AlfalfaGEDB | MS.gene61094

M. sativa cultivar XinJiangDaYe / MS.gene61094

KEGG: -
GO: -
PFAM: PF00314.20

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61094.t1	XP_013456089.1	96.8	253	7	1	1	253	1	252	1.50E-145	525.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61094.t1	Q41350	65.3	251	83	1	7	253	2	252	1.8e-99	363.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61094.t1	I3SX98	96.8	253	7	1	1	253	1	252	1.1e-145	525.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049298	MS.gene61094	0.843529	1.32E-58	-1.69E-46
MS.gene050707	MS.gene61094	0.822789	1.96E-53	-1.69E-46
MS.gene051914	MS.gene61094	0.870011	2.01E-66	-1.69E-46
MS.gene052209	MS.gene61094	0.809866	1.53E-50	-1.69E-46
MS.gene052308	MS.gene61094	0.894981	1.48E-75	-1.69E-46
MS.gene053108	MS.gene61094	0.803492	3.40E-49	-1.69E-46
MS.gene053173	MS.gene61094	0.852467	4.53E-61	-1.69E-46
MS.gene053348	MS.gene61094	0.863121	3.12E-64	-1.69E-46
MS.gene054551	MS.gene61094	0.873017	2.04E-67	-1.69E-46
MS.gene054552	MS.gene61094	0.816653	4.95E-52	-1.69E-46
MS.gene054593	MS.gene61094	0.862476	4.93E-64	-1.69E-46
MS.gene054633	MS.gene61094	0.844419	7.65E-59	-1.69E-46
MS.gene054662	MS.gene61094	0.802235	6.18E-49	-1.69E-46
MS.gene054850	MS.gene61094	0.844579	6.93E-59	-1.69E-46
MS.gene054941	MS.gene61094	0.843993	9.95E-59	-1.69E-46
MS.gene055308	MS.gene61094	0.864801	9.36E-65	-1.69E-46
MS.gene055578	MS.gene61094	0.856144	3.92E-62	-1.69E-46
MS.gene055957	MS.gene61094	0.815178	1.06E-51	-1.69E-46
MS.gene056041	MS.gene61094	0.858271	9.24E-63	-1.69E-46
MS.gene05640	MS.gene61094	0.881806	1.77E-70	-1.69E-46
MS.gene056528	MS.gene61094	0.839674	1.38E-57	-1.69E-46
MS.gene05652	MS.gene61094	0.893942	3.93E-75	-1.69E-46
MS.gene056618	MS.gene61094	0.823431	1.39E-53	-1.69E-46
MS.gene057101	MS.gene61094	0.840138	1.04E-57	-1.69E-46
MS.gene057367	MS.gene61094	0.815546	8.75E-52	-1.69E-46
MS.gene057458	MS.gene61094	0.826326	2.88E-54	-1.69E-46
MS.gene057669	MS.gene61094	0.841906	3.58E-58	-1.69E-46
MS.gene058013	MS.gene61094	0.803675	3.11E-49	-1.69E-46
MS.gene058128	MS.gene61094	0.929545	5.96E-93	-1.69E-46
MS.gene058789	MS.gene61094	0.801602	8.33E-49	-1.69E-46
MS.gene058853	MS.gene61094	0.89592	6.06E-76	-1.69E-46
MS.gene05926	MS.gene61094	0.810188	1.31E-50	-1.69E-46
MS.gene059553	MS.gene61094	0.813857	2.07E-51	-1.69E-46
MS.gene059616	MS.gene61094	0.881859	1.69E-70	-1.69E-46
MS.gene059905	MS.gene61094	0.855494	6.08E-62	-1.69E-46
MS.gene06093	MS.gene61094	0.849112	3.99E-60	-1.69E-46
MS.gene061089	MS.gene61094	0.814019	1.91E-51	-1.69E-46
MS.gene061099	MS.gene61094	0.830668	2.58E-55	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene94553	MS.gene61094	PPI
MS.gene56731	MS.gene61094	PPI
MS.gene61094	MS.gene69123	PPI
MS.gene42714	MS.gene61094	PPI
MS.gene040126	MS.gene61094	PPI
MS.gene056184	MS.gene61094	PPI
MS.gene61094	MS.gene26931	PPI
MS.gene056186	MS.gene61094	PPI
MS.gene61094	MS.gene27345	PPI
MS.gene92395	MS.gene61094	PPI
MS.gene016652	MS.gene61094	PPI
MS.gene61094	MS.gene92397	PPI
MS.gene61094	MS.gene010631	PPI
MS.gene59476	MS.gene61094	PPI
MS.gene61094	MS.gene046990	PPI
MS.gene64778	MS.gene61094	PPI
MS.gene61094	MS.gene92393	PPI
MS.gene24315	MS.gene61094	PPI
