AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046990.t1 MTR_8g107140 89.668 271 6 2 1 271 1 249 1.11e-175 484
MS.gene046990.t1 MTR_6g079580 67.480 246 73 2 22 267 2 240 9.94e-128 362
MS.gene046990.t1 MTR_8g036215 59.091 220 88 2 48 266 19 237 6.26e-92 271
MS.gene046990.t1 MTR_3g111620 54.626 227 98 3 44 267 22 246 5.02e-88 262
MS.gene046990.t1 MTR_8g075550 54.310 232 98 3 48 271 27 258 1.38e-84 255
MS.gene046990.t1 MTR_4g073720 51.220 246 101 5 23 266 11 239 6.77e-82 250
MS.gene046990.t1 MTR_1g021945 54.585 229 97 3 44 268 21 246 2.02e-81 245
MS.gene046990.t1 MTR_1g025420 52.439 246 108 5 26 266 4 245 8.69e-81 246
MS.gene046990.t1 MTR_1g025420 52.439 246 108 5 26 266 4 245 1.28e-80 244
MS.gene046990.t1 MTR_5g022350 51.417 247 98 5 23 267 17 243 1.47e-80 245
MS.gene046990.t1 MTR_8g075510 51.807 249 97 6 22 267 16 244 2.82e-80 242
MS.gene046990.t1 MTR_7g062610 52.018 223 102 2 48 267 22 242 3.55e-80 242
MS.gene046990.t1 MTR_3g068015 50.407 246 115 4 27 267 5 248 3.62e-80 242
MS.gene046990.t1 MTR_8g075510 51.613 248 97 6 22 266 16 243 1.99e-79 242
MS.gene046990.t1 MTR_5g059200 49.799 249 118 4 23 271 3 244 1.23e-78 239
MS.gene046990.t1 MTR_8g037890 52.609 230 102 4 43 267 20 247 4.78e-78 239
MS.gene046990.t1 MTR_5g022310 49.206 252 110 5 23 267 11 251 2.05e-76 233
MS.gene046990.t1 MTR_5g022310 49.206 252 110 5 23 267 11 251 3.64e-76 234
MS.gene046990.t1 MTR_7g102380 52.232 224 101 5 49 268 21 242 6.23e-75 229
MS.gene046990.t1 MTR_3g114030 50.218 229 109 4 48 271 6 234 1.79e-73 224
MS.gene046990.t1 MTR_1g062590 50.673 223 104 5 49 267 22 242 1.64e-72 222
MS.gene046990.t1 MTR_8g056820 50.661 227 105 4 46 267 23 247 6.01e-72 221
MS.gene046990.t1 MTR_4g073730 49.603 252 117 6 21 267 2 248 9.90e-71 219
MS.gene046990.t1 MTR_6g009480 47.345 226 112 5 49 268 29 253 1.12e-70 219
MS.gene046990.t1 MTR_4g073730 49.603 252 117 6 21 267 2 248 1.60e-70 220
MS.gene046990.t1 MTR_2g069660 47.390 249 117 5 23 267 5 243 3.16e-70 216
MS.gene046990.t1 MTR_1g062370 50.220 227 107 5 45 267 18 242 4.57e-70 216
MS.gene046990.t1 MTR_1g062340 49.780 227 108 5 45 267 18 242 1.45e-69 215
MS.gene046990.t1 MTR_1g062350 49.780 227 108 5 45 267 18 242 2.87e-69 214
MS.gene046990.t1 MTR_1g062660 48.458 227 111 5 47 269 20 244 1.13e-68 213
MS.gene046990.t1 MTR_2g068030 45.306 245 127 5 27 266 1 243 6.19e-68 211
MS.gene046990.t1 MTR_1g062630 47.826 230 114 5 45 270 18 245 1.35e-67 211
MS.gene046990.t1 MTR_2g067980 47.436 234 114 5 41 267 16 247 3.90e-64 216
MS.gene046990.t1 MTR_2g068655 43.651 252 133 6 27 271 7 256 2.07e-62 199
MS.gene046990.t1 MTR_4g063630 44.397 232 122 5 41 266 21 251 3.17e-61 194
MS.gene046990.t1 MTR_1g062690 44.889 225 98 5 45 267 18 218 4.21e-57 182
MS.gene046990.t1 MTR_5g010635 40.889 225 110 7 46 267 21 225 2.77e-48 160
