AlfalfaGEDB | MS.gene59775

M. sativa cultivar XinJiangDaYe / MS.gene59775

KEGG: K19347
GO: -
PFAM: PF07738.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59775.t1	XP_003628099.1	96.3	462	17	0	1	462	1	462	9.80E-249	869

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59775.t1	Q9SG79	48.1	472	210	11	1	457	1	452	1.7e-103	377.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59775.t1	G7L6W7	96.3	462	17	0	1	462	1	462	7.1e-249	869.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049350	MS.gene59775	0.820435	6.87E-53	-1.69E-46
MS.gene049807	MS.gene59775	0.817442	3.29E-52	-1.69E-46
MS.gene049887	MS.gene59775	0.806581	7.67E-50	-1.69E-46
MS.gene050414	MS.gene59775	0.807364	5.24E-50	-1.69E-46
MS.gene050838	MS.gene59775	0.829595	4.71E-55	-1.69E-46
MS.gene050901	MS.gene59775	0.814712	1.34E-51	-1.69E-46
MS.gene050945	MS.gene59775	0.801866	7.36E-49	-1.69E-46
MS.gene051003	MS.gene59775	0.828436	9.00E-55	-1.69E-46
MS.gene051233	MS.gene59775	0.819257	1.28E-52	-1.69E-46
MS.gene051234	MS.gene59775	0.839494	1.53E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59775.t1	MTR_8g043510	97.835	462	10	1	462	1	462	0.0	929
MS.gene59775.t1	MTR_4g097690	82.051	39	7	271	309	12	50	1.48e-15	71.2
MS.gene59775.t1	MTR_4g097660	82.051	39	7	271	309	98	136	3.31e-15	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59775.t1	AT5G04990	50.951	473	202	11	1	458	1	458	4.55e-151	438
MS.gene59775.t1	AT3G10730	48.211	475	205	12	1	457	1	452	3.23e-131	387

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Find 155 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAATTGGTGAATAAGG+GGG	0.615746	8.3:+55231453	MS.gene59775:CDS
AACAAAGAGGGTCGCCGGTG+GGG	0.552709	8.3:+55231072	MS.gene59775:CDS
AACCCGCTGCTACCCTTCAA+CGG	0.565773	8.3:-55231835	None:intergenic
AACCCTTCCAACACCGGCAA+CGG	0.541371	8.3:+55230986	MS.gene59775:CDS
AACTCTCAAGCGATATATAC+AGG	0.463430	8.3:-55235524	None:intergenic
AAGAAGATTGAGAATGAGGT+TGG	0.470533	8.3:+55231367	MS.gene59775:CDS
AAGATGTTGAAACCGAGTTT+TGG	0.294665	8.3:+55231793	MS.gene59775:CDS
AAGATTGAGAATGAGGTTGG+TGG	0.541516	8.3:+55231370	MS.gene59775:CDS
AAGCATGCTGCTGATGGGCT+TGG	0.396884	8.3:+55231646	MS.gene59775:CDS
AAGGGAGTTTGCTAGAGGGG+TGG	0.558804	8.3:+55231606	MS.gene59775:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAATTGGTGAATAAGG+GGG	+	chr8.3:55231453-55231472	MS.gene59775:CDS	30.0%
AAATCTAGAGATTAATGCGT+TGG	-	chr8.3:55233836-55233855	None:intergenic	30.0%
AAATTCTGTGTGAATTACCA+AGG	-	chr8.3:55235045-55235064	None:intergenic	30.0%
AAGCCTATGTAGCAAATATT+AGG	-	chr8.3:55235098-55235117	None:intergenic	30.0%
AAGCTTACTGCATTTATAAG+GGG	+	chr8.3:55232577-55232596	MS.gene59775:intron	30.0%
AATATTGCATGATACTCTAG+GGG	-	chr8.3:55234219-55234238	None:intergenic	30.0%
AGTTAAGAAAACTTGGTATG+CGG	+	chr8.3:55233290-55233309	MS.gene59775:intron	30.0%
ATATGATAGGAGAAACATCT+AGG	+	chr8.3:55232530-55232549	MS.gene59775:intron	30.0%
ATGTTATTCTTTGGACCAAA+AGG	+	chr8.3:55234871-55234890	MS.gene59775:intron	30.0%
ATTTGGATGAATTAAAGGTG+GGG	+	chr8.3:55231491-55231510	MS.gene59775:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	55230839	55235594	55230839	ID=MS.gene59775
chr8.3	mRNA	55230839	55235594	55230839	ID=MS.gene59775.t1;Parent=MS.gene59775
chr8.3	exon	55230839	55231921	55230839	ID=MS.gene59775.t1.exon1;Parent=MS.gene59775.t1
chr8.3	CDS	55230839	55231921	55230839	ID=cds.MS.gene59775.t1;Parent=MS.gene59775.t1
chr8.3	exon	55235289	55235594	55235289	ID=MS.gene59775.t1.exon2;Parent=MS.gene59775.t1
chr8.3	CDS	55235289	55235594	55235289	ID=cds.MS.gene59775.t1;Parent=MS.gene59775.t1