MS.gene45764	MS.gene61094	PPI
MS.gene42360	MS.gene61094	PPI
MS.gene61094	MS.gene68072	PPI
MS.gene93762	MS.gene61094	PPI
MS.gene062716	MS.gene61094	PPI
MS.gene20542	MS.gene61094	PPI
MS.gene61094	MS.gene014545	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61094.t1	MTR_4g063630	96.838	253	7	1	1	253	1	252	1.15e-180	496
MS.gene61094.t1	MTR_1g062590	44.534	247	128	6	8	252	2	241	1.49e-64	201
MS.gene61094.t1	MTR_1g062630	45.749	247	125	6	8	252	2	241	1.63e-64	202
MS.gene61094.t1	MTR_4g073720	45.749	247	117	9	13	252	3	239	9.57e-64	202
MS.gene61094.t1	MTR_8g107140	43.548	248	133	5	6	252	3	244	1.17e-62	197
MS.gene61094.t1	MTR_1g025420	43.496	246	129	8	13	252	4	245	2.10e-62	197
MS.gene61094.t1	MTR_1g025420	45.333	225	115	7	32	252	25	245	3.45e-62	198
MS.gene61094.t1	MTR_1g062340	43.460	237	127	5	18	252	10	241	4.58e-62	195
MS.gene61094.t1	MTR_8g036215	41.772	237	131	5	17	252	7	237	7.99e-62	194
MS.gene61094.t1	MTR_6g079580	43.802	242	128	7	13	252	4	239	8.29e-62	194
MS.gene61094.t1	MTR_7g102380	41.803	244	135	5	11	252	2	240	3.00e-61	193
MS.gene61094.t1	MTR_1g062350	43.673	245	129	6	10	252	4	241	4.57e-61	192
MS.gene61094.t1	MTR_1g062370	43.265	245	130	6	10	252	4	241	1.19e-60	191
MS.gene61094.t1	MTR_1g062660	43.038	237	128	5	18	252	10	241	1.41e-60	191
MS.gene61094.t1	MTR_8g075550	45.175	228	114	7	32	252	30	253	8.76e-60	191
MS.gene61094.t1	MTR_6g009480	44.262	244	127	7	13	252	13	251	1.27e-59	190
MS.gene61094.t1	MTR_3g114030	44.889	225	116	7	32	252	9	229	1.40e-59	189
MS.gene61094.t1	MTR_8g037890	43.191	257	130	10	1	252	1	246	4.49e-59	190
MS.gene61094.t1	MTR_5g059200	42.917	240	123	8	14	252	13	239	2.60e-58	187
MS.gene61094.t1	MTR_4g073730	40.329	243	139	6	13	252	8	247	3.00e-58	187
MS.gene61094.t1	MTR_4g073730	40.329	243	139	6	13	252	8	247	7.81e-58	187
MS.gene61094.t1	MTR_3g068015	41.704	223	123	4	32	252	30	247	9.98e-57	182
MS.gene61094.t1	MTR_8g056820	40.650	246	134	8	12	252	8	246	1.55e-56	181
MS.gene61094.t1	MTR_5g022350	45.740	223	106	8	32	252	33	242	8.55e-56	181
MS.gene61094.t1	MTR_5g022310	41.057	246	135	8	13	252	9	250	1.88e-55	179
MS.gene61094.t1	MTR_1g021945	44.828	232	112	9	27	252	23	244	3.83e-55	177
MS.gene61094.t1	MTR_8g075510	41.736	242	123	8	13	252	18	243	4.51e-55	177
MS.gene61094.t1	MTR_5g022310	41.057	246	135	8	13	252	9	250	4.72e-55	179
MS.gene61094.t1	MTR_2g069660	42.735	234	122	7	24	252	16	242	1.00e-54	176
MS.gene61094.t1	MTR_8g075510	41.736	242	123	8	13	252	18	243	1.05e-54	178
MS.gene61094.t1	MTR_7g062610	37.398	246	147	5	8	252	2	241	2.67e-53	173
MS.gene61094.t1	MTR_3g111620	41.048	229	125	7	27	252	24	245	7.56e-53	172
MS.gene61094.t1	MTR_2g068030	41.410	227	121	8	32	253	25	244	2.42e-49	163
MS.gene61094.t1	MTR_1g062690	38.115	244	120	5	10	252	4	217	2.62e-48	159
MS.gene61094.t1	MTR_2g068655	39.827	231	127	8	27	252	28	251	9.45e-48	160
MS.gene61094.t1	MTR_2g067980	41.004	239	127	8	21	252	15	246	1.93e-47	168
MS.gene61094.t1	MTR_5g010635	36.681	229	119	8	26	252	20	224	4.11e-38	134
MS.gene61094.t1	MTR_8g096900	33.607	244	132	9	14	252	29	247	4.95e-37	131
MS.gene61094.t1	MTR_2g063150	34.728	239	139	8	7	234	2	234	2.77e-36	129
MS.gene61094.t1	MTR_5g010640	34.677	248	135	9	12	252	8	235	5.14e-36	128
