Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59466.t1 | XP_003612165.1 | 94.2 | 291 | 15 | 2 | 1 | 291 | 1 | 289 | 1.30E-126 | 462.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59466.t1 | G7JW75 | 94.2 | 291 | 15 | 2 | 1 | 291 | 1 | 289 | 9.7e-127 | 462.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene59466 | 0.834469 | 2.94E-56 | -1.69E-46 |
| MS.gene049596 | MS.gene59466 | 0.840785 | 7.05E-58 | -1.69E-46 |
| MS.gene049989 | MS.gene59466 | 0.882855 | 7.34E-71 | -1.69E-46 |
| MS.gene050297 | MS.gene59466 | 0.864377 | 1.27E-64 | -1.69E-46 |
| MS.gene05124 | MS.gene59466 | 0.858992 | 5.63E-63 | -1.69E-46 |
| MS.gene051629 | MS.gene59466 | 0.80215 | 6.43E-49 | -1.69E-46 |
| MS.gene051698 | MS.gene59466 | 0.807105 | 5.95E-50 | -1.69E-46 |
| MS.gene051742 | MS.gene59466 | 0.859261 | 4.68E-63 | -1.69E-46 |
| MS.gene051914 | MS.gene59466 | 0.80881 | 2.58E-50 | -1.69E-46 |
| MS.gene051955 | MS.gene59466 | 0.848304 | 6.67E-60 | -1.69E-46 |
| MS.gene052143 | MS.gene59466 | 0.853244 | 2.72E-61 | -1.69E-46 |
| MS.gene052308 | MS.gene59466 | 0.833535 | 5.04E-56 | -1.69E-46 |
| MS.gene052367 | MS.gene59466 | 0.89277 | 1.17E-74 | -1.69E-46 |
| MS.gene053173 | MS.gene59466 | 0.853593 | 2.16E-61 | -1.69E-46 |
| MS.gene053348 | MS.gene59466 | 0.810396 | 1.18E-50 | -1.69E-46 |
| MS.gene053416 | MS.gene59466 | 0.886351 | 3.69E-72 | -1.69E-46 |
| MS.gene053417 | MS.gene59466 | 0.886934 | 2.22E-72 | -1.69E-46 |
| MS.gene05369 | MS.gene59466 | 0.81944 | 1.16E-52 | -1.69E-46 |
| MS.gene054551 | MS.gene59466 | 0.839335 | 1.69E-57 | -1.69E-46 |
| MS.gene054593 | MS.gene59466 | 0.839603 | 1.44E-57 | -1.69E-46 |
| MS.gene054633 | MS.gene59466 | 0.824796 | 6.65E-54 | -1.69E-46 |
| MS.gene054643 | MS.gene59466 | 0.835865 | 1.31E-56 | -1.69E-46 |
| MS.gene055308 | MS.gene59466 | 0.816687 | 4.86E-52 | -1.69E-46 |
| MS.gene055578 | MS.gene59466 | 0.83633 | 9.97E-57 | -1.69E-46 |
| MS.gene055957 | MS.gene59466 | 0.807823 | 4.19E-50 | -1.69E-46 |
| MS.gene056041 | MS.gene59466 | 0.871258 | 7.84E-67 | -1.69E-46 |
| MS.gene056266 | MS.gene59466 | -0.823749 | 1.17E-53 | -1.69E-46 |
| MS.gene05640 | MS.gene59466 | 0.839066 | 1.98E-57 | -1.69E-46 |
| MS.gene056526 | MS.gene59466 | 0.869411 | 3.16E-66 | -1.69E-46 |
| MS.gene05732 | MS.gene59466 | 0.815254 | 1.02E-51 | -1.69E-46 |
| MS.gene057367 | MS.gene59466 | 0.801976 | 6.98E-49 | -1.69E-46 |
| MS.gene057458 | MS.gene59466 | 0.829752 | 4.32E-55 | -1.69E-46 |
| MS.gene057483 | MS.gene59466 | 0.802061 | 6.71E-49 | -1.69E-46 |
