588 None:intergenic
GGTTCTGGCCCATGCACGGC+CGG 0.475650 4.2:-41684555 None:intergenic
TTTGCAGCACCGTGTTCCAA+TGG 0.480332 4.2:+41684838 MS.gene004055:CDS
TTGCAGCACCGTGTTCCAAT+GGG 0.481047 4.2:+41684839 MS.gene004055:CDS
AACAAATTCTCCTGCCTCAC+CGG 0.484751 4.2:+41684596 MS.gene004055:CDS
ATAGCTGGCCAGACGGTGTA+GGG 0.485266 4.2:-41684437 None:intergenic
CCCATGCACGGCCGGCCCAG+TGG 0.493544 4.2:-41684547 None:intergenic
GTTGTTGGTGGTGGAGCAGC+CGG 0.496475 4.2:-41684576 None:intergenic
CCACTGGGCCGGCCGTGCAT+GGG 0.498018 4.2:+41684547 MS.gene004055:CDS
CTGGGACGGGAATGGAGAGG+TGG 0.501641 4.2:-41684520 None:intergenic
AAGCCGCCGGTAGAGAGGAC+AGG 0.504282 4.2:-41684479 None:intergenic
AGCCGGTTCTGGCCCATGCA+CGG 0.506037 4.2:-41684559 None:intergenic
TCTACCGGCGGCTTCGAACT+CGG 0.506461 4.2:+41684488 MS.gene004055:CDS
CCACTCTTACAAGCCACAAC+AGG 0.507576 4.2:-41684869 None:intergenic
CGTCTCAATTGCAACGGAGC+AGG 0.509039 4.2:+41684632 MS.gene004055:CDS
TGTCTGGGACGGGAATGGAG+AGG 0.512733 4.2:-41684523 None:intergenic
ACAGTAGGTTTACAAGTTTG+TGG 0.515723 4.2:-41684944 None:intergenic
AAAGGTGAGTGTCCCGTTGT+GGG 0.517592 4.2:+41684779 MS.gene004055:CDS
GTCCCAGACACCCACTGGGC+CGG 0.518235 4.2:+41684536 MS.gene004055:CDS
TCGGCTTTACAACCCACAAC+GGG 0.520087 4.2:-41684791 None:intergenic
GAGGCAGGAGAATTTGTTGT+TGG 0.520383 4.2:-41684591 None:intergenic
GATAGCTGGCCAGACGGTGT+AGG 0.521167 4.2:-41684438 None:intergenic
CCTGTTGTGGCTTGTAAGAG+TGG 0.525720 4.2:+41684869 MS.gene004055:CDS
TAAAGGTGAGTGTCCCGTTG+TGG 0.526721 4.2:+41684778 MS.gene004055:CDS
GAATATGGTGAGAAAGAGGA+AGG 0.526737 4.2:-41684372 None:intergenic
GGTAGAAATGAGAAGTGAGT+TGG 0.527432 4.2:-41684351 None:intergenic
GAGGACAGGGAAGCCGCCGT+TGG 0.529494 4.2:-41684465 None:intergenic
GAACACTGATGAATCAAAGA+AGG 0.532789 4.2:-41685025 None:intergenic
GGCTTCCCTGTCCTCTCTAC+CGG 0.537902 4.2:+41684473 MS.gene004055:CDS
TACAGTGTTAGTCTGGTCGA+TGG 0.538986 4.2:+41684719 MS.gene004055:CDS
GAGACGGTTGCCACAGTCGC+CGG 0.545434 4.2:-41684615 None:intergenic
AGCCGCCGGTAGAGAGGACA+GGG 0.552904 4.2:-41684478 None:intergenic
CACCGTGTTCCAATGGGTCA+TGG 0.555886 4.2:+41684845 MS.gene004055:CDS
GGTGAATATTAGGGCTTGAG+AGG 0.569518 4.2:-41684399 None:intergenic
ATTCATCAGTGTTCTTCACC+GGG 0.570673 4.2:+41685034 MS.gene004055:CDS