MS.gene61094.t1	MTR_8g089020	45.038	131	65	3	112	242	31	154	2.38e-33	119
MS.gene61094.t1	MTR_1g062390	32.422	256	142	11	9	252	1	237	5.88e-31	115
MS.gene61094.t1	MTR_2g067990	38.222	225	103	12	32	252	29	221	1.19e-30	120
MS.gene61094.t1	MTR_5g023850	37.766	188	101	9	10	190	9	187	1.14e-29	111
MS.gene61094.t1	MTR_5g022350	48.855	131	59	5	32	160	98	222	1.60e-29	110
MS.gene61094.t1	MTR_2g067970	37.297	185	102	8	75	252	4	181	1.42e-28	114
MS.gene61094.t1	MTR_7g076360	29.956	227	90	6	23	247	1	160	7.87e-25	97.4
MS.gene61094.t1	MTR_8g096910	39.568	139	72	5	8	145	2	129	2.74e-22	90.9
MS.gene61094.t1	MTR_8g096920	35.152	165	92	7	12	175	2	152	8.14e-20	84.0
MS.gene61094.t1	MTR_1g062640	42.742	124	61	4	50	171	32	147	1.75e-18	80.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61094.t1	AT2G28790	64.173	254	85	3	4	253	23	274	3.06e-114	329
MS.gene61094.t1	AT2G28790	65.984	244	77	3	14	253	8	249	1.23e-113	326
MS.gene61094.t1	AT4G38660	43.265	245	127	6	10	252	10	244	2.07e-62	199
MS.gene61094.t1	AT1G73620	45.815	227	116	5	27	252	39	259	2.95e-61	194
MS.gene61094.t1	AT4G38660	44.397	232	117	6	23	252	1	222	5.54e-61	195
MS.gene61094.t1	AT5G40020	42.339	248	137	5	6	252	5	247	2.94e-60	191
MS.gene61094.t1	AT1G77700	43.333	240	118	9	18	252	45	271	9.21e-60	191
MS.gene61094.t1	AT1G20030	45.575	226	115	7	32	252	5	227	1.24e-59	191
MS.gene61094.t1	AT1G77700	43.333	240	118	9	18	252	45	271	1.32e-59	191
MS.gene61094.t1	AT1G20030	45.575	226	115	7	32	252	22	244	1.54e-59	191
MS.gene61094.t1	AT1G18250	44.934	227	118	5	27	252	19	239	1.57e-59	189
MS.gene61094.t1	AT1G75800	44.167	240	127	7	18	252	10	247	2.12e-59	191
MS.gene61094.t1	AT1G18250	44.541	229	120	5	25	252	16	238	3.06e-59	188
MS.gene61094.t1	AT1G75040	43.443	244	126	9	11	252	5	238	3.87e-59	187
MS.gene61094.t1	AT5G24620	41.393	244	135	6	15	252	9	250	8.25e-59	192
MS.gene61094.t1	AT1G19320	41.767	249	131	7	10	252	6	246	2.59e-58	186
MS.gene61094.t1	AT5G24620	41.393	244	135	6	15	252	64	305	2.65e-58	192
MS.gene61094.t1	AT5G24620	41.393	244	135	6	15	252	85	326	3.47e-58	192
MS.gene61094.t1	AT2G17860	40.650	246	135	7	15	252	6	248	4.05e-58	185
MS.gene61094.t1	AT1G77700	44.000	225	112	8	29	252	88	299	1.68e-57	187
MS.gene61094.t1	AT1G75030	42.387	243	134	6	11	252	5	242	2.27e-57	183
MS.gene61094.t1	AT1G75050	43.673	245	128	9	11	252	5	242	3.87e-56	180
MS.gene61094.t1	AT4G38670	39.184	245	140	7	13	252	6	246	4.26e-56	181
MS.gene61094.t1	AT4G38670	39.184	245	140	7	13	252	6	246	4.26e-56	181
MS.gene61094.t1	AT4G36010	42.424	231	117	8	32	252	25	249	3.52e-55	179
MS.gene61094.t1	AT4G36010	42.424	231	117	8	32	252	25	249	3.52e-55	179
MS.gene61094.t1	AT4G24180	41.200	250	124	9	13	252	14	250	7.06e-55	177
MS.gene61094.t1	AT4G24180	41.200	250	124	9	13	252	14	250	1.65e-54	178
MS.gene61094.t1	AT4G24180	41.700	247	122	8	13	249	14	248	6.01e-54	177
MS.gene61094.t1	AT4G38670	40.000	230	129	7	28	252	5	230	8.82e-54	175
MS.gene61094.t1	AT4G24180	40.476	252	128	9	13	252	14	255	1.01e-53	174
MS.gene61094.t1	AT4G24180	40.476	252	128	9	13	252	14	255	2.29e-53	175
MS.gene61094.t1	AT4G24180	40.964	249	126	8	13	249	14	253	6.61e-53	174
MS.gene61094.t1	AT5G02140	38.819	237	138	5	18	252	9	240	1.92e-50	165