| MS.gene058818 | MS.gene59466 | 0.838943 | 2.13E-57 | -1.69E-46 |
| MS.gene058827 | MS.gene59466 | 0.827748 | 1.32E-54 | -1.69E-46 |
| MS.gene058844 | MS.gene59466 | 0.82101 | 5.07E-53 | -1.69E-46 |
| MS.gene059300 | MS.gene59466 | 0.826465 | 2.67E-54 | -1.69E-46 |
| MS.gene059553 | MS.gene59466 | 0.838174 | 3.36E-57 | -1.69E-46 |
| MS.gene060473 | MS.gene59466 | 0.87199 | 4.48E-67 | -1.69E-46 |
| MS.gene060565 | MS.gene59466 | 0.878903 | 1.93E-69 | -1.69E-46 |
| MS.gene06057 | MS.gene59466 | 0.840903 | 6.57E-58 | -1.69E-46 |
| MS.gene06093 | MS.gene59466 | 0.870782 | 1.13E-66 | -1.69E-46 |
| MS.gene061099 | MS.gene59466 | 0.841276 | 5.24E-58 | -1.69E-46 |
| MS.gene061260 | MS.gene59466 | 0.880879 | 3.82E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59466.t1 | MTR_5g022010 | 92.784 | 291 | 19 | 2 | 1 | 291 | 1 | 289 | 0.0 | 500 |
| MS.gene59466.t1 | MTR_8g075950 | 51.143 | 350 | 96 | 14 | 1 | 286 | 1 | 339 | 5.93e-73 | 228 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59466.t1 | AT5G66230 | 39.193 | 347 | 130 | 14 | 1 | 284 | 1 | 329 | 2.97e-45 | 156 |
| MS.gene59466.t1 | AT5G66230 | 38.617 | 347 | 132 | 14 | 1 | 284 | 217 | 545 | 4.11e-42 | 152 |
| MS.gene59466.t1 | AT3G51230 | 44.954 | 109 | 39 | 3 | 1 | 91 | 1 | 106 | 5.79e-18 | 80.5 |
Find 59 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAAATTCAGAGTCTTTC+TGG | 0.117151 | 5.4:-13653821 | MS.gene59466:CDS |
| AAACGAAGATGTTTCCCTTT+TGG | 0.292026 | 5.4:+13652784 | None:intergenic |
| TCACCAATTGTGGGTCTTGC+TGG | 0.314090 | 5.4:-13653971 | MS.gene59466:CDS |
| GTGAGAGTTGTTGTGGATGA+TGG | 0.320301 | 5.4:+13654249 | None:intergenic |
| ATGATGGCAGGTGGTGAAAA+TGG | 0.338531 | 5.4:-13653256 | MS.gene59466:intron |
| TCAAGATCGATGTGCATTGA+TGG | 0.354068 | 5.4:-13654008 | MS.gene59466:CDS |
| CTCTGAGAAGTCAAGGGACT+TGG | 0.360313 | 5.4:+13653197 | None:intergenic |
| CCAGAAAGACTCTGAATTTG+AGG | 0.370802 | 5.4:+13653821 | None:intergenic |
| TAGATGAAGATGCTTCTATC+TGG | 0.397277 | 5.4:-13653107 | MS.gene59466:CDS |
| CTTCTTCAACCATCTGCATA+AGG | 0.410420 | 5.4:+13653852 | None:intergenic |
| ACCTAATGTGTTGCATTTGA+AGG | 0.412380 | 5.4:-13652818 | MS.gene59466:CDS |
| AAGGTGGTTCCAAAATTTGC+TGG | 0.416494 | 5.4:-13652919 | MS.gene59466:CDS |
| TCAACAACAATCAATTTCTC+AGG | 0.428450 | 5.4:-13653771 | MS.gene59466:intron |
| TGAGAGTTGTTGTGGATGAT+GGG | 0.430806 | 5.4:+13654250 | None:intergenic |
| AAGGGATTACCAACACCAAA+AGG | 0.433129 | 5.4:-13652799 | MS.gene59466:CDS |