MS.gene046990.t1 MTR_5g010640 40.167 239 113 9 41 267 16 236 1.80e-47 158
MS.gene046990.t1 MTR_2g067970 45.902 183 89 7 92 267 3 182 5.10e-47 168
MS.gene046990.t1 MTR_8g096900 38.400 250 119 11 23 267 29 248 3.22e-45 152
MS.gene046990.t1 MTR_8g089020 48.936 141 69 2 122 262 22 159 5.57e-43 144
MS.gene046990.t1 MTR_5g022350 48.077 156 64 4 23 176 82 222 6.24e-41 141
MS.gene046990.t1 MTR_2g067990 37.500 224 109 9 48 267 26 222 7.65e-40 147
MS.gene046990.t1 MTR_2g063150 33.659 205 128 5 49 249 34 234 5.34e-36 129
MS.gene046990.t1 MTR_5g023850 36.199 221 99 7 55 268 32 217 4.02e-35 126
MS.gene046990.t1 MTR_1g062390 31.873 251 147 7 24 267 5 238 7.82e-30 112
MS.gene046990.t1 MTR_7g076360 33.649 211 77 4 48 257 7 155 2.20e-28 107
MS.gene046990.t1 MTR_8g096910 41.379 145 67 5 23 164 3 132 1.04e-27 105
MS.gene046990.t1 MTR_8g096920 42.623 122 59 4 46 164 16 129 1.26e-24 97.4
MS.gene046990.t1 MTR_3g081550 42.553 94 51 2 133 223 16 109 1.62e-15 71.2
MS.gene046990.t1 MTR_5g068670 48.750 80 37 2 86 163 12 89 3.66e-14 68.2
MS.gene046990.t1 MTR_1g062640 31.507 146 90 5 46 188 10 148 4.74e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046990.t1 AT1G18250 77.974 227 50 0 45 271 18 244 2.73e-135 382
MS.gene046990.t1 AT1G18250 77.434 226 51 0 46 271 18 243 2.77e-134 379
MS.gene046990.t1 AT1G73620 74.336 226 58 0 46 271 39 264 2.56e-130 370
MS.gene046990.t1 AT1G75050 53.785 251 103 4 22 270 7 246 1.82e-86 258
MS.gene046990.t1 AT1G75030 55.947 227 95 3 47 270 22 246 2.44e-85 255
MS.gene046990.t1 AT1G75040 54.839 248 95 6 22 267 7 239 9.57e-83 248
MS.gene046990.t1 AT1G77700 49.442 269 114 7 9 271 24 276 2.76e-82 250
MS.gene046990.t1 AT1G77700 51.321 265 105 8 9 266 24 271 1.62e-81 248
MS.gene046990.t1 AT1G19320 57.339 218 84 3 55 266 32 246 6.57e-81 244
MS.gene046990.t1 AT4G38660 51.754 228 103 3 42 267 1 223 9.20e-81 246
MS.gene046990.t1 AT4G38660 50.204 245 108 4 25 267 13 245 1.87e-80 246
MS.gene046990.t1 AT1G77700 54.911 224 93 5 44 266 83 299 3.22e-79 243
MS.gene046990.t1 AT1G75800 54.626 227 96 5 48 267 22 248 1.24e-77 238
MS.gene046990.t1 AT1G20030 54.667 225 95 5 50 267 4 228 1.06e-76 235
MS.gene046990.t1 AT1G20030 54.667 225 95 5 50 267 21 245 1.30e-76 235
MS.gene046990.t1 AT4G24180 50.424 236 102 5 46 271 30 260 8.64e-75 229
MS.gene046990.t1 AT4G24180 50.424 236 102 5 46 271 25 255 9.16e-75 229
MS.gene046990.t1 AT4G24180 50.862 232 99 5 46 267 30 256 3.35e-74 229
MS.gene046990.t1 AT4G24180 50.862 232 99 5 46 267 25 251 4.49e-74 229
MS.gene046990.t1 AT5G02140 50.000 224 106 4 48 267 20 241 2.66e-73 226
MS.gene046990.t1 AT5G02140 48.485 231 113 4 41 267 13 241 3.86e-73 224
MS.gene046990.t1 AT5G40020 48.889 225 109 3 50 269 27 250 5.52e-73 224
MS.gene046990.t1 AT4G36010 51.515 231 101 5 47 267 21 250 1.24e-72 225
MS.gene046990.t1 AT4G36010 51.515 231 101 5 47 267 21 250 1.24e-72 225