MS.gene61094.t1	AT5G02140	38.819	237	138	5	18	252	9	240	3.88e-50	166
MS.gene61094.t1	AT5G38280	36.965	257	149	9	1	252	1	249	1.80e-43	156
MS.gene61094.t1	AT5G38280	36.965	257	149	9	1	252	1	249	2.59e-43	155
MS.gene61094.t1	AT4G11650	35.102	245	130	11	12	252	3	222	2.49e-37	132
MS.gene61094.t1	AT4G18253	35.124	242	141	6	13	252	10	237	1.13e-36	130
MS.gene61094.t1	AT4G36000	41.611	149	74	5	105	252	1	137	2.68e-34	123
MS.gene61094.t1	AT4G36000	41.611	149	74	5	105	252	1	137	2.68e-34	123
MS.gene61094.t1	AT4G18250	36.626	243	138	9	13	252	42	271	8.15e-34	129
MS.gene61094.t1	AT1G70250	33.333	228	137	9	32	252	147	366	8.76e-29	114
MS.gene61094.t1	AT5G24620	44.167	120	62	3	137	252	15	133	3.75e-24	98.6
MS.gene61094.t1	AT2G24810	46.575	73	38	1	180	252	121	192	5.97e-15	71.6

Find 94 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTTTACAAAAGTGAATATT+AGG	0.171798	4.4:-42420461	None:intergenic
AAGTTTGTGGGTTGTTAAAA+TGG	0.224217	4.4:-42420983	None:intergenic
CGGCCGGCCCAGTGGGTGTC+TGG	0.228338	4.4:-42420591	None:intergenic
GGCTTGAGAGGGTGAGAATA+TGG	0.325859	4.4:-42420439	None:intergenic
GGTGGTGGAGCAGCCGGTTC+TGG	0.335053	4.4:-42420622	None:intergenic
TTCTTCACCGGGTGAACTTA+AGG	0.359396	4.4:+42421097	MS.gene61094:CDS
GTTTACAAAAGTGAATATTA+GGG	0.373284	4.4:-42420460	None:intergenic
TTCCCGTCCCAGACACCCAC+TGG	0.378709	4.4:+42420583	MS.gene61094:CDS
CCCACTGGGCCGGCCGTGCA+TGG	0.379602	4.4:+42420598	MS.gene61094:CDS
GGCCGTGCATGGGCCAGAAC+CGG	0.396060	4.4:+42420609	MS.gene61094:CDS
GGAACACGGTGCTGCAAAAC+AGG	0.402377	4.4:-42420885	None:intergenic
GATGTACGTCGAACTGTACT+AGG	0.403471	4.4:-42420725	None:intergenic
GCCCAGTGGGTGTCTGGGAC+GGG	0.404695	4.4:-42420585	None:intergenic
TCGAACTGTACTAGGGTTGC+AGG	0.406854	4.4:-42420717	None:intergenic
GGAGAATTTGTTGTTGGTGG+TGG	0.409407	4.4:-42420637	None:intergenic
GGCCCAGTGGGTGTCTGGGA+CGG	0.412521	4.4:-42420586	None:intergenic
ACAGTGATGAACATTGTTGT+AGG	0.414434	4.4:+42420958	MS.gene61094:CDS
GGCCGGCCCAGTGGGTGTCT+GGG	0.418213	4.4:-42420590	None:intergenic
TTCATCTTACAGTGTTAGTC+TGG	0.423960	4.4:+42420764	MS.gene61094:CDS
CCGCCGTTGGGGATGATAGC+TGG	0.427338	4.4:-42420504	None:intergenic
GCCACAGTCGCCGGTGAGGC+AGG	0.428001	4.4:-42420658	None:intergenic
GATTCATCAGTGTTCTTCAC+CGG	0.433172	4.4:+42421085	MS.gene61094:CDS
CCATGCACGGCCGGCCCAGT+GGG	0.440420	4.4:-42420598	None:intergenic
TGTGCAAACGTAAACGTTGC+AGG	0.441491	4.4:-42421047	None:intergenic
AGGACGGGGAAGCCGCCGTT+GGG	0.443819	4.4:-42420516	None:intergenic
CAGTAGGTTTACAAGTTTGT+GGG	0.445854	4.4:-42420995	None:intergenic
GTGGGTGTCTGGGACGGGAA+TGG	0.448638	4.4:-42420580	None:intergenic
ACAACTGCCCCTACACCGTC+TGG	0.465738	4.4:+42420481	MS.gene61094:CDS
TCCTGCCTCACCGGCGACTG+TGG	0.467463	4.4:+42420657	MS.gene61094:CDS
GCAGGAGAATTTGTTGTTGG+TGG	0.473524	4.4:-42420640	None:intergenic
GGTTCTGGCCCATGCACGGC+CGG	0.475650	4.4:-42420607	None:intergenic
TTTGCAGCACCGTGTTCCAA+TGG	0.480332	4.4:+42420890	MS.gene61094:CDS
TTGCAGCACCGTGTTCCAAT+GGG	0.481047	4.4:+42420891	MS.gene61094:CDS
AACAAATTCTCCTGCCTCAC+CGG	0.484751	4.4:+42420648	MS.gene61094:CDS
ATAGCTGGCCAGACGGTGTA+GGG	0.485266	4.4:-42420489	None:intergenic
CCCATGCACGGCCGGCCCAG+TGG	0.493544	4.4:-42420599	None:intergenic