AGGACATGAAGCAACAAGAT+CGG 0.572283 4.2:-41684810 None:intergenic
GTTACACCGCATGAGGGTAA+AGG 0.572327 4.2:+41684761 MS.gene004055:CDS
TTTGACTGTTACACCGCATG+AGG 0.572400 4.2:+41684754 MS.gene004055:CDS
ACAACAGGACCATGACCCAT+TGG 0.572570 4.2:-41684854 None:intergenic
AATGGGTCATGGTCCTGTTG+TGG 0.574417 4.2:+41684856 MS.gene004055:CDS
ATGTACGTCGAACTGTACTA+GGG 0.577377 4.2:-41684672 None:intergenic
CTGCTCCGTTGCAATTGAGA+CGG 0.579237 4.2:-41684631 None:intergenic
TGGGACGGGAATGGAGAGGT+GGG 0.579840 4.2:-41684519 None:intergenic
TCCCGTCCCAGACACCCACT+GGG 0.584127 4.2:+41684532 MS.gene004055:CDS
CTCAATTGCAACGGAGCAGG+TGG 0.588039 4.2:+41684635 MS.gene004055:CDS
GTTCGAAGCCGCCGGTAGAG+AGG 0.593228 4.2:-41684484 None:intergenic
TCATGCGGTGTAACAGTCAA+AGG 0.597597 4.2:-41684752 None:intergenic
GGCAACCGTCTCAATTGCAA+CGG 0.619867 4.2:+41684626 MS.gene004055:CDS
CACTCACCTTTACCCTCATG+CGG 0.622292 4.2:-41684767 None:intergenic
GTGAATATTAGGGCTTGAGA+GGG 0.628563 4.2:-41684398 None:intergenic
GGGGATGATAGCTGGCCAGA+CGG 0.631024 4.2:-41684444 None:intergenic
GTGACCGAGTTCGAAGCCGC+CGG 0.631127 4.2:-41684492 None:intergenic
GACCATGACCCATTGGAACA+CGG 0.632888 4.2:-41684847 None:intergenic
ATCGGCTTTACAACCCACAA+CGG 0.635625 4.2:-41684792 None:intergenic
GTAGGGGCAGTTGTTTACAA+AGG 0.637176 4.2:-41684420 None:intergenic
GGACAGGGAAGCCGCCGTTG+GGG 0.640158 4.2:-41684463 None:intergenic
AAGATAACCTTAAGTTCACC+CGG 0.642367 4.2:-41685052 None:intergenic
TGGCCAGCTATCATCCCCAA+CGG 0.650509 4.2:+41684449 MS.gene004055:CDS
TTGACTGTTACACCGCATGA+GGG 0.659652 4.2:+41684755 MS.gene004055:CDS
TTCCCTGTCCTCTCTACCGG+CGG 0.660864 4.2:+41684476 MS.gene004055:CDS
GGTTGCCACAGTCGCCGGTG+AGG 0.664371 4.2:-41684610 None:intergenic
TAGCTGGCCAGACGGTGTAG+GGG 0.666219 4.2:-41684436 None:intergenic
CCAGCTATCATCCCCAACGG+CGG 0.674088 4.2:+41684452 MS.gene004055:CDS
AACTGTACTAGGGTTGCAGG+TGG 0.674287 4.2:-41684662 None:intergenic
GTACAGTTCGACGTACATCA+CGG 0.678213 4.2:+41684677 MS.gene004055:CDS
ACACGGTGCTGCAAAACAGG+AGG 0.685097 4.2:-41684830 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GTTTACAAAGGTGAATATTA+GGG - chr4.2:41684411-41684430 None:intergenic 25.0%
! TGTTTACAAAGGTGAATATT+AGG - chr4.2:41684412-41684431 None:intergenic 25.0%