MS.gene046990.t1 AT2G17860 48.101 237 115 5 43 271 17 253 2.54e-72 222
MS.gene046990.t1 AT5G24620 48.536 239 114 4 42 271 18 256 2.99e-70 223
MS.gene046990.t1 AT5G24620 48.536 239 114 4 42 271 73 311 5.66e-70 223
MS.gene046990.t1 AT5G24620 48.536 239 114 4 42 271 94 332 7.97e-70 223
MS.gene046990.t1 AT4G38670 48.413 252 115 6 22 267 5 247 2.29e-68 213
MS.gene046990.t1 AT4G38670 48.413 252 115 6 22 267 5 247 2.29e-68 213
MS.gene046990.t1 AT4G38670 51.339 224 103 5 50 267 8 231 9.00e-68 211
MS.gene046990.t1 AT4G24180 49.309 217 95 5 46 252 30 241 1.52e-65 207
MS.gene046990.t1 AT4G24180 49.309 217 95 5 46 252 25 236 1.82e-65 207
MS.gene046990.t1 AT2G28790 46.789 218 108 6 55 266 58 273 2.41e-62 197
MS.gene046990.t1 AT2G28790 45.946 222 112 6 51 266 29 248 2.85e-62 196
MS.gene046990.t1 AT5G38280 43.802 242 125 7 33 267 13 250 3.53e-59 199
MS.gene046990.t1 AT5G38280 43.802 242 125 7 33 267 13 250 4.03e-59 199
MS.gene046990.t1 AT4G11650 41.991 231 112 6 42 270 16 226 1.39e-55 179
MS.gene046990.t1 AT4G36000 58.503 147 51 3 124 268 1 139 1.27e-54 176
MS.gene046990.t1 AT4G36000 58.503 147 51 3 124 268 1 139 1.27e-54 176
MS.gene046990.t1 AT4G18253 39.583 240 134 5 33 270 11 241 4.63e-51 167
MS.gene046990.t1 AT4G18250 35.227 264 151 8 10 267 23 272 6.55e-40 147
MS.gene046990.t1 AT1G70250 37.991 229 128 8 48 267 144 367 1.22e-39 146
MS.gene046990.t1 AT5G24620 52.800 125 53 3 153 271 15 139 3.04e-35 128
MS.gene046990.t1 AT2G24810 58.442 77 32 0 190 266 116 192 1.13e-24 97.8

Find 98 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAATGGTCAGGCCGTTTC+TGG 0.068116 4.3:+403803 MS.gene046990:CDS
CCGGCACCGGGTTGGATTGC+TGG 0.183097 4.3:-403712 None:intergenic
TGAATAAGCAGTGGGCTTGC+AGG 0.307584 4.3:-404199 None:intergenic
GACCTCACCTGCAACCCTAC+TGG 0.350758 4.3:-404081 None:intergenic
ATTACACCTTTCAAGGGATC+TGG 0.363950 4.3:+404012 MS.gene046990:CDS
CGGTGCCGGAAAACCCATTC+TGG 0.376903 4.3:+403726 MS.gene046990:CDS
GATTTCCATTACACCTTTCA+AGG 0.380242 4.3:+404005 MS.gene046990:CDS
GAAGCCGCCGCGGGCCAGAA+TGG 0.391505 4.3:-403740 None:intergenic
ACAATGGTCAGGCCGTTTCT+GGG 0.391880 4.3:+403804 MS.gene046990:CDS
TGAAGGGAATAAGCTTTGTT+TGG 0.395281 4.3:-403772 None:intergenic
TAAGCATAAGAGTAAGCCTT+TGG 0.402209 4.3:-404243 None:intergenic
GGTTGGATTGCTGGCCACAC+TGG 0.402359 4.3:-403703 None:intergenic
AAGCCGCCGCGGGCCAGAAT+GGG 0.420312 4.3:-403739 None:intergenic
GATGTGCCCAGTAGGGTTGC+AGG 0.421685 4.3:+404074 MS.gene046990:CDS
CGCAGTCTCCGGTGGCGCAA+TGG 0.424632 4.3:-403864 None:intergenic
TTGAAAGGTGTAATGGAAAT+CGG 0.429153 4.3:-404003 None:intergenic
CAGTGGGCTTGCAGGTCTGT+GGG 0.433412 4.3:-404191 None:intergenic
ATTGGTGCAAGTAGCAATAC+TGG 0.439699 4.3:-404277 None:intergenic
GGGAATAAGCTTTGTTTGGT+GGG 0.442251 4.3:-403768 None:intergenic
ACCTCACCTGCAACCCTACT+GGG 0.443228 4.3:-404080 None:intergenic