GTTGTTGGTGGTGGAGCAGC+CGG	0.496475	4.4:-42420628	None:intergenic
CCACTGGGCCGGCCGTGCAT+GGG	0.498018	4.4:+42420599	MS.gene61094:CDS
CTGGGACGGGAATGGAGAGG+TGG	0.501641	4.4:-42420572	None:intergenic
AGCCGGTTCTGGCCCATGCA+CGG	0.506037	4.4:-42420611	None:intergenic
CCACTCTTACAAGCCACAAC+AGG	0.507576	4.4:-42420921	None:intergenic
CGTCTCAATTGCAACGGAGC+AGG	0.509039	4.4:+42420684	MS.gene61094:CDS
TGTCTGGGACGGGAATGGAG+AGG	0.512733	4.4:-42420575	None:intergenic
TGGAGAGGTGGGTGAAGTGA+CGG	0.513653	4.4:-42420560	None:intergenic
GGCTTCCCCGTCCTCTCTAC+CGG	0.514016	4.4:+42420525	MS.gene61094:CDS
AAACCGCCGGTAGAGAGGAC+GGG	0.515636	4.4:-42420531	None:intergenic
ACAGTAGGTTTACAAGTTTG+TGG	0.515723	4.4:-42420996	None:intergenic
GAGGACGGGGAAGCCGCCGT+TGG	0.517463	4.4:-42420517	None:intergenic
GTCCCAGACACCCACTGGGC+CGG	0.518235	4.4:+42420588	MS.gene61094:CDS
GAGGCAGGAGAATTTGTTGT+TGG	0.520383	4.4:-42420643	None:intergenic
GATAGCTGGCCAGACGGTGT+AGG	0.521167	4.4:-42420490	None:intergenic
CCTGTTGTGGCTTGTAAGAG+TGG	0.525720	4.4:+42420921	MS.gene61094:CDS
GAACACTGATGAATCAAAGA+AGG	0.532789	4.4:-42421077	None:intergenic
TACAGTGTTAGTCTGGTCGA+TGG	0.538986	4.4:+42420771	MS.gene61094:CDS
GAGACGGTTGCCACAGTCGC+CGG	0.545434	4.4:-42420667	None:intergenic
AGTGAATATTAGGGCTTGAG+AGG	0.546980	4.4:-42420451	None:intergenic
TCAGCTTTGCAACCTACCAC+TGG	0.551398	4.4:-42420843	None:intergenic
CACCGTGTTCCAATGGGTCA+TGG	0.555886	4.4:+42420897	MS.gene61094:CDS
ATTCATCAGTGTTCTTCACC+GGG	0.570673	4.4:+42421086	MS.gene61094:CDS
GTTACACCGCATGAGGGTAA+AGG	0.572327	4.4:+42420813	MS.gene61094:CDS
TTTGACTGTTACACCGCATG+AGG	0.572400	4.4:+42420806	MS.gene61094:CDS
ACAACAGGACCATGACCCAT+TGG	0.572570	4.4:-42420906	None:intergenic
AATGGGTCATGGTCCTGTTG+TGG	0.574417	4.4:+42420908	MS.gene61094:CDS
GAAACCGCCGGTAGAGAGGA+CGG	0.576130	4.4:-42420532	None:intergenic
ATGTACGTCGAACTGTACTA+GGG	0.577377	4.4:-42420724	None:intergenic
CTGCTCCGTTGCAATTGAGA+CGG	0.579237	4.4:-42420683	None:intergenic
TGGGACGGGAATGGAGAGGT+GGG	0.579840	4.4:-42420571	None:intergenic
TCCCGTCCCAGACACCCACT+GGG	0.584127	4.4:+42420584	MS.gene61094:CDS
CTCAATTGCAACGGAGCAGG+TGG	0.588039	4.4:+42420687	MS.gene61094:CDS
TCATGCGGTGTAACAGTCAA+AGG	0.597597	4.4:-42420804	None:intergenic
AACCGCCGGTAGAGAGGACG+GGG	0.600180	4.4:-42420530	None:intergenic
GGACGGGGAAGCCGCCGTTG+GGG	0.602653	4.4:-42420515	None:intergenic
AAAGGTGAGTGTCCAGTGGT+AGG	0.603664	4.4:+42420831	MS.gene61094:CDS
GTTCGAAACCGCCGGTAGAG+AGG	0.605531	4.4:-42420536	None:intergenic
GTGAATATTAGGGCTTGAGA+GGG	0.611169	4.4:-42420450	None:intergenic
GGTTGAAATGAGAAGTGAGT+TGG	0.612661	4.4:-42420403	None:intergenic
TTCCCCGTCCTCTCTACCGG+CGG	0.618761	4.4:+42420528	MS.gene61094:CDS
CACTCACCTTTACCCTCATG+CGG	0.619853	4.4:-42420819	None:intergenic
GGCAACCGTCTCAATTGCAA+CGG	0.619867	4.4:+42420678	MS.gene61094:CDS
GAATATGGTGAGAAAGATGA+AGG	0.622035	4.4:-42420424	None:intergenic
AATGAGAAGTGAGTTGGTGA+AGG	0.623754	4.4:-42420397	None:intergenic
GGGGATGATAGCTGGCCAGA+CGG	0.631024	4.4:-42420496	None:intergenic
GACCATGACCCATTGGAACA+CGG	0.632888	4.4:-42420899	None:intergenic
GTGACGGAGTTCGAAACCGC+CGG	0.635783	4.4:-42420544	None:intergenic
AAGATAACCTTAAGTTCACC+CGG	0.642887	4.4:-42421104	None:intergenic