! AAGTTTGTGGGTTGTTAAAA+TGG - chr4.2:41684934-41684953 None:intergenic 30.0%
AAAAACTTGGAGTACACAGT+AGG - chr4.2:41684962-41684981 None:intergenic 35.0%
AAGATAACCTTAAGTTCACC+CGG - chr4.2:41685055-41685074 None:intergenic 35.0%
ACAAGCATCCTTGAAAAACT+TGG - chr4.2:41684975-41684994 None:intergenic 35.0%
ACAGTAGGTTTACAAGTTTG+TGG - chr4.2:41684947-41684966 None:intergenic 35.0%
ACAGTGATGAACATTGTTGT+AGG + chr4.2:41684906-41684925 MS.gene004055:CDS 35.0%
CAGTAGGTTTACAAGTTTGT+GGG - chr4.2:41684946-41684965 None:intergenic 35.0%
GAACACTGATGAATCAAAGA+AGG - chr4.2:41685028-41685047 None:intergenic 35.0%
TTCATCTTACAGTGTTAGTC+TGG + chr4.2:41684712-41684731 MS.gene004055:CDS 35.0%
! TGTGTACTCCAAGTTTTTCA+AGG + chr4.2:41684964-41684983 MS.gene004055:CDS 35.0%
!! AATGAGAAGTGAGTTGGTTA+AGG - chr4.2:41684348-41684367 None:intergenic 35.0%
AGGACATGAAGCAACAAGAT+CGG - chr4.2:41684813-41684832 None:intergenic 40.0%
ATGTACGTCGAACTGTACTA+GGG - chr4.2:41684675-41684694 None:intergenic 40.0%
ATTCATCAGTGTTCTTCACC+GGG + chr4.2:41685034-41685053 MS.gene004055:CDS 40.0%
GAATATGGTGAGAAAGAGGA+AGG - chr4.2:41684375-41684394 None:intergenic 40.0%
GATTCATCAGTGTTCTTCAC+CGG + chr4.2:41685033-41685052 MS.gene004055:CDS 40.0%
GGTAGAAATGAGAAGTGAGT+TGG - chr4.2:41684354-41684373 None:intergenic 40.0%
GTGAATATTAGGGCTTGAGA+GGG - chr4.2:41684401-41684420 None:intergenic 40.0%
GTGAGAATATGGTGAGAAAG+AGG - chr4.2:41684379-41684398 None:intergenic 40.0%
AACAAATTCTCCTGCCTCAC+CGG + chr4.2:41684596-41684615 MS.gene004055:CDS 45.0%
GATGTACGTCGAACTGTACT+AGG - chr4.2:41684676-41684695 None:intergenic 45.0%
GGTGAATATTAGGGCTTGAG+AGG - chr4.2:41684402-41684421 None:intergenic 45.0%
GTACAGTTCGACGTACATCA+CGG + chr4.2:41684677-41684696 MS.gene004055:CDS 45.0%
GTAGGGGCAGTTGTTTACAA+AGG - chr4.2:41684423-41684442 None:intergenic 45.0%
TCATGCGGTGTAACAGTCAA+AGG - chr4.2:41684755-41684774 None:intergenic 45.0%
TTCTTCACCGGGTGAACTTA+AGG + chr4.2:41685045-41685064 MS.gene004055:CDS 45.0%
TTGACTGTTACACCGCATGA+GGG + chr4.2:41684755-41684774 MS.gene004055:CDS 45.0%
TTTGACTGTTACACCGCATG+AGG + chr4.2:41684754-41684773 MS.gene004055:CDS 45.0%
! ATCGGCTTTACAACCCACAA+CGG - chr4.2:41684795-41684814 None:intergenic 45.0%