| CCCTTCAAATGCAACACATT+AGG | 0.434003 | 5.4:+13652817 | None:intergenic |
| GACAAATGATTCACCAATTG+TGG | 0.435186 | 5.4:-13653981 | MS.gene59466:CDS |
| TTCTTCAACCATCTGCATAA+GGG | 0.467939 | 5.4:+13653853 | None:intergenic |
| AGCAAAGCTTCACCAGATCC+TGG | 0.479015 | 5.4:+13653893 | None:intergenic |
| CCACCAGCAAGACCCACAAT+TGG | 0.497063 | 5.4:+13653968 | None:intergenic |
| GTGAAGAACACACCAGGATC+TGG | 0.501240 | 5.4:-13653905 | MS.gene59466:CDS |
| CCTAATGTGTTGCATTTGAA+GGG | 0.505604 | 5.4:-13652817 | MS.gene59466:CDS |
| GAGATTTCTCTGAGAAGTCA+AGG | 0.515939 | 5.4:+13653190 | None:intergenic |
| TATGCAGATGGTTGAAGAAG+AGG | 0.527703 | 5.4:-13653849 | MS.gene59466:CDS |
| AGATTCTGTGTCAAAATCAA+AGG | 0.534978 | 5.4:-13654041 | MS.gene59466:CDS |
| GATTCTGTGTCAAAATCAAA+GGG | 0.549781 | 5.4:-13654040 | MS.gene59466:CDS |
| CTACCTCTTTGTTTCGCAGA+CGG | 0.551296 | 5.4:+13653932 | None:intergenic |
| GTGACAGAAGGAAGTGTGGT+TGG | 0.552956 | 5.4:-13653141 | MS.gene59466:CDS |
| ATCTGGTGAAGCTTTGCTGA+GGG | 0.555103 | 5.4:-13653888 | MS.gene59466:CDS |
| GAGAGTTGTTGTGGATGATG+GGG | 0.555778 | 5.4:+13654251 | None:intergenic |
| CAACATTAGAGTGAATGAAA+AGG | 0.556085 | 5.4:-13652938 | MS.gene59466:CDS |
| AGATTTCTCTGAGAAGTCAA+GGG | 0.560895 | 5.4:+13653191 | None:intergenic |
| GGTGTTGGTGAGAGTTGTTG+TGG | 0.563322 | 5.4:+13654242 | None:intergenic |
| CCAATTGTGGGTCTTGCTGG+TGG | 0.574159 | 5.4:-13653968 | MS.gene59466:CDS |
| TTTCATATTCACAGCTACCT+TGG | 0.574412 | 5.4:+13653232 | None:intergenic |
| GGCTTGATGAACTGTGTGAA+GGG | 0.581098 | 5.4:-13652966 | MS.gene59466:CDS |
| AGGGATTACCAACACCAAAA+GGG | 0.583936 | 5.4:-13652798 | MS.gene59466:CDS |
| TGATGAACTTGTGAATGAAG+TGG | 0.585794 | 5.4:-13652866 | MS.gene59466:CDS |
| ACACCGTCTGCGAAACAAAG+AGG | 0.595726 | 5.4:-13653935 | MS.gene59466:CDS |
| ACAAATGATTCACCAATTGT+GGG | 0.597784 | 5.4:-13653980 | MS.gene59466:CDS |
| CAACAATGATGAAGATGATG+TGG | 0.602585 | 5.4:-13653064 | MS.gene59466:CDS |
| AGTGAAGACCCTTATGCAGA+TGG | 0.608040 | 5.4:-13653861 | MS.gene59466:CDS |
| TGTGGAGGAAGAAATAGCTG+AGG | 0.610254 | 5.4:-13653046 | MS.gene59466:CDS |
| GGGCTTGATGAACTGTGTGA+AGG | 0.612048 | 5.4:-13652967 | MS.gene59466:CDS |
| CATTAGAGTGAATGAAAAGG+TGG | 0.614379 | 5.4:-13652935 | MS.gene59466:CDS |
| TGCACCTCTGAGGTGACAGA+AGG | 0.618247 | 5.4:-13653153 | MS.gene59466:CDS |
| TTACTGACTTGAAAGTGGAA+TGG | 0.620132 | 5.4:+13654221 | None:intergenic |
| ATCCTGGTGTGTTCTTCACA+CGG | 0.624024 | 5.4:+13653909 | None:intergenic |