TGGCCAGCTATCATCCCCAA+CGG	0.650509	4.4:+42420501	MS.gene61094:CDS
TTGACTGTTACACCGCATGA+GGG	0.659652	4.4:+42420807	MS.gene61094:CDS
GGTTGCCACAGTCGCCGGTG+AGG	0.664371	4.4:-42420662	None:intergenic
TAGCTGGCCAGACGGTGTAG+GGG	0.666219	4.4:-42420488	None:intergenic
CCAGCTATCATCCCCAACGG+CGG	0.674088	4.4:+42420504	MS.gene61094:CDS
AACTGTACTAGGGTTGCAGG+TGG	0.674287	4.4:-42420714	None:intergenic
GTACAGTTCGACGTACATCA+CGG	0.678213	4.4:+42420729	MS.gene61094:CDS
ACACGGTGCTGCAAAACAGG+AGG	0.685097	4.4:-42420882	None:intergenic
GGGTAAAGGTGAGTGTCCAG+TGG	0.691546	4.4:+42420827	MS.gene61094:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GTTTACAAAAGTGAATATTA+GGG	-	chr4.4:42420463-42420482	None:intergenic	20.0%
!!	TGTTTACAAAAGTGAATATT+AGG	-	chr4.4:42420464-42420483	None:intergenic	20.0%
!	AAGTTTGTGGGTTGTTAAAA+TGG	-	chr4.4:42420986-42421005	None:intergenic	30.0%
	AAAAACTTGGAGTACACAGT+AGG	-	chr4.4:42421014-42421033	None:intergenic	35.0%
	AAGATAACCTTAAGTTCACC+CGG	-	chr4.4:42421107-42421126	None:intergenic	35.0%
	ACAAGCATCCTTGAAAAACT+TGG	-	chr4.4:42421027-42421046	None:intergenic	35.0%
	ACAGTAGGTTTACAAGTTTG+TGG	-	chr4.4:42420999-42421018	None:intergenic	35.0%
	ACAGTGATGAACATTGTTGT+AGG	+	chr4.4:42420958-42420977	MS.gene61094:CDS	35.0%
	CAGTAGGTTTACAAGTTTGT+GGG	-	chr4.4:42420998-42421017	None:intergenic	35.0%
	GAACACTGATGAATCAAAGA+AGG	-	chr4.4:42421080-42421099	None:intergenic	35.0%
	GAATATGGTGAGAAAGATGA+AGG	-	chr4.4:42420427-42420446	None:intergenic	35.0%
	TTCATCTTACAGTGTTAGTC+TGG	+	chr4.4:42420764-42420783	MS.gene61094:CDS	35.0%
!	TGTGTACTCCAAGTTTTTCA+AGG	+	chr4.4:42421016-42421035	MS.gene61094:CDS	35.0%
	AGTGAATATTAGGGCTTGAG+AGG	-	chr4.4:42420454-42420473	None:intergenic	40.0%
	ATGTACGTCGAACTGTACTA+GGG	-	chr4.4:42420727-42420746	None:intergenic	40.0%
	ATTCATCAGTGTTCTTCACC+GGG	+	chr4.4:42421086-42421105	MS.gene61094:CDS	40.0%
	GATTCATCAGTGTTCTTCAC+CGG	+	chr4.4:42421085-42421104	MS.gene61094:CDS	40.0%
	GGTTGAAATGAGAAGTGAGT+TGG	-	chr4.4:42420406-42420425	None:intergenic	40.0%
	GTGAATATTAGGGCTTGAGA+GGG	-	chr4.4:42420453-42420472	None:intergenic	40.0%
!!	AATGAGAAGTGAGTTGGTGA+AGG	-	chr4.4:42420400-42420419	None:intergenic	40.0%
	AACAAATTCTCCTGCCTCAC+CGG	+	chr4.4:42420648-42420667	MS.gene61094:CDS	45.0%
	GATGTACGTCGAACTGTACT+AGG	-	chr4.4:42420728-42420747	None:intergenic	45.0%
	GTACAGTTCGACGTACATCA+CGG	+	chr4.4:42420729-42420748	MS.gene61094:CDS	45.0%
	TCATGCGGTGTAACAGTCAA+AGG	-	chr4.4:42420807-42420826	None:intergenic	45.0%
	TGTGCAAACGTAAACGTTGC+AGG	-	chr4.4:42421050-42421069	None:intergenic	45.0%
	TTCTTCACCGGGTGAACTTA+AGG	+	chr4.4:42421097-42421116	MS.gene61094:CDS	45.0%
	TTGACTGTTACACCGCATGA+GGG	+	chr4.4:42420807-42420826	MS.gene61094:CDS	45.0%
	TTTGACTGTTACACCGCATG+AGG	+	chr4.4:42420806-42420825	MS.gene61094:CDS	45.0%
!	TACAGTGTTAGTCTGGTCGA+TGG	+	chr4.4:42420771-42420790	MS.gene61094:CDS	45.0%
!!	GAGGCAGGAGAATTTGTTGT+TGG	-	chr4.4:42420646-42420665	None:intergenic	45.0%
!!	GCAGGAGAATTTGTTGTTGG+TGG	-	chr4.4:42420643-42420662	None:intergenic	45.0%
!!	GGAGAATTTGTTGTTGGTGG+TGG	-	chr4.4:42420640-42420659	None:intergenic	45.0%
	AAAGGTGAGTGTCCAGTGGT+AGG	+	chr4.4:42420831-42420850	MS.gene61094:CDS	50.0%