GGCCACGGCCATTGCGCCAC+CGG 0.444546 4.3:+403856 MS.gene046990:CDS
CTCCGGTGGCGCAATGGCCG+TGG 0.450871 4.3:-403858 None:intergenic
ACCATTGTGGTGGGACTTGA+AGG 0.456165 4.3:-403789 None:intergenic
GTTGGATTGCTGGCCACACT+GGG 0.457650 4.3:-403702 None:intergenic
GGATTGCTGGCCACACTGGG+TGG 0.462751 4.3:-403699 None:intergenic
TACCTGGAGGGTATGCGATT+AGG 0.464838 4.3:-403492 None:intergenic
GCAGTGGGCTTGCAGGTCTG+TGG 0.469723 4.3:-404192 None:intergenic
GGCTGCACCTTCGACGCATC+AGG 0.474004 4.3:+403835 MS.gene046990:CDS
GAAGAAGAGAGCGGTGAAGA+TGG 0.478141 4.3:-403461 None:intergenic
AGATCCCTTGAAAGGTGTAA+TGG 0.479072 4.3:-404010 None:intergenic
GAGAGATCCGCCGCAGTCTC+CGG 0.481610 4.3:-403875 None:intergenic
AAGCATAAGAGTAAGCCTTT+GGG 0.484229 4.3:-404242 None:intergenic
GGCCGTTTCTGGGGCCGTCA+CGG 0.495582 4.3:+403814 MS.gene046990:CDS
AGCCGTGACGGCCCCAGAAA+CGG 0.498382 4.3:-403816 None:intergenic
TATTGCTGCACTGGTAACTT+TGG 0.498988 4.3:+404165 MS.gene046990:CDS
GTGAACTCAGCGAGTGTGGC+TGG 0.500794 4.3:-403925 None:intergenic
CCAGCAATCCAACCCGGTGC+CGG 0.501469 4.3:+403712 MS.gene046990:CDS
GTGCTGCTTTCAACTCTCCT+AGG 0.501482 4.3:+404142 MS.gene046990:CDS
AGGGAATAAGCTTTGTTTGG+TGG 0.502787 4.3:-403769 None:intergenic
TCTCTCTTCTGCAACGGCAT+AGG 0.508531 4.3:+403892 MS.gene046990:CDS
TTCCTAATCGCATACCCTCC+AGG 0.509059 4.3:+403490 MS.gene046990:CDS
TCTCCTAGGTATTGCTGCAC+TGG 0.513261 4.3:+404156 MS.gene046990:CDS
GCCCAGTAGGGTTGCAGGTG+AGG 0.513868 4.3:+404079 MS.gene046990:CDS
CAAGTCCCACCACAATGGTC+AGG 0.514556 4.3:+403793 MS.gene046990:CDS
TCTGGAAAATGTAGCTATGC+TGG 0.515580 4.3:+404030 MS.gene046990:CDS
GTGTGAGAGAGAAGAGAAGG+AGG 0.516122 4.3:-403538 None:intergenic
CTCTTCTGCAACGGCATAGG+CGG 0.529119 4.3:+403895 MS.gene046990:CDS
ACTCAGCGAGTGTGGCTGGT+GGG 0.531396 4.3:-403921 None:intergenic
AATAATAATAATAAAATACC+TGG 0.534990 4.3:-403508 None:intergenic
AGTGATCATGTAACTAGCAT+TGG 0.535613 4.3:-404295 None:intergenic
CTCAGCGAGTGTGGCTGGTG+GGG 0.539267 4.3:-403920 None:intergenic
CTTAACTTGATGTGCCCAGT+AGG 0.539656 4.3:+404066 MS.gene046990:CDS
TGGGAGGTTGAAGCCGCCGC+GGG 0.541485 4.3:-403749 None:intergenic
ACACTCGCTGAGTTCACATT+CGG 0.547514 4.3:+403931 MS.gene046990:CDS
GTGCAAGTAGCAATACTGGT+AGG 0.548800 4.3:-404273 None:intergenic
AAGATTCTTGAATAAGCAGT+GGG 0.550542 4.3:-404207 None:intergenic
CGTCGAAGGTGCAGCCGTGA+CGG 0.550989 4.3:-403828 None:intergenic
GTAAGTTGTAACCGTCGACC+AGG 0.554402 4.3:-403981 None:intergenic
AACTCAGCGAGTGTGGCTGG+TGG 0.563622 4.3:-403922 None:intergenic
GATTGCTGGCCACACTGGGT+GGG 0.567882 4.3:-403698 None:intergenic
AGATTTCTATGACGTCAGCC+TGG 0.567905 4.3:+403963 MS.gene046990:CDS
CAATGGTCAGGCCGTTTCTG+GGG 0.570580 4.3:+403805 MS.gene046990:CDS
CTTCAAAACTGCTTGCCCAA+AGG 0.572482 4.3:+404227 MS.gene046990:CDS
GAAGATTCTTGAATAAGCAG+TGG 0.575322 4.3:-404208 None:intergenic
CATTGCGCCACCGGAGACTG+CGG 0.577164 4.3:+403865 MS.gene046990:CDS
TGTGTGTGAGAGAGAAGAGA+AGG 0.579266 4.3:-403541 None:intergenic
GTGTGGCCAGCAATCCAACC+CGG 0.580526 4.3:+403706 MS.gene046990:CDS
ATGATCAACGGCGGTGACGA+GGG 0.581144 4.3:-404323 None:intergenic
GCCGTGGCCTGATGCGTCGA+AGG 0.582247 4.3:-403842 None:intergenic
TTAACTTGATGTGCCCAGTA+GGG 0.582603 4.3:+404067 MS.gene046990:CDS
AATAAGCTTTGTTTGGTGGG+AGG 0.584207 4.3:-403765 None:intergenic
ACCTTCGACGCATCAGGCCA+CGG 0.592438 4.3:+403841 MS.gene046990:CDS
ATTTCCATTACACCTTTCAA+GGG 0.595357 4.3:+404006 MS.gene046990:CDS
GTGGGAGGTTGAAGCCGCCG+CGG 0.600609 4.3:-403750 None:intergenic
TATGACGTCAGCCTGGTCGA+CGG 0.603237 4.3:+403970 MS.gene046990:CDS
GATGATCAACGGCGGTGACG+AGG 0.606071 4.3:-404324 None:intergenic
GGCGGATCTCTCTTCTGCAA+CGG 0.609526 4.3:+403886 MS.gene046990:CDS
TGCAAGTAGCAATACTGGTA+GGG 0.611972 4.3:-404272 None:intergenic
AAACGGCCTGACCATTGTGG+TGG 0.613091 4.3:-403799 None:intergenic
TGCGCCACCGGAGACTGCGG+CGG 0.616529 4.3:+403868 MS.gene046990:CDS
AGTGGGCTTGCAGGTCTGTG+GGG 0.617801 4.3:-404190 None:intergenic
TTACCAGTGCAGCAATACCT+AGG 0.621497 4.3:-404159 None:intergenic
AGATCCGCCGCAGTCTCCGG+TGG 0.621709 4.3:-403872 None:intergenic
CGTGACAAGAAGCAAGTGGT+GGG 0.622854 4.3:+404105 MS.gene046990:CDS
CAGAAACGGCCTGACCATTG+TGG 0.626293 4.3:-403802 None:intergenic
AACGGCCTGACCATTGTGGT+GGG 0.629227 4.3:-403798 None:intergenic
AATAATAATAAAATACCTGG+AGG 0.629567 4.3:-403505 None:intergenic
GAATGTGAACTCAGCGAGTG+TGG 0.633528 4.3:-403929 None:intergenic
ACGTGACAAGAAGCAAGTGG+TGG 0.639156 4.3:+404104 MS.gene046990:CDS
GGAAAACCCATTCTGGCCCG+CGG 0.640848 4.3:+403733 MS.gene046990:CDS
CCCTTCAAGTCCCACCACAA+TGG 0.642784 4.3:+403788 MS.gene046990:CDS
AAACCCATTCTGGCCCGCGG+CGG 0.643152 4.3:+403736 MS.gene046990:CDS
GAAAGCAGCGAAGAAGAGAG+CGG 0.656778 4.3:-403470 None:intergenic
ATAATAATAAAATACCTGGA+GGG 0.657796 4.3:-403504 None:intergenic
GTCACGTGACAAGAAGCAAG+TGG 0.679782 4.3:+404101 MS.gene046990:CDS
ACAAGTGTTCCCACCCAGTG+TGG 0.681402 4.3:+403689 MS.gene046990:CDS
CCATTGTGGTGGGACTTGAA+GGG 0.705505 4.3:-403788 None:intergenic
TGAAGATAGATGATCAACGG+CGG 0.740375 4.3:-404332 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAATAAAATACC+TGG - chr4.3:403511-403530 None:intergenic 10.0%
!! AATAATAATAAAATACCTGG+AGG - chr4.3:403508-403527 None:intergenic 20.0%
!! ATAATAATAAAATACCTGGA+GGG - chr4.3:403507-403526 None:intergenic 20.0%
! AGAAACGACAAATTAAGTAA+CGG - chr4.3:403610-403629 None:intergenic 25.0%
!!! ATTTTAACAAACAGTAGTGA+AGG + chr4.3:403636-403655 MS.gene046990:intron 25.0%
AAGATTCTTGAATAAGCAGT+GGG - chr4.3:404210-404229 None:intergenic 30.0%
ATTTCCATTACACCTTTCAA+GGG + chr4.3:404006-404025 MS.gene046990:CDS 30.0%
! TTGAAAGGTGTAATGGAAAT+CGG - chr4.3:404006-404025 None:intergenic 30.0%
AAGCATAAGAGTAAGCCTTT+GGG - chr4.3:404245-404264 None:intergenic 35.0%