| CAATGATGAAGATGATGTGG+AGG | 0.630227 | 5.4:-13653061 | MS.gene59466:CDS |
| ACTTCCTTCTGTCACCTCAG+AGG | 0.635704 | 5.4:+13653149 | None:intergenic |
| ACTTGAAAGTGGAATGGTGT+TGG | 0.644715 | 5.4:+13654227 | None:intergenic |
| GATCTGGTGAAGCTTTGCTG+AGG | 0.645257 | 5.4:-13653889 | MS.gene59466:CDS |
| AGCCGTGTGAAGAACACACC+AGG | 0.662563 | 5.4:-13653911 | MS.gene59466:CDS |
| ATCAGAAGAATGCACCTCTG+AGG | 0.671388 | 5.4:-13653163 | MS.gene59466:CDS |
| TCTGGTGAAGCTTTGCTGAG+GGG | 0.673835 | 5.4:-13653887 | MS.gene59466:CDS |
| AATTTGCTGGAAAACACACA+AGG | 0.675885 | 5.4:-13652906 | MS.gene59466:CDS |
| TGAACTTGTGAATGAAGTGG+AGG | 0.693057 | 5.4:-13652863 | MS.gene59466:CDS |
| TGAGGTGACAGAAGGAAGTG+TGG | 0.713802 | 5.4:-13653145 | MS.gene59466:CDS |
| CAGGTGGTGAAAATGGACCA+AGG | 0.731969 | 5.4:-13653249 | MS.gene59466:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTTTTCTGAAATTTT+AGG | - | chr5.4:13653428-13653447 | MS.gene59466:intron | 10.0% |
| !! | AAAAAGAAAAAGATTATGAA+GGG | - | chr5.4:13654018-13654037 | MS.gene59466:CDS | 15.0% |
| !! | ACTTTATAGATTATATATCT+AGG | + | chr5.4:13653580-13653599 | None:intergenic | 15.0% |
| !!! | ATTTTTTTCAAGATGTTTAT+TGG | + | chr5.4:13652869-13652888 | None:intergenic | 15.0% |
| !!! | CATGCAAATTTATATTTTTA+TGG | - | chr5.4:13652825-13652844 | MS.gene59466:CDS | 15.0% |
| !! | AAACATCTTGAAAAAAATTC+TGG | - | chr5.4:13652871-13652890 | MS.gene59466:CDS | 20.0% |
| !! | AACATAAAGATTTCAATTAC+TGG | + | chr5.4:13653406-13653425 | None:intergenic | 20.0% |
| !! | AACATCTTGAAAAAAATTCT+GGG | - | chr5.4:13652872-13652891 | MS.gene59466:CDS | 20.0% |
| !! | ATAAGATCTCAATTTAATGA+TGG | - | chr5.4:13653733-13653752 | MS.gene59466:intron | 20.0% |
| !! | GAAAAAGAAAAAGATTATGA+AGG | - | chr5.4:13654017-13654036 | MS.gene59466:CDS | 20.0% |
| !!! | TCAATTGCTTTTGAAAAAAA+TGG | - | chr5.4:13653546-13653565 | MS.gene59466:intron | 20.0% |
| !!! | TCTTGTTTTTTTTTTTTTGC+AGG | - | chr5.4:13652932-13652951 | MS.gene59466:CDS | 20.0% |
| !!! | TTTTGAAAAAAATGGAGATT+TGG | - | chr5.4:13653554-13653573 | MS.gene59466:intron | 20.0% |
| ! | ACATGTGAGTTTCAATAAAA+TGG | + | chr5.4:13653374-13653393 | None:intergenic | 25.0% |
| ! | CACTTAATGAACTATTTATG+TGG | - | chr5.4:13653612-13653631 | MS.gene59466:intron | 25.0% |
| ! | CATAAATAGTTCATTAAGTG+AGG | + | chr5.4:13653612-13653631 | None:intergenic | 25.0% |
| ! | CATGTGAGTTTCAATAAAAT+GGG | + | chr5.4:13653373-13653392 | None:intergenic | 25.0% |
| !! | GTATTTCATGCATTTTTCTT+TGG | + | chr5.4:13653278-13653297 | None:intergenic | 25.0% |