	AACTGTACTAGGGTTGCAGG+TGG	-	chr4.4:42420717-42420736	None:intergenic	50.0%
	AATGGGTCATGGTCCTGTTG+TGG	+	chr4.4:42420908-42420927	MS.gene61094:CDS	50.0%
	ACAACAGGACCATGACCCAT+TGG	-	chr4.4:42420909-42420928	None:intergenic	50.0%
	CACTCACCTTTACCCTCATG+CGG	-	chr4.4:42420822-42420841	None:intergenic	50.0%
	CCACTCTTACAAGCCACAAC+AGG	-	chr4.4:42420924-42420943	None:intergenic	50.0%
	CTGCTCCGTTGCAATTGAGA+CGG	-	chr4.4:42420686-42420705	None:intergenic	50.0%
	GACCATGACCCATTGGAACA+CGG	-	chr4.4:42420902-42420921	None:intergenic	50.0%
	GGCAACCGTCTCAATTGCAA+CGG	+	chr4.4:42420678-42420697	MS.gene61094:CDS	50.0%
	GGCTTGAGAGGGTGAGAATA+TGG	-	chr4.4:42420442-42420461	None:intergenic	50.0%
	GTTACACCGCATGAGGGTAA+AGG	+	chr4.4:42420813-42420832	MS.gene61094:CDS	50.0%
	TCAGCTTTGCAACCTACCAC+TGG	-	chr4.4:42420846-42420865	None:intergenic	50.0%
	TCGAACTGTACTAGGGTTGC+AGG	-	chr4.4:42420720-42420739	None:intergenic	50.0%
	TTGCAGCACCGTGTTCCAAT+GGG	+	chr4.4:42420891-42420910	MS.gene61094:CDS	50.0%
	TTTGCAGCACCGTGTTCCAA+TGG	+	chr4.4:42420890-42420909	MS.gene61094:CDS	50.0%
!	CCTGTTGTGGCTTGTAAGAG+TGG	+	chr4.4:42420921-42420940	MS.gene61094:CDS	50.0%
	ATAGCTGGCCAGACGGTGTA+GGG	-	chr4.4:42420492-42420511	None:intergenic	55.0%
	CACCGTGTTCCAATGGGTCA+TGG	+	chr4.4:42420897-42420916	MS.gene61094:CDS	55.0%
	CGTCTCAATTGCAACGGAGC+AGG	+	chr4.4:42420684-42420703	MS.gene61094:CDS	55.0%
	CTCAATTGCAACGGAGCAGG+TGG	+	chr4.4:42420687-42420706	MS.gene61094:CDS	55.0%
	GGGTAAAGGTGAGTGTCCAG+TGG	+	chr4.4:42420827-42420846	MS.gene61094:CDS	55.0%
	TGGAGAGGTGGGTGAAGTGA+CGG	-	chr4.4:42420563-42420582	None:intergenic	55.0%
	TGGCCAGCTATCATCCCCAA+CGG	+	chr4.4:42420501-42420520	MS.gene61094:CDS	55.0%
!!	ACACGGTGCTGCAAAACAGG+AGG	-	chr4.4:42420885-42420904	None:intergenic	55.0%
!!	GGAACACGGTGCTGCAAAAC+AGG	-	chr4.4:42420888-42420907	None:intergenic	55.0%
	AAACCGCCGGTAGAGAGGAC+GGG	-	chr4.4:42420534-42420553	None:intergenic	60.0%
	ACAACTGCCCCTACACCGTC+TGG	+	chr4.4:42420481-42420500	MS.gene61094:CDS	60.0%
	CCAGCTATCATCCCCAACGG+CGG	+	chr4.4:42420504-42420523	MS.gene61094:CDS	60.0%
	GAAACCGCCGGTAGAGAGGA+CGG	-	chr4.4:42420535-42420554	None:intergenic	60.0%
	GATAGCTGGCCAGACGGTGT+AGG	-	chr4.4:42420493-42420512	None:intergenic	60.0%
	GGGGATGATAGCTGGCCAGA+CGG	-	chr4.4:42420499-42420518	None:intergenic	60.0%
	GTTCGAAACCGCCGGTAGAG+AGG	-	chr4.4:42420539-42420558	None:intergenic	60.0%
	TAGCTGGCCAGACGGTGTAG+GGG	-	chr4.4:42420491-42420510	None:intergenic	60.0%
	TGGGACGGGAATGGAGAGGT+GGG	-	chr4.4:42420574-42420593	None:intergenic	60.0%
!	GTGACGGAGTTCGAAACCGC+CGG	-	chr4.4:42420547-42420566	None:intergenic	60.0%
!	TGTCTGGGACGGGAATGGAG+AGG	-	chr4.4:42420578-42420597	None:intergenic	60.0%
!!	GTTGTTGGTGGTGGAGCAGC+CGG	-	chr4.4:42420631-42420650	None:intergenic	60.0%
	AACCGCCGGTAGAGAGGACG+GGG	-	chr4.4:42420533-42420552	None:intergenic	65.0%
	CCGCCGTTGGGGATGATAGC+TGG	-	chr4.4:42420507-42420526	None:intergenic	65.0%
	CTGGGACGGGAATGGAGAGG+TGG	-	chr4.4:42420575-42420594	None:intergenic	65.0%
	GAGACGGTTGCCACAGTCGC+CGG	-	chr4.4:42420670-42420689	None:intergenic	65.0%
	GGCTTCCCCGTCCTCTCTAC+CGG	+	chr4.4:42420525-42420544	MS.gene61094:CDS	65.0%