! TACAGTGTTAGTCTGGTCGA+TGG + chr4.2:41684719-41684738 MS.gene004055:CDS 45.0%
!! GAGGCAGGAGAATTTGTTGT+TGG - chr4.2:41684594-41684613 None:intergenic 45.0%
!! GCAGGAGAATTTGTTGTTGG+TGG - chr4.2:41684591-41684610 None:intergenic 45.0%
!! GGAGAATTTGTTGTTGGTGG+TGG - chr4.2:41684588-41684607 None:intergenic 45.0%
AAAGGTGAGTGTCCCGTTGT+GGG + chr4.2:41684779-41684798 MS.gene004055:CDS 50.0%
AACTGTACTAGGGTTGCAGG+TGG - chr4.2:41684665-41684684 None:intergenic 50.0%
AATGGGTCATGGTCCTGTTG+TGG + chr4.2:41684856-41684875 MS.gene004055:CDS 50.0%
ACAACAGGACCATGACCCAT+TGG - chr4.2:41684857-41684876 None:intergenic 50.0%
CACTCACCTTTACCCTCATG+CGG - chr4.2:41684770-41684789 None:intergenic 50.0%
CCACTCTTACAAGCCACAAC+AGG - chr4.2:41684872-41684891 None:intergenic 50.0%
CTGCTCCGTTGCAATTGAGA+CGG - chr4.2:41684634-41684653 None:intergenic 50.0%
GACCATGACCCATTGGAACA+CGG - chr4.2:41684850-41684869 None:intergenic 50.0%
GGCAACCGTCTCAATTGCAA+CGG + chr4.2:41684626-41684645 MS.gene004055:CDS 50.0%
GGCTTGAGAGGGTGAGAATA+TGG - chr4.2:41684390-41684409 None:intergenic 50.0%
GTTACACCGCATGAGGGTAA+AGG + chr4.2:41684761-41684780 MS.gene004055:CDS 50.0%
TAAAGGTGAGTGTCCCGTTG+TGG + chr4.2:41684778-41684797 MS.gene004055:CDS 50.0%
TCGAACTGTACTAGGGTTGC+AGG - chr4.2:41684668-41684687 None:intergenic 50.0%
TCGGCTTTACAACCCACAAC+GGG - chr4.2:41684794-41684813 None:intergenic 50.0%
TGAGCAAACGTGAACGTTGC+AGG - chr4.2:41684998-41685017 None:intergenic 50.0%
TTGCAGCACCGTGTTCCAAT+GGG + chr4.2:41684839-41684858 MS.gene004055:CDS 50.0%
TTTGCAGCACCGTGTTCCAA+TGG + chr4.2:41684838-41684857 MS.gene004055:CDS 50.0%
! CCTGTTGTGGCTTGTAAGAG+TGG + chr4.2:41684869-41684888 MS.gene004055:CDS 50.0%
ATAGCTGGCCAGACGGTGTA+GGG - chr4.2:41684440-41684459 None:intergenic 55.0%
CACCGTGTTCCAATGGGTCA+TGG + chr4.2:41684845-41684864 MS.gene004055:CDS 55.0%
CGTCTCAATTGCAACGGAGC+AGG + chr4.2:41684632-41684651 MS.gene004055:CDS 55.0%
CTCAATTGCAACGGAGCAGG+TGG + chr4.2:41684635-41684654 MS.gene004055:CDS 55.0%
TGGCCAGCTATCATCCCCAA+CGG + chr4.2:41684449-41684468 MS.gene004055:CDS 55.0%
!! ACACGGTGCTGCAAAACAGG+AGG - chr4.2:41684833-41684852 None:intergenic 55.0%
!! GGAACACGGTGCTGCAAAAC+AGG - chr4.2:41684836-41684855 None:intergenic 55.0%