| !!! | GCAAGTCTTTTTAATTAGTT+TGG | - | chr5.4:13653346-13653365 | MS.gene59466:intron | 25.0% |
| !!! | TTTTTTTACTGACTTGAAAG+TGG | + | chr5.4:13652792-13652811 | None:intergenic | 25.0% |
| ACAAATGATTCACCAATTGT+GGG | - | chr5.4:13653025-13653044 | MS.gene59466:CDS | 30.0% | |
| AGATTCTGTGTCAAAATCAA+AGG | - | chr5.4:13652964-13652983 | MS.gene59466:CDS | 30.0% | |
| CAACATTAGAGTGAATGAAA+AGG | - | chr5.4:13654067-13654086 | MS.gene59466:intron | 30.0% | |
| GATTCTGTGTCAAAATCAAA+GGG | - | chr5.4:13652965-13652984 | MS.gene59466:CDS | 30.0% | |
| TCAACAACAATCAATTTCTC+AGG | - | chr5.4:13653234-13653253 | MS.gene59466:CDS | 30.0% | |
| ! | AGTGATTGTATAAAGTGTCT+TGG | - | chr5.4:13653673-13653692 | MS.gene59466:intron | 30.0% |
| ! | CATGCATTTTTCTTTGGTTA+GGG | + | chr5.4:13653272-13653291 | None:intergenic | 30.0% |
| ! | TCATGCATTTTTCTTTGGTT+AGG | + | chr5.4:13653273-13653292 | None:intergenic | 30.0% |
| ACCTAATGTGTTGCATTTGA+AGG | - | chr5.4:13654187-13654206 | MS.gene59466:intron | 35.0% | |
| CAACAATGATGAAGATGATG+TGG | - | chr5.4:13653941-13653960 | MS.gene59466:CDS | 35.0% | |
| CATTAGAGTGAATGAAAAGG+TGG | - | chr5.4:13654070-13654089 | MS.gene59466:intron | 35.0% | |
| CCTAATGTGTTGCATTTGAA+GGG | - | chr5.4:13654188-13654207 | MS.gene59466:intron | 35.0% | |
| GACAAATGATTCACCAATTG+TGG | - | chr5.4:13653024-13653043 | MS.gene59466:CDS | 35.0% | |
| GATCTCAATTTAATGATGGC+AGG | - | chr5.4:13653737-13653756 | MS.gene59466:intron | 35.0% | |
| TAGATGAAGATGCTTCTATC+TGG | - | chr5.4:13653898-13653917 | MS.gene59466:CDS | 35.0% | |
| TGATGAACTTGTGAATGAAG+TGG | - | chr5.4:13654139-13654158 | MS.gene59466:intron | 35.0% | |
| TTCTTCAACCATCTGCATAA+GGG | + | chr5.4:13653155-13653174 | None:intergenic | 35.0% | |
| TTTCATATTCACAGCTACCT+TGG | + | chr5.4:13653776-13653795 | None:intergenic | 35.0% | |
| ! | AAACGAAGATGTTTCCCTTT+TGG | + | chr5.4:13654224-13654243 | None:intergenic | 35.0% |
| ! | AGATTTCTCTGAGAAGTCAA+GGG | + | chr5.4:13653817-13653836 | None:intergenic | 35.0% |
| ! | GTGTGTTTTCCAGCAAATTT+TGG | + | chr5.4:13654098-13654117 | None:intergenic | 35.0% |
| ! | TGTCTTGGTAGCATAATTTG+TGG | - | chr5.4:13653688-13653707 | MS.gene59466:intron | 35.0% |
| !! | AATTTGCTGGAAAACACACA+AGG | - | chr5.4:13654099-13654118 | MS.gene59466:intron | 35.0% |
| !! | GAAACATCTTCGTTTTTCTG+AGG | - | chr5.4:13654229-13654248 | MS.gene59466:CDS | 35.0% |
| !! | TTACTGACTTGAAAGTGGAA+TGG | + | chr5.4:13652787-13652806 | None:intergenic | 35.0% |