AGTGATCATGTAACTAGCAT+TGG - chr4.3:404298-404317 None:intergenic 35.0%
GAAGATTCTTGAATAAGCAG+TGG - chr4.3:404211-404230 None:intergenic 35.0%
GATTTCCATTACACCTTTCA+AGG + chr4.3:404005-404024 MS.gene046990:CDS 35.0%
TAAGCATAAGAGTAAGCCTT+TGG - chr4.3:404246-404265 None:intergenic 35.0%
!! TGAAGGGAATAAGCTTTGTT+TGG - chr4.3:403775-403794 None:intergenic 35.0%
ATTACACCTTTCAAGGGATC+TGG + chr4.3:404012-404031 MS.gene046990:CDS 40.0%
ATTGGTGCAAGTAGCAATAC+TGG - chr4.3:404280-404299 None:intergenic 40.0%
TCTGGAAAATGTAGCTATGC+TGG + chr4.3:404030-404049 MS.gene046990:CDS 40.0%
TGCAAGTAGCAATACTGGTA+GGG - chr4.3:404275-404294 None:intergenic 40.0%
! AGATCCCTTGAAAGGTGTAA+TGG - chr4.3:404013-404032 None:intergenic 40.0%
! CATTTTCCAGATCCCTTGAA+AGG - chr4.3:404021-404040 None:intergenic 40.0%
! TATTGCTGCACTGGTAACTT+TGG + chr4.3:404165-404184 MS.gene046990:CDS 40.0%
! TTAACTTGATGTGCCCAGTA+GGG + chr4.3:404067-404086 MS.gene046990:CDS 40.0%
!! AATAAGCTTTGTTTGGTGGG+AGG - chr4.3:403768-403787 None:intergenic 40.0%
!! AGGGAATAAGCTTTGTTTGG+TGG - chr4.3:403772-403791 None:intergenic 40.0%
!! GGGAATAAGCTTTGTTTGGT+GGG - chr4.3:403771-403790 None:intergenic 40.0%
ACACTCGCTGAGTTCACATT+CGG + chr4.3:403931-403950 MS.gene046990:CDS 45.0%
AGATTTCTATGACGTCAGCC+TGG + chr4.3:403963-403982 MS.gene046990:CDS 45.0%
CTTCAAAACTGCTTGCCCAA+AGG + chr4.3:404227-404246 MS.gene046990:CDS 45.0%
GTGCAAGTAGCAATACTGGT+AGG - chr4.3:404276-404295 None:intergenic 45.0%
TCTCACACACACACAGAAAG+CGG + chr4.3:403553-403572 MS.gene046990:CDS 45.0%
TGTGTGTGAGAGAGAAGAGA+AGG - chr4.3:403544-403563 None:intergenic 45.0%
TTACCAGTGCAGCAATACCT+AGG - chr4.3:404162-404181 None:intergenic 45.0%
! CTTAACTTGATGTGCCCAGT+AGG + chr4.3:404066-404085 MS.gene046990:CDS 45.0%
ACAATGGTCAGGCCGTTTCT+GGG + chr4.3:403804-403823 MS.gene046990:CDS 50.0%
ACGTGACAAGAAGCAAGTGG+TGG + chr4.3:404104-404123 MS.gene046990:CDS 50.0%
CGTGACAAGAAGCAAGTGGT+GGG + chr4.3:404105-404124 MS.gene046990:CDS 50.0%
GAAAGCAGCGAAGAAGAGAG+CGG - chr4.3:403473-403492 None:intergenic 50.0%
GAAGAAGAGAGCGGTGAAGA+TGG - chr4.3:403464-403483 None:intergenic 50.0%
GAATGTGAACTCAGCGAGTG+TGG - chr4.3:403932-403951 None:intergenic 50.0%
GTAAGTTGTAACCGTCGACC+AGG - chr4.3:403984-404003 None:intergenic 50.0%
GTCACGTGACAAGAAGCAAG+TGG + chr4.3:404101-404120 MS.gene046990:CDS 50.0%
GTGTGAGAGAGAAGAGAAGG+AGG - chr4.3:403541-403560 None:intergenic 50.0%
TCTCTCTTCTGCAACGGCAT+AGG + chr4.3:403892-403911 MS.gene046990:CDS 50.0%
TTCCTAATCGCATACCCTCC+AGG + chr4.3:403490-403509 MS.gene046990:CDS 50.0%
! ACCATTGTGGTGGGACTTGA+AGG - chr4.3:403792-403811 None:intergenic 50.0%
! CCATTGTGGTGGGACTTGAA+GGG - chr4.3:403791-403810 None:intergenic 50.0%
! TACCTGGAGGGTATGCGATT+AGG - chr4.3:403495-403514 None:intergenic 50.0%
! TCTCCTAGGTATTGCTGCAC+TGG + chr4.3:404156-404175 MS.gene046990:CDS 50.0%
! TGAATAAGCAGTGGGCTTGC+AGG - chr4.3:404202-404221 None:intergenic 50.0%