ACAACTGCCCCTACACCGTC+TGG + chr4.2:41684429-41684448 MS.gene004055:CDS 60.0%
CCAGCTATCATCCCCAACGG+CGG + chr4.2:41684452-41684471 MS.gene004055:CDS 60.0%
GATAGCTGGCCAGACGGTGT+AGG - chr4.2:41684441-41684460 None:intergenic 60.0%
GGCTTCCCTGTCCTCTCTAC+CGG + chr4.2:41684473-41684492 MS.gene004055:CDS 60.0%
GGGGATGATAGCTGGCCAGA+CGG - chr4.2:41684447-41684466 None:intergenic 60.0%
TAGCTGGCCAGACGGTGTAG+GGG - chr4.2:41684439-41684458 None:intergenic 60.0%
TCTACCGGCGGCTTCGAACT+CGG + chr4.2:41684488-41684507 MS.gene004055:CDS 60.0%
TGGGACGGGAATGGAGAGGT+GGG - chr4.2:41684522-41684541 None:intergenic 60.0%
TTCCCTGTCCTCTCTACCGG+CGG + chr4.2:41684476-41684495 MS.gene004055:CDS 60.0%
! TGTCTGGGACGGGAATGGAG+AGG - chr4.2:41684526-41684545 None:intergenic 60.0%
!! GTTGTTGGTGGTGGAGCAGC+CGG - chr4.2:41684579-41684598 None:intergenic 60.0%
AAGCCGCCGGTAGAGAGGAC+AGG - chr4.2:41684482-41684501 None:intergenic 65.0%
AGCCGCCGGTAGAGAGGACA+GGG - chr4.2:41684481-41684500 None:intergenic 65.0%
AGGACAGGGAAGCCGCCGTT+GGG - chr4.2:41684467-41684486 None:intergenic 65.0%
CCGCCGTTGGGGATGATAGC+TGG - chr4.2:41684455-41684474 None:intergenic 65.0%
CTGGGACGGGAATGGAGAGG+TGG - chr4.2:41684523-41684542 None:intergenic 65.0%
GAGACGGTTGCCACAGTCGC+CGG - chr4.2:41684618-41684637 None:intergenic 65.0%
GTGACCGAGTTCGAAGCCGC+CGG - chr4.2:41684495-41684514 None:intergenic 65.0%
GTTCGAAGCCGCCGGTAGAG+AGG - chr4.2:41684487-41684506 None:intergenic 65.0%
TCCCGTCCCAGACACCCACT+GGG + chr4.2:41684532-41684551 MS.gene004055:CDS 65.0%
TTCCCGTCCCAGACACCCAC+TGG + chr4.2:41684531-41684550 MS.gene004055:CDS 65.0%
! AGCCGGTTCTGGCCCATGCA+CGG - chr4.2:41684562-41684581 None:intergenic 65.0%
! GTGGGTGTCTGGGACGGGAA+TGG - chr4.2:41684531-41684550 None:intergenic 65.0%
GAGGACAGGGAAGCCGCCGT+TGG - chr4.2:41684468-41684487 None:intergenic 70.0%
GGACAGGGAAGCCGCCGTTG+GGG - chr4.2:41684466-41684485 None:intergenic 70.0%
GGCCCAGTGGGTGTCTGGGA+CGG - chr4.2:41684537-41684556 None:intergenic 70.0%
GGCCGTGCATGGGCCAGAAC+CGG + chr4.2:41684557-41684576 MS.gene004055:CDS 70.0%
GGTTGCCACAGTCGCCGGTG+AGG - chr4.2:41684613-41684632 None:intergenic 70.0%
GTCCCAGACACCCACTGGGC+CGG + chr4.2:41684536-41684555 MS.gene004055:CDS 70.0%
TCCTGCCTCACCGGCGACTG+TGG + chr4.2:41684605-41684624 MS.gene004055:CDS 70.0%