| AAGGGATTACCAACACCAAA+AGG | - | chr5.4:13654206-13654225 | MS.gene59466:intron | 40.0% | |
| AAGGTGGTTCCAAAATTTGC+TGG | - | chr5.4:13654086-13654105 | MS.gene59466:intron | 40.0% | |
| ACTTGAAAGTGGAATGGTGT+TGG | + | chr5.4:13652781-13652800 | None:intergenic | 40.0% | |
| AGGGATTACCAACACCAAAA+GGG | - | chr5.4:13654207-13654226 | MS.gene59466:intron | 40.0% | |
| CAATGATGAAGATGATGTGG+AGG | - | chr5.4:13653944-13653963 | MS.gene59466:CDS | 40.0% | |
| CCAGAAAGACTCTGAATTTG+AGG | + | chr5.4:13653187-13653206 | None:intergenic | 40.0% | |
| CCCTTCAAATGCAACACATT+AGG | + | chr5.4:13654191-13654210 | None:intergenic | 40.0% | |
| CCTCAAATTCAGAGTCTTTC+TGG | - | chr5.4:13653184-13653203 | MS.gene59466:CDS | 40.0% | |
| CTCAATTTAATGATGGCAGG+TGG | - | chr5.4:13653740-13653759 | MS.gene59466:intron | 40.0% | |
| CTTCTTCAACCATCTGCATA+AGG | + | chr5.4:13653156-13653175 | None:intergenic | 40.0% | |
| TATGCAGATGGTTGAAGAAG+AGG | - | chr5.4:13653156-13653175 | MS.gene59466:CDS | 40.0% | |
| TCAAGATCGATGTGCATTGA+TGG | - | chr5.4:13652997-13653016 | MS.gene59466:CDS | 40.0% | |
| TGAACTTGTGAATGAAGTGG+AGG | - | chr5.4:13654142-13654161 | MS.gene59466:intron | 40.0% | |
| TGAGAGTTGTTGTGGATGAT+GGG | + | chr5.4:13652758-13652777 | None:intergenic | 40.0% | |
| ! | GAGATTTCTCTGAGAAGTCA+AGG | + | chr5.4:13653818-13653837 | None:intergenic | 40.0% |
| !! | ACATCTTCGTTTTTCTGAGG+AGG | - | chr5.4:13654232-13654251 | MS.gene59466:CDS | 40.0% |
| !! | AGATGTTTCCCTTTTGGTGT+TGG | + | chr5.4:13654218-13654237 | None:intergenic | 40.0% |
| AGTGAAGACCCTTATGCAGA+TGG | - | chr5.4:13653144-13653163 | MS.gene59466:CDS | 45.0% | |
| ATCAGAAGAATGCACCTCTG+AGG | - | chr5.4:13653842-13653861 | MS.gene59466:CDS | 45.0% | |
| ATCCTGGTGTGTTCTTCACA+CGG | + | chr5.4:13653099-13653118 | None:intergenic | 45.0% | |
| ATCTGGTGAAGCTTTGCTGA+GGG | - | chr5.4:13653117-13653136 | MS.gene59466:CDS | 45.0% | |
| ATGATGGCAGGTGGTGAAAA+TGG | - | chr5.4:13653749-13653768 | MS.gene59466:intron | 45.0% | |
| GAGAGTTGTTGTGGATGATG+GGG | + | chr5.4:13652757-13652776 | None:intergenic | 45.0% | |
| GGCTTGATGAACTGTGTGAA+GGG | - | chr5.4:13654039-13654058 | MS.gene59466:CDS | 45.0% | |
| GTGAGAGTTGTTGTGGATGA+TGG | + | chr5.4:13652759-13652778 | None:intergenic | 45.0% | |
| TGTGGAGGAAGAAATAGCTG+AGG | - | chr5.4:13653959-13653978 | MS.gene59466:CDS | 45.0% | |
| ! | CTACCTCTTTGTTTCGCAGA+CGG | + | chr5.4:13653076-13653095 | None:intergenic | 45.0% |
| !! | TCGTTTTTCTGAGGAGGAAG+AGG | - | chr5.4:13654238-13654257 | MS.gene59466:CDS | 45.0% |