!! GTGCTGCTTTCAACTCTCCT+AGG + chr4.3:404142-404161 MS.gene046990:CDS 50.0%
AAACGGCCTGACCATTGTGG+TGG - chr4.3:403802-403821 None:intergenic 55.0%
AACGGCCTGACCATTGTGGT+GGG - chr4.3:403801-403820 None:intergenic 55.0%
ACAAGTGTTCCCACCCAGTG+TGG + chr4.3:403689-403708 MS.gene046990:CDS 55.0%
ACCTCACCTGCAACCCTACT+GGG - chr4.3:404083-404102 None:intergenic 55.0%
CAAGTCCCACCACAATGGTC+AGG + chr4.3:403793-403812 MS.gene046990:CDS 55.0%
CAATGGTCAGGCCGTTTCTG+GGG + chr4.3:403805-403824 MS.gene046990:CDS 55.0%
CACAATGGTCAGGCCGTTTC+TGG + chr4.3:403803-403822 MS.gene046990:CDS 55.0%
CAGAAACGGCCTGACCATTG+TGG - chr4.3:403805-403824 None:intergenic 55.0%
CCCTTCAAGTCCCACCACAA+TGG + chr4.3:403788-403807 MS.gene046990:CDS 55.0%
CTCTTCTGCAACGGCATAGG+CGG + chr4.3:403895-403914 MS.gene046990:CDS 55.0%
GGCGGATCTCTCTTCTGCAA+CGG + chr4.3:403886-403905 MS.gene046990:CDS 55.0%
GTTGGATTGCTGGCCACACT+GGG - chr4.3:403705-403724 None:intergenic 55.0%
TATGACGTCAGCCTGGTCGA+CGG + chr4.3:403970-403989 MS.gene046990:CDS 55.0%
!! AGAATGGGTTTTCCGGCACC+GGG - chr4.3:403727-403746 None:intergenic 55.0%
!! CAGAATGGGTTTTCCGGCAC+CGG - chr4.3:403728-403747 None:intergenic 55.0%
AACTCAGCGAGTGTGGCTGG+TGG - chr4.3:403925-403944 None:intergenic 60.0%
ACCTTCGACGCATCAGGCCA+CGG + chr4.3:403841-403860 MS.gene046990:CDS 60.0%
ACTCAGCGAGTGTGGCTGGT+GGG - chr4.3:403924-403943 None:intergenic 60.0%
GACCTCACCTGCAACCCTAC+TGG - chr4.3:404084-404103 None:intergenic 60.0%
GATGTGCCCAGTAGGGTTGC+AGG + chr4.3:404074-404093 MS.gene046990:CDS 60.0%
GATTGCTGGCCACACTGGGT+GGG - chr4.3:403701-403720 None:intergenic 60.0%
GGAAAACCCATTCTGGCCCG+CGG + chr4.3:403733-403752 MS.gene046990:CDS 60.0%
GGTTGGATTGCTGGCCACAC+TGG - chr4.3:403706-403725 None:intergenic 60.0%
GTGAACTCAGCGAGTGTGGC+TGG - chr4.3:403928-403947 None:intergenic 60.0%
GTGTGGCCAGCAATCCAACC+CGG + chr4.3:403706-403725 MS.gene046990:CDS 60.0%
! AGTGGGCTTGCAGGTCTGTG+GGG - chr4.3:404193-404212 None:intergenic 60.0%
! CAGTGGGCTTGCAGGTCTGT+GGG - chr4.3:404194-404213 None:intergenic 60.0%
! CGGTGCCGGAAAACCCATTC+TGG + chr4.3:403726-403745 MS.gene046990:CDS 60.0%
!! GCGGGCCAGAATGGGTTTTC+CGG - chr4.3:403734-403753 None:intergenic 60.0%
AAACCCATTCTGGCCCGCGG+CGG + chr4.3:403736-403755 MS.gene046990:CDS 65.0%
AGCCGTGACGGCCCCAGAAA+CGG - chr4.3:403819-403838 None:intergenic 65.0%
CATTGCGCCACCGGAGACTG+CGG + chr4.3:403865-403884 MS.gene046990:CDS 65.0%
CCAGCAATCCAACCCGGTGC+CGG + chr4.3:403712-403731 MS.gene046990:CDS 65.0%
CTCAGCGAGTGTGGCTGGTG+GGG - chr4.3:403923-403942 None:intergenic 65.0%
GAGAGATCCGCCGCAGTCTC+CGG - chr4.3:403878-403897 None:intergenic 65.0%
GCCCAGTAGGGTTGCAGGTG+AGG + chr4.3:404079-404098 MS.gene046990:CDS 65.0%
GGATTGCTGGCCACACTGGG+TGG - chr4.3:403702-403721 None:intergenic 65.0%
GGCTGCACCTTCGACGCATC+AGG + chr4.3:403835-403854 MS.gene046990:CDS 65.0%