	TCCCGTCCCAGACACCCACT+GGG	+	chr4.4:42420584-42420603	MS.gene61094:CDS	65.0%
	TTCCCCGTCCTCTCTACCGG+CGG	+	chr4.4:42420528-42420547	MS.gene61094:CDS	65.0%
	TTCCCGTCCCAGACACCCAC+TGG	+	chr4.4:42420583-42420602	MS.gene61094:CDS	65.0%
!	AGCCGGTTCTGGCCCATGCA+CGG	-	chr4.4:42420614-42420633	None:intergenic	65.0%
!	GTGGGTGTCTGGGACGGGAA+TGG	-	chr4.4:42420583-42420602	None:intergenic	65.0%
	AGGACGGGGAAGCCGCCGTT+GGG	-	chr4.4:42420519-42420538	None:intergenic	70.0%
	GGCCCAGTGGGTGTCTGGGA+CGG	-	chr4.4:42420589-42420608	None:intergenic	70.0%
	GGCCGTGCATGGGCCAGAAC+CGG	+	chr4.4:42420609-42420628	MS.gene61094:CDS	70.0%
	GGTTGCCACAGTCGCCGGTG+AGG	-	chr4.4:42420665-42420684	None:intergenic	70.0%
	GTCCCAGACACCCACTGGGC+CGG	+	chr4.4:42420588-42420607	MS.gene61094:CDS	70.0%
	TCCTGCCTCACCGGCGACTG+TGG	+	chr4.4:42420657-42420676	MS.gene61094:CDS	70.0%
!	GCCCAGTGGGTGTCTGGGAC+GGG	-	chr4.4:42420588-42420607	None:intergenic	70.0%
!	GGTTCTGGCCCATGCACGGC+CGG	-	chr4.4:42420610-42420629	None:intergenic	70.0%
!!	GGTGGTGGAGCAGCCGGTTC+TGG	-	chr4.4:42420625-42420644	None:intergenic	70.0%
	CCACTGGGCCGGCCGTGCAT+GGG	+	chr4.4:42420599-42420618	MS.gene61094:CDS	75.0%
	CCATGCACGGCCGGCCCAGT+GGG	-	chr4.4:42420601-42420620	None:intergenic	75.0%
	GAGGACGGGGAAGCCGCCGT+TGG	-	chr4.4:42420520-42420539	None:intergenic	75.0%
	GCCACAGTCGCCGGTGAGGC+AGG	-	chr4.4:42420661-42420680	None:intergenic	75.0%
	GGACGGGGAAGCCGCCGTTG+GGG	-	chr4.4:42420518-42420537	None:intergenic	75.0%
	GGCCGGCCCAGTGGGTGTCT+GGG	-	chr4.4:42420593-42420612	None:intergenic	75.0%
!	CCCACTGGGCCGGCCGTGCA+TGG	+	chr4.4:42420598-42420617	MS.gene61094:CDS	80.0%
!	CCCATGCACGGCCGGCCCAG+TGG	-	chr4.4:42420602-42420621	None:intergenic	80.0%
!	CGGCCGGCCCAGTGGGTGTC+TGG	-	chr4.4:42420594-42420613	None:intergenic	80.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	42420375	42421136	42420375	ID=MS.gene61094
chr4.4	mRNA	42420375	42421136	42420375	ID=MS.gene61094.t1;Parent=MS.gene61094
chr4.4	exon	42420375	42421136	42420375	ID=MS.gene61094.t1.exon1;Parent=MS.gene61094.t1
chr4.4	CDS	42420375	42421136	42420375	ID=cds.MS.gene61094.t1;Parent=MS.gene61094.t1

Gene Sequence

>MS.gene61094

ATGGCTTCTTCTTTTTCTTCTTCCTTCACCAACTCACTTCTCATTTCAACCTTCATCTTTCTCACCATATTCTCACCCTCTCAAGCCCTAATATTCACTTTTGTAAACAACTGCCCCTACACCGTCTGGCCAGCTATCATCCCCAACGGCGGCTTCCCCGTCCTCTCTACCGGCGGTTTCGAACTCCGTCACTTCACCCACCTCTCCATTCCCGTCCCAGACACCCACTGGGCCGGCCGTGCATGGGCCAGAACCGGCTGCTCCACCACCAACAACAAATTCTCCTGCCTCACCGGCGACTGTGGCAACCGTCTCAATTGCAACGGAGCAGGTGGTTCACCACCTGCAACCCTAGTACAGTTCGACGTACATCACGGTAACAAAGACTTTTCATCTTACAGTGTTAGTCTGGTCGATGGTTTCAACACTCCTTTGACTGTTACACCGCATGAGGGTAAAGGTGAGTGTCCAGTGGTAGGTTGCAAAGCTGATCTTGTTGCTTCATGTCCTCCTGTTTTGCAGCACCGTGTTCCAATGGGTCATGGTCCTGTTGTGGCTTGTAAGAGTGGTTGTGAAGCTTTTCACAGTGATGAACATTGTTGTAGGAACCATTTTAACAACCCACAAACTTGTAAACCTACTGTGTACTCCAAGTTTTTCAAGGATGCTTGTCCTGCAACGTTTACGTTTGCACATGATTCTCCTTCTTTGATTCATCAGTGTTCTTCACCGGGTGAACTTAAGGTTATCTTTTGCCATTGA

Protein sequence

>MS.gene61094.t1

MASSFSSSFTNSLLISTFIFLTIFSPSQALIFTFVNNCPYTVWPAIIPNGGFPVLSTGGFELRHFTHLSIPVPDTHWAGRAWARTGCSTTNNKFSCLTGDCGNRLNCNGAGGSPPATLVQFDVHHGNKDFSSYSVSLVDGFNTPLTVTPHEGKGECPVVGCKADLVASCPPVLQHRVPMGHGPVVACKSGCEAFHSDEHCCRNHFNNPQTCKPTVYSKFFKDACPATFTFAHDSPSLIHQCSSPGELKVIFCH