| !! | TTTTCTGAGGAGGAAGAGGA+AGG | - | chr5.4:13654242-13654261 | MS.gene59466:CDS | 45.0% |
| ACACCGTCTGCGAAACAAAG+AGG | - | chr5.4:13653070-13653089 | MS.gene59466:CDS | 50.0% | |
| ACTTCCTTCTGTCACCTCAG+AGG | + | chr5.4:13653859-13653878 | None:intergenic | 50.0% | |
| AGCAAAGCTTCACCAGATCC+TGG | + | chr5.4:13653115-13653134 | None:intergenic | 50.0% | |
| CAGGTGGTGAAAATGGACCA+AGG | - | chr5.4:13653756-13653775 | MS.gene59466:intron | 50.0% | |
| GATCTGGTGAAGCTTTGCTG+AGG | - | chr5.4:13653116-13653135 | MS.gene59466:CDS | 50.0% | |
| GGGCTTGATGAACTGTGTGA+AGG | - | chr5.4:13654038-13654057 | MS.gene59466:CDS | 50.0% | |
| GTGAAGAACACACCAGGATC+TGG | - | chr5.4:13653100-13653119 | MS.gene59466:CDS | 50.0% | |
| TCACCAATTGTGGGTCTTGC+TGG | - | chr5.4:13653034-13653053 | MS.gene59466:CDS | 50.0% | |
| TCTGGTGAAGCTTTGCTGAG+GGG | - | chr5.4:13653118-13653137 | MS.gene59466:CDS | 50.0% | |
| TGAGGTGACAGAAGGAAGTG+TGG | - | chr5.4:13653860-13653879 | MS.gene59466:CDS | 50.0% | |
| ! | CTCTGAGAAGTCAAGGGACT+TGG | + | chr5.4:13653811-13653830 | None:intergenic | 50.0% |
| ! | GTGACAGAAGGAAGTGTGGT+TGG | - | chr5.4:13653864-13653883 | MS.gene59466:CDS | 50.0% |
| !! | GGTGTTGGTGAGAGTTGTTG+TGG | + | chr5.4:13652766-13652785 | None:intergenic | 50.0% |
| AGCCGTGTGAAGAACACACC+AGG | - | chr5.4:13653094-13653113 | MS.gene59466:CDS | 55.0% | |
| CCAATTGTGGGTCTTGCTGG+TGG | - | chr5.4:13653037-13653056 | MS.gene59466:CDS | 55.0% | |
| CCACCAGCAAGACCCACAAT+TGG | + | chr5.4:13653040-13653059 | None:intergenic | 55.0% | |
| !! | TGCACCTCTGAGGTGACAGA+AGG | - | chr5.4:13653852-13653871 | MS.gene59466:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 13652747 | 13654280 | 13652747 | ID=MS.gene59466 |
| chr5.4 | mRNA | 13652747 | 13654280 | 13652747 | ID=MS.gene59466.t1;Parent=MS.gene59466 |
| chr5.4 | exon | 13654229 | 13654280 | 13654229 | ID=MS.gene59466.t1.exon1;Parent=MS.gene59466.t1 |
| chr5.4 | CDS | 13654229 | 13654280 | 13654229 | ID=cds.MS.gene59466.t1;Parent=MS.gene59466.t1 |
| chr5.4 | exon | 13653772 | 13654073 | 13653772 | ID=MS.gene59466.t1.exon2;Parent=MS.gene59466.t1 |
| chr5.4 | CDS | 13653772 | 13654073 | 13653772 | ID=cds.MS.gene59466.t1;Parent=MS.gene59466.t1 |
| chr5.4 | exon | 13652747 | 13653268 | 13652747 | ID=MS.gene59466.t1.exon3;Parent=MS.gene59466.t1 |
| chr5.4 | CDS | 13652747 | 13653268 | 13652747 | ID=cds.MS.gene59466.t1;Parent=MS.gene59466.t1 |
| Gene Sequence |
| Protein sequence |