! CGTCGAAGGTGCAGCCGTGA+CGG - chr4.3:403831-403850 None:intergenic 65.0%
! GCAGTGGGCTTGCAGGTCTG+TGG - chr4.3:404195-404214 None:intergenic 65.0%
!! TGGGTTTTCCGGCACCGGGT+TGG - chr4.3:403723-403742 None:intergenic 65.0%
AAGCCGCCGCGGGCCAGAAT+GGG - chr4.3:403742-403761 None:intergenic 70.0%
AGATCCGCCGCAGTCTCCGG+TGG - chr4.3:403875-403894 None:intergenic 70.0%
CGCAGTCTCCGGTGGCGCAA+TGG - chr4.3:403867-403886 None:intergenic 70.0%
GCCGTGGCCTGATGCGTCGA+AGG - chr4.3:403845-403864 None:intergenic 70.0%
GTGGGAGGTTGAAGCCGCCG+CGG - chr4.3:403753-403772 None:intergenic 70.0%
TGGGAGGTTGAAGCCGCCGC+GGG - chr4.3:403752-403771 None:intergenic 70.0%
! CCGGCACCGGGTTGGATTGC+TGG - chr4.3:403715-403734 None:intergenic 70.0%
!! GGCCGTTTCTGGGGCCGTCA+CGG + chr4.3:403814-403833 MS.gene046990:CDS 70.0%
CTCCGGTGGCGCAATGGCCG+TGG - chr4.3:403861-403880 None:intergenic 75.0%
GAAGCCGCCGCGGGCCAGAA+TGG - chr4.3:403743-403762 None:intergenic 75.0%
GGCCACGGCCATTGCGCCAC+CGG + chr4.3:403856-403875 MS.gene046990:CDS 75.0%
TGCGCCACCGGAGACTGCGG+CGG + chr4.3:403868-403887 MS.gene046990:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 403451 404341 403451 ID=MS.gene046990
chr4.3 mRNA 403451 404341 403451 ID=MS.gene046990.t1;Parent=MS.gene046990
chr4.3 exon 403451 403574 403451 ID=MS.gene046990.t1.exon1;Parent=MS.gene046990.t1
chr4.3 CDS 403451 403574 403451 ID=cds.MS.gene046990.t1;Parent=MS.gene046990.t1
chr4.3 exon 403650 404341 403650 ID=MS.gene046990.t1.exon2;Parent=MS.gene046990.t1
chr4.3 CDS 403650 404341 403650 ID=cds.MS.gene046990.t1;Parent=MS.gene046990.t1
Gene Sequence

>MS.gene046990

ATGGCTGCTTCCATCTTCACCGCTCTCTTCTTCGCTGCTTTCCTAATCGCATACCCTCCAGGTATTTTATTATTATTATTATTATTTCCTCCTTCTCTTCTCTCTCACACACACACAGAAAGCGGTTTGTGAGAGATATATAGTACATTTATTACACCGTTACTTAATTTGTCGTTTCTTGTTTGATTTTAACAAACAGTAGTGAAGGTATCAGCAGCAGCATCAGTAGTATTTTACAACAAGTGTTCCCACCCAGTGTGGCCAGCAATCCAACCCGGTGCCGGAAAACCCATTCTGGCCCGCGGCGGCTTCAACCTCCCACCAAACAAAGCTTATTCCCTTCAAGTCCCACCACAATGGTCAGGCCGTTTCTGGGGCCGTCACGGCTGCACCTTCGACGCATCAGGCCACGGCCATTGCGCCACCGGAGACTGCGGCGGATCTCTCTTCTGCAACGGCATAGGCGGAACCCCACCAGCCACACTCGCTGAGTTCACATTCGGAAAAGATCTAGATTTCTATGACGTCAGCCTGGTCGACGGTTACAACTTACCGATTTCCATTACACCTTTCAAGGGATCTGGAAAATGTAGCTATGCTGGCTGTGTGAGTGATCTTAACTTGATGTGCCCAGTAGGGTTGCAGGTGAGGTCACGTGACAAGAAGCAAGTGGTGGGTTGTAGAAGTGCTTGTGCTGCTTTCAACTCTCCTAGGTATTGCTGCACTGGTAACTTTGGTACCCCACAGACCTGCAAGCCCACTGCTTATTCAAGAATCTTCAAAACTGCTTGCCCAAAGGCTTACTCTTATGCTTATGATGACCCTACCAGTATTGCTACTTGCACCAATGCTAGTTACATGATCACTTTCTGCCCTCGTCACCGCCGTTGA
Protein sequence

>MS.gene046990.t1

MAASIFTALFFAAFLIAYPPGILLLLLLFPPSLLSHTHTESVVKVSAAASVVFYNKCSHPVWPAIQPGAGKPILARGGFNLPPNKAYSLQVPPQWSGRFWGRHGCTFDASGHGHCATGDCGGSLFCNGIGGTPPATLAEFTFGKDLDFYDVSLVDGYNLPISITPFKGSGKCSYAGCVSDLNLMCPVGLQVRSRDKKQVVGCRSACAAFNSPRYCCTGNFGTPQTCKPTAYSRIFKTACPKAYSYAYDDPTSIATCTNASYMITFCPRHRR