! GCCCAGTGGGTGTCTGGGAC+GGG - chr4.2:41684536-41684555 None:intergenic 70.0%
! GGTTCTGGCCCATGCACGGC+CGG - chr4.2:41684558-41684577 None:intergenic 70.0%
!! GGTGGTGGAGCAGCCGGTTC+TGG - chr4.2:41684573-41684592 None:intergenic 70.0%
CCACTGGGCCGGCCGTGCAT+GGG + chr4.2:41684547-41684566 MS.gene004055:CDS 75.0%
CCATGCACGGCCGGCCCAGT+GGG - chr4.2:41684549-41684568 None:intergenic 75.0%
GCCACAGTCGCCGGTGAGGC+AGG - chr4.2:41684609-41684628 None:intergenic 75.0%
GGCCGGCCCAGTGGGTGTCT+GGG - chr4.2:41684541-41684560 None:intergenic 75.0%
! CCCACTGGGCCGGCCGTGCA+TGG + chr4.2:41684546-41684565 MS.gene004055:CDS 80.0%
! CCCATGCACGGCCGGCCCAG+TGG - chr4.2:41684550-41684569 None:intergenic 80.0%
! CGGCCGGCCCAGTGGGTGTC+TGG - chr4.2:41684542-41684561 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 41684326 41685084 41684326 ID=MS.gene004055
chr4.2 mRNA 41684326 41685084 41684326 ID=MS.gene004055.t1;Parent=MS.gene004055
chr4.2 exon 41684326 41685084 41684326 ID=MS.gene004055.t1.exon1;Parent=MS.gene004055.t1
chr4.2 CDS 41684326 41685084 41684326 ID=cds.MS.gene004055.t1;Parent=MS.gene004055.t1
Gene Sequence

>MS.gene004055

ATGGCTTCTTCTTCTTCTTCCTTAACCAACTCACTTCTCATTTCTACCTTCCTCTTTCTCACCATATTCTCACCCTCTCAAGCCCTAATATTCACCTTTGTAAACAACTGCCCCTACACCGTCTGGCCAGCTATCATCCCCAACGGCGGCTTCCCTGTCCTCTCTACCGGCGGCTTCGAACTCGGTCACTTCACCCACCTCTCCATTCCCGTCCCAGACACCCACTGGGCCGGCCGTGCATGGGCCAGAACCGGCTGCTCCACCACCAACAACAAATTCTCCTGCCTCACCGGCGACTGTGGCAACCGTCTCAATTGCAACGGAGCAGGTGGTTCACCACCTGCAACCCTAGTACAGTTCGACGTACATCACGGTAACAAAGACTTTTCATCTTACAGTGTTAGTCTGGTCGATGGTTTCAACACTCCTTTGACTGTTACACCGCATGAGGGTAAAGGTGAGTGTCCCGTTGTGGGTTGTAAAGCCGATCTTGTTGCTTCATGTCCTCCTGTTTTGCAGCACCGTGTTCCAATGGGTCATGGTCCTGTTGTGGCTTGTAAGAGTGGTTGTGAAGCTTTTCACAGTGATGAACATTGTTGTAGGAACCATTTTAACAACCCACAAACTTGTAAACCTACTGTGTACTCCAAGTTTTTCAAGGATGCTTGTCCTGCAACGTTCACGTTTGCTCATGATTCTCCTTCTTTGATTCATCAGTGTTCTTCACCGGGTGAACTTAAGGTTATCTTTTGTCATTGA
Protein sequence

>MS.gene004055.t1

MASSSSSLTNSLLISTFLFLTIFSPSQALIFTFVNNCPYTVWPAIIPNGGFPVLSTGGFELGHFTHLSIPVPDTHWAGRAWARTGCSTTNNKFSCLTGDCGNRLNCNGAGGSPPATLVQFDVHHGNKDFSSYSVSLVDGFNTPLTVTPHEGKGECPVVGCKADLVASCPPVLQHRVPMGHGPVVACKSGCEAFHSDEHCCRNHFNNPQTCKPTVYSKFFKDACPATFTFAHDSPSLIHQCSSPGELKVIFCH