Gene Sequence

>MS.gene59775

ATGTCGGCATCCACCGTGTCAATCACGGCGGCGAACCCAGGCACTCGTCGGAGACCCGTCATCTCCACCGACAAGAAAACCGCTAGTAATCTCGAACTTCTCGCCAACGACGTCGCCGCTTCTCCAAACACCGCCGGCGACGGCAAGAACCCTTCCAACACCGGCAACGGTCGTGACTTGAGTCATCACTCGATCCGAAGCGATGCTGTTCTTTCGAAAGATTTGGCACCTGCAACAAAGAGGGTCGCCGGTGGGGATTCAACGCGGCGTGTGAGGAAGAATGGTGGGAAGTCTGAGAAGCAGAAATGGGTTACTGTAGCGAGGATTTTCGCCAAGAATTTTGGGCTTTTGGTGATGGTTGTTGGGTTGGTTCAGTTGATTAGATGGTTTGCGGTGAAATCAGGGGAAGGTGTTGTTGTTGGAGGAGGGTTTGGTGGGTTTTCGGAGTATGAGGACAGGATTACGGAGATGGAGGGTTTGTTGAAGAAGACGGCGAAGATGATGCAGGTGCAGGTTGATGTGGTGGATAAGAAGATTGAGAATGAGGTTGGTGGGTTAAAGAAAGAAATGGATGCGAAAATTGAGCAAAAAGGCGCGTTCTTGGAGAATGAGATAAAGAAATTGGTGAATAAGGGGGATAAATTGGAGAGATATTTGGATGAATTAAAGGTGGGGGATTTGTTAACAAAGGAGGAGTTTGAGAAATTCGTCGAGGGTTTGAAGAATGTGAAGGGGAATGGATATGAGGGTGGTGGTTTGGATGAGATAAGGGAGTTTGCTAGAGGGGTGGTTGAGAGGGAGATTGAGAAGCATGCTGCTGATGGGCTTGGGAGGGTGGATTATGCTCTTGCAAACGGTGGAGCCTGGGTTGTCAGACATTCAGAGGCTTATGATGTGCAGAGGGGGAATTGGTTCTTGTTGAATGCTAGAAATGGTGTTCATCACAATGCTGATAAGATGTTGAAACCGAGTTTTGGGGAGCCTGGACAGTGTTTTCCGTTGAAGGGTAGCAGCGGGTTTGTTCAAATTAGGCTGCGTGCTGAAATCGTTCCTGAGGCTGTTACTTTGGAACATGTAGCAAAGGTGATGCCATGCATATTCTTTTTTAACTATATACAGTTACTGTTATCTTGTCTTGTCATGATGAATCAGTTAGTAATATAATCTTTGACTTGCTGTTAATGTTTTGTGTACTTCCTTGAATATATGAAAATTTTTAGTAGTTGAGAATTGAGATGTTTGTTATAGGAAATTTGATGATGCATACTTGGTTTGAGAATAATCTGCATGATGTGCCCATGAATTAAGTTTATGTTATGTAGGATCATGGTATATCAATTAGACTAGATGTGACTGACTTATCCATGCCTTTGGGTGAGTTATGTAGGGTGTAGTTTTTAGAAGTGGCAATTTGTTTTCTTTTTTCCTTGTAATTGGGCTACTAAATGAGATGAAAAATAAGTTTATGTTATCTAGGATCATATCAACTGGCTGCGACTAGTTTTTTTATAAGTGCATGCATTTGGGTGAGTTATGACTTATGATCCGTATAGTTTGTAGAAGATGCAATTCGTTTTTCTTGTACTTAGGCTACTAAATGTGATGAATTAAAAGTAAAATTAATGCTATTAACTAATTATTAGCGGTTGAGTTGTGGATGTCCACAAATTGGCTTTTTAAATCAAGCTTACATATGATAGGAGAAACATCTAGGTCGCTTTTGATATGGGAATGTATGAAGCTTACTGCATTTATAAGGGGAAGAGGGTGATACTTATGTTTCTGTAGTTTGTGTTTTTATAAGTCTAATGCAATGATTGCTTGGTCTTTTCTTGATATACTTTGTTGTGTTAACGAGATTGAATCACCCACCATATGTGGTTGAGTCTGAGACTTTTCTTGATTCTAAAGTCTTATATATCGTAGTCAAGCACTGTATCTGATGTTGTGCTATCTTCATGTTTGAATAGATCCATGTGTTACTCAAAAAGAGTATCGACTTTTCTCATACGGAGAGAGCTCTAATTTTATGTGTCTGTTGTTGCATTTTACATTATTTGAGAACATTTTGGAATGGAGTTTAATTGAAATCTTATTCACATGAATTATATGAAAGCGTTTCTAAATATTTATCAACCTATAATTGACTTGATTTAACCATGATTTGATAGTCTAATGCACGTACACATGTCTGTTTTCTTGGTTATTTTAGAGTCAAGGCACATTCCTCATTTAATGAGACATTTGTTATCGTTCACAATACTGACAACAGAGATTAAAGCCCATTGGATCTATTCATATTGCCACTAGAAATAAAATAATTTGAAGGACTGTGTTTTACATCAAAAGAACGTGGCTTGTTGGTTTAGTGCTTGAACTTTTGACATACTTTGACTAAGAAAACAAATATTGAATCAACAAAGAAGCCACTGTTAAAATTAATACTTTCTCAGTTAAGAAAACTTGGTATGCGGTGTATGCTATCATAATGTACATATTTTACATTCTGTCCATGTATTAAATTGTACTTTTTGATGCAATGAAATACCTATTGCTGAGATGGCTGGTATTTATGAACTATGTGTCTGTTACTGTCATTTGCATGATTGGGTTGCCTGCAGATTTTTTTGTATATGTTTTCATATTTGGTGGGTTGCTTGTGTACTTTTGGCATATTTTCCATCCAATCTGCATTTTTGTTCTTGCTCCCAATTGTTCCACTGCTAGGATCTTGAGTTTGCAAATTTCTTTGAAAAGAACTGTTCCGTACTCTGGGCAAATCCAGTTTAGTGTATATTTTCTTCTTTTAATCTGCTACAAAGGTGAGGAGGTGGGAAATAAATATTGGAGATGTAACTTACTGTTATAGTAAATACAATGGGACTTTAGTCATGATTATACACCAACAAAAACAACCAAGCCTTATCCCATTAAGTGAGGTCGGCTACATGAATCAATTATGCCATAAGGTTCCATCCTATCCCATATGTCGATCCAACGCATTAATCTCTAGATTTTCCTTAATAGTTTCTCTTATAGTTTTTTTTAGGTCTTCCTTTGTATCTAGTGATCTGACTACCCTCCATCTTATCTACTCTCCTTTCCACAAAATCTACAGGTCTTCTCTCTACATATGCCCAAACCACTTAAGCCTAGTCTCCACCATCTTTTCTACTATGGATGCTACTCCAACTCTCTCTAATGTTGTCATTTCTAATTCTGTCCCATCTAGTCTCATCACACAACCAACGCATATCCTGTCTATGGTGTTAGTCATGATTACACTGTACTTTTTTGTGTATGGATATATATCAAATTATTTATTTAATAATAGTAGCATACCTTGTTTATATCATAAAAATTTCGAAAGTAACACTCCCCTAGAGTATCATGCAATATTAGGGCACTATGTTGTTTGACTTATGTAGCGGACTGCGGACCTTAGAATTAAAGGTTTTTTGTTGTTGTATTGTTGCATTCTCCAGAGTATTGTATATCAGAGGTCTAAAGTAAATATGATTAATTCATAAACTTTCTTGGGTAGCCCTTGGGTAGCCCCAAAACTTTGGAAGAAGTTTGGGGATTATAATATATTGGTAGGTTGGGGTTCTTGTTACTGTTGCAGGGATAATGTCTTGTAGTTTATATTATAACATTTTCTGGCCTTCTCTAGCTGGGGTTGGTTTTGGCAGGAGTCAAAAGTTCCCTGGACTCTTATTTATGGTTCTGAAGACCTTTGCTTATATAATATTTTTCTCTACATTTATTTTTTCCTTATATTGTTGTAGTTGATATAACAGTTTCATATCACATTTGCCTTCATGTATTGTTACCAGTTCTCTTTGTGCTTGTGTTGATGTATGATTGAAGTACTTTGTTGTCTTCTGTTAATTGTTCTGTGTGACAAGTTGATAAAATGACATATTTTGTGTATATGACTAACCTAAATCTTTGTTGAATCCTCATGATATGAATCAAAATGATTCCGATTACCTTCTTTTTTCACACATTACTGCTATTAGATTGAGCTAGATGTTATTCTTTGGACCAAAAGGGAATATAATAACAATGAATAGTTGAGTATACCATTTAAAATTGGTTAGATAGATCATACATGTAAACTATATCTTTAACTGTTTTTCTGGTGAAATCCTGTGCTTTTAGTCAAGTTTTAGCAATCTTCTGCCTGAACTCAATTGATTTCCTTGGTAATTCACACAGAATTTTTTTGTCTGCTGAACTTGTGCTTCAGTTGTCCTAATATTTGCTACATAGGCTTTTAGCAATTATATTCTTTGTAAGCTAAGTTGGAACTGATTTGTCTTTGTTAATAGTTCTGTTATGTTCATGTTTTTTATAGCTAGAGTATTTTTGCTTTTCTGTTTAATCATTCATTCACCATTTCTTTGAATATTGTTAGTTTGTGTACTGATACTTTTTCTTTCAACAGAGTGTTGCATATGATCGATCTAGCGCTCCCAAGGACTGTAGGATCTCCGGTTGGCTGCAGGGGAGCAATCCTAATTCTGTAATTGATACTGAGAAGATGTTTCTCCTGACAGAGTTTACATATGACCTTGAGAAGAGCAATGCTCAAACTTTCAACGTGTTGAATTCAGCAGGTTATGGTGTTATCGACACAATAAGGTTCGATTTTACGTCTAATCACGGAAGTCCCTCACACACCTGTATATATCGCTTGAGAGTTCACGGTTACGAATCTGACTCGGTTTCTGTGATGGCCATCGACTCATAA

Protein sequence

>MS.gene59775.t1

MSASTVSITAANPGTRRRPVISTDKKTASNLELLANDVAASPNTAGDGKNPSNTGNGRDLSHHSIRSDAVLSKDLAPATKRVAGGDSTRRVRKNGGKSEKQKWVTVARIFAKNFGLLVMVVGLVQLIRWFAVKSGEGVVVGGGFGGFSEYEDRITEMEGLLKKTAKMMQVQVDVVDKKIENEVGGLKKEMDAKIEQKGAFLENEIKKLVNKGDKLERYLDELKVGDLLTKEEFEKFVEGLKNVKGNGYEGGGLDEIREFARGVVEREIEKHAADGLGRVDYALANGGAWVVRHSEAYDVQRGNWFLLNARNGVHHNADKMLKPSFGEPGQCFPLKGSSGFVQIRLRAEIVPEAVTLEHVAKSVAYDRSSAPKDCRISGWLQGSNPNSVIDTEKMFLLTEFTYDLEKSNAQTFNVLNSAGYGVIDTIRFDFTSNHGSPSHTCIYRLRVHGYESDSVSVMAIDS